Query psy7348
Match_columns 229
No_of_seqs 114 out of 658
Neff 8.2
Searched_HMMs 46136
Date Sat Aug 17 00:26:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7348.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7348hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00700 JHBP Juvenile hormo 100.0 2E-58 4.3E-63 384.6 31.0 223 1-226 3-225 (225)
2 PF06585 JHBP: Haemolymph juve 100.0 6.6E-57 1.4E-61 380.2 25.4 224 1-224 25-248 (248)
3 smart00328 BPI1 BPI/LBP/CETP N 98.1 0.00066 1.4E-08 56.5 17.9 147 61-221 42-188 (225)
4 cd00025 BPI1 BPI/LBP/CETP N-te 97.8 0.0056 1.2E-07 50.9 18.0 162 44-221 28-190 (223)
5 PF01273 LBP_BPI_CETP: LBP / B 96.9 0.14 3.1E-06 39.9 20.0 109 44-168 19-128 (164)
6 PF07294 Fibroin_P25: Fibroin 96.2 0.024 5.1E-07 44.9 7.3 88 5-103 3-92 (198)
7 PF06585 JHBP: Haemolymph juve 95.2 0.68 1.5E-05 38.7 13.0 132 51-208 106-240 (248)
8 KOG4160|consensus 95.2 1.2 2.6E-05 41.5 15.5 166 42-221 54-220 (492)
9 smart00700 JHBP Juvenile hormo 84.0 22 0.00048 29.2 16.4 40 178-217 173-212 (225)
10 PF14356 DUF4403: Domain of un 72.6 47 0.001 30.3 10.4 74 129-204 309-383 (427)
11 PF05359 DUF748: Domain of Unk 71.6 39 0.00084 25.5 8.4 72 44-122 2-79 (151)
12 cd00264 BPI BPI/LBP/CETP domai 59.4 89 0.0019 24.9 14.7 45 119-168 95-139 (208)
13 PF11485 DUF3211: Protein of u 55.3 93 0.002 23.8 8.2 57 103-166 42-98 (136)
14 PRK11367 hypothetical protein; 52.1 2E+02 0.0044 26.8 13.1 42 178-219 297-347 (476)
15 COG1470 Predicted membrane pro 48.3 2.3E+02 0.0051 26.4 10.3 35 74-108 320-355 (513)
16 PF06744 DUF1215: Protein of u 47.9 78 0.0017 23.5 6.1 48 174-221 10-58 (125)
17 COG3056 Uncharacterized lipopr 44.8 1.2E+02 0.0025 24.7 6.7 45 141-194 148-192 (204)
18 PF06097 DUF945: Bacterial pro 43.9 2.5E+02 0.0053 25.4 11.8 89 43-133 130-234 (460)
19 PF14480 DNA_pol3_a_NI: DNA po 43.6 38 0.00082 22.6 3.5 27 73-99 21-47 (76)
20 PF08120 Toxin_32: Tamulustoxi 42.8 15 0.00033 20.3 1.1 16 6-21 9-25 (35)
21 TIGR03503 conserved hypothetic 38.1 2.7E+02 0.0057 25.2 8.7 15 83-97 237-251 (374)
22 PF05596 Taeniidae_ag: Taeniid 36.8 46 0.00099 22.0 2.9 45 166-212 19-63 (64)
23 PF06097 DUF945: Bacterial pro 33.8 3.6E+02 0.0077 24.3 15.0 56 114-169 230-291 (460)
24 PF14524 Wzt_C: Wzt C-terminal 33.0 47 0.001 24.4 2.9 24 87-111 83-107 (142)
25 TIGR03545 conserved hypothetic 32.0 4.6E+02 0.0099 25.0 12.6 56 150-207 486-545 (555)
26 KOG3446|consensus 30.9 48 0.001 23.3 2.3 31 5-37 20-50 (97)
27 PF08695 Coa1: Cytochrome oxid 29.4 2E+02 0.0043 20.8 5.7 47 108-165 66-113 (116)
28 PF03923 Lipoprotein_16: Uncha 26.4 1E+02 0.0022 23.9 3.8 20 173-192 130-149 (159)
29 PF14356 DUF4403: Domain of un 25.6 5.2E+02 0.011 23.5 14.0 48 175-222 138-187 (427)
30 PRK01905 DNA-binding protein F 25.5 87 0.0019 21.1 2.9 24 13-36 4-27 (77)
31 PF08989 DUF1896: Domain of un 24.7 52 0.0011 25.5 1.8 38 187-224 81-119 (144)
32 PF10988 DUF2807: Protein of u 24.7 3.3E+02 0.0071 20.9 15.2 64 67-130 69-143 (181)
33 PHA02600 FII major tail tube p 23.0 3.8E+02 0.0082 21.1 9.3 66 98-163 82-158 (169)
34 PF08564 CDC37_C: Cdc37 C term 22.3 54 0.0012 23.7 1.4 33 189-221 18-50 (99)
35 PF15167 DUF4581: Domain of un 22.0 40 0.00087 24.8 0.7 31 4-38 70-100 (128)
36 PF06501 Herpes_U55: Human her 21.3 5.9E+02 0.013 22.8 7.7 76 40-115 269-350 (432)
37 COG3427 Carbon monoxide dehydr 21.1 4E+02 0.0087 20.7 9.5 30 80-111 35-64 (146)
38 PF14005 YpjP: YpjP-like prote 20.8 3.2E+02 0.007 20.9 5.3 34 189-222 26-59 (136)
No 1
>smart00700 JHBP Juvenile hormone binding protein domains in insects. The juvenile hormone exerts pleiotropic functions during insect life cycles and its binding proteins regulate these functions.
Probab=100.00 E-value=2e-58 Score=384.55 Aligned_cols=223 Identities=27% Similarity=0.563 Sum_probs=218.0
Q ss_pred CCCCCcccCCCCCChhhHHHHHHHHHHHhhcCCCCCCCCCCCCceeeCeEEEeeCCCceEEEEEEEeeEEecccceEEEE
Q psy7348 1 MAEYIHPCTKASPKINDCIKQTFNHLRKYLIQGIDEIAVPSIEPLIIPAMKMENGHGAVRVRAIFSNLTIHGASNYTVLN 80 (229)
Q Consensus 1 ~p~~~~~C~~~dp~l~~Cl~~~~~~~~~~~~~Gip~lgip~ldPl~i~~~~i~~~~~~~~~~~~~~n~~v~Gls~~~i~~ 80 (229)
+|+++++|+++|| ++|+++++|+++|+|++|+|++|+||+||+.+++++++.+++.++++++|+|++++|+++++|++
T Consensus 3 ~p~~~~~C~~~dp--~~Ci~~~~~~~~~~~~~G~Pe~gip~ldPl~i~~~~i~~~~~~~~~~~~~~n~~i~Gl~~~~i~~ 80 (225)
T smart00700 3 GPAFLKPCKLGDP--SECLRDAIEALLPQLKNGIPEYGIPPLDPLEIDDLKISIGSGVIGLRLTFKNVKIYGLSNFEITK 80 (225)
T ss_pred CCCCCCcCCCCCh--hHHHHHHHHHHHHHHhcCCCccCCCCcCCEEeeeEEEecCCCceEEEEEEEEeEEEcCcceEEEE
Confidence 6999999999999 99999999999999999999999999999999999998887889999999999999999999999
Q ss_pred EEEcCCCcEEEEEEEecEEEEEEEEEEEEEEEEEEeeeeceeeEEeceeEEEEEEEEEEEeeCCeeEEEEEEeEEEEEec
Q psy7348 81 VKSDLNKYRIDLALHLPHIEVTGNYDVNGNVLLFPVRSRGDFWAAFGNVTGLAKLYATEQLRNETKFMKTERLGIQFKLS 160 (229)
Q Consensus 81 ~~~~~~~~~~~~~~~~P~l~~~g~Y~~~g~i~~~pi~g~G~~~~~~~~~~~~~~~~~~~~~~~g~~~l~i~~~~~~~~i~ 160 (229)
+++++.+.++.+++++|+++++|+|+++|+++.+||.|+|+++++++|+++.+++++..+. +|++|+++++++++++++
T Consensus 81 ~~~~~~~~~~~~~~~~p~l~~~g~Y~~~g~ll~lpi~g~G~~~~~l~n~~~~~~~~~~~~~-~g~~yl~i~~~~~~~~~~ 159 (225)
T smart00700 81 FKMDLKDKKIELKIEFPKLNVKGDYKLDGRLLGLPLNGKGDANFTLENVKIRGTLKLKLGP-DGKTYLKIKSLKVNFEVG 159 (225)
T ss_pred EEecCCCcEEEEEEECCcEEEEeeeEeeeEEEEEEecCCCcEEEEEEeeEEEEEEEEEEcc-CCeEEEEEEEEEEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999998877 899999999999999999
Q ss_pred eEEEEEcccCCCchHHHHHHHHHhhhcHHHHHHHhcHHHHHHHHHHHHHHHHHHhccCCccccccC
Q psy7348 161 KSNFKIKDFINRNNVIGEAMNIFLNQNAAEIIEEMKPAASAAIGKHFKSFLNAAFLQIPLKVWLRD 226 (229)
Q Consensus 161 ~~~~~l~nl~~g~~~l~~~~n~~iN~n~~~i~~~~~p~i~~~~~~~~~~~~N~i~~~~p~~~f~~d 226 (229)
+++++++|||+||++|++++|+|+|+||++++++++|.+.+++++++.+++|++|+++|+++|+++
T Consensus 160 ~~~~~~~NLfngn~~L~~~~n~~lNen~~~i~~e~~p~i~~~~~~~~~~~~n~~~~~vp~~~~f~~ 225 (225)
T smart00700 160 DVKSHLDNLFNGNKDLNDAINKFLNENWKALINELLPAIVEKLESIFLDLVNKVFAKVPIDEFFVD 225 (225)
T ss_pred eEEEEeeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHhhcC
Confidence 999999999999999999999999999999999999999999999999999999999999998864
No 2
>PF06585 JHBP: Haemolymph juvenile hormone binding protein (JHBP); InterPro: IPR010562 This family consists of several insect specific haemolymph juvenile hormone binding proteins (JHBP). Juvenile hormone (JH) has a profound effect on insects. It regulates embryogenesis, maintains the status quo of larva development and stimulates reproductive maturation in the adult forms. JH is transported from the sites of its synthesis to target tissues by a haemolymph carrier called juvenile hormone-binding protein (JHBP). JHBP protects the JH molecules from hydrolysis by non-specific esterases present in the insect haemolymph []. The crystal structure of the JHBP from Galleria mellonella (Wax moth) shows an unusual fold consisting of a long alpha-helix wrapped in a much curved antiparallel beta-sheet. The folding pattern for this structure closely resembles that found in some tandem-repeat mammalian lipid-binding and bactericidal permeability-increasing proteins, with a similar organisation of the major cavity and a disulphide bond linking the long helix and the beta-sheet. It would appear that JHBP forms two cavities, only one of which, the one near the N- and C-termini, binds the hormone; binding induces a conformational change, of unknown significance [, ].; PDB: 3A1Z_D 3AOS_B 3AOT_A 2RQF_A 2RCK_A 3E8W_A 3E8T_A.
