Query psy7349
Match_columns 78
No_of_seqs 106 out of 147
Neff 4.0
Searched_HMMs 46136
Date Sat Aug 17 00:28:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7349.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7349hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05254 UPF0203: Uncharacteri 100.0 1.5E-31 3.3E-36 167.9 5.3 53 26-78 1-54 (68)
2 KOG3481|consensus 100.0 5.7E-30 1.2E-34 168.0 5.2 56 23-78 2-58 (87)
3 PLN03079 Uncharacterized prote 100.0 1E-28 2.3E-33 163.3 6.0 52 27-78 12-63 (91)
4 PF02320 UCR_hinge: Ubiquinol- 95.8 0.043 9.4E-07 34.1 5.6 42 29-75 13-54 (65)
5 PF05051 COX17: Cytochrome C o 93.5 0.27 5.9E-06 29.5 4.8 34 32-75 11-44 (49)
6 PF06747 CHCH: CHCH domain; I 91.0 0.48 1E-05 24.9 3.4 35 33-75 1-35 (35)
7 PF08991 DUF1903: Domain of un 74.4 7.9 0.00017 24.1 4.1 37 31-75 2-38 (67)
8 PF09452 Mvb12: ESCRT-I subuni 74.1 1.6 3.6E-05 29.1 1.0 34 22-55 36-75 (91)
9 PF11326 DUF3128: Protein of u 64.1 13 0.00027 23.4 3.5 43 31-75 5-49 (84)
10 KOG3496|consensus 60.3 5.4 0.00012 25.7 1.3 34 32-75 34-67 (72)
11 PF08583 Cmc1: Cytochrome c ox 57.8 13 0.00027 21.7 2.5 39 31-76 11-49 (69)
12 PF10200 Ndufs5: NADH:ubiquino 56.8 25 0.00054 23.5 4.0 43 26-74 26-68 (96)
13 KOG4618|consensus 55.1 5.6 0.00012 25.7 0.7 38 30-75 21-58 (74)
14 PF01395 PBP_GOBP: PBP/GOBP fa 54.4 28 0.00062 21.0 3.8 36 34-78 86-121 (121)
15 COG4115 Uncharacterized protei 52.7 7.9 0.00017 25.6 1.1 11 2-12 36-46 (84)
16 PF07802 GCK: GCK domain; Int 49.6 21 0.00046 22.8 2.7 13 62-74 14-26 (76)
17 PF08583 Cmc1: Cytochrome c ox 49.4 26 0.00056 20.4 2.9 28 26-53 28-55 (69)
18 PF13982 YbfN: YbfN-like lipop 45.0 13 0.00028 24.8 1.2 15 32-46 7-21 (89)
19 PF06769 Plasmid_Txe: Plasmid 44.4 7.2 0.00016 24.9 -0.0 12 1-12 31-42 (80)
20 PF02297 COX6B: Cytochrome oxi 43.6 21 0.00046 22.0 2.0 24 29-53 38-62 (76)
21 KOG3481|consensus 42.6 21 0.00046 23.7 1.9 27 27-53 36-62 (87)
22 PF08793 2C_adapt: 2-cysteine 40.9 15 0.00033 20.4 0.9 10 2-11 12-21 (37)
23 KOG4695|consensus 40.0 68 0.0015 22.5 4.2 41 28-76 43-83 (122)
24 PF10189 DUF2356: Conserved pr 31.5 30 0.00065 26.4 1.5 19 41-59 57-75 (230)
25 KOG4149|consensus 31.1 91 0.002 22.1 3.7 41 29-75 66-106 (129)
26 KOG4110|consensus 31.0 48 0.001 23.2 2.3 39 30-74 33-71 (120)
27 PF01579 DUF19: Domain of unkn 30.4 77 0.0017 20.3 3.1 16 61-77 114-129 (160)
28 KOG4763|consensus 30.1 1.5E+02 0.0032 19.3 4.3 49 21-75 11-66 (77)
29 KOG3477|consensus 29.2 71 0.0015 21.6 2.8 54 13-74 10-63 (97)
30 PF07165 DUF1397: Protein of u 27.9 1.3E+02 0.0028 22.0 4.3 50 27-78 130-189 (213)
31 PF10203 Pet191_N: Cytochrome 26.2 39 0.00084 21.0 1.1 24 22-45 33-56 (68)
32 KOG4083|consensus 25.3 90 0.0019 23.4 3.0 41 29-77 144-184 (192)
33 PF06856 DUF1251: Protein of u 25.1 59 0.0013 22.5 2.0 28 5-33 61-88 (120)
34 PF07527 Hairy_orange: Hairy O 23.4 57 0.0012 17.9 1.3 12 66-77 4-15 (43)
35 KOG3584|consensus 23.3 1.1E+02 0.0025 24.7 3.5 18 30-47 303-320 (348)
36 PF05946 TcpA: Toxin-coregulat 20.5 32 0.0007 24.2 -0.1 9 1-9 14-22 (127)
No 1
>PF05254 UPF0203: Uncharacterised protein family (UPF0203); InterPro: IPR007918 This is a family of small highly conserved proteins. In Saccharomyces cerevisiae (Baker's yeast) the gene YKL053C-A (MDM35) O60200 from SWISSPROT is one of the genes essential for maintenance of normal mitochondrial distribution and morphology (MDM) []; wherease in Homo sapiens (Human), p53CSV, O43715 from SWISSPROT is a direct transcriptional target for p53 and appears to be a cell-survival mediator in response to genotoxic stress including low-levels of DNA damage. It is suggested that p53CSV modulates the apoptotic pathway through interaction with HSP70 and Apaf-1 thereby inhibiting activation of procaspase-3 and procaspase-9 [].
