BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7350
(315 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UWY|A Chain A, Crystal Structure Of Human Carboxypeptidase M
Length = 426
Score = 271 bits (692), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 144/300 (48%), Positives = 172/300 (57%), Gaps = 53/300 (17%)
Query: 6 RDLWVMVVSASPYEHMIGKPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLL 65
R+LWV+VV P EH IG P+ KYVANMHG+E VGREL+LHLI Y V + DP I L+
Sbjct: 38 RNLWVLVVGRFPKEHRIGIPEFKYVANMHGDETVGRELLLHLIDYLVTSDGKDPEITNLI 97
Query: 66 DNTRIHILPSMNPDGYEVAREGQCEGGQGRYNARGFDLNRNFPDYFKQNNKRGQPETDAV 125
++TRIHI+PSMNPDG+E ++ C GR N +DLNRNFPD F+ NN QPET AV
Sbjct: 98 NSTRIHIMPSMNPDGFEAVKKPDCYYSIGRENYNQYDLNRNFPDAFEYNNVSRQPETVAV 157
Query: 126 KEWTSKIQFVLSGGLHGGALVASYPFDNTPNSSEYLELNNKRGQPETDAVKEWTSKIQFV 185
+W FVLS LHGGALVASYPFDN
Sbjct: 158 MKWLKTETFVLSANLHGGALVASYPFDN-------------------------------- 185
Query: 186 LSGGLHGGALVASYPFDNTPNSMFQSYSSAPSLTPDDDVFKHLALTYSRNHPTMATGLAC 245
G GAL + SLTPDDDVF++LA TY+ +P M G C
Sbjct: 186 --GVQATGALYSR------------------SLTPDDDVFQYLAHTYASRNPNMKKGDEC 225
Query: 246 KSNTPAFKQGITNGAQWYPLTGGMQDFNYVWYGCMEVTLELSCCKFPPASELPKMWEENR 305
K N F G+TNG WYPL GGMQD+NY+W C E+TLELSCCK+P +LP W N+
Sbjct: 226 K-NKMNFPNGVTNGYSWYPLQGGMQDYNYIWAQCFEITLELSCCKYPREEKLPSFWNNNK 284
>pdb|1QMU|A Chain A, Duck Carboxypeptidase D Domain Ii
pdb|1H8L|A Chain A, Duck Carboxypeptidase D Domain Ii In Complex With Gemsa
Length = 380
Score = 241 bits (615), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 133/302 (44%), Positives = 167/302 (55%), Gaps = 57/302 (18%)
Query: 6 RDLWVMVVSASPYEHMIGKPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLL 65
R+L+VM +S +P H G+P+ KY+ NMHGNE VGREL+L+LI+Y N+ TDP + L+
Sbjct: 43 RELYVMEISDNPGIHEAGEPEFKYIGNMHGNEVVGRELLLNLIEYLCKNFGTDPEVTDLV 102
Query: 66 DNTRIHILPSMNPDGYEVAREGQCEGGQGRYNARGFDLNRNFPDYFKQNNKRGQPETDAV 125
+TRIHI+PSMNPDGYE ++EG G GR N+ +DLNRNFPD F Q QPET AV
Sbjct: 103 QSTRIHIMPSMNPDGYEKSQEGDRGGTVGRNNSNNYDLNRNFPDQFFQVTDPPQPETLAV 162
Query: 126 KEWTSKIQFVLSGGLHGGALVASYPFDNTPNSSEYLELNNKRGQPETDAVKEWTSKIQFV 185
W FVLS LHGG+LV +YPFD+
Sbjct: 163 MSWLKTYPFVLSANLHGGSLVVNYPFDDDE------------------------------ 192
Query: 186 LSGGLHGGALVASYPFDNTPNSMFQSYSSAPSLTPDDDVFKHLALTYSRNHPTMATGLAC 245
G A+ + P D VF+ LAL+YS+ + M G C
Sbjct: 193 -----QGIAIYSKSPDDA--------------------VFQQLALSYSKENKKMYQGSPC 227
Query: 246 KSNTPA--FKQGITNGAQWYPLTGGMQDFNYVWYGCMEVTLELSCCKFPPASELPKMWEE 303
K P F GITNGAQWY + GGMQD+NY+ C EVT+EL C K+P A ELPK WE+
Sbjct: 228 KDLYPTEYFPHGITNGAQWYNVPGGMQDWNYLNTNCFEVTIELGCVKYPKAEELPKYWEQ 287
Query: 304 NR 305
NR
Sbjct: 288 NR 289
>pdb|3MN8|A Chain A, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
pdb|3MN8|B Chain B, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
pdb|3MN8|C Chain C, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
pdb|3MN8|D Chain D, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
Length = 435
Score = 228 bits (581), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 124/303 (40%), Positives = 167/303 (55%), Gaps = 53/303 (17%)
Query: 6 RDLWVMVVSASPYEHMIGKPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLL 65
R+L + +S + + P VKY+ANMHG+E VGR+L++++ QY + N+ + L+
Sbjct: 73 RNLLALQISRNTRSRNLLTPPVKYIANMHGDETVGRQLLVYMAQYLLGNHERISDLGQLV 132
Query: 66 DNTRIHILPSMNPDGYEVAREGQCEGG---QGRYNARGFDLNRNFPDYFKQNNKRGQPET 122
++T I+++P+MNPDGY +++EG CE GR NA DLNR+FPD +Q
Sbjct: 133 NSTDIYLVPTMNPDGYALSQEGNCESLPNYVGRGNAANIDLNRDFPDRLEQ--------- 183