Probab=100.00 E-value=6.6e-57 Score=380.20 Aligned_cols=224 Identities=28% Similarity=0.675 Sum_probs=206.7
Q ss_pred CCCCCcccCCCCCChhhHHHHHHHHHHHhhcCCCCCCCCCCCCceeeCeEEEeeCCCceEEEEEEEeeEEecccceEEEE
Q psy7348 1 MAEYIHPCTKASPKINDCIKQTFNHLRKYLIQGIDEIAVPSIEPLIIPAMKMENGHGAVRVRAIFSNLTIHGASNYTVLN 80 (229)
Q Consensus 1 ~p~~~~~C~~~dp~l~~Cl~~~~~~~~~~~~~Gip~lgip~ldPl~i~~~~i~~~~~~~~~~~~~~n~~v~Gls~~~i~~ 80 (229)
+|+++++|+|+||++++|+++++|+++|+|++|+|++|+|++||++++++++..+++.+++++.++|++++|+++++|++
T Consensus 25 ~p~~~~~C~~~~~~~~~cl~~~~~~~~~~l~~Gip~l~ip~ldPl~i~~~~~~~~~~~~~~~~~~~n~~i~Gls~~~v~~ 104 (248)
T PF06585_consen 25 LPSYIKPCKRSDPNLNECLRESIENFRPYLAKGIPELGIPPLDPLYIPEIDINFNSGPINLKANFKNVKIYGLSNFEVNK 104 (248)
T ss_dssp -S-S---BBTT----HHHHHHHHHHHHHHHTCEBGGGTBEETTTEEEEEEEEEE-TTCTTEEEEEEEEEEESGGG-EEEE
T ss_pred CCcccCcCCCCCccHHHHHHHHHHHHHHhhcCCCcccCCCCCCCEEecceEEEeecCCceEEEEEEeEEEeccCCcEEEE
Confidence 49999999999999999999999999999999999999999999999999999987888999999999999999999999
Q ss_pred EEEcCCCcEEEEEEEecEEEEEEEEEEEEEEEEEEeeeeceeeEEeceeEEEEEEEEEEEeeCCeeEEEEEEeEEEEEec
Q psy7348 81 VKSDLNKYRIDLALHLPHIEVTGNYDVNGNVLLFPVRSRGDFWAAFGNVTGLAKLYATEQLRNETKFMKTERLGIQFKLS 160 (229)
Q Consensus 81 ~~~~~~~~~~~~~~~~P~l~~~g~Y~~~g~i~~~pi~g~G~~~~~~~~~~~~~~~~~~~~~~~g~~~l~i~~~~~~~~i~ 160 (229)
+++|+.+.++.+++++|+++++|+|+++|+++.+|++|+|+++++++|+++++++++..+.++|++|++++++++++++|
T Consensus 105 ~~~d~~~~~~~~~~~~P~l~i~g~Y~~~g~i~~~pi~g~G~~~~~l~~~~~~~~~~~~~~~~~g~~~l~i~~~~~~~~~~ 184 (248)
T PF06585_consen 105 VSVDLKKLKLNFDLTFPKLSIKGKYEIDGKILLLPISGKGDFNITLENVRATGTIKGEVYKKNGKTYLRITNFKIDFDLG 184 (248)
T ss_dssp EEEETTTTEEEEEEEE-EEEEEEEEEEEEEECCECCCTEEEEEEEEEEEEEEEEEEEEEEEETS-EEEEEEEEEEEEEEC
T ss_pred EEEcCCCcEEEEEEEEEEEEEEEEEEEeeeeeeeEEeccceEEEEeeeEEEEEEEEEEEeecCCccEEEEEEEEEEEEec
Confidence 99999999999999999999999999999998999999999999999999999999999988999999999999999999
Q ss_pred eEEEEEcccCCCchHHHHHHHHHhhhcHHHHHHHhcHHHHHHHHHHHHHHHHHHhccCCccccc
Q psy7348 161 KSNFKIKDFINRNNVIGEAMNIFLNQNAAEIIEEMKPAASAAIGKHFKSFLNAAFLQIPLKVWL 224 (229)
Q Consensus 161 ~~~~~l~nl~~g~~~l~~~~n~~iN~n~~~i~~~~~p~i~~~~~~~~~~~~N~i~~~~p~~~f~ 224 (229)
+++++++|||+|++++++.+|+++|+||++++++++|.+++.+++++++++|++|+++|+++||
T Consensus 185 ~~~~~~~nl~~g~~~l~~~~n~~in~~~~~~~~~~~p~i~~~~~~~i~~~~N~~l~~~p~~~lf 248 (248)
T PF06585_consen 185 NVKFDLENLFNGNKELSDFINKFINENWPELLNEVKPDIEEILSKIITDIINKILSKVPYDELF 248 (248)
T ss_dssp EEEEEESHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CCHCB
T ss_pred eEEEEeeccCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999875
No 3
>smart00328 BPI1 BPI/LBP/CETP N-terminal domain. Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) N-terminal domain
Probab=98.08 E-value=0.00066 Score=56.49 Aligned_cols=147 Identities=12% Similarity=0.132 Sum_probs=91.7
Q ss_pred EEEEEEeeEEecccceEEEEEEEcCCCcEEEEEEEecEEEEEEEEEEEEEEEEEEeeeeceeeEEeceeEEEEEEEEEEE
Q psy7348 61 VRAIFSNLTIHGASNYTVLNVKSDLNKYRIDLALHLPHIEVTGNYDVNGNVLLFPVRSRGDFWAAFGNVTGLAKLYATEQ 140 (229)
Q Consensus 61 ~~~~~~n~~v~Gls~~~i~~~~~~~~~~~~~~~~~~P~l~~~g~Y~~~g~i~~~pi~g~G~~~~~~~~~~~~~~~~~~~~ 140 (229)
++..++|+++..++--. ..+++.+. .-+.+.+.=-.+.+.|+++..... +.-.|.+.+.+.++++.+.+....
T Consensus 42 v~~~~~~i~I~~~~~~~-s~~~~~p~-~Gi~l~is~~si~~~~~~~~~~~~----i~~~G~~~~~v~~~~i~~~l~l~~- 114 (225)
T smart00328 42 GHYSIYSLSISRLELPS-SQLRFQPS-KGLRLSISNLSLRVSGDLKGSLNF----IKLEGNFQLSVEGLSISADLRIES- 114 (225)
T ss_pred EEEEEEEEEEEeccCCC-CccccCCC-CceEEEEcCceEEEEEEEEEEEEE----EEeeeEEEEEEeeEEEEEEEEecc-
Confidence 66778888777665544 33333333 224443332245566665555433 677789999999988888887764
Q ss_pred eeCCeeEEEEEEeEEEEEeceEEEEEcccCCCchHHHHHHHHHhhhcHHHHHHHhcHHHHHHHHHHHHHHHHHHhccCCc
Q psy7348 141 LRNETKFMKTERLGIQFKLSKSNFKIKDFINRNNVIGEAMNIFLNQNAAEIIEEMKPAASAAIGKHFKSFLNAAFLQIPL 220 (229)
Q Consensus 141 ~~~g~~~l~i~~~~~~~~i~~~~~~l~nl~~g~~~l~~~~n~~iN~n~~~i~~~~~p~i~~~~~~~~~~~~N~i~~~~p~ 220 (229)
+.+|+ .++.-.+...+++++++++.+- ..+-..|.|-+.--..+-..++..|.+.+.+.+...+|..+..+|.
T Consensus 115 ~~~G~--p~v~~~~C~~~i~~v~l~~~G~-----~~swl~n~f~~~i~~~i~~~l~~~IC~~i~~~i~~~l~~~L~~lp~ 187 (225)
T smart00328 115 NPTGR--PTVTLSSCSSSIGDVRLHFSGS-----VLGWLINLFRKFIENTLRNVLEGQICPVIDSAVSNKMNDYLQTLPL 187 (225)
T ss_pred CCCCC--eeEEeCCcccCcceEEEEEECC-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCce
Confidence 35775 4555555567788999998742 1233334443433345555556666666666667788889998887
Q ss_pred c
Q psy7348 221 K 221 (229)
Q Consensus 221 ~ 221 (229)
.
T Consensus 188 ~ 188 (225)
T smart00328 188 S 188 (225)
T ss_pred e
Confidence 6
No 4
>cd00025 BPI1 BPI/LBP/CETP N-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) N-terminal domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria.; Apolar pockets on the concave surface bind a molecule of phosphatidylcholine, primarily by interacting with their acyl chains; this suggests that the pockets may also bind the acyl chains of lipopolysaccharide.
