Query psy7349
Match_columns 78
No_of_seqs 106 out of 147
Neff 4.0
Searched_HMMs 29240
Date Sat Aug 17 00:28:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7349.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7349hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pp9_H Ubiquinol-cytochrome C 94.0 0.18 6.3E-06 31.5 5.9 40 31-75 28-67 (78)
2 3tgu_H Mitochondrial ubiquinol 93.8 0.21 7.2E-06 31.1 5.9 40 31-75 27-66 (77)
3 3cx5_F Cytochrome B-C1 complex 90.7 0.75 2.6E-05 31.9 6.1 46 31-76 88-136 (146)
4 1u96_A Cytochrome C oxidase co 87.1 0.51 1.7E-05 29.2 2.9 37 31-75 24-60 (69)
5 2lqt_A Coiled-coil-helix-coile 79.1 2.9 9.8E-05 26.7 4.1 36 31-74 14-49 (85)
6 2l0y_B HCG2020266, COX17 cytoc 78.1 0.61 2.1E-05 28.8 0.7 35 31-75 28-62 (67)
7 2lql_A Coiled-coil-helix-coile 66.9 3.4 0.00012 26.9 2.3 55 21-76 3-75 (113)
8 2lql_A Coiled-coil-helix-coile 64.3 5.5 0.00019 25.8 2.9 44 26-77 54-97 (113)
9 2p22_D Hypothetical 12.0 kDa p 61.9 2.8 9.6E-05 26.5 1.1 33 22-54 41-79 (79)
10 2k3j_A Mitochondrial intermemb 56.2 24 0.00083 24.3 5.1 39 32-76 67-105 (146)
11 1hp8_A HU-P8; leukemia, cystei 51.6 9.4 0.00032 23.2 2.2 37 31-75 5-41 (68)
12 1ei0_A P8MTCP1; helix-turn-hel 49.9 28 0.00096 18.5 3.9 36 32-75 2-37 (38)
13 3cx5_F Cytochrome B-C1 complex 38.9 16 0.00053 25.2 1.9 16 61-76 89-104 (146)
14 2pa8_L DNA-directed RNA polyme 20.4 25 0.00084 21.7 0.3 26 17-42 64-89 (92)
15 2o35_A Hypothetical protein DU 20.2 40 0.0014 22.1 1.3 11 41-51 45-55 (105)
No 1
>1pp9_H Ubiquinol-cytochrome C reductase complex 11 kDa P; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.28.1.1 PDB: 1bgy_H* 1be3_H* 1l0n_H* 1ntk_H* 1ntm_H* 1ntz_H* 1nu1_H* 1l0l_H* 1ppj_H* 1sqb_H* 1sqp_H* 1sqq_H* 1sqv_H* 1sqx_H* 2a06_H* 2fyu_H* 2ybb_H* 1bcc_H* 2bcc_H* 3bcc_H* ...
Probab=93.99 E-value=0.18 Score=31.45 Aligned_cols=40 Identities=13% Similarity=0.354 Sum_probs=32.3
Q ss_pred HHhHHHHHHHHHHHHHHHhhcccCCCCCCCCCHHHHHHHHHHHHH
Q psy7349 31 KECTQLKHQYDECFQTWFTEKFLKGDTDDSMCSPLLKVYQSCVQN 75 (78)
Q Consensus 31 ~eCt~lK~~YD~CFn~WfsEkFLkG~~~~~~C~~lf~~Yq~Cv~k 75 (78)
+.|..+++.|+.|-.+==+ +++. ...|...|=.|..||..