Probab=99.97 E-value=1.5e-31 Score=167.90 Aligned_cols=53 Identities=57% Similarity=1.146 Sum_probs=51.4
Q ss_pred cc-cchHHhHHHHHHHHHHHHHHHhhcccCCCCCCCCCHHHHHHHHHHHHHhhC
Q psy7349 26 MN-SVSKECTQLKHQYDECFQTWFTEKFLKGDTDDSMCSPLLKVYQSCVQNCLI 78 (78)
Q Consensus 26 M~-S~~~eCt~lK~~YD~CFn~WfsEkFLkG~~~~~~C~~lf~~Yq~Cv~kaLk 78 (78)
|+ |++|+|++||++||+|||+||+|+||+|++.+++|+++|++||+||++||+
T Consensus 1 M~~S~~~eC~~lK~~YD~CFn~WfsekfLkG~~~~~~C~~~~~~Y~~Cv~~al~ 54 (68)
T PF05254_consen 1 MSASLAPECTELKEKYDQCFNKWFSEKFLKGDSSDNECGELFKEYQQCVQKALK 54 (68)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 77 999999999999999999999999999999999999999999999999985
No 2
>KOG3481|consensus
Probab=99.96 E-value=5.7e-30 Score=168.03 Aligned_cols=56 Identities=57% Similarity=1.115 Sum_probs=53.2
Q ss_pred ccccc-cchHHhHHHHHHHHHHHHHHHhhcccCCCCCCCCCHHHHHHHHHHHHHhhC
Q psy7349 23 GDKMN-SVSKECTQLKHQYDECFQTWFTEKFLKGDTDDSMCSPLLKVYQSCVQNCLI 78 (78)
Q Consensus 23 ~~~M~-S~~~eCt~lK~~YD~CFn~WfsEkFLkG~~~~~~C~~lf~~Yq~Cv~kaLk 78 (78)
+|+|+ |++|+|++||.+||+|||+||+|+||||+++.++|..||+.|++||++||+
T Consensus 2 ~d~mssSv~~eCt~lk~~YD~CFn~Wf~eKflKG~~~~~pC~~l~k~Y~~Cv~kal~ 58 (87)
T KOG3481|consen 2 SDRMSSSVFPECTDLKQKYDQCFNEWFSEKFLKGDSSGEPCSRLFKVYKQCVQKALK 58 (87)
T ss_pred CccccccccccchHHHHHHHHHHHHHHHHHhcCCccccCcHHHHHHHHHHHHHHHHh
Confidence 46666 999999999999999999999999999999999999999999999999985
No 3
>PLN03079 Uncharacterized protein At4g33100; Provisional
Probab=99.95 E-value=1e-28 Score=163.27 Aligned_cols=52 Identities=33% Similarity=0.818 Sum_probs=49.3
Q ss_pred ccchHHhHHHHHHHHHHHHHHHhhcccCCCCCCCCCHHHHHHHHHHHHHhhC
Q psy7349 27 NSVSKECTQLKHQYDECFQTWFTEKFLKGDTDDSMCSPLLKVYQSCVQNCLI 78 (78)
Q Consensus 27 ~S~~~eCt~lK~~YD~CFn~WfsEkFLkG~~~~~~C~~lf~~Yq~Cv~kaLk 78 (78)
.|++++|++||++||+|||+||+|+||||++.+++|+++|++||+||++||+
T Consensus 12 ~~~g~eCtelK~~YD~CFN~WYsEkFLKG~~~~~eC~~~w~~Yq~Cv~~aL~ 63 (91)
T PLN03079 12 RSSTSPCAELRTAYHNCFNRWYSEKFVKGQWDKEDCVAEWHKYRACLSEHLE 63 (91)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHHHHHHH
Confidence 4667889999999999999999999999999999999999999999999985
No 4
>PF02320 UCR_hinge: Ubiquinol-cytochrome C reductase hinge protein; InterPro: IPR023184 The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is a respiratory multienzyme complex []. The bc1 complex contains 11 subunits; 3 respiratory subunits (cytochrome B, cytochrome C1, Rieske protein), 2 core proteins and 6 low molecular weight proteins. This family represents the 'hinge' protein of the complex which is thought to mediate formation of the cytochrome c1 and cytochrome c complex. Proteins in this entry from an alpha-helical hairpin. This entry represents the structural domain found in these proteins.; PDB: 1BCC_H 1SQP_H 1SQB_H 1BE3_H 2A06_U 1L0L_H 2BCC_H 2FYU_H 1PPJ_U 2YBB_H ....
Probab=95.80 E-value=0.043 Score=34.06 Aligned_cols=42 Identities=26% Similarity=0.529 Sum_probs=33.8
Q ss_pred chHHhHHHHHHHHHHHHHHHhhcccCCCCCCCCCHHHHHHHHHHHHH
Q psy7349 29 VSKECTQLKHQYDECFQTWFTEKFLKGDTDDSMCSPLLKVYQSCVQN 75 (78)
Q Consensus 29 ~~~eCt~lK~~YD~CFn~WfsEkFLkG~~~~~~C~~lf~~Yq~Cv~k 75 (78)
..+.|..+++.|+.|-.+==+ +......|.++|-.|..||..
T Consensus 13 ~~~~C~~~~~~y~~C~eRV~~-----~~~~~e~C~ee~fd~~hCvD~ 54 (65)
T PF02320_consen 13 ETPKCAKLKHHYDECVERVNS-----RSETKEDCVEEYFDLVHCVDH 54 (65)
T ss_dssp TSHHHHHHHHHHHHHHHHHHH-----CSSSSG-SHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHhc-----CCCCCCCcHHHHHHHHHHHHH
Confidence 468899999999999877554 444566799999999999975
No 5
>PF05051 COX17: Cytochrome C oxidase copper chaperone (COX17); InterPro: IPR007745 Cox17p is essential for the assembly of functional cytochrome c oxidase (CCO) and for delivery of copper ions to the mitochondrion for insertion into the enzyme in Saccharomyces cerevisiae [].; GO: 0005507 copper ion binding, 0016531 copper chaperone activity, 0006825 copper ion transport, 0005758 mitochondrial intermembrane space; PDB: 1U97_A 1U96_A 1Z2G_A 2RNB_A 2RN9_A 2LGQ_A 2L0Y_B.
Probab=93.50 E-value=0.27 Score=29.51 Aligned_cols=34 Identities=26% Similarity=0.710 Sum_probs=27.7
Q ss_pred HhHHHHHHHHHHHHHHHhhcccCCCCCCCCCHHHHHHHHHHHHH
Q psy7349 32 ECTQLKHQYDECFQTWFTEKFLKGDTDDSMCSPLLKVYQSCVQN 75 (78)
Q Consensus 32 eCt~lK~~YD~CFn~WfsEkFLkG~~~~~~C~~lf~~Yq~Cv~k 75 (78)
.|-+-|++=|.|+-. .|.. .|.++.++|++|+..
