RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7349
         (78 letters)



>d3cx5f1 f.28.1.1 (F:74-147) Non-heme 11 kDa protein of cytochrome
          bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's
          yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 74

 Score = 23.7 bits (51), Expect = 1.8
 Identities = 8/50 (16%), Positives = 14/50 (28%), Gaps = 3/50 (6%)

Query: 30 SKECTQLKHQYDEC---FQTWFTEKFLKGDTDDSMCSPLLKVYQSCVQNC 76
          ++E   L H Y+EC    +    +           C       Q  +   
Sbjct: 15 TEEGKALVHHYEECAERVKIQQQQPGYADLEHKEDCVEEFFHLQHYLDTA 64


>d1ppjh_ f.28.1.1 (H:) Non-heme 11 kDa protein of cytochrome bc1
          complex (Ubiquinol-cytochrome c reductase) {Cow (Bos
          taurus) [TaxId: 9913]}
          Length = 66

 Score = 22.0 bits (47), Expect = 7.6
 Identities = 2/14 (14%), Positives = 8/14 (57%)

Query: 30 SKECTQLKHQYDEC 43
           ++C + + + + C
Sbjct: 15 LEKCVKARERLELC 28


>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium
           tuberculosis, GroEL2 [TaxId: 1773]}
          Length = 184

 Score = 22.1 bits (47), Expect = 9.2
 Identities = 7/40 (17%), Positives = 17/40 (42%), Gaps = 2/40 (5%)

Query: 12  EDETTSTKPVFGDKMNSVSKECTQLKHQYDECFQTWFTEK 51
           +DETT          ++++    Q++ + +     +  EK
Sbjct: 136 KDETT--IVEGAGDTDAIAGRVAQIRQEIENSDSDYDREK 173


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.130    0.408 

Gapped
Lambda     K      H
   0.267   0.0612    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 278,652
Number of extensions: 10099
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 4
Length of query: 78
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 33
Effective length of database: 1,789,746
Effective search space: 59061618
Effective search space used: 59061618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.1 bits)