RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7348
(229 letters)
>3e8t_A Takeout 1, takeout-like protein 1; transport protein; HET: UQ8;
1.30A {Epiphyas postvittana} PDB: 3e8w_A*
Length = 220
Score = 161 bits (408), Expect = 6e-50
Identities = 42/220 (19%), Positives = 82/220 (37%), Gaps = 7/220 (3%)
Query: 7 PCTKASPKINDCIKQTFNHLRKYLIQGIDEIAVPSIEPLIIPAMKMENGHGAVRVRAIFS 66
P K + + + C+ F + G+ + V ++ L + + ++
Sbjct: 4 PVEKCNLEDSACMTSAFQQALPTFVAGLPDHGVEVMDVLDLDDFAFDLSG----LQFTLK 59
Query: 67 NLTIHGASNYTVLNVKSDLNKYRIDLALHLPHIEVTGNYDVNGNVLLFPVRSRGDFWAAF 126
+ G + NVK DL K I++ HL V G+Y G +L+ P+ G
Sbjct: 60 EGKLKGLKGAVIDNVKWDLKKKNIEVDFHLD-ATVKGHYTAGGRILILPITGDGQMKLKL 118
Query: 127 GNVTGLAKL-YATEQLRNETKFMKTERLGIQFKL-SKSNFKIKDFINRNNVIGEAMNIFL 184
N+ + Y E+ + ++ + F + + F + + N N + + M FL
Sbjct: 119 KNIHIHLVVSYEMEKDAEGVDHVIFKKYTVTFDVKDNAQFGLTNLFNGNKELSDTMLTFL 178
Query: 185 NQNAAEIIEEMKPAASAAIGKHFKSFLNAAFLQIPLKVWL 224
NQN ++ EE A K + ++P+
Sbjct: 179 NQNWKQVSEEFGKPVMEAAAKKIFKNIKHFLAKVPIAEIA 218
>2rck_A JuvenIle hormone binding protein; hemolymph, JHBP-fold; HET: NAG;
2.44A {Galleria mellonella}
Length = 225
Score = 123 bits (309), Expect = 6e-35
Identities = 28/228 (12%), Positives = 74/228 (32%), Gaps = 20/228 (8%)
Query: 7 PCTKASPKINDCIKQTFNHLRKYLIQGIDEIAVPSIEPLIIPAMKMENGHGAVRVRAIFS 66
PC + +CI + QGI E + ++P+ IP +E + + ++
Sbjct: 9 PCDVSDI---ECISKATQVFLDNTYQGIPEYNIKKLDPITIP--SLEKSIEKINLNVRYN 63
Query: 67 NLTIHGASNYTVLNVKSDLNKYRIDLALHLPHIEVTGNYDVNGNVLLFPVRSRGDFWAAF 126
NL + G N + + + ++ + N+ G +++ +S +
Sbjct: 64 NLKVTGFKNQKISHFTLVRDTKAVNF-------KTKVNFTAEGKLVIELPKSSKTYTGEV 116
Query: 127 G----NVTGLAKLYATEQLRNETKFMKTERLGIQFK-LSKSNFKIKDFINRNNVIGEAMN 181
G A Y+ + + + + + + + + +
Sbjct: 117 TIEASAEGGAAYSYSVKTDDKGVEHYEAGPETVSCEIFGEPTLSVSSTLEDALKLDSDFK 176
Query: 182 IFLNQNAAEIIEEMKPAASAAIGKHFKSFLN---AAFLQIPLKVWLRD 226
+ ++ E K A + + ++ AA +P + ++
Sbjct: 177 KIFTEYGKQLTEGRKQTACRIVETVYAVSVHNIRAAARILPKSAYFKN 224
>2rqf_A HJHBP, hemolymph juvenIle hormone binding protein; HET: JH3; NMR
{Bombyx mori} PDB: 3a1z_A 3aos_A* 3aot_A*
Length = 227
Score = 122 bits (306), Expect = 2e-34
Identities = 24/229 (10%), Positives = 72/229 (31%), Gaps = 17/229 (7%)
Query: 2 AEYIHPCTKASPKINDCIKQTFNHLRKYLIQGIDEIAVPSIEPLIIPAMKMENGHGAVRV 61
+ PC C+ + +GI + + I+PL++ ++ + +
Sbjct: 5 DALLKPCKLGD---MQCLSSATEQFLEKTSKGIPQYDIWPIDPLVVTSLDVIAP-SDAGI 60
Query: 62 RAIFSNLTIHGASNYTVLNVKSDLNKYRIDLALHLPHIEVTGNYDVNGNVLLFPVRSRGD 121
F NL I G N + + + D + L + + + G++++
Sbjct: 61 VIRFKNLNITGLKNQQISDFQMDTKAKTVLL-------KTKADLHIVGDIVIELTEQSKS 113
Query: 122 FWAAF-GNVTGLAKLYATEQLRNETKFMKTERLGIQFKLSKSNFKIKDFINRNNVIGEAM 180
F + + + + L+N+ ++ + + + +++
Sbjct: 114 FTGLYTADTNVIGAVRYGYNLKNDDNGVQHFEVQ-PETFTCESIGEPKITLSSDLSS--- 169
Query: 181 NIFLNQNAAEIIEEMKPAASAAIGKHFKSFLNAAFLQIPLKVWLRDADL 229
+ + + +M+P + A ++ + + L
