RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7348
         (229 letters)



>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana)
          [TaxId: 3702]}
          Length = 64

 Score = 24.1 bits (52), Expect = 4.0
 Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 3/38 (7%)

Query: 55 GHGAVRVRAIFSNLTIHGASNYTVLNVKSDLNKYRIDL 92
          G      + I   + +      T  NV S L K+R+ L
Sbjct: 26 GVERAVPKKILDLMNVDKL---TRENVASHLQKFRVAL 60


>d1b09a_ b.29.1.5 (A:) C-reactive protein (CRP) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 206

 Score = 25.7 bits (55), Expect = 4.6
 Identities = 4/17 (23%), Positives = 8/17 (47%)

Query: 106 DVNGNVLLFPVRSRGDF 122
           D++    +FP  S   +
Sbjct: 3   DMSRKAFVFPKESDTSY 19


>d1t3qb2 d.133.1.1 (B:166-786) Quinoline 2-oxidoreductase large
           subunit QorL {Pseudomonas putida [TaxId: 303]}
          Length = 621

 Score = 25.7 bits (55), Expect = 5.2
 Identities = 15/62 (24%), Positives = 27/62 (43%)

Query: 1   MAEYIHPCTKASPKINDCIKQTFNHLRKYLIQGIDEIAVPSIEPLIIPAMKMENGHGAVR 60
           + +Y+ P T   P I     +T + L    I+G+ E A+ S    ++ A+     H  V 
Sbjct: 543 LMDYLIPTTLDVPDIRIRHLETPSPLVPGGIKGMGESAMISAPAAVVAAVNDALAHLEVV 602

Query: 61  VR 62
           + 
Sbjct: 603 IE 604


>d1wpxb1 b.17.1.1 (B:501-719) Carboxypeptidase Y inhibitor {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 219

 Score = 25.1 bits (54), Expect = 7.6
 Identities = 5/32 (15%), Positives = 10/32 (31%)

Query: 156 QFKLSKSNFKIKDFINRNNVIGEAMNIFLNQN 187
            +        +  +   NN+   A N F  + 
Sbjct: 187 NWGYGTPATGVGKWAKENNLQLVASNFFYAET 218


>d1nb5i_ d.17.1.2 (I:) Cystatin A (stefin A) {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 98

 Score = 23.9 bits (52), Expect = 9.5
 Identities = 4/21 (19%), Positives = 10/21 (47%)

Query: 190 EIIEEMKPAASAAIGKHFKSF 210
           EI++++KP       + +   
Sbjct: 18  EIVDKVKPQLEEKTNETYGKL 38


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0508    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 860,812
Number of extensions: 39181
Number of successful extensions: 93
Number of sequences better than 10.0: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 8
Length of query: 229
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 147
Effective length of database: 1,281,736
Effective search space: 188415192
Effective search space used: 188415192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.9 bits)