RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7349
(78 letters)
>gnl|CDD|147448 pfam05254, UPF0203, Uncharacterized protein family (UPF0203).
This family of proteins is functionally
uncharacterized.
Length = 68
Score = 70.8 bits (174), Expect = 3e-18
Identities = 26/50 (52%), Positives = 38/50 (76%)
Query: 28 SVSKECTQLKHQYDECFQTWFTEKFLKGDTDDSMCSPLLKVYQSCVQNCL 77
S + ECT+LK +YD+CF W++EKFLKGD+ ++ C+ L + YQ+CVQ L
Sbjct: 4 SFAPECTELKEKYDKCFNKWYSEKFLKGDSTENECTELFEKYQTCVQKAL 53
>gnl|CDD|178628 PLN03079, PLN03079, Uncharacterized protein At4g33100;
Provisional.
Length = 91
Score = 41.5 bits (97), Expect = 2e-06
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 28 SVSKECTQLKHQYDECFQTWFTEKFLKGDTDDSMCSPLLKVYQSCVQNCL 77
S + C +L+ Y CF W++EKF+KG D C Y++C+ L
Sbjct: 13 SSTSPCAELRTAYHNCFNRWYSEKFVKGQWDKEDCVAEWHKYRACLSEHL 62
>gnl|CDD|236506 PRK09420, cpdB, bifunctional 2',3'-cyclic nucleotide
2'-phosphodiesterase/3'-nucleotidase periplasmic
precursor protein; Reviewed.
Length = 649
Score = 27.6 bits (62), Expect = 0.49
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 45 QTWFTEKFLKGDTD 58
Q + E F++GD D
Sbjct: 385 QKAYVEHFIQGDPD 398
>gnl|CDD|182754 PRK10815, PRK10815, sensor protein PhoQ; Provisional.
Length = 485
Score = 26.1 bits (58), Expect = 1.9
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 59 DSMCSPLLKVYQ 70
D++ S L KVYQ
Sbjct: 345 DNLTSALNKVYQ 356
>gnl|CDD|115427 pfam06769, Plasmid_Txe, Plasmid encoded toxin Txe. The plasmid
encoded Axe-Txe proteins in Enterococcus faecium act as
an antitoxin-toxin pair. When the plasmid is lost, the
antitoxin (Axe) is degraded relatively quickly by host
enzymes. This allows the toxin to interact with its
intracellular target, thus killing the cell or impeding
cell growth. This family contains many hypothetical
proteins. This domain forms complexes with Axe
antitoxins containing pfam02604.
Length = 80
Score = 25.0 bits (55), Expect = 2.5
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 2 RNPFSGTSKPE 12
R+PF G KPE
Sbjct: 32 RDPFEGIGKPE 42
>gnl|CDD|188648 cd09816, prostaglandin_endoperoxide_synthase, Animal prostaglandin
endoperoxide synthase and related bacterial proteins.
Animal prostaglandin endoperoxide synthases, including
prostaglandin H2 synthase and a set of similar bacterial
proteins which may function as cyclooxygenases.
Prostaglandin H2 synthase catalyzes the synthesis of
prostaglandin H2 from arachidonic acid. In two reaction
steps, arachidonic acid is converted to Prostaglandin
G2, a peroxide (cyclooxygenase activity) and
subsequently converted to the end product via the
enzyme's peroxidase activity. Prostaglandin H2 synthase
is the target of aspirin and other non-steroid
anti-inflammatory drugs such as ibuprofen, which block
the substrate's access to the active site and may
acetylate a conserved serine residue. In humans and
other mammals, prostaglandin H2 synthase (PGHS), also
called cyclooxygenase (COX) is present as at least two
isozymes, PGHS-1 (or COX-1) and PGHS-2 (or COX-2),
respectively. PGHS-1 is expressed constitutively in most
mammalian cells, while the expression of PGHS-2 is
induced via inflammation response in endothelial cells,
activated macrophages, and others. COX-3 is a splice
variant of COX-1.
Length = 490
Score = 25.3 bits (56), Expect = 3.6
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 44 FQTWFTEKFLKGDTDDS 60
F WFT++FL+ D D
Sbjct: 106 FAQWFTDQFLRTDPGDP 122
>gnl|CDD|180045 PRK05377, PRK05377, fructose-1,6-bisphosphate aldolase; Reviewed.
Length = 296
Score = 25.2 bits (56), Expect = 3.8
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 19 KPVFGDKMNSVSKE 32
K +FG KM SV KE
Sbjct: 134 KGIFGTKMRSVIKE 147
>gnl|CDD|131171 TIGR02116, toxin_Txe_YoeB, toxin-antitoxin system, toxin
component, Txe/YoeB family. The Axe-Txe pair in
Enterococcus faecium and the homologous YefM-YoeB pair
in Escherichia coli have been shown to act as an
antitoxin-toxin pair. This model describes the toxin
component. Nearly every example found is next to an
identifiable antitoxin, as indicated by match to models
TIGR01552 and/or pfam02604 [Cellular processes, Toxin
production and resistance, Mobile and extrachromosomal
element functions, Other].
Length = 80
Score = 24.6 bits (54), Expect = 4.1
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 1 MRNPFSGTSKPE 12
R+PF G KPE
Sbjct: 31 RRDPFKGKGKPE 42
>gnl|CDD|215443 PLN02829, PLN02829, Probable galacturonosyltransferase.
Length = 639
Score = 24.4 bits (53), Expect = 9.0
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 3 NPFSGTSKPEDETTSTKPVFGDKMNSVSKE 32
P S ED T T K+N + +E
Sbjct: 33 TPSSKRDFLEDVTALTLGGDASKLNVLPQE 62
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.130 0.408
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,506,341
Number of extensions: 229354
Number of successful extensions: 175
Number of sequences better than 10.0: 1
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 13
Length of query: 78
Length of database: 10,937,602
Length adjustment: 47
Effective length of query: 31
Effective length of database: 8,852,964
Effective search space: 274441884
Effective search space used: 274441884
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.3 bits)