Sbjct: 170 ALEKDSGNNSLEPDMEPLKTLRQ-AAICKIAEACYISVVHNIRASAKIL 217
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.2 bits (93), Expect = 3e-04
Identities = 43/244 (17%), Positives = 79/244 (32%), Gaps = 78/244 (31%)
Query: 14 KINDCIKQTFNHL-----RKYLIQ-GI--DEIAVPS------------IEPLIIPAMKME 53
K+ I+ + N L RK + + +P+ + +++ K+
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV-VNKLH 412
Query: 54 NGHGAVRVRAIFSNLTIHG--------ASNYTVLNVKSDLNKYRI--------------D 91
+ V + S ++I N L+ +S ++ Y I D
Sbjct: 413 K-YSLVEKQPKESTISIPSIYLELKVKLENEYALH-RSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 92 ------LALHLPHIEVTGNYDVNGNVLL---F---PVRSRGDFWAAFGNVTGL---AKLY 136
+ HL +IE + V L F +R W A G++ K Y
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530
Query: 137 ATEQLRNETKFMKTERLGIQFKLSKSNFKIKDFINR---NNVIGEAMNIF---LNQNAAE 190
N+ K+ ERL ++ I DF+ + N + + ++ L
Sbjct: 531 KPYICDNDPKY---ERL-----VN----AILDFLPKIEENLICSKYTDLLRIALMAEDEA 578
Query: 191 IIEE 194
I EE
Sbjct: 579 IFEE 582
Score = 31.7 bits (71), Expect = 0.24
Identities = 36/256 (14%), Positives = 73/256 (28%), Gaps = 65/256 (25%)
Query: 2 AEYIHPCTKASPKINDCIKQTFNHLRKYLIQGIDEIAVPSIEPLIIPAMKMENGHGAVRV 61
E P + + + + +N + + + V ++P +K+ + +
Sbjct: 100 TEQRQP-SMMTRMYIEQRDRLYNDNQVF-----AKYNVSRLQPY----LKLRQA--LLEL 147
Query: 62 RAIFSNLTIHG--ASNYTVLNVKSDLNKYRIDLALHLPHIEVTGNYDVNGNVLLFPVRSR 119
R N+ I G S T + Y++ + + +
Sbjct: 148 RPA-KNVLIDGVLGSGKTWV-ALDVCLSYKVQCKM-------------DFKI-------- 184
Query: 120 GDFWAAFGNVTG-------LAKLY--ATEQLRNETKFMKTERLGI-QFKLSKSN-FKIKD 168
FW N L KL + + +L I + K K
Sbjct: 185 --FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 169 FIN--------RNNVIGEAMN----IFLNQNAAEIIEEMKPAASA--AIGKHFKSFLNAA 214
+ N +N A N I L ++ + + A + ++ H +
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 215 FLQIPLK-VWLRDADL 229
+ LK + R DL
Sbjct: 303 VKSLLLKYLDCRPQDL 318
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.017
Identities = 36/238 (15%), Positives = 58/238 (24%), Gaps = 94/238 (39%)
Query: 2 AEYIHPCTKASPKINDCIKQTFNHL-RKYLIQGIDEIAVPSIEPLIIPAMKMENGHGAVR 60
+ + P + + + YL +G D I H
Sbjct: 69 SSLVEP--SKVGQFDQVLNLCLTEFENCYL-EGND-----------I--------HALA- 105
Query: 61 VRAIFSNLTIHGASNYTVLNVKSDL-NKYRIDLALHLPHIEVTGNYDVNGNVLLFPVRSR 119
+ ++ T++ K + N + P +D N LF
Sbjct: 106 -------AKLLQENDTTLVKTKELIKNYITARIMAKRP-------FDKKSNSALFRAVGE 151
Query: 120 GD--FWAAF---GNVTG----LAKLYATEQLRNETKFMKTERLGIQFKLSKSNFKIKDFI 170
G+ A F GN L LY T + + D I
Sbjct: 152 GNAQLVAIFGGQGNTDDYFEELRDLYQTYHVL-----------------------VGDLI 188
Query: 171 NRNNVIGEAMNIFLNQNAAEIIEEMKPAASAAIGKHFKSFLNAAFLQIPLKVWLRDAD 228
+AE + E+ A K F LN + WL +
Sbjct: 189 KF---------------SAETLSELIRTTLDA-EKVFTQGLN-------ILEWLENPS 223
>2kwa_A Kinase A inhibitor; bacterial signal transduction, KIPI,
histidine kinase inhibi bacillus subtilis, transferase
inhibitor; NMR {Bacillus subtilis}