Probab=97.77 E-value=0.0056 Score=50.91 Aligned_cols=162 Identities=15% Similarity=0.095 Sum_probs=99.5
Q ss_pred ceeeCeEEEeeCC-CceEEEEEEEeeEEecccceEEEEEEEcCCCcEEEEEEEecEEEEEEEEEEEEEEEEEEeeeecee
Q psy7348 44 PLIIPAMKMENGH-GAVRVRAIFSNLTIHGASNYTVLNVKSDLNKYRIDLALHLPHIEVTGNYDVNGNVLLFPVRSRGDF 122 (229)
Q Consensus 44 Pl~i~~~~i~~~~-~~~~~~~~~~n~~v~Gls~~~i~~~~~~~~~~~~~~~~~~P~l~~~g~Y~~~g~i~~~pi~g~G~~ 122 (229)
++.+|+++-..+. ..-.++..++|+++.+++=-... +++-+ ..-+.+.+.-..+.++|+.+...+ ++.-.|.+
T Consensus 28 ~i~iPdi~~~~~~~~iG~v~~~~s~i~I~~~~lp~s~-l~~~~-~~gi~~~~s~~si~l~~~w~~~~~----~i~~~G~~ 101 (223)
T cd00025 28 KLQIPDILGAMKIKLLGKGRVGLSNKEIQELKLPSSS-IKLVE-VKGLDLSISNVSIGLSGVWKYNYR----FILDGGNV 101 (223)
T ss_pred cCCCCCccCccccccccEEEEEEEeEEEEEEecCCCc-eEEcC-CCceEEEEeCCeEEEEEEEEEeeE----EEEecEEE
Confidence 3444444444332 11247788888888776654322 33333 234444444345555555444443 35667899
Q ss_pred eEEeceeEEEEEEEEEEEeeCCeeEEEEEEeEEEEEeceEEEEEcccCCCchHHHHHHHHHhhhcHHHHHHHhcHHHHHH
Q psy7348 123 WAAFGNVTGLAKLYATEQLRNETKFMKTERLGIQFKLSKSNFKIKDFINRNNVIGEAMNIFLNQNAAEIIEEMKPAASAA 202 (229)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~g~~~l~i~~~~~~~~i~~~~~~l~nl~~g~~~l~~~~n~~iN~n~~~i~~~~~p~i~~~ 202 (229)
.+.+.++.+++.+..... ..|+ .++.--+...+++++++++.+ | ++-..+.|.+.--..+-..++..|...
T Consensus 102 ~l~v~gv~i~~~l~l~~d-~~G~--p~v~~~~C~~~v~~~~i~l~g---g---~~~l~~~f~~~i~~~l~~~l~~~iCp~ 172 (223)
T cd00025 102 ELSVEGMNIQADLRLGRD-PSGR--PKLSLSDCSSTVGSLRVHLGG---S---LGWLAKLFMNFIESLLKKVLKGQLCPV 172 (223)
T ss_pred EEEEeEEEEEEEEEEeeC-CCCC--eEEEeCCCCcccCcEEEEEeC---C---hHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999998888888653 2375 556666666889999999764 2 255556666655566666666666666
Q ss_pred HHHHHHHHHHHHhccCCcc
Q psy7348 203 IGKHFKSFLNAAFLQIPLK 221 (229)
Q Consensus 203 ~~~~~~~~~N~i~~~~p~~ 221 (229)
+...+...+|.++. +|-.
T Consensus 173 i~~~i~~~~~~~l~-lp~~ 190 (223)
T cd00025 173 IDASLVSMLESLLQ-LPKL 190 (223)
T ss_pred HHHHHHHhhhhhcC-CceE
Confidence 66666666777777 6654
No 5
>PF01273 LBP_BPI_CETP: LBP / BPI / CETP family, N-terminal domain; InterPro: IPR017942 This entry represents the N-terminal domain found in several lipid-binding serum glycoproteins. The N- and C-terminal domains share a similar two-layer alpha/beta structure, but they show little sequence identity. Proteins containing this N-terminal domain include: Bactericidal permeability-increasing protein (BPI) Lipopolysaccharide-binding protein (LBP) Cholesteryl ester transfer protein (CETP) Phospholipid transfer protein (PLTP) Palate, lung and nasal epithelium carcinoma-associated protein (PLUNC) Bactericidal permeability-increasing protein (BPI) is a potent antimicrobial protein of 456 residues that binds to and neutralises lipopolysaccharides from the outer membrane of Gram-negative bacteria []. BPI contains two domains that adopt the same structural fold, even though they have little sequence similarity []. Lipopolysaccharide-binding protein (LBP) is an endotoxin-binding protein that is closely related to, and functions in a co-ordinated manner with BPI to facilitate an integrated host response to invading Gram-negative bacteria []. Cholesteryl ester transfer protein (CETP) is a glycoprotein that facilitates the transfer of lipids (cholesteryl esters and triglycerides) between the different lipoproteins that transport them through plasma, including HDL, LDL, VLDL and chylomicrons. These lipoproteins shield the lipids from water by encapsulating them within a coating of polar lipids and proteins []. Phospholipid transfer protein (PLTP) exchanges phospholipids between lipoproteins and remodels high-density lipoproteins (HDLs) []. Palate, lung and nasal epithelium carcinoma-associated protein (PLUNC) is a potential host defensive protein that is secreted from the submucosal gland to the saliva and nasal lavage fluid. PLUNC appears to be a secreted product of neutrophil granules that participates in an aspect of the inflammatory response that contributes to host defence []. Short palate, lung and nasal epithelium clone 1 (SPLUNC1) may bind the lipopolysaccharide of Gram-negative nanobacteria, thereby playing an important role in the host defence of nasopharyngeal epithelium [].; GO: 0008289 lipid binding; PDB: 1EWF_A 1BP1_A 2OBD_A.
Probab=96.89 E-value=0.14 Score=39.94 Aligned_cols=109 Identities=10% Similarity=0.049 Sum_probs=60.5
Q ss_pred ceeeCeEEEeeCCC-ceEEEEEEEeeEEecccceEEEEEEEcCCCcEEEEEEEecEEEEEEEEEEEEEEEEEEeeeecee
Q psy7348 44 PLIIPAMKMENGHG-AVRVRAIFSNLTIHGASNYTVLNVKSDLNKYRIDLALHLPHIEVTGNYDVNGNVLLFPVRSRGDF 122 (229)
Q Consensus 44 Pl~i~~~~i~~~~~-~~~~~~~~~n~~v~Gls~~~i~~~~~~~~~~~~~~~~~~P~l~~~g~Y~~~g~i~~~pi~g~G~~ 122 (229)
.+.+|++.-..... .-.+...+.++++..++--. .++++-+...-....... .+.++|++.+.+.+.- +
T Consensus 19 ~~~ipdi~~~~~~~~~g~~~~~i~~i~I~~~~~~~-~~l~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~i~--~------ 88 (164)
T PF01273_consen 19 KIQIPDISGSFSSPFIGSVKYNISNIKISNFRLPQ-SSLELSPDGGIVLSIIPA-SASLSGNWPYKGGFIK--I------ 88 (164)
T ss_dssp C-----EEEEECETTTCCEEEEEEEEEEEEEEEEE-EEEEEETTTEEEEEEEEE-EEEEEEEEEEEECCEE--E------
T ss_pred cCCCCCcccccccccccceEEEEEeEEEEEeecCC-ccceECCCCceEEEEeee-EEEEEEEEecCCChhh--h------
Confidence 34566666555421 11467888888887666555 445555554433333333 5677777766653322 2
Q ss_pred eEEeceeEEEEEEEEEEEeeCCeeEEEEEEeEEEEEeceEEEEEcc
Q psy7348 123 WAAFGNVTGLAKLYATEQLRNETKFMKTERLGIQFKLSKSNFKIKD 168 (229)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~g~~~l~i~~~~~~~~i~~~~~~l~n 168 (229)
..++.+++.+.... +..|+..+.+ -+...+++++++.+.+
T Consensus 89 ---~~~v~i~~~i~l~~-~~~G~~~v~~--~~C~~~i~~v~i~~~g 128 (164)
T PF01273_consen 89 ---AVGVDISVTIRLER-DESGRPTVVV--GSCSSDIGSVDIKLHG 128 (164)
T ss_dssp ---EEEEEEEEEEEEEE-ECCTEEEEEE--EEEEEEEEEEEEEETT
T ss_pred ---eeeEEEEEEEEEEE-cCCCCeEEEE--CCCccCcceEEEEECC
Confidence 55566666666654 3347655544 4555778999999765
No 6
>PF07294 Fibroin_P25: Fibroin P25; InterPro: IPR009911 This family consists of several insect fibroin P25 proteins. Silk fibroin produced by the silkworm Bombyx mori consists of a heavy chain, a light chain, and a glycoprotein, P25. The heavy and light chains are linked by a disulphide bond, and P25 associates with disulphide-linked heavy and light chains by noncovalent interactions. P25 is plays an important role in maintaining integrity of the complex [].; GO: 0005198 structural molecule activity, 0005576 extracellular region
Probab=96.25 E-value=0.024 Score=44.89 Aligned_cols=88 Identities=19% Similarity=0.348 Sum_probs=69.6
Q ss_pred CcccCCCCCChhhHHHHHHHHHHHhhcCCCCC-CC-CCCCCceeeCeEEEeeCCCceEEEEEEEeeEEecccceEEEEEE
Q psy7348 5 IHPCTKASPKINDCIKQTFNHLRKYLIQGIDE-IA-VPSIEPLIIPAMKMENGHGAVRVRAIFSNLTIHGASNYTVLNVK 82 (229)
Q Consensus 5 ~~~C~~~dp~l~~Cl~~~~~~~~~~~~~Gip~-lg-ip~ldPl~i~~~~i~~~~~~~~~~~~~~n~~v~Gls~~~i~~~~ 82 (229)
..||+..| =+||++-+-+-- +=.|. .| || +|+.++...++.. ..+.+..-.|+.+.|...+.|..+-
T Consensus 3 vRPC~l~D---l~CI~dnlaaNS----~C~~~V~G~vP--s~y~i~~frfd~P--~fNaTyid~Nl~~rn~d~c~VsEFf 71 (198)
T PF07294_consen 3 VRPCPLFD---LKCIRDNLAANS----QCKPNVRGSVP--SPYTIPHFRFDTP--FFNATYIDYNLIIRNHDKCRVSEFF 71 (198)
T ss_pred cccccccc---HHHHHHHhhhhc----cCcCCCCCCCC--CccccccEEeecc--cccceeEeeeeEeccCCceEEEEEE
Confidence 46899999 899998754321 12222 22 44 7899999888763 3457888999999999999999999
Q ss_pred EcCCCcEEEEEEEecEEEEEE
Q psy7348 83 SDLNKYRIDLALHLPHIEVTG 103 (229)
Q Consensus 83 ~~~~~~~~~~~~~~P~l~~~g 103 (229)
++....+..+.+.+|.+++++
T Consensus 72 ~N~~t~k~VLs~Dcp~L~~eS 92 (198)
T PF07294_consen 72 FNMKTDKAVLSVDCPNLDFES 92 (198)
T ss_pred EecccceEEEEEecCcccCcC
Confidence 999999999999999998775
No 7
>PF06585 JHBP: Haemolymph juvenile hormone binding protein (JHBP); InterPro: IPR010562 This family consists of several insect specific haemolymph juvenile hormone binding proteins (JHBP). Juvenile hormone (JH) has a profound effect on insects. It regulates embryogenesis, maintains the status quo of larva development and stimulates reproductive maturation in the adult forms. JH is transported from the sites of its synthesis to target tissues by a haemolymph carrier called juvenile hormone-binding protein (JHBP). JHBP protects the JH molecules from hydrolysis by non-specific esterases present in the insect haemolymph []. The crystal structure of the JHBP from Galleria mellonella (Wax moth) shows an unusual fold consisting of a long alpha-helix wrapped in a much curved antiparallel beta-sheet. The folding pattern for this structure closely resembles that found in some tandem-repeat mammalian lipid-binding and bactericidal permeability-increasing proteins, with a similar organisation of the major cavity and a disulphide bond linking the long helix and the beta-sheet. It would appear that JHBP forms two cavities, only one of which, the one near the N- and C-termini, binds the hormone; binding induces a conformational change, of unknown significance [, ].; PDB: 3A1Z_D 3AOS_B 3AOT_A 2RQF_A 2RCK_A 3E8W_A 3E8T_A.