Query: 123 DAVKEWTSKIQFVLSGGLHGGALVASYPFDNTPNSSEYLELNNKRGQPETDAVKEWTSKI 182
S +L + QPET A+ W
Sbjct: 184 -----------------------------------SHVHQLRAQSRQPETAALVNWIVSK 208
Query: 183 QFVLSGGLHGGALVASYPFDNTPNSMFQSYSSAPSLTPDDDVFKHLALTYSRNHPTMATG 242
FVLS HGGA+VASYP+DN S+ + SLTPDD VFK LA TYS NHP M G
Sbjct: 209 PFVLSANFHGGAVVASYPYDN---SLAHNECCEESLTPDDRVFKQLAHTYSDNHPIMRKG 265
Query: 243 LACKSNTPAFKQGITNGAQWYPLTGGMQDFNYVWYGCMEVTLELSCCKFPPASELPKMWE 302
C +F GITNGA WY L+GGMQDFNY + C E+T+ELSCCK+P AS LP+ W+
Sbjct: 266 NNCND---SFSGGITNGAHWYELSGGMQDFNYAFSNCFELTIELSCCKYPAASTLPQEWQ 322
Query: 303 ENR 305
N+
Sbjct: 323 RNK 325
>pdb|2NSM|A Chain A, Crystal Structure Of The Human Carboxypeptidase N
(kininase I) Catalytic Domain
Length = 439
Score = 205 bits (521), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 135/323 (41%), Positives = 164/323 (50%), Gaps = 75/323 (23%)
Query: 6 RDLWVMVVSASPYEHMIGKPDVKYVANMHGNEAVGRELMLHLIQYFVDNY-NTDPYIKWL 64
R L+V+ S P H +P+VKYV NMHGNEA+GRELML L ++ + + N + I L
Sbjct: 39 RHLYVLEFSDHPGIHEPLEPEVKYVGNMHGNEALGRELMLQLSEFLCEEFRNRNQRIVQL 98
Query: 65 LDNTRIHILPSMNPDGYEV-AREGQCEGGQ--GRYNARGFDLNRNFPD---YFKQNNKRG 118
+ +TRIHILPSMNPDGYEV A +G + G GR NA G DLNRNFPD Y N K G
Sbjct: 99 IQDTRIHILPSMNPDGYEVAAAQGPNKPGYLVGRNNANGVDLNRNFPDLNTYIYYNEKYG 158
Query: 119 ----------------QPETDAVKEWTSKIQFVLSGGLHGGALVASYPFDNTPNSSEYLE 162
+PET AV W FVLS LHGGA+VA+YP+D
Sbjct: 159 GPNHHLPLPDNWKSQVEPETRAVIRWMHSFNFVLSANLHGGAVVANYPYD---------- 208
Query: 163 LNNKRGQPETDAVKEWTSKIQFVLSGGLHGGALVASYPFDNTPNSMFQSYSSAPSLTPDD 222
K + +++ G AS P TPDD
Sbjct: 209 -------------KSFEHRVR--------GVRRTASTP------------------TPDD 229
Query: 223 DVFKHLALTYSRNHPTMATGLACKSNTPAFKQGITNGAQWYPLTGGMQDFNYVWYGCMEV 282
+F+ LA YS H M G C F GITNGA WY L+ GMQDFNY+ C E+
Sbjct: 230 KLFQKLAKVYSYAHGWMFQGWNCGD---YFPDGITNGASWYSLSKGMQDFNYLHTNCFEI 286
Query: 283 TLELSCCKFPPASELPKMWEENR 305
TLELSC KFPP EL + W N+
Sbjct: 287 TLELSCDKFPPEEELQREWLGNK 309
>pdb|3V38|A Chain A, Carboxypeptidase T Mutant L254n
Length = 326
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 28/119 (23%)
Query: 6 RDLWVMVVSASPYEHMIG----KPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYI 61
R+LW + +S + +G +P+V Y A H E + E+ L+ + F NYN D I
Sbjct: 42 RELWAVKISDN-----VGTDENEPEVLYTALHHAREHLTVEMALYTLDLFTQNYNLDSRI 96
Query: 62 KWLLDNTRIHILPSMNPDGYEVAREGQCEGGQGRYNA-------------RGFDLNRNF 107
L++N I+I+ ++NPDG G+ + G Y + G DLNRN+
Sbjct: 97 TNLVNNREIYIVFNINPDG------GEYDISSGSYKSWRKNRQPNSGSSYVGTDLNRNY 149
>pdb|1OBR|A Chain A, Carboxypeptidase T
pdb|3V7Z|A Chain A, Carboxypeptidase T With Gemsa
pdb|4DUK|A Chain A, Carboxypeptidase T With L-benzylsuccinic Acid
Length = 326
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 28/119 (23%)
Query: 6 RDLWVMVVSASPYEHMIG----KPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYI 61
R+LW + +S + +G +P+V Y A H E + E+ L+ + F NYN D I
Sbjct: 42 RELWAVKISDN-----VGTDENEPEVLYTALHHAREHLTVEMALYTLDLFTQNYNLDSRI 96
Query: 62 KWLLDNTRIHILPSMNPDGYEVAREGQCEGGQGRYNA-------------RGFDLNRNF 107
L++N I+I+ ++NPDG G+ + G Y + G DLNRN+
Sbjct: 97 TNLVNNREIYIVFNINPDG------GEYDISSGSYKSWRKNRQPNSGSSYVGTDLNRNY 149
>pdb|3QNV|A Chain A, Carboxypeptidase T
pdb|4DJL|A Chain A, Carboxypeptidase T With N-sulfamoyl-l-phenylalanine
Length = 323
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 28/119 (23%)
Query: 6 RDLWVMVVSASPYEHMIG----KPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYI 61
R+LW + +S + +G +P+V Y A H E + E+ L+ + F NYN D I
Sbjct: 42 RELWAVKISDN-----VGTDENEPEVLYTALHHAREHLTVEMALYTLDLFTQNYNLDSRI 96