T Consensus 11 aCpetK~aRDeC~l~-------~g~e---~C~~~Ieahk~Cmr~ 44 (49)
T PF05051_consen 11 ACPETKKARDECILF-------NGEE---DCKELIEAHKACMRG 44 (49)
T ss_dssp TSHHHHHHHHHHHHH-------C-CC---CCHHHHHHHHHHHHH
T ss_pred cChhHHHHhHhhHHh-------cChH---HHHHHHHHHHHHHHH
Confidence 589999999999865 3443 399999999999975
No 6
>PF06747 CHCH: CHCH domain; InterPro: IPR010625 A conserved motif was identified in the LOC118487 protein was called the CHCH motif. Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extended) and C (C-terminal extended) subgroups. All three sub-groups of proteins have in common that they contain a predicted conserved [coiled coil 1]-[helix 1]-[coiled coil 2]-[helix 2] domain (CHCH domain). Within each helix of the CHCH domain, there are two cysteines present in a C-X9-C motif. The N-group contains an additional double helix domain, and each helix contains the C-X9-C motif. This family contains a number of characterised proteins: Cox19 protein - a nuclear gene of Saccharomyces cerevisiae, codes for an 11 kDa protein (Cox19p) required for expression of cytochrome oxidase. Because cox19 mutants are able to synthesise the mitochondrial and nuclear gene products of cytochrome oxidase, Cox19p probably functions post-translationally during assembly of the enzyme. Cox19p is present in the cytoplasm and mitochondria, where it exists as a soluble intermembrane protein. This dual location is similar to what was previously reported for Cox17p, a low molecular weight copper protein thought to be required for maturation of the CuA centre of subunit 2 of cytochrome oxidase. Cox19p have four conserved potential metal ligands, these are three cysteines and one histidine. Mrp10 - belongs to the class of yeast mitochondrial ribosomal proteins that are essential for translation []. Eukaryotic NADH-ubiquinone oxidoreductase 19 kDa (NDUFA8) subunit []. The CHCH domain was previously called DUF657 []. ; PDB: 2ZXT_A 3A3C_A 2L0Y_A 2K3J_A.
Probab=90.95 E-value=0.48 Score=24.89 Aligned_cols=35 Identities=26% Similarity=0.497 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHHhhcccCCCCCCCCCHHHHHHHHHHHHH
Q psy7349 33 CTQLKHQYDECFQTWFTEKFLKGDTDDSMCSPLLKVYQSCVQN 75 (78)
Q Consensus 33 Ct~lK~~YD~CFn~WfsEkFLkG~~~~~~C~~lf~~Yq~Cv~k 75 (78)
|.+....|=+|+...= .+...|.++++.|++|+++
T Consensus 1 C~~e~~~~~~Cl~~n~--------~~~~~C~~~~~~~~~C~~~ 35 (35)
T PF06747_consen 1 CAEEMKAYLACLKENN--------FDWSKCRKEFKAYKECRMK 35 (35)
T ss_dssp THHHHHHHHHHHHCH---------SSTCCCHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHCC--------CcHHhhHHHHHHHHHHhhC
Confidence 5666777777765432 1356799999999999864
No 7
>PF08991 DUF1903: Domain of unknown function (DUF1903); InterPro: IPR009069 The mature-T-cell-proliferation (MTCP1) putative oncogene was identified for its involvement in t(X:14)(q28;q11)-associated T-cell leukaemia []. MTCP1 is alternatively spliced to produce two completely distinct proteins: the small mitochondrial protein, p8MTCP1, and the protein p13MTCP1, which shows strong homology to another oncogene product, p14TCL1. While p13MTCP1 expression appears to be restricted to mature T-cell proliferation with t(X,14) translocations, the mitochondrial p8MTCP1 is expressed at low levels in most human tissues, and is over-expressed in the proliferating T-cells. The biological function of p8MTCP1 is still unknown, but it appears to play a role in oncogenesis. The structure of p8MTCP1 reveals a disulphide-rich, irregular array of three helices [].; PDB: 2HP8_A 1EI0_A 1HP8_A.
Probab=74.40 E-value=7.9 Score=24.10 Aligned_cols=37 Identities=19% Similarity=0.579 Sum_probs=25.1
Q ss_pred HHhHHHHHHHHHHHHHHHhhcccCCCCCCCCCHHHHHHHHHHHHH
Q psy7349 31 KECTQLKHQYDECFQTWFTEKFLKGDTDDSMCSPLLKVYQSCVQN 75 (78)
Q Consensus 31 ~eCt~lK~~YD~CFn~WfsEkFLkG~~~~~~C~~lf~~Yq~Cv~k 75 (78)
++|.+.-.+-.+|.+ +-+.+.+.|.+.|++|+.|.+.
T Consensus 2 ~PC~~~Ac~iq~CL~--------~N~Yd~~kC~~~i~~l~~Cck~ 38 (67)
T PF08991_consen 2 DPCQKEACAIQKCLQ--------RNNYDESKCQDYIDALYECCKK 38 (67)
T ss_dssp -TTHHHHHHHHHHHH--------HTTT-CCCTHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHH--------HcCCCHHHHHHHHHHHHHHHHH
Confidence 345555556666665 2445677899999999999865
No 8
>PF09452 Mvb12: ESCRT-I subunit Mvb12; InterPro: IPR019014 The endosomal sorting complex required for transport (ESCRT) complexes play a critical role in receptor down-regulation and retroviral budding. A new component of the ESCRT-I complex was identified [], multivesicular body sorting factor of 12 kDa (Mvb12), which binds to the coiled-coil domain of the ESCRT-I subunit vacuolar protein sorting 23 (Vps23) []. ; PDB: 2P22_D.
Probab=74.05 E-value=1.6 Score=29.11 Aligned_cols=34 Identities=24% Similarity=0.562 Sum_probs=23.3
Q ss_pred cccccccchHHhHHHHHHH------HHHHHHHHhhcccCC
Q psy7349 22 FGDKMNSVSKECTQLKHQY------DECFQTWFTEKFLKG 55 (78)
Q Consensus 22 ~~~~M~S~~~eCt~lK~~Y------D~CFn~WfsEkFLkG 55 (78)
..++.+....||.++-+.- -.=|+.||.|+||+-
T Consensus 36 t~em~~~W~~ECd~i~~~~~~hd~~~k~Fd~WY~e~yLs~ 75 (91)
T PF09452_consen 36 TKEMFQPWYEECDQIVESCEQHDKSSKEFDQWYKEKYLSK 75 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHS---
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhcc
Confidence 3456778889999876542 235999999999963
No 9
>PF11326 DUF3128: Protein of unknown function (DUF3128); InterPro: IPR021475 This eukaryotic family of proteins has no known function.