Probab=95.24 E-value=0.68 Score=38.68 Aligned_cols=132 Identities=19% Similarity=0.235 Sum_probs=59.8
Q ss_pred EEeeCCCceEEEEEEEeeEEecccceEEEEEE-EcCCCcEEEEEEEecEEEEEEEEEEEEEEEEEEeeeeceeeEEecee
Q psy7348 51 KMENGHGAVRVRAIFSNLTIHGASNYTVLNVK-SDLNKYRIDLALHLPHIEVTGNYDVNGNVLLFPVRSRGDFWAAFGNV 129 (229)
Q Consensus 51 ~i~~~~~~~~~~~~~~n~~v~Gls~~~i~~~~-~~~~~~~~~~~~~~P~l~~~g~Y~~~g~i~~~pi~g~G~~~~~~~~~ 129 (229)
+++.....+.+++++.++.+.| +++++--- .-+..-+-.+.+.+-.+++++....+ ....+|.-.+.++++
T Consensus 106 ~~d~~~~~~~~~~~~P~l~i~g--~Y~~~g~i~~~pi~g~G~~~~~l~~~~~~~~~~~~------~~~~~g~~~l~i~~~ 177 (248)
T PF06585_consen 106 SVDLKKLKLNFDLTFPKLSIKG--KYEIDGKILLLPISGKGDFNITLENVRATGTIKGE------VYKKNGKTYLRITNF 177 (248)
T ss_dssp EEETTTTEEEEEEEE-EEEEEE--EEEEEEEECCECCCTEEEEEEEEEEEEEEEEEEEE------EEEETS-EEEEEEEE
T ss_pred EEcCCCcEEEEEEEEEEEEEEE--EEEEeeeeeeeEEeccceEEEEeeeEEEEEEEEEE------EeecCCccEEEEEEE
Confidence 3333344555666666666666 44444331 12233444444444333333322222 122455666666655
Q ss_pred EEEEEEEEEEEeeCCeeEEEEEEeEEEEE-e-ceEEEEEcccCCCchHHHHHHHHHhhhcHHHHHHHhcHHHHHHHHHHH
Q psy7348 130 TGLAKLYATEQLRNETKFMKTERLGIQFK-L-SKSNFKIKDFINRNNVIGEAMNIFLNQNAAEIIEEMKPAASAAIGKHF 207 (229)
Q Consensus 130 ~~~~~~~~~~~~~~g~~~l~i~~~~~~~~-i-~~~~~~l~nl~~g~~~l~~~~n~~iN~n~~~i~~~~~p~i~~~~~~~~ 207 (229)
++..+ +.+++++++ + ++ .-.++... ++.+++.+..++++.++++.+.+...+...+.+++
T Consensus 178 ~~~~~---------------~~~~~~~~~nl~~g-~~~l~~~~--n~~in~~~~~~~~~~~p~i~~~~~~~i~~~~N~~l 239 (248)
T PF06585_consen 178 KIDFD---------------LGNVKFDLENLFNG-NKELSDFI--NKFINENWPELLNEVKPDIEEILSKIITDIINKIL 239 (248)
T ss_dssp EEEEE---------------ECEEEEEESHHHHH-HHHHHHHH--HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEE---------------eceEEEEeeccCCC-CHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54443 223333332 1 10 11222222 34555555666666666666666666655555544
Q ss_pred H
Q psy7348 208 K 208 (229)
Q Consensus 208 ~ 208 (229)
.
T Consensus 240 ~ 240 (248)
T PF06585_consen 240 S 240 (248)
T ss_dssp H
T ss_pred H
Confidence 3
No 8
>KOG4160|consensus
Probab=95.20 E-value=1.2 Score=41.48 Aligned_cols=166 Identities=13% Similarity=0.142 Sum_probs=108.9
Q ss_pred CCceeeCeEEEeeCCC-ceEEEEEEEeeEEecccceEEEEEEEcCCCcEEEEEEEecEEEEEEEEEEEEEEEEEEeeeec
Q psy7348 42 IEPLIIPAMKMENGHG-AVRVRAIFSNLTIHGASNYTVLNVKSDLNKYRIDLALHLPHIEVTGNYDVNGNVLLFPVRSRG 120 (229)
Q Consensus 42 ldPl~i~~~~i~~~~~-~~~~~~~~~n~~v~Gls~~~i~~~~~~~~~~~~~~~~~~P~l~~~g~Y~~~g~i~~~pi~g~G 120 (229)
+.|+.+|++....... .-+++.++.++.+.-.+-.. ..++.-+ +..+.+...-=.+.+.|+|...++.+.+. |
T Consensus 54 ~~~~~~p~~~~~~~~~~~g~~~~~~~~i~i~~~~~~s-~~~~~~~-~~~~~~~~~n~~~~~~~~~~~~~~~~~~~----g 127 (492)
T KOG4160|consen 54 LLRLTIPDIEGSMKSSHIGGGRYTLSSIKILRFSVPS-SQLSLVP-QAGLSWSITNANISLSGRWKARTRFLALG----G 127 (492)
T ss_pred hccCCchhhhcccccceecceEEEecceeEEeccccc-cceeecC-CceEEEEEeeEEEEEeeeeEeEEEEEecC----C
Confidence 4566666655544321 12366777777766554443 2333444 56666666665788889988865555333 7
Q ss_pred eeeEEeceeEEEEEEEEEEEeeCCeeEEEEEEeEEEEEeceEEEEEcccCCCchHHHHHHHHHhhhcHHHHHHHhcHHHH
Q psy7348 121 DFWAAFGNVTGLAKLYATEQLRNETKFMKTERLGIQFKLSKSNFKIKDFINRNNVIGEAMNIFLNQNAAEIIEEMKPAAS 200 (229)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~g~~~l~i~~~~~~~~i~~~~~~l~nl~~g~~~l~~~~n~~iN~n~~~i~~~~~p~i~ 200 (229)
.+...+++......+.......+|+ ..++.........+++..++ ...+...+.+.|...+.+-..++-.+.
T Consensus 128 ~~~~~~~g~~~~~~~~~~~~~~~~~--~~v~~~~C~~~~~~l~~~~~------~~~~~l~~~~~~~~~~~i~~~~~~~~c 199 (492)
T KOG4160|consen 128 QVDASVKGMDIQINLSLGSDIGDGK--PAVSDSSCSAAISDLHVQMG------SLASWLIQLFLNAISDNIRSVLESQIC 199 (492)
T ss_pred eeEEEeecceEEEeeeeeccCCCCc--ceeeeecceeEeeeeEeecC------CCcHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 8888888755555554443223555 56666666666777777755 345677888888888888888888888
Q ss_pred HHHHHHHHHHHHHHhccCCcc
Q psy7348 201 AAIGKHFKSFLNAAFLQIPLK 221 (229)
Q Consensus 201 ~~~~~~~~~~~N~i~~~~p~~ 221 (229)
+.+...+...+|..+...|..
T Consensus 200 ~~~~~~~~~~~~~~l~~~~~~ 220 (492)
T KOG4160|consen 200 KKIRASVNGDLNSFLQTLPVS 220 (492)
T ss_pred HHHHhhhchhhhhhhccCCcc
Confidence 888888888888888888766
No 9
>smart00700 JHBP Juvenile hormone binding protein domains in insects. The juvenile hormone exerts pleiotropic functions during insect life cycles and its binding proteins regulate these functions.