Query: 62 KWLLDNTRIHILPSMNPDGYEVAREGQCEGGQGRYNA-------------RGFDLNRNF 107
L++N I+I+ ++NPDG G+ + G Y + G DLNRN+
Sbjct: 97 TNLVNNREIYIVFNINPDG------GEYDISSGSYKSWRKNRQPNSGSSYVGTDLNRNY 149
>pdb|3PRT|A Chain A, Mutant Of The Carboxypeptidase T
Length = 323
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 74/316 (23%), Positives = 118/316 (37%), Gaps = 98/316 (31%)
Query: 6 RDLWVMVVSASPYEHMIG----KPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYI 61
R+LW + +S + +G +P+V Y A H E + E+ L+ + F NYN D I
Sbjct: 42 RELWAVKISDN-----VGTDENEPEVLYTALHHAREHLTVEMALYTLDLFTQNYNLDSRI 96
Query: 62 KWLLDNTRIHILPSMNPDGYEVAREGQCEGGQGRYNA-------------RGFDLNRNFP 108
L++N I+I+ ++NPDG G+ + G Y + G DLNRN+
Sbjct: 97 TNLVNNREIYIVFNINPDG------GEYDISSGSYKSWRKNRQPNSGSSYVGTDLNRNYG 150
Query: 109 DYFKQNNKRGQPETDAVKEWTSKIQFVLSGGLHGGALVASYPFDNTPNSSEYLELNNKRG 168
+K G + + + + + F
Sbjct: 151 --YKWGCCGGSSGSPSSETYRGRSAF---------------------------------S 175
Query: 169 QPETDAVKEWTS------KIQFVLSGGLHGGALVASYPFDNTPNSMFQSYSSAPS-LTPD 221
PET A++++ + K Q H + + YP+ T Y+ PS +T D
Sbjct: 176 APETAAMRDFINSRVVGGKQQIKTLITFHTYSELILYPYSYT-------YTDVPSDMTQD 228
Query: 222 D-DVFKHLALTYSRNHPTMATGLACKSNTPAFKQGIT--NGAQWYPLTGGMQDFNYVWYG 278
D +VFK +A NT A G T G+ Y GGM D+ Y +
Sbjct: 229 DFNVFKTMA------------------NTMAQTNGYTPQQGSDLYIADGGMDDWAYGQHK 270
Query: 279 CMEVTLELSCCKFPPA 294
T E+ + P
Sbjct: 271 IFAFTFEMYPTSYNPG 286
>pdb|3K2K|A Chain A, Crystal Structure Of Putative Carboxypeptidase
(Yp_103406.1) From Burkholderia Mallei Atcc 23344 At
2.49 A Resolution
Length = 403
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 14/134 (10%)
Query: 11 MVVSASPYEHMIGKPDVKYVANMHGNEAVGRELMLHLIQYFVD--NYNTDPYIKWLLDNT 68
+VV +P E K V +A H E+ + L++ V +++ DP + L D+
Sbjct: 167 LVVLGTPDEAGAAKKKVWIIARQHPGESXAEWFIEGLVKRLVGWGDWSGDPVARKLYDHA 226
Query: 69 RIHILPSMNPDGYEVAREGQCEGGQGRYNARGFDLNRNFPDYFKQNNKRGQPETDAVKEW 128
+I+P+ NPDG G R NA G +LNR + + + PE V++
Sbjct: 227 TFYIVPNXNPDG--------SVHGNLRTNAAGANLNRE----WXEPDAERSPEVLVVRDA 274
Query: 129 TSKIQFVLSGGLHG 142
I L +HG
Sbjct: 275 IHAIGCDLFFDIHG 288
>pdb|1DTD|A Chain A, Crystal Structure Of The Complex Between The Leech
Carboxypeptidase Inhibitor And The Human
Carboxypeptidase A2 (Lci-Cpa2)
Length = 303
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 8/108 (7%)
Query: 24 KPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLLDNTRIHILPSMNPDGYEV 83
KP + A +H E V + L V +Y DP I +LD I +LP NPDGY
Sbjct: 52 KPAIWLDAGIHAREWVTQATALWTANKIVSDYGKDPSITSILDALDIFLLPVTNPDGYVF 111
Query: 84 A-------REGQCEGGQGRYNARGFDLNRNFPDYFKQNNKRGQPETDA 124
+ R+ + + G G D NRN+ F P +D+
Sbjct: 112 SQTKNRMWRKTRSKVSAGSL-CVGVDPNRNWDAGFGGPGASSNPCSDS 158
>pdb|1AYE|A Chain A, Human Procarboxypeptidase A2
Length = 401
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 43/106 (40%), Gaps = 5/106 (4%)
Query: 24 KPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLLDNTRIHILPSMNPDGYEV 83
KP + A +H E V + L V +Y DP I +LD I +LP NPDGY
Sbjct: 151 KPAIWLDAGIHAREWVTQATALWTANKIVSDYGKDPSITSILDALDIFLLPVTNPDGYVF 210
Query: 84 AREGQCEGGQGRYNAR-----GFDLNRNFPDYFKQNNKRGQPETDA 124
++ + R G D NRN+ F P +D+
Sbjct: 211 SQTKNRMWRKTRSKVSGSLCVGVDPNRNWDAGFGGPGASSNPCSDS 256
>pdb|1JQG|A Chain A, Crystal Structure Of The Carboxypeptidase A From
Helicoverpa Armigera
Length = 433
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 82/216 (37%), Gaps = 41/216 (18%)
Query: 24 KPDVKYVANMHGNEAVGRELMLHLIQYFV-DNYNTDPYIKWLLDNTRIHILPSMNPDGY- 81
KP V + +H E V L+ I V D +D L++N ILP NPDGY
Sbjct: 171 KPVVMMQSLLHCREWVTLPATLYAIHKLVIDVTESD-----LINNIDWIILPVANPDGYV 225