Probab=64.10 E-value=13 Score=23.38 Aligned_cols=43 Identities=19% Similarity=0.410 Sum_probs=31.9
Q ss_pred HHhHHHHHHHHHHHH--HHHhhcccCCCCCCCCCHHHHHHHHHHHHH
Q psy7349 31 KECTQLKHQYDECFQ--TWFTEKFLKGDTDDSMCSPLLKVYQSCVQN 75 (78)
Q Consensus 31 ~eCt~lK~~YD~CFn--~WfsEkFLkG~~~~~~C~~lf~~Yq~Cv~k 75 (78)
+.|...-.++..|+. .=|...|.-|... .|.+.|+.|..|+.-
T Consensus 5 ~sC~~~fd~~~~C~S~~~q~~~yYryG~~~--~C~~~~~df~~C~~~ 49 (84)
T PF11326_consen 5 MSCMDAFDELWFCYSPGGQFRNYYRYGEFD--DCSQWWEDFKFCLRW 49 (84)
T ss_pred ccHHHHHHHHHHcCCchHhheeeeecCCCc--cHHHHHHHHHHHHHh
Confidence 468888888888863 2344455566654 599999999999974
No 10
>KOG3496|consensus
Probab=60.26 E-value=5.4 Score=25.67 Aligned_cols=34 Identities=21% Similarity=0.634 Sum_probs=28.2
Q ss_pred HhHHHHHHHHHHHHHHHhhcccCCCCCCCCCHHHHHHHHHHHHH
Q psy7349 32 ECTQLKHQYDECFQTWFTEKFLKGDTDDSMCSPLLKVYQSCVQN 75 (78)
Q Consensus 32 eCt~lK~~YD~CFn~WfsEkFLkG~~~~~~C~~lf~~Yq~Cv~k 75 (78)
.|-+-|+.=|+|.-. ..+..|+.+-+.|..|+..
T Consensus 34 aCpetK~~RDaCIle----------~gee~C~~lIEahk~CMr~ 67 (72)
T KOG3496|consen 34 ACPETKKARDACILE----------NGEEKCGKLIEAHKECMRA 67 (72)
T ss_pred cCCchhhhhhhHhhh----------cCHHHHHHHHHHHHHHHHH
Confidence 588999999999865 2344699999999999875
No 11
>PF08583 Cmc1: Cytochrome c oxidase biogenesis protein Cmc1 like; InterPro: IPR013892 Cmc1 is a metallo-chaperone like protein which is known to localise to the inner mitochondrial membrane in Saccharomyces cerevisiae. It is essential for full expression of cytochrome c oxidase and respiration []. Cmc1 contains two Cx9C motifs and is able to bind copper(I). Cmc1 is thought to play a role in mitochondrial copper trafficking and transfer to cytochrome c oxidase.
Probab=57.78 E-value=13 Score=21.74 Aligned_cols=39 Identities=26% Similarity=0.526 Sum_probs=25.4
Q ss_pred HHhHHHHHHHHHHHHHHHhhcccCCCCCCCCCHHHHHHHHHHHHHh
Q psy7349 31 KECTQLKHQYDECFQTWFTEKFLKGDTDDSMCSPLLKVYQSCVQNC 76 (78)
Q Consensus 31 ~eCt~lK~~YD~CFn~WfsEkFLkG~~~~~~C~~lf~~Yq~Cv~ka 76 (78)
+.|.++=++|.+|... +.=+++. .|.++.++-++||.+.
T Consensus 11 ~~C~~~i~~~~~C~~~-~~~~~~~------~C~~~~~~m~~Cl~~~ 49 (69)
T PF08583_consen 11 KKCADEIEAFAECHKD-RTFKFVG------KCREEKKAMNECLKEE 49 (69)
T ss_pred HHhHHHHHHHHHHHhc-chHHHHH------hhhHHHHHHHHHHHHH
Confidence 6777777777777775 2123332 3777777777777653
No 12
>PF10200 Ndufs5: NADH:ubiquinone oxidoreductase, NDUFS5-15kDa; InterPro: IPR019342 Proteins in this entry form part of the NADH:ubiquinone oxidoreductase complex I. Complex I is the first multisubunit inner membrane protein complex of the mitochondrial electron transport chain and it transfers two electrons from NADH to ubiquinone. The mammalian complex I is composed of 45 different subunits. The proteins in this entry represent a component of the iron-sulphur (IP) fragment of the enzyme, that is not involved in catalysis. These proteins carry four highly conserved cysteine residues, but these do not appear to be in a configuration which would favour metal binding, so the exact function of the protein is uncertain [].
Probab=56.83 E-value=25 Score=23.48 Aligned_cols=43 Identities=16% Similarity=0.456 Sum_probs=30.6
Q ss_pred cccchHHhHHHHHHHHHHHHHHHhhcccCCCCCCCCCHHHHHHHHHHHH
Q psy7349 26 MNSVSKECTQLKHQYDECFQTWFTEKFLKGDTDDSMCSPLLKVYQSCVQ 74 (78)
Q Consensus 26 M~S~~~eCt~lK~~YD~CFn~WfsEkFLkG~~~~~~C~~lf~~Yq~Cv~ 74 (78)
..-...-|-.+-.+|=.|... + .+.....+|..++++|.+||-
T Consensus 26 ~~~~~~RC~~FE~e~i~C~~~-----~-G~~r~kKeC~~e~EDy~EClh 68 (96)
T PF10200_consen 26 PYKQPSRCHPFEKEWIECAEA-----Y-GQTRGKKECKLELEDYYECLH 68 (96)
T ss_pred CCCCCCchHHHHHHHHHHHHH-----H-cccchhhhchhHHhHHHHHHh
Confidence 344566788888888888532 1 122345789999999999985
No 13
>KOG4618|consensus
Probab=55.14 E-value=5.6 Score=25.74 Aligned_cols=38 Identities=21% Similarity=0.477 Sum_probs=26.2
Q ss_pred hHHhHHHHHHHHHHHHHHHhhcccCCCCCCCCCHHHHHHHHHHHHH
Q psy7349 30 SKECTQLKHQYDECFQTWFTEKFLKGDTDDSMCSPLLKVYQSCVQN 75 (78)
Q Consensus 30 ~~eCt~lK~~YD~CFn~WfsEkFLkG~~~~~~C~~lf~~Yq~Cv~k 75 (78)
...|-.--..-=+|.++ -+.+.+.|...|..|+.|-+.