Probab=83.96 E-value=22 Score=29.15 Aligned_cols=40 Identities=15% Similarity=0.080 Sum_probs=27.2
Q ss_pred HHHHHHhhhcHHHHHHHhcHHHHHHHHHHHHHHHHHHhcc
Q psy7348 178 EAMNIFLNQNAAEIIEEMKPAASAAIGKHFKSFLNAAFLQ 217 (229)
Q Consensus 178 ~~~n~~iN~n~~~i~~~~~p~i~~~~~~~~~~~~N~i~~~ 217 (229)
..+++.+|+-..+-|+++...+...+.+.+..++-.++.+
T Consensus 173 ~~L~~~~n~~lNen~~~i~~e~~p~i~~~~~~~~~~~~n~ 212 (225)
T smart00700 173 KDLNDAINKFLNENWKALINELLPAIVEKLESIFLDLVNK 212 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777777777777776666655543
No 10
>PF14356 DUF4403: Domain of unknown function (DUF4403)
Probab=72.56 E-value=47 Score=30.35 Aligned_cols=74 Identities=19% Similarity=0.186 Sum_probs=37.9
Q ss_pred eEEEEEEEEEEEeeCCeeEEEEEEeEEEEEeceEEEEEc-ccCCCchHHHHHHHHHhhhcHHHHHHHhcHHHHHHHH
Q psy7348 129 VTGLAKLYATEQLRNETKFMKTERLGIQFKLSKSNFKIK-DFINRNNVIGEAMNIFLNQNAAEIIEEMKPAASAAIG 204 (229)
Q Consensus 129 ~~~~~~~~~~~~~~~g~~~l~i~~~~~~~~i~~~~~~l~-nl~~g~~~l~~~~n~~iN~n~~~i~~~~~p~i~~~~~ 204 (229)
+..++.+.+.+...-..+-+++++++++++=+++-.... .|+ .+.+.+.+.+-++-.-.+.+++++..|+++++
T Consensus 309 ~~G~i~l~G~P~yD~~~~~l~l~dld~~~~t~~~l~~~a~wl~--~~~i~~~i~~~~~~~l~~~l~~~~~~i~~~l~ 383 (427)
T PF14356_consen 309 LNGTIYLSGRPVYDPATQTLRLEDLDFDLDTKNFLLKTAAWLL--HGRIRKAIEEKLVFDLGPQLEEAKKKINAALA 383 (427)
T ss_pred EEEEEEEEEEEEECCCCCEEEEEeeEEEecccchHHHHHHHHH--HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHh
Confidence 455666677766322333478888887766555322221 133 23444444444444444455555555544444
No 11
>PF05359 DUF748: Domain of Unknown Function (DUF748); InterPro: IPR008023 This is a family of proteins of unknown function.
Probab=71.56 E-value=39 Score=25.55 Aligned_cols=72 Identities=17% Similarity=0.319 Sum_probs=38.5
Q ss_pred ceeeCeEEEeeCCCceEEEEEEEeeEEecccceEEEEEEEcC------CCcEEEEEEEecEEEEEEEEEEEEEEEEEEee
Q psy7348 44 PLIIPAMKMENGHGAVRVRAIFSNLTIHGASNYTVLNVKSDL------NKYRIDLALHLPHIEVTGNYDVNGNVLLFPVR 117 (229)
Q Consensus 44 Pl~i~~~~i~~~~~~~~~~~~~~n~~v~Gls~~~i~~~~~~~------~~~~~~~~~~~P~l~~~g~Y~~~g~i~~~pi~ 117 (229)
|+.++++.+.. .++.|.|..+.+--..++.++++.. .+....+.+.. .+.-.|.-+++|++-..|..
T Consensus 2 ~~~i~~l~l~~------g~i~f~D~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~l~~-~~~~~g~l~~~G~~~~~~~~ 74 (151)
T PF05359_consen 2 RIRIDHLSLKN------GRINFTDQSVPPPFKLELSDINLTLDNLSTDSNEPAPVSLSA-SLNGGGTLSASGKLSPFPLD 74 (151)
T ss_pred eEEEeEEEEEC------CEEEEEeCCCCCCceEEEEEEEEEEEeccCCCCCcEEEEEEE-EeCCCCEEEEEEEEEeCCcC
Confidence 45666666664 3566666655554445555554321 12334444433 23333677777777666666
Q ss_pred eecee
Q psy7348 118 SRGDF 122 (229)
Q Consensus 118 g~G~~ 122 (229)
.+|.+
T Consensus 75 ~~~~~ 79 (151)
T PF05359_consen 75 SDGTL 79 (151)
T ss_pred eeEEE
Confidence 65444
No 12
>cd00264 BPI BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria.; Apolar pockets on the concave surface bind a molecule of phosphatidylcholine, primarily by interacting with their acyl chains; this suggests that the pockets may also bind the acyl chains of lipopolysaccharide.
Probab=59.39 E-value=89 Score=24.87 Aligned_cols=45 Identities=11% Similarity=-0.045 Sum_probs=27.8
Q ss_pred eceeeEEeceeEEEEEEEEEEEeeCCeeEEEEEEeEEEEEeceEEEEEcc
Q psy7348 119 RGDFWAAFGNVTGLAKLYATEQLRNETKFMKTERLGIQFKLSKSNFKIKD 168 (229)
Q Consensus 119 ~G~~~~~~~~~~~~~~~~~~~~~~~g~~~l~i~~~~~~~~i~~~~~~l~n 168 (229)
.|.+.+.+. +.+++++..... +|+-.+.+.. .+.+++.+++++.+
T Consensus 95 ~~~~~~~l~-v~~~~~~~l~~~--~g~l~~~l~~--c~~~~~~~~~~~~g 139 (208)
T cd00264 95 GGNPLFSLE-VEISASLQLSVD--PGRLTLSLSL--CSSTVELLSSNIGG 139 (208)
T ss_pred CCCEEEEEE-EEEEEEEEEEee--CCEEEEEEec--CcceeeEEEEEEec
Confidence 466666666 666666666542 3664444444 45678888888866
No 13
>PF11485 DUF3211: Protein of unknown function (DUF3211); InterPro: IPR021578 This archaeal family of proteins has no known function. ; PDB: 2EJX_A.
Probab=55.29 E-value=93 Score=23.84 Aligned_cols=57 Identities=19% Similarity=0.306 Sum_probs=35.3
Q ss_pred EEEEEEEEEEEEEeeeeceeeEEeceeEEEEEEEEEEEeeCCeeEEEEEEeEEEEEeceEEEEE
Q psy7348 103 GNYDVNGNVLLFPVRSRGDFWAAFGNVTGLAKLYATEQLRNETKFMKTERLGIQFKLSKSNFKI 166 (229)
Q Consensus 103 g~Y~~~g~i~~~pi~g~G~~~~~~~~~~~~~~~~~~~~~~~g~~~l~i~~~~~~~~i~~~~~~l 166 (229)
+.|++.|+++.+|+.-.|+..+..++++....+.......+| ++.++.+-+.+++.+
T Consensus 42 ~sF~~~g~~~~~~~~~~G~vy~s~~~ItYvf~~~~g~~~g~G-------kL~i~~~~~~i~l~~ 98 (136)
T PF11485_consen 42 NSFRAEGKFGGFPFEMKGNVYVSSNEITYVFNLAGGGPNGNG-------KLTIQLENGKIKLIF 98 (136)
T ss_dssp TEEEEEEEETTEEEEEEEEEEEETTEEEEEEE----ETTEEE-------EEEEEEETTEEEEEE
T ss_pred CEEEEEEEEeeEEEEEEEEEEEccceEEEEEEeeccCCCCcE-------EEEEEecCCEEEEEE
Confidence 478999998888888888888877766665555443212233 355555556666666
No 14
>PRK11367 hypothetical protein; Provisional
Probab=52.09 E-value=2e+02 Score=26.80 Aligned_cols=42 Identities=21% Similarity=0.294 Sum_probs=20.1
Q ss_pred HHHHHHhhhcHHHHHHHh-c-H-------HHHHHHHHHHHHHHHHHhccCC
Q psy7348 178 EAMNIFLNQNAAEIIEEM-K-P-------AASAAIGKHFKSFLNAAFLQIP 219 (229)
Q Consensus 178 ~~~n~~iN~n~~~i~~~~-~-p-------~i~~~~~~~~~~~~N~i~~~~p 219 (229)
+++++|+...-..+...+ + | ...+....++...+..+++.=|
T Consensus 297 ~a~~~f~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LLk~~P 347 (476)
T PRK11367 297 SAVRQFIIQYNIAMQKQLAAHPELANDEVALQEVNAALFKEYLPLLQKSEP 347 (476)
T ss_pred HHHHHHHHHHHHHHHHHHhhCccccCChhhhhHHHHHHHHHHHHHHHhCCC
Confidence 555666655444333222 1 2 2344555555556655555443
No 15
>COG1470 Predicted membrane protein [Function unknown]
Probab=48.34 E-value=2.3e+02 Score=26.41 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=26.9
Q ss_pred cceEEEEEEEcCC-CcEEEEEEEecEEEEEEEEEEE
Q psy7348 74 SNYTVLNVKSDLN-KYRIDLALHLPHIEVTGNYDVN 108 (229)
Q Consensus 74 s~~~i~~~~~~~~-~~~~~~~~~~P~l~~~g~Y~~~ 108 (229)
.+.+|+++++++. .+.+.++++-|.=-.-|+|.+.