Query: 82 ------EVAREGQCEGGQGRYNARGFDLNRNF-------------PDYFKQNNKRGQPET 122
R+ + G G DLNRNF D F + +PE+
Sbjct: 226 HTFGGDRYWRKNRATGYMAGNLCMGVDLNRNFGMNWGTASSSSVCSDTFHGRSAFSEPES 285
Query: 123 ----DAVKEWTSKIQFVLSGGLHGGALVASYPFDNTPNSSEYLELNNKRGQPETDAVKEW 178
D + E +++ L G ++ Y P+++ L L + D VK W
Sbjct: 286 SVIRDIIAEHRNRMALYLDIHSFGSMILYGYGNGVLPSNALQLHLIGVQMAQAIDRVK-W 344
Query: 179 TSKIQFVL----------SGGLHGGALVASYPFDNT 204
+S +++ SGG A+ A+ PF T
Sbjct: 345 SSNKDYIVGNIFHVLYAASGGASDYAMQAAAPFSYT 380
>pdb|4A94|A Chain A, Structure Of The Carboxypeptidase Inhibitor From Nerita
Versicolor In Complex With Human Cpa4
pdb|4A94|B Chain B, Structure Of The Carboxypeptidase Inhibitor From Nerita
Versicolor In Complex With Human Cpa4
Length = 310
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 22 IGKPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLLDNTRIHILPSMNPDGY 81
+ +P V A +H E + + + + V +Y DP I +L+ I +LP NPDGY
Sbjct: 58 VRRPAVWLNAGIHSREWISQATAIWTARKIVSDYQRDPAITSILEKMDIFLLPVANPDGY 117
>pdb|2BO9|A Chain A, Human Carboxypeptidase A4 In Complex With Human Latexin.
pdb|2BO9|C Chain C, Human Carboxypeptidase A4 In Complex With Human Latexin
Length = 308
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 22 IGKPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLLDNTRIHILPSMNPDGY 81
+ +P V A +H E + + + + V +Y DP I +L+ I +LP NPDGY
Sbjct: 56 VRRPAVWLNAGIHSREWISQATAIWTARKIVSDYQRDPAITSILEKMDIFLLPVANPDGY 115
>pdb|2PCU|A Chain A, Human Carboxypeptidase A4 In Complex With A Cleaved
Hexapeptide
Length = 305
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 22 IGKPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLLDNTRIHILPSMNPDGY 81
+ +P V A +H E + + + + V +Y DP I +L+ I +LP NPDGY
Sbjct: 54 VRRPAVWLNAGIHSREWISQATAIWTARKIVSDYQRDPAITSILEKMDIFLLPVANPDGY 113
>pdb|2BOA|A Chain A, Human Procarboxypeptidase A4.
pdb|2BOA|B Chain B, Human Procarboxypeptidase A4
Length = 404
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 22 IGKPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLLDNTRIHILPSMNPDGY 81
+ +P V A +H E + + + + V +Y DP I +L+ I +LP NPDGY
Sbjct: 152 VRRPAVWLNAGIHSREWISQATAIWTARKIVSDYQRDPAITSILEKMDIFLLPVANPDGY 211
>pdb|4A37|A Chain A, Metallo-Carboxypeptidase From Pseudomonas Aeruginosa
pdb|4A37|B Chain B, Metallo-Carboxypeptidase From Pseudomonas Aeruginosa
pdb|4A38|A Chain A, Metallo-Carboxypeptidase From Pseudomonas Aureginosa In
Complex With L-Benzylsuccinic Acid
pdb|4A38|B Chain B, Metallo-Carboxypeptidase From Pseudomonas Aureginosa In
Complex With L-Benzylsuccinic Acid
pdb|4A39|A Chain A, Metallo-Carboxypeptidase From Pseudomonas Aeruginosa In
Complex With (2-Guanidinoethylmercapto)succinic Acid
pdb|4A39|B Chain B, Metallo-Carboxypeptidase From Pseudomonas Aeruginosa In
Complex With (2-Guanidinoethylmercapto)succinic Acid
Length = 388
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 14/100 (14%)
Query: 6 RDLWVMVVSASPYEHMIGKPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLL 65
RD+ ++ V P H+ + +A H E + M LI+ +T+ ++ LL
Sbjct: 156 RDIELLRVRRHPDSHL----KLWVIAQQHPGEHMAEWFMEGLIERLQRPDDTE--MQRLL 209
Query: 66 DNTRIHILPSMNPDGYEVAREGQCEGGQGRYNARGFDLNR 105
+ ++++P+MNPDG G R NA G DLNR
Sbjct: 210 EKADLYLVPNMNPDG--------AFHGNLRTNAAGQDLNR 241
>pdb|3L2N|A Chain A, Crystal Structure Of Putative Carboxypeptidase A
(yp_562911.1) From Shewanella Denitrificans Os-217 At
2.39 A Resolution
pdb|3L2N|B Chain B, Crystal Structure Of Putative Carboxypeptidase A
(yp_562911.1) From Shewanella Denitrificans Os-217 At