T Consensus 28 ~~C~~~~~~y~~C~eRV~s----~~~~-~e~C~ee~fd~~hCvD~ 67 (78)
T 1pp9_H 28 EKCVKARERLELCDERVSS----RSQT-EEDCTEELLDFLHARDH 67 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHT----CSSC-SCCSHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhc----CCCC-CCCcHHHHHHHHHHHHH
Confidence 7889999999999988654 2333 44599999999999975
No 2
>3tgu_H Mitochondrial ubiquinol-cytochrome C reductase 11 protein, complex III subunit VIII...; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_H* 3h1i_H* 3h1h_H* 3h1k_H* 3h1l_H* 3h1j_H* 3l71_H* 3l72_H* 3l73_H* 3l74_H* 3l75_H* 3l70_H*
Probab=93.78 E-value=0.21 Score=31.11 Aligned_cols=40 Identities=10% Similarity=0.301 Sum_probs=32.4
Q ss_pred HHhHHHHHHHHHHHHHHHhhcccCCCCCCCCCHHHHHHHHHHHHH
Q psy7349 31 KECTQLKHQYDECFQTWFTEKFLKGDTDDSMCSPLLKVYQSCVQN 75 (78)
Q Consensus 31 ~eCt~lK~~YD~CFn~WfsEkFLkG~~~~~~C~~lf~~Yq~Cv~k 75 (78)
+.|.++++.|+.|-.+==+. .+ ....|..+|=.|..||..
T Consensus 27 ~~C~~~~~~y~~C~eRV~~~----~~-~~e~C~eE~Fd~~hCvD~ 66 (77)
T 3tgu_H 27 EKCVKARERLELCDARVSSR----SH-TEEQCTEELFDFLHARDH 66 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHTC----SS-CCCCSHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhcC----CC-CCCCcHHHHHHHHHHHHH
Confidence 67999999999999886652 23 345699999999999875
No 3
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F* 1p84_F* 2ibz_H* 1kyo_F*
Probab=90.72 E-value=0.75 Score=31.92 Aligned_cols=46 Identities=20% Similarity=0.285 Sum_probs=32.8
Q ss_pred HHhHHHHHHHHHHHHHHHhhcccCC---CCCCCCCHHHHHHHHHHHHHh
Q psy7349 31 KECTQLKHQYDECFQTWFTEKFLKG---DTDDSMCSPLLKVYQSCVQNC 76 (78)
Q Consensus 31 ~eCt~lK~~YD~CFn~WfsEkFLkG---~~~~~~C~~lf~~Yq~Cv~ka 76 (78)
+.|.++++.|+.|-.+==+..=-.| ......|...|=.|..||..-
T Consensus 88 ~~C~~~~~~ydeCveRV~s~~e~~G~~~~~~~EdC~eE~Fdl~hCvD~C 136 (146)
T 3cx5_F 88 EEGKALVHHYEECAERVKIQQQQPGYADLEHKEDCVEEFFHLQHYLDTA 136 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTGGGCCSCCCCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHccccccccccCCCCcccHHHHHHHHhhHhhc
Confidence 6788999999999988743110012 112445999999999999753
No 4
>1u96_A Cytochrome C oxidase copper chaperone; metallochaperone, unstructured N-terminus, two alpha- helices; NMR {Saccharomyces cerevisiae} SCOP: a.17.1.2 PDB: 1u97_A 1z2g_A
Probab=87.13 E-value=0.51 Score=29.24 Aligned_cols=37 Identities=22% Similarity=0.637 Sum_probs=30.1
Q ss_pred HHhHHHHHHHHHHHHHHHhhcccCCCCCCCCCHHHHHHHHHHHHH
Q psy7349 31 KECTQLKHQYDECFQTWFTEKFLKGDTDDSMCSPLLKVYQSCVQN 75 (78)
Q Consensus 31 ~eCt~lK~~YD~CFn~WfsEkFLkG~~~~~~C~~lf~~Yq~Cv~k 75 (78)
=.|-+-|+.=|.|+-. .|..+. .|.++-++|++|+..