T Consensus 21 ~nPCl~es~aSfkCLee--------nnyDRsKCq~yFd~YkeCKkf 58 (74)
T KOG4618|consen 21 YNPCLLESSASFKCLEE--------NNYDRSKCQDYFDVYKECKKF 58 (74)
T ss_pred CChHHHHHHHHHHHHHh--------cCccHHHHHHHHHHHHHHHHH
Confidence 34565554544455443 467788999999999999653
No 14
>PF01395 PBP_GOBP: PBP/GOBP family; InterPro: IPR006170 The olfactory receptors of terrestrial animals exist in an aqueous environment, yet detect odorants that are primarily hydrophobic. The aqueous solubility of hydrophobic odorants is thought to be greatly enhanced via odorant binding proteins which exist in the extracellular fluid surrounding the odorant receptors []. This family is composed of pheromone binding proteins (PBP), which are male-specific and associate with pheromone-sensitive neurons and general-odorant binding proteins (GOBP). ; GO: 0005549 odorant binding; PDB: 2KPH_A 3NHT_A 3NHI_A 3NGV_A 3K1E_B 3DZT_A 3DYE_A 3DXL_A 3DY9_A 3BJH_A ....
Probab=54.40 E-value=28 Score=20.97 Aligned_cols=36 Identities=17% Similarity=0.452 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCCCCCCHHHHHHHHHHHHHhhC
Q psy7349 34 TQLKHQYDECFQTWFTEKFLKGDTDDSMCSPLLKVYQSCVQNCLI 78 (78)
Q Consensus 34 t~lK~~YD~CFn~WfsEkFLkG~~~~~~C~~lf~~Yq~Cv~kaLk 78 (78)
..++..++.|.. ......++|..-|+-| +|+.++.|
T Consensus 86 ~~~~~~~~~C~~--------~~~~~~~~C~~a~~~~-~C~~~~~~ 121 (121)
T PF01395_consen 86 DEVKKIIEKCNA--------ESEKGEDKCERAYKFY-KCFLKNKK 121 (121)
T ss_dssp HHHHHHHHHHHH--------HSTSSSSHHHHHHHHH-HHHHHHTT
T ss_pred HHHHHHHHhCCC--------CCCCCcCHHHHHHHHH-ccHHhhcC
Confidence 888999999988 2334456899999954 59988754
No 15
>COG4115 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.72 E-value=7.9 Score=25.59 Aligned_cols=11 Identities=64% Similarity=1.283 Sum_probs=10.0
Q ss_pred CCCCCCCCCCC
Q psy7349 2 RNPFSGTSKPE 12 (78)
Q Consensus 2 ~~~~~~~~~~~ 12 (78)
||||.|.-||+
T Consensus 36 rdPfkg~gkpE 46 (84)
T COG4115 36 RDPFKGIGKPE 46 (84)
T ss_pred cCccccCCCCc
Confidence 89999999986
No 16
>PF07802 GCK: GCK domain; InterPro: IPR012891 This domain is found in proteins carrying other domains known to be involved in intracellular signalling pathways (such as IPR001806 from INTERPRO) indicating that it might also be involved in these pathways. It has 4 highly conserved cysteine residues, suggesting that it can bind zinc ions. Moreover, it is found repeated in some members of this family (such as Q9LMF3 from SWISSPROT); this may indicate that these domains are able to interact with one another, raising the possibility that this domain mediates heterodimerisation.
Probab=49.56 E-value=21 Score=22.83 Aligned_cols=13 Identities=23% Similarity=0.853 Sum_probs=7.4
Q ss_pred CHHHHHHHHHHHH
Q psy7349 62 CSPLLKVYQSCVQ 74 (78)
Q Consensus 62 C~~lf~~Yq~Cv~ 74 (78)
|.+-|.++..|+.
T Consensus 14 Cke~F~awe~C~~ 26 (76)
T PF07802_consen 14 CKESFTAWEDCVD 26 (76)
T ss_pred hhHHHHHHHHHHH
Confidence 5555555555554
No 17
>PF08583 Cmc1: Cytochrome c oxidase biogenesis protein Cmc1 like; InterPro: IPR013892 Cmc1 is a metallo-chaperone like protein which is known to localise to the inner mitochondrial membrane in Saccharomyces cerevisiae. It is essential for full expression of cytochrome c oxidase and respiration []. Cmc1 contains two Cx9C motifs and is able to bind copper(I). Cmc1 is thought to play a role in mitochondrial copper trafficking and transfer to cytochrome c oxidase.
Probab=49.38 E-value=26 Score=20.38 Aligned_cols=28 Identities=14% Similarity=0.306 Sum_probs=22.6
Q ss_pred cccchHHhHHHHHHHHHHHHHHHhhccc
Q psy7349 26 MNSVSKECTQLKHQYDECFQTWFTEKFL 53 (78)
Q Consensus 26 M~S~~~eCt~lK~~YD~CFn~WfsEkFL 53 (78)
.-++.-.|++.+...+.|+..++.+..+
T Consensus 28 ~~~~~~~C~~~~~~m~~Cl~~~~~~~~~ 55 (69)
T PF08583_consen 28 TFKFVGKCREEKKAMNECLKEERNDERF 55 (69)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHhhHHH
Confidence 3456678999999999999999976543
No 18
>PF13982 YbfN: YbfN-like lipoprotein
Probab=44.98 E-value=13 Score=24.81 Aligned_cols=15 Identities=40% Similarity=0.791 Sum_probs=12.5
Q ss_pred HhHHHHHHHHHHHHH
Q psy7349 32 ECTQLKHQYDECFQT 46 (78)
Q Consensus 32 eCt~lK~~YD~CFn~ 46 (78)
+=..||+.|-+|.|.
T Consensus 7 eds~lk~aYsaCInt 21 (89)
T PF13982_consen 7 EDSKLKQAYSACINT 21 (89)
T ss_pred HHHHHHHHHHHHHhh
Confidence 445699999999996
No 19
>PF06769 Plasmid_Txe: Plasmid encoded toxin Txe; InterPro: IPR009614 The Axe-Txe pair in Enterococcus faecium (Streptococcus faecium) and the homologous YefM-YoeB pair in Escherichia coli have been shown to act as an antitoxin-toxin pair. This family describes the toxin component. Nearly every example found is next to an identifiable antitoxin, as indicated by match to IPR006442 from INTERPRO [].; GO: 0004519 endonuclease activity, 0006401 RNA catabolic process; PDB: 3OEI_L 2A6R_F 2A6Q_E 2A6S_D.
