RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7350
(315 letters)
>3mn8_A LP15968P; catalytic domain of alpha/beta-hydrolase fold,
C-terminal, A transthyretin-like domain, hydrolase; HET:
NAG GEM; 2.70A {Drosophila melanogaster}
Length = 435
Score = 289 bits (740), Expect = 1e-95
Identities = 121/303 (39%), Positives = 164/303 (54%), Gaps = 53/303 (17%)
Query: 6 RDLWVMVVSASPYEHMIGKPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLL 65
R+L + +S + + P VKY+ANMHG+E VGR+L++++ QY + N+ + L+
Sbjct: 73 RNLLALQISRNTRSRNLLTPPVKYIANMHGDETVGRQLLVYMAQYLLGNHERISDLGQLV 132
Query: 66 DNTRIHILPSMNPDGYEVAREGQCEGG---QGRYNARGFDLNRNFPDYFKQNNKRGQPET 122
++T I+++P+MNPDGY +++EG CE GR NA DLNR+FPD +Q++
Sbjct: 133 NSTDIYLVPTMNPDGYALSQEGNCESLPNYVGRGNAANIDLNRDFPDRLEQSHVHQLRA- 191
Query: 123 DAVKEWTSKIQFVLSGGLHGGALVASYPFDNTPNSSEYLELNNKRGQPETDAVKEWTSKI 182
QPET A+ W
Sbjct: 192 ---------------------------QSR----------------QPETAALVNWIVSK 208
Query: 183 QFVLSGGLHGGALVASYPFDNTPNSMFQSYSSAPSLTPDDDVFKHLALTYSRNHPTMATG 242
FVLS HGGA+VASYP+DN+ + SLTPDD VFK LA TYS NHP M G
Sbjct: 209 PFVLSANFHGGAVVASYPYDNSLA---HNECCEESLTPDDRVFKQLAHTYSDNHPIMRKG 265
Query: 243 LACKSNTPAFKQGITNGAQWYPLTGGMQDFNYVWYGCMEVTLELSCCKFPPASELPKMWE 302
C +F GITNGA WY L+GGMQDFNY + C E+T+ELSCCK+P AS LP+ W+
Sbjct: 266 NNC---NDSFSGGITNGAHWYELSGGMQDFNYAFSNCFELTIELSCCKYPAASTLPQEWQ 322
Query: 303 ENR 305
N+
Sbjct: 323 RNK 325
>1h8l_A Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent
protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta
specularioides} SCOP: b.3.2.1 c.56.5.1 PDB: 1qmu_A*
Length = 380
Score = 284 bits (727), Expect = 2e-94
Identities = 132/302 (43%), Positives = 169/302 (55%), Gaps = 57/302 (18%)
Query: 6 RDLWVMVVSASPYEHMIGKPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLL 65
R+L+VM +S +P H G+P+ KY+ NMHGNE VGREL+L+LI+Y N+ TDP + L+
Sbjct: 43 RELYVMEISDNPGIHEAGEPEFKYIGNMHGNEVVGRELLLNLIEYLCKNFGTDPEVTDLV 102
Query: 66 DNTRIHILPSMNPDGYEVAREGQCEGGQGRYNARGFDLNRNFPDYFKQNNKRGQPETDAV 125
+TRIHI+PSMNPDGYE ++EG G GR N+ +DLNRNFPD F Q
Sbjct: 103 QSTRIHIMPSMNPDGYEKSQEGDRGGTVGRNNSNNYDLNRNFPDQFFQVT---------- 152
Query: 126 KEWTSKIQFVLSGGLHGGALVASYPFDNTPNSSEYLELNNKRGQPETDAVKEWTSKIQFV 185
+ + PET AV W FV
Sbjct: 153 ------------------------------DPPQ----------PETLAVMSWLKTYPFV 172
Query: 186 LSGGLHGGALVASYPFDNTPNSMFQSYSSAPSLTPDDDVFKHLALTYSRNHPTMATGLAC 245
LS LHGG+LV +YPFD+ + + S +PDD VF+ LAL+YS+ + M G C
Sbjct: 173 LSANLHGGSLVVNYPFDDDEQGI-----AIYSKSPDDAVFQQLALSYSKENKKMYQGSPC 227
Query: 246 KS--NTPAFKQGITNGAQWYPLTGGMQDFNYVWYGCMEVTLELSCCKFPPASELPKMWEE 303
K T F GITNGAQWY + GGMQD+NY+ C EVT+EL C K+P A ELPK WE+
Sbjct: 228 KDLYPTEYFPHGITNGAQWYNVPGGMQDWNYLNTNCFEVTIELGCVKYPKAEELPKYWEQ 287
Query: 304 NR 305
NR
Sbjct: 288 NR 289
>2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc
peptidase, transthyretin-like domain, processing,
peptide modification, hydrolase; HET: NAG; 2.10A {Homo
sapiens}
Length = 439
Score = 279 bits (714), Expect = 9e-92