T Consensus 24 CaCpetK~aRDeCil~-------~gee~~-~C~~lIeahk~CMr~ 60 (69)
T 1u96_A 24 CVCKPEKEERDTCILF-------NGQDSE-KCKEFIEKYKECMKG 60 (69)
T ss_dssp TTSSHHHHHHHHHHHH-------SCSCSG-GGHHHHHHHHHHHHT
T ss_pred eeCcchhhHHHHHHHh-------cCCcHH-HHHHHHHHHHHHHHH
Confidence 3689999999999852 366554 699999999999864
No 5
>2lqt_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 7; CHCH domain, mitochondrial import, alpha-hairpin, MIA40-DEPE disulfide relay system; NMR {Homo sapiens}
Probab=79.12 E-value=2.9 Score=26.68 Aligned_cols=36 Identities=19% Similarity=0.533 Sum_probs=28.8
Q ss_pred HHhHHHHHHHHHHHHHHHhhcccCCCCCCCCCHHHHHHHHHHHH
Q psy7349 31 KECTQLKHQYDECFQTWFTEKFLKGDTDDSMCSPLLKVYQSCVQ 74 (78)
Q Consensus 31 ~eCt~lK~~YD~CFn~WfsEkFLkG~~~~~~C~~lf~~Yq~Cv~ 74 (78)
..|-+.-+.--.|.++ -+.+.+.|...|+.|+.|-+
T Consensus 14 nPC~~e~~~S~kCL~~--------n~yDr~~C~~yF~~Yk~CKk 49 (85)
T 2lqt_A 14 NPCLSESDASTRCLDE--------NNYDRERCSTYFLRYKNCRR 49 (85)
T ss_dssp CCCHHHHHHHHHHHHH--------TTTCTTTTHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHH--------cCccHHHHHHHHHHHHHHHH
Confidence 5688888888888765 44567889999999999964
No 6
>2l0y_B HCG2020266, COX17 cytochrome C oxidase assembly homolog (S. C pseudogene (COX17); oxidative protein folding, macromolecular complex; NMR {Homo sapiens} PDB: 2lgq_A 2rn9_A 2rnb_A
Probab=78.06 E-value=0.61 Score=28.77 Aligned_cols=35 Identities=23% Similarity=0.561 Sum_probs=14.2
Q ss_pred HHhHHHHHHHHHHHHHHHhhcccCCCCCCCCCHHHHHHHHHHHHH
Q psy7349 31 KECTQLKHQYDECFQTWFTEKFLKGDTDDSMCSPLLKVYQSCVQN 75 (78)
Q Consensus 31 ~eCt~lK~~YD~CFn~WfsEkFLkG~~~~~~C~~lf~~Yq~Cv~k 75 (78)
=.|-+-|+.=|.|+-. .|+ +.|.++-++|++|+..
T Consensus 28 CaCpetK~aRDeCil~-------~ge---e~C~~lIeahk~Cmr~ 62 (67)
T 2l0y_B 28 CTCPETKKARDACIIE-------KGE---EHCGHLIEAHKESMRA 62 (67)
T ss_dssp -----------------------------CCSCSSHHHHHHHHHH
T ss_pred eeCcchhhHhHHHHHh-------cCH---HHHHHHHHHHHHHHHH
Confidence 3689999999999873 243 3799999999999975
No 7
>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}
Probab=66.94 E-value=3.4 Score=26.87 Aligned_cols=55 Identities=13% Similarity=0.414 Sum_probs=31.5
Q ss_pred ccccccccchHHhHHHHHHHHHHH----HHHHhhcccC-CC----------C---CCCCCHHHHHHHHHHHHHh
Q psy7349 21 VFGDKMNSVSKECTQLKHQYDECF----QTWFTEKFLK-GD----------T---DDSMCSPLLKVYQSCVQNC 76 (78)
Q Consensus 21 ~~~~~M~S~~~eCt~lK~~YD~CF----n~WfsEkFLk-G~----------~---~~~~C~~lf~~Yq~Cv~ka 76 (78)
++.-.|.-++..|.+.=..|-+|- +.|-. +=|+ |. . ....|.++|++|.+||.+.