Length = 101
Score = 29.3 bits (66), Expect = 0.40
Identities = 5/36 (13%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 12 SPKINDCIKQTFNHLRKYLIQGIDEIAVPSIEPLII 47
+ ++N + ++ + G E +P+ L +
Sbjct: 26 NEQVNGIVHAAAAYIEEQPFPGFIEC-IPAFTSLTV 60
>1w61_A B-cell mitogen; racemase, racemase pyridoxal phosphate-independent,
stereo inversion, acid/base catalysis, homodimer,
alpha/beta domains; 2.1A {Trypanosoma cruzi} PDB: 1w62_A
Length = 414
Score = 29.4 bits (65), Expect = 0.92
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Query: 39 VPSIEPLIIPAMKMENGHGAVRVRAIFSNLTIHGASNYTVLNVKSDLNKYRIDLALHLPH 98
V + ++ G VR A + T SN +++NV S Y+ D+ + LP
Sbjct: 147 VSVPAKATNVPVVLDTPAGLVRGTAHLQSGTESEVSNASIINVPS--FLYQQDVVVVLPK 204
Query: 99 IEVTGNYDV 107
D+
Sbjct: 205 PYGEVRVDI 213
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 29.8 bits (67), Expect = 0.95
Identities = 7/78 (8%), Positives = 25/78 (32%), Gaps = 7/78 (8%)
Query: 132 LAKLYATEQLRNETK--FMKT--ERLGIQFKLSKSNFKIKDFINR-NNVI--GEAMNIFL 184
+ + K + + +SN F+ R N ++ + ++F
Sbjct: 1642 IHRHSNLSDFDMILKKAISDCSLKESRTCLIIDESNILETAFLERMNTLLANADIPDLFQ 1701
Query: 185 NQNAAEIIEEMKPAASAA 202
+ +++ ++ +
Sbjct: 1702 GEEYDKLLNNLRNKTRSL 1719
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 28.7 bits (64), Expect = 1.9
Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 7/78 (8%)
Query: 132 LAKLYATEQLRNETK--FMKT--ERLGIQFKLSKSNFKIKDFINR-NNVI--GEAMNIFL 184
+ Y + ++ + + + I F +SN F+ R N ++ GE +F
Sbjct: 1679 VNNNYKSSDFDDDLRMLLKRAGCKEEKICFIFDESNVLESSFLERMNTLLAGGEVPGLFE 1738
Query: 185 NQNAAEIIEEMKPAASAA 202
+ ++ K A
Sbjct: 1739 GEEFTALMHACKETAQRN 1756
>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD,
structural genomics, NPPSFA; HET: NAD MES; 1.60A
{Pyrococcus horikoshii} PDB: 1ww8_A*
Length = 439
Score = 27.9 bits (63), Expect = 3.3
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 168 DFINR-NNVIGEAMNIF---LNQNAAEIIEEMKPAASAAIGK 205
D+ N+ NN++G IF L+ A I + M AA+ AI
Sbjct: 321 DYPNQINNLLGFPG-IFRGALDVRARTITDSMIIAAAKAIAS 361
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 3.7
Identities = 9/36 (25%), Positives = 12/36 (33%), Gaps = 11/36 (30%)
Query: 19 IKQTFNHLRKYLIQGIDEIAVPSIEP-LIIPAMKME 53
+K+ L+ Y P L I A ME
Sbjct: 22 LKKLQASLKLY---------ADDSAPALAIKA-TME 47
>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase
(decarboxylating)); hypothetical protein, structural
genomics, PSI; 2.50A {Streptococcus pyogenes}
Length = 398
Score = 27.5 bits (62), Expect = 3.8
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 168 DFINR-NNVIGEAMNIF---LNQNAAEIIEEMKPAASAAI 203
DF N+ NNV+ IF L+ A I EM+ AA+ I
Sbjct: 314 DFPNQINNVLAFP-GIFRGALDARAKTITVEMQIAAAKGI 352
>3kl2_A Putative isochorismatase; structural genomics, unknown function,
PSI-2, protein struct initiative; 2.30A {Streptomyces
avermitilis}
Length = 226