T Consensus 320 g~~~vt~vkL~~gE~kdvtleV~ps~na~pG~Ynv~ 355 (513)
T COG1470 320 GELRVTSVKLKPGEEKDVTLEVYPSLNATPGTYNVT 355 (513)
T ss_pred CceEEEEEEecCCCceEEEEEEecCCCCCCCceeEE
Confidence 4678999999986 5778888887654455899877
No 16
>PF06744 DUF1215: Protein of unknown function (DUF1215); InterPro: IPR010623 This domain represents a conserved region situated towards the C-terminal end of several hypothetical bacterial proteins of unknown function. A few members resemble the ImcF protein, which has been proposed [] to be involved in Vibrio cholerae cell surface reorganisation that results in increased adherence to epithelial cells line and increased conjugation frequency.
Probab=47.90 E-value=78 Score=23.46 Aligned_cols=48 Identities=8% Similarity=0.009 Sum_probs=40.3
Q ss_pred hHHHHHHHHHhhhcHHHHHHHhcHHHHHHHHHHHHHHHHH-HhccCCcc
Q psy7348 174 NVIGEAMNIFLNQNAAEIIEEMKPAASAAIGKHFKSFLNA-AFLQIPLK 221 (229)
Q Consensus 174 ~~l~~~~n~~iN~n~~~i~~~~~p~i~~~~~~~~~~~~N~-i~~~~p~~ 221 (229)
+.+...+...+.+.|..+....+..|+..+..-+....++ +-.++|++
T Consensus 10 ~pl~~~l~~~~~~~~~~~~~~a~~~ln~~w~~~V~~~~~~~i~gRYPF~ 58 (125)
T PF06744_consen 10 EPLRPWLLSPADQAWKLVLQGARSYLNKAWQAEVYPFCRQAIAGRYPFD 58 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 5677888899999999999999999999997666666655 66699987
No 17
>COG3056 Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=44.78 E-value=1.2e+02 Score=24.65 Aligned_cols=45 Identities=18% Similarity=0.267 Sum_probs=29.9
Q ss_pred eeCCeeEEEEEEeEEEEEeceEEEEEcccCCCchHHHHHHHHHhhhcHHHHHHH
Q psy7348 141 LRNETKFMKTERLGIQFKLSKSNFKIKDFINRNNVIGEAMNIFLNQNAAEIIEE 194 (229)
Q Consensus 141 ~~~g~~~l~i~~~~~~~~i~~~~~~l~nl~~g~~~l~~~~n~~iN~n~~~i~~~ 194 (229)
..+|+ ..+++....+.+++-. -+|+++.+++|..||+-..++..+
T Consensus 148 ~~~Gk---~~Kny~at~~~~Gafs------AsN~eI~~vln~v~ndvi~~i~qD 192 (204)
T COG3056 148 AANGK---MVKNYRATYNVEGAFS------ASNDEIADVLNSVLNDVIADIAQD 192 (204)
T ss_pred cCCCc---eeeeeeeeeeeeeeee------cCChHHHHHHHHHHHHHHHHHhcc
Confidence 34673 3466666655544321 258999999999999877777654
No 18
>PF06097 DUF945: Bacterial protein of unknown function (DUF945); InterPro: IPR010352 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=43.90 E-value=2.5e+02 Score=25.39 Aligned_cols=89 Identities=16% Similarity=0.197 Sum_probs=49.4
Q ss_pred CceeeCeEEEeeCCCceEEEEEEEeeEEe--cccceEEEEEE----EcCCCcEEEEEEEecEEEEEE----EEEEEEEEE
Q psy7348 43 EPLIIPAMKMENGHGAVRVRAIFSNLTIH--GASNYTVLNVK----SDLNKYRIDLALHLPHIEVTG----NYDVNGNVL 112 (229)
Q Consensus 43 dPl~i~~~~i~~~~~~~~~~~~~~n~~v~--Gls~~~i~~~~----~~~~~~~~~~~~~~P~l~~~g----~Y~~~g~i~ 112 (229)
.|+.+.. .+... |....++.+.-+... +-..+.+..+. ++.....+.+.+.+|.+.+++ ..+++|--+
T Consensus 130 ~pl~~~t-~~~~~-g~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 207 (460)
T PF06097_consen 130 SPLTITT-VVGFD-GSVSGELNLPPFNYTEEDGGKLNWSGLQGKFSFDSDGKQLSLELNWPGLTLTDPPGGQLELKGLKL 207 (460)
T ss_pred CceEEEE-EEEeC-CceEEEEEEcCeeeecCCCcEEEEeCcEEEEEEecCCCeEEEEEEeccEEEecCCCcEEEEeceEE
Confidence 4555554 33332 555566666666552 22233333332 334567888999999999988 555554432
Q ss_pred EEEee------eeceeeEEeceeEEEE
Q psy7348 113 LFPVR------SRGDFWAAFGNVTGLA 133 (229)
Q Consensus 113 ~~pi~------g~G~~~~~~~~~~~~~ 133 (229)
-.... ..|+..+++.++++..
T Consensus 208 ~~~~~~~~~~l~~G~~~~~l~~i~~~~ 234 (460)
T PF06097_consen 208 SGDLKRSSEDLWLGDSSLKLDSISFSD 234 (460)
T ss_pred EeeeccccCCccccceEEEeeeEEEEc
Confidence 21111 2366667777666544
No 19
>PF14480 DNA_pol3_a_NI: DNA polymerase III polC-type N-terminus I
Probab=43.60 E-value=38 Score=22.57 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=23.6
Q ss_pred ccceEEEEEEEcCCCcEEEEEEEecEE
Q psy7348 73 ASNYTVLNVKSDLNKYRIDLALHLPHI 99 (229)
Q Consensus 73 ls~~~i~~~~~~~~~~~~~~~~~~P~l 99 (229)
+.+..|.++.++-.+.++.+.+.+|.+
T Consensus 21 f~~~~I~kv~v~k~~~~w~f~l~~~~~ 47 (76)
T PF14480_consen 21 FEDAEIEKVTVHKKSRKWRFHLSSPHI 47 (76)
T ss_pred hcccEEEEEEEEccCCEEEEEEEeCCc
Confidence 577889999999889999999999875
No 20
>PF08120 Toxin_32: Tamulustoxin family; InterPro: IPR012636 This family consists of the tamulustoxins, which are found in the venom of Mesobuthus tamulus (Eastern Indian scorpion) (Buthus tamulus). Tamulustoxin shares no similarity with other scorpion venom toxins, although the positions of its six cysteine residues suggest that it shares the same structural scaffold. Tamulustoxin acts as a potassium channel blocker [].; GO: 0019870 potassium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region
Probab=42.76 E-value=15 Score=20.29 Aligned_cols=16 Identities=31% Similarity=0.897 Sum_probs=13.2
Q ss_pred cccCCCCCC-hhhHHHH
Q psy7348 6 HPCTKASPK-INDCIKQ 21 (229)
Q Consensus 6 ~~C~~~dp~-l~~Cl~~ 21 (229)
.-|.|++|. +.+|+++
T Consensus 9 tdcrrnspgtygecvkk 25 (35)
T PF08120_consen 9 TDCRRNSPGTYGECVKK 25 (35)
T ss_pred cccccCCCCchhhhhhh
Confidence 459999997 8999875
No 21
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=38.14 E-value=2.7e+02 Score=25.20 Aligned_cols=15 Identities=27% Similarity=0.239 Sum_probs=7.0
Q ss_pred EcCCCcEEEEEEEec
Q psy7348 83 SDLNKYRIDLALHLP 97 (229)
Q Consensus 83 ~~~~~~~~~~~~~~P 97 (229)
+++....+...+..|
T Consensus 237 i~~~s~~~~~~~~~P 251 (374)
T TIGR03503 237 IDPGSLVIHGELVFP 251 (374)
T ss_pred eccccEEEEEEEECC
Confidence 344444444444444
No 22
>PF05596 Taeniidae_ag: Taeniidae antigen; InterPro: IPR008860 This family consists of several antigen proteins from Taenia and Echinococcus (tapeworm) species.
Probab=36.77 E-value=46 Score=22.03 Aligned_cols=45 Identities=20% Similarity=0.401 Sum_probs=34.4
Q ss_pred EcccCCCchHHHHHHHHHhhhcHHHHHHHhcHHHHHHHHHHHHHHHH
Q psy7348 166 IKDFINRNNVIGEAMNIFLNQNAAEIIEEMKPAASAAIGKHFKSFLN 212 (229)
Q Consensus 166 l~nl~~g~~~l~~~~n~~iN~n~~~i~~~~~p~i~~~~~~~~~~~~N 212 (229)
+.++|..| -|++-+.++.+ .|.++..+++--|...+++.+....|
T Consensus 19 v~~FF~~D-PlGqkIa~l~k-dw~~~~~~~r~KiR~~L~ey~k~L~~ 63 (64)
T PF05596_consen 19 VRNFFYED-PLGQKIAQLAK-DWNEICQEVRKKIRAALAEYCKGLKN 63 (64)
T ss_pred HHHHhccC-chHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34667654 46676766665 69999999999999999998887765
No 23
>PF06097 DUF945: Bacterial protein of unknown function (DUF945); InterPro: IPR010352 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=33.81 E-value=3.6e+02 Score=24.33 Aligned_cols=56 Identities=5% Similarity=0.031 Sum_probs=28.8
Q ss_pred EEeeee-ceeeEEeceeEEEEEEEEEE--EeeCCeeEEEEEEeEEEE-EeceEE--EEEccc
Q psy7348 114 FPVRSR-GDFWAAFGNVTGLAKLYATE--QLRNETKFMKTERLGIQF-KLSKSN--FKIKDF 169 (229)
Q Consensus 114 ~pi~g~-G~~~~~~~~~~~~~~~~~~~--~~~~g~~~l~i~~~~~~~-~i~~~~--~~l~nl 169 (229)
+.+.+. +.-.+.+.++++........ ..-+...-+++.++.+.= ++++.+ +.+.||
T Consensus 230 i~~~~~~~~~~~~l~~l~~~~~s~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~l~~~l~~l 291 (460)
T PF06097_consen 230 ISFSDGDKGQPFELKGLSVDSDSDISDDGDTLDSTVTYSIDSLSVNGQNLGDLKLDLSLNNL 291 (460)
T ss_pred EEEEccCCCceEEEeccEEeeecccccccceecceeeeeeceEEECCeecccEEEEEEcccC
Confidence 455555 67777888888755554432 111332234555555433 355444 444555
No 24
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=32.98 E-value=47 Score=24.37 Aligned_cols=24 Identities=13% Similarity=0.421 Sum_probs=14.6
Q ss_pred CcEEEEEEEecEEEEE-EEEEEEEEE
Q psy7348 87 KYRIDLALHLPHIEVT-GNYDVNGNV 111 (229)
Q Consensus 87 ~~~~~~~~~~P~l~~~-g~Y~~~g~i 111 (229)
..+..+.+.+|.. +. |+|.++-.+
T Consensus 83 ~g~~~~~~~i~~~-L~~G~Y~i~v~l 107 (142)
T PF14524_consen 83 GGTYEVTFTIPKP-LNPGEYSISVGL 107 (142)
T ss_dssp T-EEEEEEEEE---B-SEEEEEEEEE
T ss_pred CCEEEEEEEEcCc-cCCCeEEEEEEE
Confidence 5566777777777 55 899888554
No 25
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=32.04 E-value=4.6e+02 Score=25.04 Aligned_cols=56 Identities=11% Similarity=0.273 Sum_probs=37.7
Q ss_pred EEEeEEEEEec----eEEEEEcccCCCchHHHHHHHHHhhhcHHHHHHHhcHHHHHHHHHHH
Q psy7348 150 TERLGIQFKLS----KSNFKIKDFINRNNVIGEAMNIFLNQNAAEIIEEMKPAASAAIGKHF 207 (229)
Q Consensus 150 i~~~~~~~~i~----~~~~~l~nl~~g~~~l~~~~n~~iN~n~~~i~~~~~p~i~~~~~~~~ 207 (229)
|..++++..++ ++.+.++-=. |+.|++.+.+.++.-......+++..+++.+++-.