2.39 A Resolution
Length = 395
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 10/84 (11%)
Query: 24 KPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLLDNTRIHILPSMNPDGYEV 83
K + A H E L+ L+ +DN P K LLD +I+P+ NPDG
Sbjct: 175 KKSIWITARQHPGETXAEWLVEGLLNQLLDN--DCPTSKALLDKANFYIVPNXNPDG--- 229
Query: 84 AREGQCEGGQGRYNARGFDLNRNF 107
G R NA G +LNR +
Sbjct: 230 -----SVRGHLRTNAVGANLNREW 248
>pdb|1NSA|A Chain A, Three-Dimensional Structure Of Porcine Procarboxypeptidase
B: A Structural Basis Of Its Inactivity
Length = 395
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 26/58 (44%)
Query: 24 KPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLLDNTRIHILPSMNPDGY 81
KP + H E + + ++ V Y + ++ LDN ++LP +N DGY
Sbjct: 145 KPAIFMDCGFHAREWISQAFCQWFVRDAVRTYGYEAHMTEFLDNLDFYVLPVLNIDGY 202
>pdb|2QVP|A Chain A, Crystal Structure Of A Putative Metallopeptidase
(Sama_0725) From Shewanella Amazonensis Sb2b At 2.00 A
Resolution
pdb|2QVP|B Chain B, Crystal Structure Of A Putative Metallopeptidase
(Sama_0725) From Shewanella Amazonensis Sb2b At 2.00 A
Resolution
pdb|2QVP|C Chain C, Crystal Structure Of A Putative Metallopeptidase
(Sama_0725) From Shewanella Amazonensis Sb2b At 2.00 A
Resolution
Length = 275
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 22/105 (20%)
Query: 23 GKPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLLDNTRIHILPSMNPDGYE 82
G P++ A HG E+ G +LH F+ + + L + +LP +NP G+
Sbjct: 64 GLPNLLISAGFHGEESAGPWGLLH----FLSQLDGE-----LFKRVNLSVLPLVNPTGFA 114
Query: 83 VAREGQCEGGQGRYNARGFDLNRNFPDYFKQNNKRGQPETDAVKE 127
R+N G + NR F F +N K +P D E
Sbjct: 115 KGH---------RFNELGENPNRGF---FIENGK-AKPGADTSAE 146
>pdb|2PET|A Chain A, Lutheran Glycoprotein, N-Terminal Domains 1 And 2.
pdb|2PF6|A Chain A, Lutheran Glycoprotein, N-Terminal Domains 1 And 2
pdb|2PF6|B Chain B, Lutheran Glycoprotein, N-Terminal Domains 1 And 2
Length = 231
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 28/65 (43%)
Query: 21 MIGKPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLLDNTRIHILPSMNPDG 80
+ KP+ V+ G +V + + N N P I W + R+ + MNP+G
Sbjct: 112 VFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEG 171
Query: 81 YEVAR 85
Y +R
Sbjct: 172 YMTSR 176
>pdb|1CPX|A Chain A, Beta Form Of Carboxypeptidase A (Residues 3-307) From
Bovine Pancreas In An Orthorhombic Crystal Form With Two
Zinc Ions In The Active Site.
pdb|1F57|A Chain A, Carboxypeptidase A Complex With D-Cysteine At 1.75 A
pdb|1M4L|A Chain A, Structure Of Native Carboxypeptidase A At 1.25 Resolution
pdb|1ARL|A Chain A, Carboxypeptidase A With Zn Removed
pdb|2RFH|A Chain A, Crystal Structure Analysis Of
Cpa-2-Benzyl-3-Nitropropanoic Acid Complex
Length = 307
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 5/102 (4%)
Query: 24 KPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLLDNTRIHILPSMNPDGYEV 83
+P + +H E + + + + F ++Y DP +LD+ I + NPDG+
Sbjct: 59 RPAIWIDLGIHSREWITQATGVWFAKKFTEDYGQDPSFTAILDSMDIFLEIVTNPDGFAF 118
Query: 84 AREGQCEGGQGRYNAR-----GFDLNRNFPDYFKQNNKRGQP 120
+ R G D NRN+ F + P
Sbjct: 119 THSQNRLWRKTRSVTSSSLCVGVDANRNWDAGFGKAGASSSP 160
>pdb|1EE3|P Chain P, Cadmium-Substituted Bovine Pancreatic Carboxypeptidase A
(Alfa-Form) At Ph 7.5 And 2 Mm Chloride In Monoclinic
Crystal Form
pdb|1ELL|P Chain P, Cadmium-Substituted Bovine Pancreatic Carboxypeptidase A
(Alfa-Form) At Ph 7.5 And 0.25 M Chloride In Monoclinic
Crystal Form.
pdb|1ELM|P Chain P, Cadmium-Substituted Bovine Pacreatic Carboxypeptidase A
(Alfa-Form) At Ph 5.5 And 2 Mm Chloride In Monoclinic
Crystal Form.