Probab=44.36 E-value=7.2 Score=24.93 Aligned_cols=12 Identities=67% Similarity=1.221 Sum_probs=8.3
Q ss_pred CCCCCCCCCCCC
Q psy7349 1 MRNPFSGTSKPE 12 (78)
Q Consensus 1 ~~~~~~~~~~~~ 12 (78)
+||||.|.-||+
T Consensus 31 ~r~P~~G~gkpE 42 (80)
T PF06769_consen 31 KRNPFTGIGKPE 42 (80)
T ss_dssp HHSTTSSTT--E
T ss_pred HhcccCCCCCCc
Confidence 379999998886
No 20
>PF02297 COX6B: Cytochrome oxidase c subunit VIb; InterPro: IPR003213 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex that is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptide subunits. One of these subunits is the potentially haem-binding subunit, VIb, which is encoded in the nucleus []. ; GO: 0004129 cytochrome-c oxidase activity, 0005739 mitochondrion; PDB: 1OCC_U 1OCR_U 2DYS_H 3ASO_H 3AG3_U 2EIL_H 2EIJ_U 3AG2_U 3ABM_U 2EIN_U ....
Probab=43.59 E-value=21 Score=22.01 Aligned_cols=24 Identities=21% Similarity=0.692 Sum_probs=18.3
Q ss_pred chHHhHHHHHHHHH-HHHHHHhhccc
Q psy7349 29 VSKECTQLKHQYDE-CFQTWFTEKFL 53 (78)
Q Consensus 29 ~~~eCt~lK~~YD~-CFn~WfsEkFL 53 (78)
....|..++..|.+ |=..|. ++|-
T Consensus 38 ~~~~C~~~~~~ye~~Cp~sWv-~~f~ 62 (76)
T PF02297_consen 38 DESACKYFRKNYESNCPSSWV-KYFD 62 (76)
T ss_dssp TGGGGHHHHHHHHHHS-HHHH-HHHH
T ss_pred chhhhHHHHHHHHHhCcHHHH-HHHH
Confidence 45779999999965 999998 4664
No 21
>KOG3481|consensus
Probab=42.61 E-value=21 Score=23.74 Aligned_cols=27 Identities=26% Similarity=0.549 Sum_probs=22.0
Q ss_pred ccchHHhHHHHHHHHHHHHHHHhhccc
Q psy7349 27 NSVSKECTQLKHQYDECFQTWFTEKFL 53 (78)
Q Consensus 27 ~S~~~eCt~lK~~YD~CFn~WfsEkFL 53 (78)
.|.+++|..|=+.|.+|.++=...+-+
T Consensus 36 ~~~~~pC~~l~k~Y~~Cv~kal~tk~i 62 (87)
T KOG3481|consen 36 DSSGEPCSRLFKVYKQCVQKALKTKRI 62 (87)
T ss_pred ccccCcHHHHHHHHHHHHHHHHhhcCC
Confidence 377899999999999999887654443
No 22
>PF08793 2C_adapt: 2-cysteine adaptor domain; InterPro: IPR014901 The virus-specific 2-cysteine adaptor is found fused to OTU/A20-like peptidases and S/T protein kinases. The associations to these proteins indicate that they might function as viral adaptors connecting the kinases and OTU/A20 peptidases to specific targets [].
Probab=40.94 E-value=15 Score=20.42 Aligned_cols=10 Identities=30% Similarity=0.524 Sum_probs=7.5
Q ss_pred CCCCCCCCCC
Q psy7349 2 RNPFSGTSKP 11 (78)
Q Consensus 2 ~~~~~~~~~~ 11 (78)
+||++||.--
T Consensus 12 ~NP~Tgr~Ik 21 (37)
T PF08793_consen 12 VNPITGRKIK 21 (37)
T ss_pred CCCCCCCcCC
Confidence 6899998643
No 23
>KOG4695|consensus
Probab=40.03 E-value=68 Score=22.48 Aligned_cols=41 Identities=15% Similarity=0.347 Sum_probs=33.0
Q ss_pred cchHHhHHHHHHHHHHHHHHHhhcccCCCCCCCCCHHHHHHHHHHHHHh
Q psy7349 28 SVSKECTQLKHQYDECFQTWFTEKFLKGDTDDSMCSPLLKVYQSCVQNC 76 (78)
Q Consensus 28 S~~~eCt~lK~~YD~CFn~WfsEkFLkG~~~~~~C~~lf~~Yq~Cv~ka 76 (78)
-....|+..-..-=+|...| +..++.|..+...|+.|+.+.
T Consensus 43 gs~~tC~qEm~vlfaClK~n--------EF~d~~C~Kei~~f~dC~~~y 83 (122)
T KOG4695|consen 43 GSEATCIQEMSVLFACLKQN--------EFRDDACRKEIQGFLDCAARY 83 (122)
T ss_pred ccchHHHHHHHHHHHHHHhc--------cccchHHHHHHHHHHHHHHHH
Confidence 33578998888888888777 356789999999999999873
No 24
>PF10189 DUF2356: Conserved protein (DUF2356); InterPro: IPR019333 The Integrator complex is involved in small nuclear RNA (snRNA) U1 and U2 transcription, and in their 3'-box-dependent processing. This complex associates with the C-terminal domain of RNA polymerase II largest subunit and is recruited to the U1 and U2 snRNAs genes []. This entry represents subunit 3 of this complex. The function of this subunit is unknown.
Probab=31.51 E-value=30 Score=26.37 Aligned_cols=19 Identities=26% Similarity=0.779 Sum_probs=14.8
Q ss_pred HHHHHHHHhhcccCCCCCC
Q psy7349 41 DECFQTWFTEKFLKGDTDD 59 (78)
Q Consensus 41 D~CFn~WfsEkFLkG~~~~ 59 (78)
..=+..||+.|||.|..++
T Consensus 57 ~kryq~WF~~kyL~~pese 75 (230)
T PF10189_consen 57 QKRYQDWFAKKYLSTPESE 75 (230)
T ss_pred hhHHHHHHHHHhcCCCCcc
Confidence 3356789999999887654
No 25
>KOG4149|consensus
Probab=31.07 E-value=91 Score=22.07 Aligned_cols=41 Identities=20% Similarity=0.455 Sum_probs=28.8
Q ss_pred chHHhHHHHHHHHHHHHHHHhhcccCCCCCCCCCHHHHHHHHHHHHH
Q psy7349 29 VSKECTQLKHQYDECFQTWFTEKFLKGDTDDSMCSPLLKVYQSCVQN 75 (78)
Q Consensus 29 ~~~eCt~lK~~YD~CFn~WfsEkFLkG~~~~~~C~~lf~~Yq~Cv~k 75 (78)
++-.|-..=+.==.||+ +-++.--.-.|.+.|...|.|+|+
T Consensus 66 ~a~pCG~eFreA~sCf~------~s~~e~kg~dC~~qf~a~~~C~qk 106 (129)
T KOG4149|consen 66 VAGPCGEEFREAFSCFK------YSDTEPKGGDCVKQFVAMQECMQK 106 (129)
T ss_pred ccCccHHHHHHHHhhcc------ccCCCcCccchHHHHHHHHHHHHh
Confidence 45677766555557875 234544455799999999999994
No 26
>KOG4110|consensus
Probab=31.01 E-value=48 Score=23.18 Aligned_cols=39 Identities=18% Similarity=0.578 Sum_probs=30.9
Q ss_pred hHHhHHHHHHHHHHHHHHHhhcccCCCCCCCCCHHHHHHHHHHHH
Q psy7349 30 SKECTQLKHQYDECFQTWFTEKFLKGDTDDSMCSPLLKVYQSCVQ 74 (78)
Q Consensus 30 ~~eCt~lK~~YD~CFn~WfsEkFLkG~~~~~~C~~lf~~Yq~Cv~ 74 (78)
+-.|-....++-.||... .+...+.+|..++..+|+||.