Score = 26.9 bits (60), Expect = 4.3
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 6/40 (15%)
Query: 188 AAEIIEEMKPAASAAI--GKHFKSFLNAAFLQIPLKVWLR 225
A I++E+ P + GK F L LR
Sbjct: 112 GAAIVDELAPVNGDIVIEGKRGLD----TFASTNLDFILR 147
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP,
structural genomics, NPPSFA; 1.55A {Pyrococcus
horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Length = 74
Score = 25.7 bits (57), Expect = 4.8
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 45 LIIPAMKMEN 54
L++ AMKMEN
Sbjct: 34 LVLEAMKMEN 43
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet,
hammerhead, biocytin, transferase; NMR
{Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1
PDB: 1dd2_A 1o78_A
Length = 77
Score = 25.7 bits (57), Expect = 4.9
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 45 LIIPAMKMEN 54
L++ AMKME
Sbjct: 37 LVLEAMKMET 46
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase,
biotin, ATP-binding, disease mutation,
nucleotide-binding, mitochondrion; HET: PG4; 1.50A
{Homo sapiens}
Length = 94
Score = 25.8 bits (57), Expect = 5.1
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 45 LIIPAMKMEN 54
+I AMKM+N
Sbjct: 54 CVIEAMKMQN 63
>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba
histolytica}
Length = 487
Score = 27.2 bits (61), Expect = 5.4
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 13/44 (29%)
Query: 168 DFINR-NNVIGEAMNIF-------LNQNAAEIIEEMKPAASAAI 203
DF N+ NN +G F L A +I + M AAS A+
Sbjct: 352 DFPNQVNNSVG-----FPGILKGALIVRARKITDNMAIAASRAL 390
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase,
PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB:
3ac0_A*
Length = 845
Score = 27.2 bits (60), Expect = 5.9
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 30 LIQGIDEIAVPSIEPLIIPAMKMENG-HGAVRVRAIFSNLT 69
L+ +D IE L IPA+++ +G +G +R F +
Sbjct: 21 LLSAVDFWHTKKIERLGIPAVRVSDGPNG-IRGTKFFDGVP 60
>1dj0_A Pseudouridine synthase I; alpha/beta fold, RNA-binding motif,
RNA-modifying enzyme, lyase; 1.50A {Escherichia coli}
SCOP: d.265.1.1 PDB: 2nqp_A 2nr0_A 2nre_A
Length = 264
Score = 26.3 bits (59), Expect = 8.9
Identities = 8/20 (40%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 192 IEEMKPAASAAIGKH-FKSF 210
E M AA +G++ F SF
Sbjct: 139 AERMHRAAQCLLGENDFTSF 158
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.402
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,564,195
Number of extensions: 212474
Number of successful extensions: 412
Number of sequences better than 10.0: 1
Number of HSP's gapped: 404
Number of HSP's successfully gapped: 28
Length of query: 229
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 139
Effective length of database: 4,188,903
Effective search space: 582257517
Effective search space used: 582257517
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.6 bits)