pdb|1ZLH|A Chain A, Crystal Structure Of The Tick Carboxypeptidase Inhibitor
In Complex With Bovine Carboxypeptidase A
pdb|2ABZ|A Chain A, Crystal Structure Of C19aC43A MUTANT OF LEECH
Carboxypeptidase Inhibitor In Complex With Bovine
Carboxypeptidase A
pdb|2ABZ|B Chain B, Crystal Structure Of C19aC43A MUTANT OF LEECH
Carboxypeptidase Inhibitor In Complex With Bovine
Carboxypeptidase A
pdb|1ARM|A Chain A, Carboxypeptidase A With Zn Replaced By Hg
pdb|1YME|A Chain A, Structure Of Carboxypeptidase
pdb|3I1U|A Chain A, Carboxypeptidase A Inhibited By A Thiirane Mechanism-Based
Inactivator
pdb|3HLP|A Chain A, Carboxypeptidase A Liganded To An Organic Small-Molecule:
Conformational Changes
pdb|3HLP|B Chain B, Carboxypeptidase A Liganded To An Organic Small-Molecule:
Conformational Changes
pdb|3HUV|A Chain A, Carboxypeptidase A Liganded To An Organic Small-Molecule:
Conformational Changes
Length = 309
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 5/102 (4%)
Query: 24 KPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLLDNTRIHILPSMNPDGYEV 83
+P + +H E + + + + F ++Y DP +LD+ I + NPDG+
Sbjct: 59 RPAIWIDLGIHSREWITQATGVWFAKKFTEDYGQDPSFTAILDSMDIFLEIVTNPDGFAF 118
Query: 84 AREGQCEGGQGRYNAR-----GFDLNRNFPDYFKQNNKRGQP 120
+ R G D NRN+ F + P
Sbjct: 119 THSQNRLWRKTRSVTSSSLCVGVDANRNWDAGFGKAGASSSP 160
>pdb|3FX6|A Chain A, X-Ray Crystallographic Studies On The Complex Of
Carboxypeptidase A With The Inhibitor Using Alpha-Nitro
Ketone As The Zinc-Binding Group
pdb|3FX6|C Chain C, X-Ray Crystallographic Studies On The Complex Of
Carboxypeptidase A With The Inhibitor Using Alpha-Nitro
Ketone As The Zinc-Binding Group
pdb|3FX6|E Chain E, X-Ray Crystallographic Studies On The Complex Of
Carboxypeptidase A With The Inhibitor Using Alpha-Nitro
Ketone As The Zinc-Binding Group
pdb|3FVL|A Chain A, Crystallogic Studies On The Complex Of Carboxypeptidase A
With Inhibitors Using Alpha-Hydroxy Ketone As
Zinc-Binding Group
pdb|3FVL|C Chain C, Crystallogic Studies On The Complex Of Carboxypeptidase A
With Inhibitors Using Alpha-Hydroxy Ketone As
Zinc-Binding Group
pdb|3FVL|E Chain E, Crystallogic Studies On The Complex Of Carboxypeptidase A
With Inhibitors Using Alpha-Hydroxy Ketone As
Zinc-Binding Group
Length = 307
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 5/102 (4%)
Query: 24 KPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLLDNTRIHILPSMNPDGYEV 83
+P + +H E + + + + F ++Y DP +LD+ I + NPDG+
Sbjct: 59 RPAIWIDLGIHSREWITQATGVWFAKKFTEDYGQDPSFTAILDSMDIFLEIVTNPDGFAF 118
Query: 84 AREGQCEGGQGRYNAR-----GFDLNRNFPDYFKQNNKRGQP 120
+ R G D NRN+ F + P
Sbjct: 119 THSQNRLWRKTRSVTSSSLCVGVDANRNWDAGFGKAGASSSP 160
>pdb|1PYT|B Chain B, Ternary Complex Of Procarboxypeptidase A, Proproteinase E,
And Chymotrypsinogen C
pdb|3KGQ|A Chain A, Carboxypeptidase A Liganded To An Organic Small-Molecule:
Conformational Changes
Length = 309
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 5/102 (4%)
Query: 24 KPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLLDNTRIHILPSMNPDGYEV 83
+P + +H E + + + + F ++Y DP +LD+ I + NPDG+
Sbjct: 59 RPAIWIDLGIHSREWITQATGVWFAKKFTEDYGQDPSFTAILDSMDIFLEIVTNPDGFAF 118
Query: 84 AREGQCEGGQGRYNAR-----GFDLNRNFPDYFKQNNKRGQP 120
+ R G D NRN+ F + P
Sbjct: 119 THSQNRLWRKTRSVTSSSLCVGVDANRNWDAGFGKAGASSSP 160
>pdb|1HDQ|A Chain A, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With D-N-Hydroxyaminocarbonyl Phenylalanine At
2.3 A
pdb|2CTB|A Chain A, The High Resolution Crystal Structure Of The Complex
Between Carboxypeptidase A And L-Phenyl Lactate
pdb|2CTC|A Chain A, The High Resolution Crystal Structure Of The Complex
Between Carboxypeptidase A And L-Phenyl Lactate
Length = 307
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 5/102 (4%)
Query: 24 KPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLLDNTRIHILPSMNPDGYEV 83
+P + +H E + + + + F ++Y DP +LD+ I + NPDG+
Sbjct: 59 RPAIWIDLGIHSREWITQATGVWFAKKFTEDYGQDPSFTAILDSMDIFLEIVTNPDGFAF 118
Query: 84 AREGQCEGGQGRYNAR-----GFDLNRNFPDYFKQNNKRGQP 120
+ R G D NRN+ F + P
Sbjct: 119 THSQNRLWRKTRSVTSSSLCVGVDANRNWDAGFGKAGASSSP 160
>pdb|3IEH|A Chain A, Crystal Structure Of Putative Metallopeptidase
(Yp_001051774.1) From Shewanella Baltica Os155 At 2.45 A
Resolution
Length = 276
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 18/85 (21%)
Query: 23 GKPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLLDNTRIHILPSMNPDGYE 82
G P + A HG E+ G +LH F+ + D L + + +LP +NP G+
Sbjct: 65 GLPSLLISAGFHGEESAGPWGLLH----FLSEASAD-----LFERVNLSLLPLVNPTGFS 115
Query: 83 VAREGQCEGGQGRYNARGFDLNRNF 107
R+N G + NR F
Sbjct: 116 RGH---------RFNKYGENPNRGF 131
>pdb|2H4T|A Chain A, Crystal Structure Of Rat Carnitine Palmitoyltransferase Ii
pdb|2H4T|B Chain B, Crystal Structure Of Rat Carnitine Palmitoyltransferase Ii
Length = 626
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 40/102 (39%), Gaps = 13/102 (12%)
Query: 167 RGQPETDAVKEWTSKIQFVLSGGLHGGALVASYPFDNTPNSM------FQ----SYSSAP 216
+ QP + F LSG L G A FD T ++ FQ +
Sbjct: 370 QSQPAATNSSASVETLSFNLSGALKAGITAAKEKFDTTVKTLSIDSIQFQRGGKEFLKKK 429
Query: 217 SLTPDDDVFKHLALTYSRNH-PTMATGLACKSNTPAFKQGIT 257
L+PD + + R + T+AT +C +T AFK G T
Sbjct: 430 QLSPDAVAQLAFQMAFLRQYGQTVATYESC--STAAFKHGRT 469
>pdb|2FW3|A Chain A, Crystal Structure Of Rat Carnitine Palmitoyltransferase 2
In Complex With Antidiabetic Drug St1326
pdb|2RCU|A Chain A, Crystal Structure Of Rat Carnitine Palmitoyltransferase 2
In Complex With R-3-(Hexadecanoylamino)-4-
(Trimethylazaniumyl)butanoate
pdb|2RCU|B Chain B, Crystal Structure Of Rat Carnitine Palmitoyltransferase 2
In Complex With R-3-(Hexadecanoylamino)-4-
(Trimethylazaniumyl)butanoate
Length = 653
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 40/102 (39%), Gaps = 13/102 (12%)
Query: 167 RGQPETDAVKEWTSKIQFVLSGGLHGGALVASYPFDNTPNSM------FQ----SYSSAP 216
+ QP + F LSG L G A FD T ++ FQ +
Sbjct: 395 QSQPAATNSSASVETLSFNLSGALKAGITAAKEKFDTTVKTLSIDSIQFQRGGKEFLKKK 454
Query: 217 SLTPDDDVFKHLALTYSRNH-PTMATGLACKSNTPAFKQGIT 257
L+PD + + R + T+AT +C +T AFK G T
Sbjct: 455 QLSPDAVAQLAFQMAFLRQYGQTVATYESC--STAAFKHGRT 494
>pdb|1ZLI|A Chain A, Crystal Structure Of The Tick Carboxypeptidase Inhibitor
In Complex With Human Carboxypeptidase B
Length = 309
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 24/58 (41%)
Query: 24 KPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLLDNTRIHILPSMNPDGY 81
KP + H E + ++ V Y + + LL+ ++LP +N DGY
Sbjct: 58 KPAIFMDCGFHAREWISPAFCQWFVREAVRTYGREIQVTELLNKLDFYVLPVLNIDGY 115
>pdb|1YQ1|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Glutathione
S-Transferase
pdb|1YQ1|B Chain B, Structural Genomics Of Caenorhabditis Elegans: Glutathione
S-Transferase
Length = 208
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 43 LMLHLIQYFVDNYNTDPYIKWL--LDNTRIHILPSMNPDGYEVAREGQCEGGQGRYNARG 100
L+ HL + +P WL D+T LP +N DG+E+ + G RY AR
Sbjct: 20 LLFHLAGVQFEEVRXNPDQTWLDIKDSTPXKQLPVLNIDGFELPQSGAI----LRYLARK 75
Query: 101 F 101
F
Sbjct: 76 F 76
>pdb|1CBX|A Chain A, Crystal Structure Of The Complex Between Carboxypeptidase
A And The Biproduct Analog Inhibitor L-Benzylsuccinate
At 2.0 Angstroms Resolution
pdb|1CPS|A Chain A, Structural Comparison Of Sulfodiimine And Sulfonamide
Inhibitors In Their Complexes With Zinc Enzymes
Length = 307
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 5/102 (4%)
Query: 24 KPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLLDNTRIHILPSMNPDGYEV 83
+P + +H E + + + + F +NY +P +LD+ I + NP+G+
Sbjct: 59 RPAIWIDLGIHSREWITQATGVWFAKKFTENYGQNPSFTAILDSMDIFLEIVTNPNGFAF 118
Query: 84 AREGQCEGGQGRYNAR-----GFDLNRNFPDYFKQNNKRGQP 120
+ R G D NRN+ F + P
Sbjct: 119 THSENRLWRKTRSVTSSSLCVGVDANRNWDAGFGKAGASSSP 160
>pdb|1HDU|A Chain A, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With Aminocarbonylphenylalanine At 1.75 A
pdb|1HDU|B Chain B, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With Aminocarbonylphenylalanine At 1.75 A
pdb|1HDU|D Chain D, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With Aminocarbonylphenylalanine At 1.75 A
pdb|1HDU|E Chain E, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With Aminocarbonylphenylalanine At 1.75 A
pdb|1HEE|A Chain A, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With L-N-Hydroxyaminocarbonyl Phenylalanine At
2.3 A
pdb|1HEE|B Chain B, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With L-N-Hydroxyaminocarbonyl Phenylalanine At
2.3 A
pdb|1HEE|D Chain D, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With L-N-Hydroxyaminocarbonyl Phenylalanine At
2.3 A
pdb|1HEE|E Chain E, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With L-N-Hydroxyaminocarbonyl Phenylalanine At
2.3 A
pdb|1IY7|A Chain A, Crystal Structure Of Cpa And Sulfamide-based Inhibitor
Complex
pdb|5CPA|A Chain A, Refined Crystal Structure Of Carboxypeptidase A At 1.54
Angstroms Resolution.