T Consensus 3 ~l~aa~~~vak~C~~~~~~f~~C~~~~~~~dp~-~Cl~eg~~vt~Ca~~~p~~~~I~~~C~~ef~~y~~CL~~n 75 (113)
T 2lql_A 3 HMQAALEVTARYCGRELEQYGQCVAAKPESWQR-DCHYLKMSIAQCTSSHPIIRQIRQACAQPFEAFEECLRQN 75 (113)
T ss_dssp -----------CCHHHHHHHHHHHHHCTTHHHH-TCSHHHHHHHHHHHTCCCCHHHHHHTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHhhcCCCCHH-HHHHHHHHHHHHHhccHHHHHHHHHhHHHHHHHHHHHHHc
Confidence 344456677778999999999996 35764 3332 21 1 2357999999999999864
No 8
>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}
Probab=64.25 E-value=5.5 Score=25.84 Aligned_cols=44 Identities=14% Similarity=0.544 Sum_probs=33.5
Q ss_pred cccchHHhHHHHHHHHHHHHHHHhhcccCCCCCCCCCHHHHHHHHHHHHHhh
Q psy7349 26 MNSVSKECTQLKHQYDECFQTWFTEKFLKGDTDDSMCSPLLKVYQSCVQNCL 77 (78)
Q Consensus 26 M~S~~~eCt~lK~~YD~CFn~WfsEkFLkG~~~~~~C~~lf~~Yq~Cv~kaL 77 (78)
+..|-..|.+.=++|++|... ...+...|.+.-..+..|+.+.+
T Consensus 54 ~~~I~~~C~~ef~~y~~CL~~--------n~~~~~~Cr~~~~~f~~Cae~v~ 97 (113)
T 2lql_A 54 IRQIRQACAQPFEAFEECLRQ--------NEAAVGNCAEHMRRFLQCAEQVQ 97 (113)
T ss_dssp CHHHHHHTHHHHHHHHHHHHH--------CTTCTTTCCSHHHHHHHHHTTC-
T ss_pred HHHHHHHhHHHHHHHHHHHHH--------ccccHHHHHHHHHHHHHHHHHhc
Confidence 445568999999999999865 12223469999999999997654
No 9
>2p22_D Hypothetical 12.0 kDa protein in ADE3-Ser2 intergenic region; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae}
Probab=61.86 E-value=2.8 Score=26.48 Aligned_cols=33 Identities=21% Similarity=0.562 Sum_probs=24.6
Q ss_pred cccccccchHHhHHHHHH------HHHHHHHHHhhcccC
Q psy7349 22 FGDKMNSVSKECTQLKHQ------YDECFQTWFTEKFLK 54 (78)
Q Consensus 22 ~~~~M~S~~~eCt~lK~~------YD~CFn~WfsEkFLk 54 (78)
.+++..-..+||.++-+. --.=|..||.|+||.
T Consensus 41 a~~~~~pWy~EC~~I~~~~~~hd~~~~~Fd~WY~e~yLs 79 (79)
T 2p22_D 41 TRDLLCPWYEECDNITKVCQLHDSSNKKFDQWYKEQYLS 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcC
Confidence 456677888999887543 334699999999983
No 10
>2k3j_A Mitochondrial intermembrane space import and assembly protein 40; alpha-hairpin fold, coiled coil-helix-coiled coil-helix domain; NMR {Homo sapiens} PDB: 2l0y_A
Probab=56.25 E-value=24 Score=24.34 Aligned_cols=39 Identities=23% Similarity=0.568 Sum_probs=30.7
Q ss_pred HhHHHHHHHHHHHHHHHhhcccCCCCCCCCCHHHHHHHHHHHHHh
Q psy7349 32 ECTQLKHQYDECFQTWFTEKFLKGDTDDSMCSPLLKVYQSCVQNC 76 (78)
Q Consensus 32 eCt~lK~~YD~CFn~WfsEkFLkG~~~~~~C~~lf~~Yq~Cv~ka 76 (78)
.|-+.=+.-=.||. |++..+||. .|.+.|...|.|+++.