T Consensus 486 i~~~~v~~~~~G~~~~p~l~i~SdL--d~ql~~a~~~~~~~~~~~~~~~l~~~l~e~i~e~~ 545 (555)
T TIGR03545 486 IDVLTVDADIKGILEDPNLKINSNL--DKLLAKAFKKEIAAQIEKAKAKLKAKLNEKLSEQL 545 (555)
T ss_pred CCeeEEEEeeccccCCCceeeecCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556665543 3555554322 57788888888888888888888877777766543
No 26
>KOG3446|consensus
Probab=30.86 E-value=48 Score=23.30 Aligned_cols=31 Identities=16% Similarity=0.353 Sum_probs=27.2
Q ss_pred CcccCCCCCChhhHHHHHHHHHHHhhcCCCCCC
Q psy7348 5 IHPCTKASPKINDCIKQTFNHLRKYLIQGIDEI 37 (229)
Q Consensus 5 ~~~C~~~dp~l~~Cl~~~~~~~~~~~~~Gip~l 37 (229)
|+.|++++- ++=+++.+|+..+.+++-.|++
T Consensus 20 I~lcqkspa--SagvR~fvEk~Y~~lKkaNP~l 50 (97)
T KOG3446|consen 20 IHLCQKSPA--SAGVREFVEKFYVNLKKANPDL 50 (97)
T ss_pred eeecCCCCc--chhHHHHHHHhhhhhhhcCCCC
Confidence 678999875 7889999999999999999986
No 27
>PF08695 Coa1: Cytochrome oxidase complex assembly protein 1; InterPro: IPR014807 Coa1 is an inner mitochondrial membrane protein that associates with Shy1 and is required for cytochrome oxidase complex IV assembly. It contains a conserved hydrophobic segment (amino acids 74-92) with the potential to form a membrane-spanning helix. The N terminus of Coa1 is rich in positively charged amino acids and could form an amphipathic alpha helix, characteristic of a mitochondrial presequence. A cleavage site for the mitochondrial processing peptidase is predicted adjacent to the presequence. Upon in vitro import into mitochondria, Coa1 is processed to a mature form, indicating that it possesses a cleavable presequence []. The eukaryotic cytochrome oxidase complex consists of 12-13 subunits, with three mitochondrial encoded subunits, Cox1-Cox3, forming the core enzyme. Translation of the Cox1 transcript requires the two promoters, Pet309 and Mss51, and the latter has an additional role in translational elongation. Coa1 is necessary for linking the activity of Mss51 to Cox1 insertion into the assembly complex [].
Probab=29.45 E-value=2e+02 Score=20.78 Aligned_cols=47 Identities=19% Similarity=0.346 Sum_probs=24.5
Q ss_pred EEEE-EEEEeeeeceeeEEeceeEEEEEEEEEEEeeCCeeEEEEEEeEEEEEeceEEEE
Q psy7348 108 NGNV-LLFPVRSRGDFWAAFGNVTGLAKLYATEQLRNETKFMKTERLGIQFKLSKSNFK 165 (229)
Q Consensus 108 ~g~i-~~~pi~g~G~~~~~~~~~~~~~~~~~~~~~~~g~~~l~i~~~~~~~~i~~~~~~ 165 (229)
.|+. +.+|++|. +..+++++.-...+++..|++.++++..+ .+-.++
T Consensus 66 ~g~a~~~~pV~G~----------k~~G~v~~~a~r~~~~~~W~~~~~~v~~~-~g~~I~ 113 (116)
T PF08695_consen 66 KGRADLSFPVKGP----------KGKGTVYVEATRSGGKDPWEILRLEVEID-DGQVID 113 (116)
T ss_pred CcEEEEEEEEEcC----------CCcEEEEEEEEecCCCCceEEEEEEEEeC-CCCEEe
Confidence 4444 35666665 33334433332223433578888888777 444443
No 28
>PF03923 Lipoprotein_16: Uncharacterized lipoprotein; InterPro: IPR005619 The function of this presumed lipoprotein is unknown. The family includes Escherichia coli YajG P36671 from SWISSPROT.
Probab=26.44 E-value=1e+02 Score=23.90 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=11.0
Q ss_pred chHHHHHHHHHhhhcHHHHH
Q psy7348 173 NNVIGEAMNIFLNQNAAEII 192 (229)
Q Consensus 173 ~~~l~~~~n~~iN~n~~~i~ 192 (229)
+.+++..+|+.+++...+++
T Consensus 130 ~~~ie~~ln~~l~~~l~~i~ 149 (159)
T PF03923_consen 130 NEEIEKALNKLLSDVLNDIA 149 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35566666666665444444
No 29
>PF14356 DUF4403: Domain of unknown function (DUF4403)
Probab=25.57 E-value=5.2e+02 Score=23.55 Aligned_cols=48 Identities=15% Similarity=0.211 Sum_probs=26.0
Q ss_pred HHHHHHHHHhhhcHHHHHHHhcHHHHHHH--HHHHHHHHHHHhccCCccc
Q psy7348 175 VIGEAMNIFLNQNAAEIIEEMKPAASAAI--GKHFKSFLNAAFLQIPLKV 222 (229)
Q Consensus 175 ~l~~~~n~~iN~n~~~i~~~~~p~i~~~~--~~~~~~~~N~i~~~~p~~~ 222 (229)
.+...++..++..-.++...+...|.+.+ ...+...++++..-+++..
T Consensus 138 ~i~~~v~~~i~~~~~~~~~~ld~~i~~~~~Lk~~v~~~W~~~~~P~~l~~ 187 (427)
T PF14356_consen 138 PITSLVDPVIDKQLNKITAQLDQAIRKSLDLKPRVEEAWNDLQRPIPLSK 187 (427)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHhCCceECCC
Confidence 34555555555555555555555554433 3555666666666555543
No 30
>PRK01905 DNA-binding protein Fis; Provisional
Probab=25.55 E-value=87 Score=21.14 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=20.0
Q ss_pred CChhhHHHHHHHHHHHhhcCCCCC
Q psy7348 13 PKINDCIKQTFNHLRKYLIQGIDE 36 (229)
Q Consensus 13 p~l~~Cl~~~~~~~~~~~~~Gip~ 36 (229)
-++++|+++.++.++-.+..|-|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~ 27 (77)
T PRK01905 4 HNIEQCIRDSLDQYFRDLDGSNPH 27 (77)
T ss_pred ccHHHHHHHHHHHHHHHHcCCCCc
Confidence 367999999999999988877655
No 31
>PF08989 DUF1896: Domain of unknown function (DUF1896); InterPro: IPR015082 This domain is found in a set of hypothetical bacterial proteins. ; PDB: 2APL_A.
Probab=24.73 E-value=52 Score=25.45 Aligned_cols=38 Identities=11% Similarity=0.105 Sum_probs=26.7
Q ss_pred cHHHHHHHhcHHHHHHHHHHHHHHHHHHhccCCcc-ccc
Q psy7348 187 NAAEIIEEMKPAASAAIGKHFKSFLNAAFLQIPLK-VWL 224 (229)
Q Consensus 187 n~~~i~~~~~p~i~~~~~~~~~~~~N~i~~~~p~~-~f~ 224 (229)
.|.|+.+++.+.-.+.++..+...+..+|++++++ +|-
T Consensus 81 lenEF~~evp~~~~~~~al~Llp~~~~vF~kY~l~DdFa 119 (144)
T PF08989_consen 81 LENEFEDEVPEEKRERFALKLLPACEPVFAKYELSDDFA 119 (144)
T ss_dssp HHHHSTTTS-TTHHHHHHHHHHHHHHHHHTTS---TTGG
T ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHHHHhcCCCCcccc
Confidence 35566666777788888888889999999999998 543
No 32
>PF10988 DUF2807: Protein of unknown function (DUF2807); InterPro: IPR021255 This bacterial family of proteins has no known function. ; PDB: 3JX8_A 3LJY_C 3LYC_A 3PET_A.