T Consensus 33 ~r~cg~FE~e~~eC~eay------G~~~g~keC~ie~~dFqECv~ 71 (120)
T KOG4110|consen 33 GRDCGKFEKEWMECAEAY------GLERGEKECAIEYDDFQECVL 71 (120)
T ss_pred cccccHHHHHHHHHHHHH------hhHhhhHHHHHHHHHHHHHHH
Confidence 345888888888998653 245567799999999999994
No 27
>PF01579 DUF19: Domain of unknown function (DUF19); InterPro: IPR002542 This presumed domain has no known function. It is found in one or two copies in several Caenorhabditis elegans proteins. The domain is roughly 130 amino acids long and contains 12 conserved cysteines, which suggests that it is an extracellular domain and that these cysteines form six intra-domain disulphide bridges.
Probab=30.39 E-value=77 Score=20.29 Aligned_cols=16 Identities=13% Similarity=0.353 Sum_probs=10.4
Q ss_pred CCHHHHHHHHHHHHHhh
Q psy7349 61 MCSPLLKVYQSCVQNCL 77 (78)
Q Consensus 61 ~C~~lf~~Yq~Cv~kaL 77 (78)
.| ..|..++.|+++.|
T Consensus 114 ~C-~~~~~~~~C~~~~i 129 (160)
T PF01579_consen 114 SC-ENFFGEKNCMKKEI 129 (160)
T ss_pred cc-hhhcchhhHHHHHH
Confidence 45 34566778887765
No 28
>KOG4763|consensus
Probab=30.05 E-value=1.5e+02 Score=19.32 Aligned_cols=49 Identities=18% Similarity=0.461 Sum_probs=31.5
Q ss_pred ccccccccchHHhHHH------HHHHHHHHHHHHhhcccCCC-CCCCCCHHHHHHHHHHHHH
Q psy7349 21 VFGDKMNSVSKECTQL------KHQYDECFQTWFTEKFLKGD-TDDSMCSPLLKVYQSCVQN 75 (78)
Q Consensus 21 ~~~~~M~S~~~eCt~l------K~~YD~CFn~WfsEkFLkG~-~~~~~C~~lf~~Yq~Cv~k 75 (78)
.+.|-..-+.+.|..+ -..|+.|-.+ +.++ +....|..++-.|-.|+..
T Consensus 11 ~vvDplt~~rE~C~~~~kcvK~~~~l~~C~~r------v~s~s~tee~Ct~e~fDy~h~~Dh 66 (77)
T KOG4763|consen 11 LVVDPLTYVRESCKQLPKCVKPLLELQACVKR------VQSRSSTEEHCTGEYFDYWHCLDH 66 (77)
T ss_pred hhccHHHHHHHHHHhhHHHhhHHHHHHHHHHH------hccccccchhhHHHHHHHHHHHHH
Confidence 3445555666667643 2367777544 3344 4456799999999998865
No 29
>KOG3477|consensus
Probab=29.21 E-value=71 Score=21.58 Aligned_cols=54 Identities=22% Similarity=0.340 Sum_probs=35.1
Q ss_pred CCCCCCCcccccccccchHHhHHHHHHHHHHHHHHHhhcccCCCCCCCCCHHHHHHHHHHHH
Q psy7349 13 DETTSTKPVFGDKMNSVSKECTQLKHQYDECFQTWFTEKFLKGDTDDSMCSPLLKVYQSCVQ 74 (78)
Q Consensus 13 ~~~~s~~~~~~~~M~S~~~eCt~lK~~YD~CFn~WfsEkFLkG~~~~~~C~~lf~~Yq~Cv~ 74 (78)
+.++.+||.-|.-==--.-+|+..++.|=.|...= .+. ..+|.-+=+.|-+|-.
T Consensus 10 r~lrp~pPekGsFPLDH~geC~~em~eYl~Cl~~k-------~e~-~~eCR~laK~YlqCRM 63 (97)
T KOG3477|consen 10 RGLRPIPPEKGSFPLDHLGECTAEMKEYLGCLKSK-------AEN-SEECRLLAKKYLQCRM 63 (97)
T ss_pred ccccCCCcccCCcCCCcccccHHHHHHHHHHHHHH-------HHh-HHHHHHHHHHHHHHhh
Confidence 44555566544111112368999999999998642 222 3469999999999954
No 30
>PF07165 DUF1397: Protein of unknown function (DUF1397); InterPro: IPR009832 This entry consists of several insect specific 27 kDa Haemolymph glycoprotein precursors. The function of this family is unknown [].
Probab=27.92 E-value=1.3e+02 Score=22.01 Aligned_cols=50 Identities=26% Similarity=0.448 Sum_probs=34.5
Q ss_pred ccchHHhHH-HHHHHHHHHHHHHhhcccCC---C------CCCCCCHHHHHHHHHHHHHhhC
Q psy7349 27 NSVSKECTQ-LKHQYDECFQTWFTEKFLKG---D------TDDSMCSPLLKVYQSCVQNCLI 78 (78)
Q Consensus 27 ~S~~~eCt~-lK~~YD~CFn~WfsEkFLkG---~------~~~~~C~~lf~~Yq~Cv~kaLk 78 (78)
+.-+++|-+ ++....+|||.-|+ .|-.. + .....|.+ +...|.||.+.|.