T Consensus 67 PCG~eFreAfsCF~--~S~~e~Kg~----dC~e~F~~mq~Cm~~~ 105 (146)
T 2k3j_A 67 PCGEQFKSAFSCFH--YSTEEIKGS----DCVDQFRAMQECMQKY 105 (146)
T ss_dssp STHHHHHHHHHHHH--HHCCSSTTT----TTHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHhhc--cCccccccc----hHHHHHHHHHHHHHHC
Confidence 67665555558997 888888864 5999999999999863
No 11
>1hp8_A HU-P8; leukemia, cysteine motif; NMR {Homo sapiens} SCOP: a.17.1.1 PDB: 2hp8_A
Probab=51.58 E-value=9.4 Score=23.21 Aligned_cols=37 Identities=16% Similarity=0.495 Sum_probs=28.4
Q ss_pred HHhHHHHHHHHHHHHHHHhhcccCCCCCCCCCHHHHHHHHHHHHH
Q psy7349 31 KECTQLKHQYDECFQTWFTEKFLKGDTDDSMCSPLLKVYQSCVQN 75 (78)
Q Consensus 31 ~eCt~lK~~YD~CFn~WfsEkFLkG~~~~~~C~~lf~~Yq~Cv~k 75 (78)
..|...-.+...|.++= .++...|..+++.|++|=++
T Consensus 5 dPC~~~AcaiQ~CL~~N--------~yd~skCq~~id~L~eCc~~ 41 (68)
T 1hp8_A 5 DPCQKQACEIQKCLQAN--------SYMESKCQAVIQELRKCCAQ 41 (68)
T ss_dssp CTTHHHHHHHHHHHHHT--------TTCHHHHHHHHHHHHHHHTT
T ss_pred CchHHHHHHHHHHHHHc--------CCcHHHHHHHHHHHHHHHHH
Confidence 67888888888888752 24456799999999998653
No 12
>1ei0_A P8MTCP1; helix-turn-helix, disulfide bridges, cell cycle; NMR {Synthetic} SCOP: j.77.1.1
Probab=49.89 E-value=28 Score=18.50 Aligned_cols=36 Identities=17% Similarity=0.538 Sum_probs=25.7
Q ss_pred HhHHHHHHHHHHHHHHHhhcccCCCCCCCCCHHHHHHHHHHHHH
Q psy7349 32 ECTQLKHQYDECFQTWFTEKFLKGDTDDSMCSPLLKVYQSCVQN 75 (78)
Q Consensus 32 eCt~lK~~YD~CFn~WfsEkFLkG~~~~~~C~~lf~~Yq~Cv~k 75 (78)
.|...-.+...|.++ -..+.+.|...++.|++|=++
T Consensus 2 pC~~~a~a~q~CL~~--------n~~d~skCq~~id~l~~Cc~~ 37 (38)
T 1ei0_A 2 PCQKQAAEIQKCLQA--------NSYLESKCQAVIQELKKCAAQ 37 (38)
T ss_dssp CSHHHHHHHHHHHHH--------TTTCGGGTHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHHhc
Confidence 466666677777764 124567899999999999654
No 13
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F* 1p84_F* 2ibz_H* 1kyo_F*
Probab=38.94 E-value=16 Score=25.24 Aligned_cols=16 Identities=19% Similarity=0.503 Sum_probs=14.2
Q ss_pred CCHHHHHHHHHHHHHh
Q psy7349 61 MCSPLLKVYQSCVQNC 76 (78)
Q Consensus 61 ~C~~lf~~Yq~Cv~ka 76 (78)
.|.++++.|+.||.+.
T Consensus 89 ~C~~~~~~ydeCveRV 104 (146)
T 3cx5_F 89 EGKALVHHYEECAERV 104 (146)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4999999999999874
No 14
>2pa8_L DNA-directed RNA polymerase subunit L; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_L 3hkz_L 2waq_L 2wb1_L 2y0s_L
Probab=20.36 E-value=25 Score=21.73 Aligned_cols=26 Identities=4% Similarity=0.095 Sum_probs=20.8
Q ss_pred CCCcccccccccchHHhHHHHHHHHH
Q psy7349 17 STKPVFGDKMNSVSKECTQLKHQYDE 42 (78)
Q Consensus 17 s~~~~~~~~M~S~~~eCt~lK~~YD~ 42 (78)
++..++-+....+...|.+++++|+.
T Consensus 64 ~p~~al~~a~~~l~~~~~~~~~~f~~ 89 (92)
T 2pa8_L 64 TPKDALLKAIENIRGMTSHYIDEIKG 89 (92)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888888888999999998876
No 15
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=20.17 E-value=40 Score=22.13 Aligned_cols=11 Identities=27% Similarity=1.123 Sum_probs=9.0
Q ss_pred HHHHHHHHhhc
Q psy7349 41 DECFQTWFTEK 51 (78)
Q Consensus 41 D~CFn~WfsEk 51 (78)
.+|+.+||.+-
T Consensus 45 RNCLskWy~~a 55 (105)
T 2o35_A 45 RNCLSNWYREA 55 (105)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 47999999863
Done!