Probab=24.66 E-value=3.3e+02 Score=20.94 Aligned_cols=64 Identities=13% Similarity=0.248 Sum_probs=35.7
Q ss_pred eeEEecccceEEEE------EEEcCC-CcEEEEEEEecEEEEE----EEEEEEEEEEEEEeeeeceeeEEeceeE
Q psy7348 67 NLTIHGASNYTVLN------VKSDLN-KYRIDLALHLPHIEVT----GNYDVNGNVLLFPVRSRGDFWAAFGNVT 130 (229)
Q Consensus 67 n~~v~Gls~~~i~~------~~~~~~-~~~~~~~~~~P~l~~~----g~Y~~~g~i~~~pi~g~G~~~~~~~~~~ 130 (229)
.+.+.|...+++.. ++++.. .-.+.+.+.+..+.+. |++++.|+.-.+.+.-+|...+...++.
T Consensus 69 ~i~~~g~~~v~~~~~~~~~~l~i~~~g~~~~~~~~~~~~l~~~~~g~~~~~l~G~~~~l~i~~~g~~~~~~~~l~ 143 (181)
T PF10988_consen 69 SISASGSGSVTIDGTLKADDLDISLSGSGDVNLDLDAKNLNLSVSGSGKITLSGKADELNIEISGSGKVDASKLV 143 (181)
T ss_dssp EEEEESSCEEEE-S-EEEEEEEEEEESSCEEEEEEEEEEEEEEEESSCEEEEEEEEEEEEEEEESSCEEEEEEEE
T ss_pred EEEEcCCceEEEecccccceEEEEEcCCeEEEEEEEeeEEEEEecCceEEEEEEEEeeEEEEEccceEEEEeeeE
Confidence 34455555544444 333322 3455555666666555 3788888876566665556666666554
No 33
>PHA02600 FII major tail tube protein; Provisional
Probab=22.96 E-value=3.8e+02 Score=21.06 Aligned_cols=66 Identities=15% Similarity=0.180 Sum_probs=33.6
Q ss_pred EEEEEEEEEEE--EEEEEEEeeeeceeeE---------EeceeEEEEEEEEEEEeeCCeeEEEEEEeEEEEEeceEE
Q psy7348 98 HIEVTGNYDVN--GNVLLFPVRSRGDFWA---------AFGNVTGLAKLYATEQLRNETKFMKTERLGIQFKLSKSN 163 (229)
Q Consensus 98 ~l~~~g~Y~~~--g~i~~~pi~g~G~~~~---------~~~~~~~~~~~~~~~~~~~g~~~l~i~~~~~~~~i~~~~ 163 (229)
.+++.|.|+.. |....+.+.=.|.+.- .-.+.+.++.+.+-....||++-+.|+.+...+.+++..
T Consensus 82 ~l~~rga~q~~d~G~~~~v~~~~rG~~~~id~G~~k~G~~~~~~~~~~~~yyk~~vdG~~i~eID~~n~i~~vnGvD 158 (169)
T PHA02600 82 PLRFAGSYQRDDTGEVDAVEVVVRGRHKEIDMGTAKAGEDTEFKVTTSLTYYKLTVNGEELIEIDTVNMVEKVNGVD 158 (169)
T ss_pred EEEEEEEEEEccCCcEEEEEEEEEEEEEeeCCCCcccCCCCccEEEEEEEEEEEEECCEEEEEEECccCEEEECCEE
Confidence 46666766666 5444444333333311 112233344444444455888776666666666665443
No 34
>PF08564 CDC37_C: Cdc37 C terminal domain; InterPro: IPR013873 Cdc37 is a protein required for the activity of numerous eukaryotic protein kinases. This entry corresponds to the C-terminal domain whose function is unclear. It is found C-terminal to the Hsp90 chaperone (heat shock protein 90) binding domain IPR013874 from INTERPRO and the N-terminal kinase binding domain of Cdc37 IPR013855 from INTERPRO []. ; PDB: 1US7_B.
Probab=22.28 E-value=54 Score=23.70 Aligned_cols=33 Identities=18% Similarity=0.308 Sum_probs=15.3
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHhccCCcc
Q psy7348 189 AEIIEEMKPAASAAIGKHFKSFLNAAFLQIPLK 221 (229)
Q Consensus 189 ~~i~~~~~p~i~~~~~~~~~~~~N~i~~~~p~~ 221 (229)
.++++.+-|.+.+++.+-=.+.+|++|.++|.+
T Consensus 18 ~evFeslP~emq~Alet~~ld~vnkVl~~M~ve 50 (99)
T PF08564_consen 18 REVFESLPPEMQKALETGDLDEVNKVLGKMPVE 50 (99)
T ss_dssp -HHHHHS-TT------------HHHHHT--SSS
T ss_pred HHHHHHCCHHHHHHHHcCCHHHHHHHHHhCCHH
Confidence 478889999999999999999999999999976
No 35
>PF15167 DUF4581: Domain of unknown function (DUF4581)
Probab=22.01 E-value=40 Score=24.79 Aligned_cols=31 Identities=26% Similarity=0.713 Sum_probs=14.5
Q ss_pred CCcccCCCCCChhhHHHHHHHHHHHhhcCCCCCCC
Q psy7348 4 YIHPCTKASPKINDCIKQTFNHLRKYLIQGIDEIA 38 (229)
Q Consensus 4 ~~~~C~~~dp~l~~Cl~~~~~~~~~~~~~Gip~lg 38 (229)
||+.|...+ |.+-+.+.+..++|.+ |+|++.
T Consensus 70 yisscGKk~--l~e~leKvf~sf~pll--glpd~d 100 (128)
T PF15167_consen 70 YISSCGKKT--LTESLEKVFKSFRPLL--GLPDAD 100 (128)
T ss_pred HHHHhchhH--HHHHHHHHHHhhhhcc--CCCCCc
Confidence 556665443 3444444444444433 555543
No 36
>PF06501 Herpes_U55: Human herpesvirus U55 protein; InterPro: IPR009479 This family consists of several human herpesvirus U55 proteins. The function of this family is unknown.
Probab=21.33 E-value=5.9e+02 Score=22.84 Aligned_cols=76 Identities=13% Similarity=0.211 Sum_probs=50.3
Q ss_pred CCCCceeeCeEEEeeCC-CceEEEEEEEeeEEeccc----ceEEEEEEEc-CCCcEEEEEEEecEEEEEEEEEEEEEEEE
Q psy7348 40 PSIEPLIIPAMKMENGH-GAVRVRAIFSNLTIHGAS----NYTVLNVKSD-LNKYRIDLALHLPHIEVTGNYDVNGNVLL 113 (229)
Q Consensus 40 p~ldPl~i~~~~i~~~~-~~~~~~~~~~n~~v~Gls----~~~i~~~~~~-~~~~~~~~~~~~P~l~~~g~Y~~~g~i~~ 113 (229)
..+|-+.-+.+.+..+. ..+.++++|.|-.+.|+= +-.+..+-+= ..+-.+.+.+++.+-....+-++-|++++
T Consensus 269 k~~evfFp~~M~l~~n~~k~i~lrGtF~N~~avglfiP~~~~v~~~~pf~W~p~e~f~~~v~c~~~~~VTehDiiG~iyF 348 (432)
T PF06501_consen 269 KKMEVFFPDDMSLDENENKKIHLRGTFYNFNAVGLFIPDPNSVFQSIPFFWSPQESFTTKVSCDRSQRVTEHDIIGSIYF 348 (432)
T ss_pred ceEEEEccCceEecCCCceEEEEeeEEeccceeEEEeccCcceeeeccceecCCCceEEEEEeccceEEeccceeeEEEE
Confidence 34566666777777764 788999999999999973 2222212111 13456777777877666677788888876
Q ss_pred EE
Q psy7348 114 FP 115 (229)
Q Consensus 114 ~p 115 (229)
+|
T Consensus 349 i~ 350 (432)
T PF06501_consen 349 IP 350 (432)
T ss_pred EE
Confidence 55
No 37
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=21.06 E-value=4e+02 Score=20.65 Aligned_cols=30 Identities=13% Similarity=0.361 Sum_probs=15.4
Q ss_pred EEEEcCCCcEEEEEEEecEEEEEEEEEEEEEE
Q psy7348 80 NVKSDLNKYRIDLALHLPHIEVTGNYDVNGNV 111 (229)
Q Consensus 80 ~~~~~~~~~~~~~~~~~P~l~~~g~Y~~~g~i 111 (229)
++..+-+.++..+.+.++.++ ++|+.+-++
T Consensus 35 s~e~~g~e~~~~v~l~ig~l~--~~~~g~~~~ 64 (146)
T COG3427 35 SVETNGDEYTAKVKLKIGPLK--GTFSGRVRF 64 (146)
T ss_pred eeeecCCeEEEEEEEeeccee--EEEEEEEEE
Confidence 343443455666666665554 555544443
No 38
>PF14005 YpjP: YpjP-like protein
Probab=20.80 E-value=3.2e+02 Score=20.89 Aligned_cols=34 Identities=12% Similarity=0.055 Sum_probs=17.4
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHhccCCccc
Q psy7348 189 AEIIEEMKPAASAAIGKHFKSFLNAAFLQIPLKV 222 (229)
Q Consensus 189 ~~i~~~~~p~i~~~~~~~~~~~~N~i~~~~p~~~ 222 (229)
+.|...++....+.+-..+.+.+...++++|.+.
T Consensus 26 ~kI~p~Iedef~~~IlPkie~~I~~~~~~~~~~~ 59 (136)
T PF14005_consen 26 SKIGPVIEDEFREEILPKIEEAIEDLLEQYPEDD 59 (136)
T ss_pred HHHhHHHHHHHHHHHhHHHHHHHHHHHHhCChhh
Confidence 3333333333333444444556666677777764
Done!