pdb|6CPA|A Chain A, Crystal Structure Of The Complex Of Carboxypeptidase A
With A Strongly Bound Phosphonate In A New Crystalline
Form: Comparison With Structures Of Other Complexes
pdb|7CPA|A Chain A, Comparison Of The Structures Of Three Carboxypeptidase A-
Phosphonate Complexes Determined By X-Ray
Crystallography
pdb|8CPA|A Chain A, Comparison Of The Structures Of Three Carboxypeptidase A-
Phosphonate Complexes Determined By X-Ray
Crystallography
pdb|3CPA|A Chain A, X-Ray Crystallographic Investigation Of Substrate Binding
To Carboxypeptidase A At Subzero Temperature
pdb|4CPA|A Chain A, Refined Crystal Structure Of The Potato Inhibitor Complex
Of Carboxypeptidase A At 2.5 Angstroms Resolution
pdb|4CPA|B Chain B, Refined Crystal Structure Of The Potato Inhibitor Complex
Of Carboxypeptidase A At 2.5 Angstroms Resolution
Length = 307
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 5/102 (4%)
Query: 24 KPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLLDNTRIHILPSMNPDGYEV 83
+P + +H E + + + + F +NY +P +LD+ I + NP+G+
Sbjct: 59 RPAIWIDLGIHSREWITQATGVWFAKKFTENYGQNPSFTAILDSMDIFLEIVTNPNGFAF 118
Query: 84 AREGQCEGGQGRYNAR-----GFDLNRNFPDYFKQNNKRGQP 120
+ R G D NRN+ F + P
Sbjct: 119 THSENRLWRKTRSVTSSSLCVGVDANRNWDAGFGKAGASSSP 160
>pdb|1BAV|A Chain A, Carboxypeptidase A Complexed With
2-Benzyl-3-Iodo-Propanoic Acid (Bip)
pdb|1BAV|B Chain B, Carboxypeptidase A Complexed With
2-Benzyl-3-Iodo-Propanoic Acid (Bip)
pdb|1BAV|C Chain C, Carboxypeptidase A Complexed With
2-Benzyl-3-Iodo-Propanoic Acid (Bip)
pdb|1BAV|D Chain D, Carboxypeptidase A Complexed With
2-Benzyl-3-Iodo-Propanoic Acid (Bip)
Length = 309
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 5/102 (4%)
Query: 24 KPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLLDNTRIHILPSMNPDGYEV 83
+P + +H E + + + + F +NY +P +LD+ I + NP+G+
Sbjct: 59 RPAIWIDLGIHSREWITQATGVWFAKKFTENYGQNPSFTAILDSMDIFLEIVTNPNGFAF 118
Query: 84 AREGQCEGGQGRYNAR-----GFDLNRNFPDYFKQNNKRGQP 120
+ R G D NRN+ F + P
Sbjct: 119 THSENRLWRKTRSVTSSSLCVGVDANRNWDAGFGKAGASSSP 160
>pdb|3CKK|A Chain A, Crystal Structure Of Human Methyltransferase-Like Protein
1
Length = 235
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 30/146 (20%), Positives = 57/146 (39%), Gaps = 8/146 (5%)
Query: 102 DLNRNFPDYFK---QNNKRGQPETDAVKEWTSKIQFVLSGGLHGGALVASYPFDNTPNSS 158
D + +P++F QN P+ K ++++F G +GG LV + +P
Sbjct: 15 DWSELYPEFFAPLTQNQSHDDPKDKKEKRAQAQVEFADIGCGYGGLLV-----ELSPLFP 69
Query: 159 EYLELNNKRGQPETDAVKEWTSKIQFVLSGGLHGGALVASYPFDNTPNSMFQSYSSAPSL 218
+ L L + +D V++ ++ +GG A + S + PN ++ +
Sbjct: 70 DTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLTKMFF 129
Query: 219 TPDDDVFKHLALTYSRNHPTMATGLA 244
D FK + PT+ A
Sbjct: 130 LFPDPHFKRTKHKWRIISPTLLAEYA 155
>pdb|1KWM|A Chain A, Human Procarboxypeptidase B: Three-Dimensional Structure
And Implications For Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi)
pdb|1KWM|B Chain B, Human Procarboxypeptidase B: Three-Dimensional Structure
And Implications For Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi)
Length = 402
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 24/58 (41%)
Query: 24 KPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLLDNTRIHILPSMNPDGY 81
KP + H E + ++ V Y + + LL+ ++LP +N DGY
Sbjct: 151 KPAIFMDCGFHAREWISPAFCQWFVREAVRTYGREIQVTELLNKLDFYVLPVLNIDGY 208
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,360,232
Number of Sequences: 62578
Number of extensions: 518988
Number of successful extensions: 1080
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1037
Number of HSP's gapped (non-prelim): 45
length of query: 315
length of database: 14,973,337
effective HSP length: 99
effective length of query: 216
effective length of database: 8,778,115
effective search space: 1896072840
effective search space used: 1896072840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)