T Consensus 130 ~~~g~eC~~~~~~~i~~C~~~~~~-~~~~~~~s~~~~~p~~~~~qC~~-l~~~~~Cvv~~Le 189 (213)
T PF07165_consen 130 AEGGPECFESLKDNIQQCANKTFS-GYSDMNISKLMSIPKFGEKQCSD-LDNLRSCVVEKLE 189 (213)
T ss_pred ccCcHHHHHHhhHHHHHHHHHHHh-hccccccccccccCcCChHhhhh-HHHHHHHHHHHhc
Confidence 345799975 45667999999997 33211 1 24457876 5789999998873
No 31
>PF10203 Pet191_N: Cytochrome c oxidase assembly protein PET191; InterPro: IPR018793 This entry represents a family of conserved proteins found from nematodes to humans. Cytochrome c oxidase assembly protein Pet191 carries six highly conserved cysteine residues. Pet191 is required for the assembly of active cytochrome c oxidase but does not form part of the final assembled complex [].
Probab=26.16 E-value=39 Score=20.97 Aligned_cols=24 Identities=29% Similarity=0.670 Sum_probs=15.1
Q ss_pred cccccccchHHhHHHHHHHHHHHH
Q psy7349 22 FGDKMNSVSKECTQLKHQYDECFQ 45 (78)
Q Consensus 22 ~~~~M~S~~~eCt~lK~~YD~CFn 45 (78)
+.+....+.++|..|+..|=+|=.
T Consensus 33 l~~~~~~~p~eC~~lr~~f~eCKr 56 (68)
T PF10203_consen 33 LKDPSDELPEECQQLRKAFFECKR 56 (68)
T ss_pred HcCCCCcCCHHHHHHHHHHHHHhc
Confidence 334445666777777777777643
No 32
>KOG4083|consensus
Probab=25.31 E-value=90 Score=23.44 Aligned_cols=41 Identities=29% Similarity=0.653 Sum_probs=31.1
Q ss_pred chHHhHHHHHHHHHHHHHHHhhcccCCCCCCCCCHHHHHHHHHHHHHhh
Q psy7349 29 VSKECTQLKHQYDECFQTWFTEKFLKGDTDDSMCSPLLKVYQSCVQNCL 77 (78)
Q Consensus 29 ~~~eCt~lK~~YD~CFn~WfsEkFLkG~~~~~~C~~lf~~Yq~Cv~kaL 77 (78)
..|-|-+++.+.=.|+- ++ .|.. ..|.++-.+|++||..+.
T Consensus 144 ~~pvCqdlq~qil~Cyr----~~--p~e~--LkC~~lv~af~~Cv~~~r 184 (192)
T KOG4083|consen 144 REPVCQDLQAQILRCYR----EN--PGEV--LKCSPLVAAFMKCVSLAR 184 (192)
T ss_pred cCCcccccHHHHHHHHh----cC--CCcc--ccccHHHHHHHHHHHHHH
Confidence 45788899988888854 33 3444 359999999999998764
No 33
>PF06856 DUF1251: Protein of unknown function (DUF1251); InterPro: IPR009661 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf17; it is a family of uncharacterised viral proteins.
Probab=25.15 E-value=59 Score=22.52 Aligned_cols=28 Identities=29% Similarity=0.478 Sum_probs=24.5
Q ss_pred CCCCCCCCCCCCCCCcccccccccchHHh
Q psy7349 5 FSGTSKPEDETTSTKPVFGDKMNSVSKEC 33 (78)
Q Consensus 5 ~~~~~~~~~~~~s~~~~~~~~M~S~~~eC 33 (78)
|.|=.++.||..+-|-|++ .|+|+-+..
T Consensus 61 FDGF~d~~DE~~T~PFvv~-~L~~l~~~~ 88 (120)
T PF06856_consen 61 FDGFPDEDDEGKTVPFVVG-PLNSLRENH 88 (120)
T ss_pred ECCCCCccccccccccEee-hhhhhhhhh
Confidence 7899999999999999887 888887766
No 34
>PF07527 Hairy_orange: Hairy Orange; InterPro: IPR003650 This domain confers specificity among members of the Hairy/E(SPL) family. HES-2 (hairy and enhancer of split 2) is a transcription factor, and the hairy protein is a pair-rule protein that regulates embryonic segmentation and adult bristle patterning. These proteins are transcriptional repressors of genes that require the BHLH protein for their transcription.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DB7_A.
Probab=23.38 E-value=57 Score=17.89 Aligned_cols=12 Identities=17% Similarity=0.421 Sum_probs=8.7
Q ss_pred HHHHHHHHHHhh
Q psy7349 66 LKVYQSCVQNCL 77 (78)
Q Consensus 66 f~~Yq~Cv~kaL 77 (78)
..=|++|++++.
T Consensus 4 ~~Gy~~C~~Ev~ 15 (43)
T PF07527_consen 4 RAGYSECLNEVS 15 (43)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 345889998864
No 35
>KOG3584|consensus
Probab=23.32 E-value=1.1e+02 Score=24.70 Aligned_cols=18 Identities=28% Similarity=0.811 Sum_probs=13.2
Q ss_pred hHHhHHHHHHHHHHHHHH
Q psy7349 30 SKECTQLKHQYDECFQTW 47 (78)
Q Consensus 30 ~~eCt~lK~~YD~CFn~W 47 (78)
+.||...|++|-.|..+=
T Consensus 303 ARECRRKKKEYVKCLENR 320 (348)
T KOG3584|consen 303 ARECRRKKKEYVKCLENR 320 (348)
T ss_pred HHHHHHhHhHHHHHHHhH
Confidence 567888888888887543
No 36
>PF05946 TcpA: Toxin-coregulated pilus subunit TcpA; InterPro: IPR010271 This family consists of toxin-coregulated pilus subunit (TcpA) proteins from Vibrio cholerae and related sequences. The major virulence factors of toxigenic V. cholerae are cholera toxin (CT), which is encoded by a lysogenic bacteriophage (CTXPhi), and toxin-coregulated pilus (TCP), an essential colonisation factor which is also the receptor for CTXPhi. The genes for the biosynthesis of TCP are part of a larger genetic element known as the TCP pathogenicity island [].; GO: 0009405 pathogenesis, 0009289 pilus, 0043230 extracellular organelle; PDB: 1OQV_A 3S0T_B 3HRV_A.
Probab=20.53 E-value=32 Score=24.21 Aligned_cols=9 Identities=56% Similarity=1.114 Sum_probs=5.5
Q ss_pred CCCCCCCCC
Q psy7349 1 MRNPFSGTS 9 (78)
Q Consensus 1 ~~~~~~~~~ 9 (78)
+||||||.-
T Consensus 14 a~NpfsG~~ 22 (127)
T PF05946_consen 14 AKNPFSGDN 22 (127)
T ss_dssp HB-TTTSSB
T ss_pred hcCCCCCCc
Confidence 378888853
Done!