RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy7349
         (78 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 33.9 bits (77), Expect = 0.002
 Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 2/39 (5%)

Query: 11   PEDETTSTKPVFGDKMNSVSKECTQLKHQYDECFQTWFT 49
              D    T+ +F + +N  S   T  + +      T FT
Sbjct: 1696 IVDGKLKTEKIFKE-INEHSTSYT-FRSEKGLLSATQFT 1732



 Score = 30.8 bits (69), Expect = 0.026
 Identities = 19/94 (20%), Positives = 32/94 (34%), Gaps = 25/94 (26%)

Query: 1   MRNPFSGT-SKP------EDETTSTKPVFGDKMNSVSKECTQLK-HQYDECFQTW---FT 49
           ++  F+    +P      +DE T+   + G  +  VS      K  Q+D+        F 
Sbjct: 33  LQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFE 92

Query: 50  EKFLKG--------------DTDDSMCSPLLKVY 69
             +L+G              DT       L+K Y
Sbjct: 93  NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY 126


>4ewg_A Beta-ketoacyl synthase; ssgcid, structural genomics, seattle
           structural genomics CEN infectious disease, transferase;
           2.25A {Burkholderia phymatum}
          Length = 412

 Score = 27.8 bits (63), Expect = 0.25
 Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 4/27 (14%)

Query: 7   GTSKP---EDETTSTKPVFGDKMNSVS 30
           GTS       E+ +T   FG++M  +S
Sbjct: 306 GTSTDRGDVAESQATARTFGERMP-IS 331


>1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A
           {Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB:
           1oxh_A 2alm_A 2rjt_A
          Length = 430

 Score = 27.5 bits (62), Expect = 0.42
 Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 4/27 (14%)

Query: 7   GTSKP---EDETTSTKPVFGDKMNSVS 30
           GTS P   + E+ +   V G ++  VS
Sbjct: 323 GTSTPANEKGESGAIVAVLGKEVP-VS 348


>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting
          domain, arm repeats phospho-CTD, phosphoprotein,
          transcription; 1.60A {Homo sapiens} PDB: 3d9k_A*
          3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
          Length = 145

 Score = 26.6 bits (58), Expect = 0.75
 Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 3/62 (4%)

Query: 15 TTSTKPVFGDKMNSVSKECTQLKHQYDECFQTWFTEKFLKGDTDDSMCSPLLKVYQSCVQ 74
               P+   KM  ++K   +    Y    Q+   EKF++         P L V  S V+
Sbjct: 15 NDYKPPISKAKMTQITKAAIKAIKFYKHVVQSV--EKFIQ-KCKPEYKVPGLYVIDSIVR 71

Query: 75 NC 76
            
Sbjct: 72 QS 73


>2vba_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytoplasm, antibiotic,
           transferase, amino-thiazole, acyltransferase, lipid
           synthesis; HET: P4T; 1.36A {Escherichia coli} SCOP:
           c.95.1.1 c.95.1.1 PDB: 1fj4_A* 1g5x_A 2aq7_A* 1fj8_A*
           2aqb_A 2bui_A 2buh_A 2vb7_A* 2vb8_A 2vb9_A* 1h4f_A
           1dd8_A 2cdh_A 2bz4_A 2byz_A 2bz3_A* 2byy_A* 1f91_A*
           2cf2_A 2byw_A ...
          Length = 406

 Score = 26.3 bits (59), Expect = 0.88
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 3/27 (11%)

Query: 7   GTSKP---EDETTSTKPVFGDKMNSVS 30
           GTS P     E  + + VFGDK  ++S
Sbjct: 299 GTSTPVGDVKELAAIREVFGDKSPAIS 325


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.316    0.130    0.408 

Gapped
Lambda     K      H
   0.267   0.0839    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,073,162
Number of extensions: 43785
Number of successful extensions: 69
Number of sequences better than 10.0: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 9
Length of query: 78
Length of database: 6,701,793
Length adjustment: 47
Effective length of query: 31
Effective length of database: 5,389,506
Effective search space: 167074686
Effective search space used: 167074686
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.2 bits)