Identities = 125/305 (40%), Positives = 157/305 (51%), Gaps = 39/305 (12%)
Query: 6 RDLWVMVVSASPYEHMIGKPDVKYVANMHGNEAVGRELMLHLIQYFVDNY-NTDPYIKWL 64
R L+V+ S P H +P+VKYV NMHGNEA+GRELML L ++ + + N + I L
Sbjct: 39 RHLYVLEFSDHPGIHEPLEPEVKYVGNMHGNEALGRELMLQLSEFLCEEFRNRNQRIVQL 98
Query: 65 LDNTRIHILPSMNPDGYEVAREGQCEGG---QGRYNARGFDLNRNFPDYFKQNNKRGQPE 121
+ +TRIHILPSMNPDGYEVA GR NA G DLNRNFPD
Sbjct: 99 IQDTRIHILPSMNPDGYEVAAAQGPNKPGYLVGRNNANGVDLNRNFPDLN---------- 148
Query: 122 TDAVKEWTSKIQFVLSGGLHGGALVASYPFDNTPNSSEYLELNNKRGQPETDAVKEWTSK 181
++ + + + +PET AV W
Sbjct: 149 ----------------TYIYYNEKYGG-----PNHHLPLPDNWKSQVEPETRAVIRWMHS 187
Query: 182 IQFVLSGGLHGGALVASYPFDNTPNSMFQSYS-SAPSLTPDDDVFKHLALTYSRNHPTMA 240
FVLS LHGGA+VA+YP+D + + +A + TPDD +F+ LA YS H M
Sbjct: 188 FNFVLSANLHGGAVVANYPYDKSFEHRVRGVRRTASTPTPDDKLFQKLAKVYSYAHGWMF 247
Query: 241 TGLACKSNTPAFKQGITNGAQWYPLTGGMQDFNYVWYGCMEVTLELSCCKFPPASELPKM 300
G C F GITNGA WY L+ GMQDFNY+ C E+TLELSC KFPP EL +
Sbjct: 248 QGWNCGDY---FPDGITNGASWYSLSKGMQDFNYLHTNCFEITLELSCDKFPPEEELQRE 304
Query: 301 WEENR 305
W N+
Sbjct: 305 WLGNK 309
>1uwy_A Carboxypeptidase M; metallopeptidase, GPI-anchor, metalloprotease,
zinc, lipoprotein, hydrolase, structural proteomics in
europe, spine; HET: NAG; 3.0A {Homo sapiens} SCOP:
b.3.2.1 c.56.5.1
Length = 426
Score = 274 bits (701), Expect = 5e-90
Identities = 140/300 (46%), Positives = 171/300 (57%), Gaps = 53/300 (17%)
Query: 6 RDLWVMVVSASPYEHMIGKPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLL 65
R+LWV+VV P EH IG P+ KYVANMHG+E VGREL+LHLI Y V + DP I L+
Sbjct: 38 RNLWVLVVGRFPKEHRIGIPEFKYVANMHGDETVGRELLLHLIDYLVTSDGKDPEITNLI 97
Query: 66 DNTRIHILPSMNPDGYEVAREGQCEGGQGRYNARGFDLNRNFPDYFKQNNKRGQPETDAV 125
++TRIHI+PSMNPDG+E ++ C GR N +DLNRNFPD F+ NN QPET AV
Sbjct: 98 NSTRIHIMPSMNPDGFEAVKKPDCYYSIGRENYNQYDLNRNFPDAFEYNNVSRQPETVAV 157
Query: 126 KEWTSKIQFVLSGGLHGGALVASYPFDNTPNSSEYLELNNKRGQPETDAVKEWTSKIQFV 185
+W FVLS LHGGALVASYPFDN ++ L
Sbjct: 158 MKWLKTETFVLSANLHGGALVASYPFDNGVQATGALY----------------------- 194
Query: 186 LSGGLHGGALVASYPFDNTPNSMFQSYSSAPSLTPDDDVFKHLALTYSRNHPTMATGLAC 245
+ SLTPDDDVF++LA TY+ +P M G C
Sbjct: 195 -----------------------------SRSLTPDDDVFQYLAHTYASRNPNMKKGDEC 225
Query: 246 KSNTPAFKQGITNGAQWYPLTGGMQDFNYVWYGCMEVTLELSCCKFPPASELPKMWEENR 305
K+ F G+TNG WYPL GGMQD+NY+W C E+TLELSCCK+P +LP W N+
Sbjct: 226 KNKM-NFPNGVTNGYSWYPLQGGMQDYNYIWAQCFEITLELSCCKYPREEKLPSFWNNNK 284
>3prt_A Carboxypeptidase T; hydrolase; 1.66A {Thermoactinomyces vulgaris}
PDB: 1obr_A 3qnv_A
Length = 323
Score = 194 bits (496), Expect = 2e-60
Identities = 68/323 (21%), Positives = 113/323 (34%), Gaps = 85/323 (26%)
Query: 6 RDLWVMVVSASPYEHMIGKPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLL 65
R+LW + +S + +P+V Y A H E + E+ L+ + F NYN D I L+
Sbjct: 42 RELWAVKISDNVGTDE-NEPEVLYTALHHAREHLTVEMALYTLDLFTQNYNLDSRITNLV 100
Query: 66 DNTRIHILPSMNPDGYEVAREGQCEGG-------QGRYNARGFDLNRNFPDYFKQNNKRG 118
+N I+I+ ++NPDG E + G DLNRN+ +
Sbjct: 101 NNREIYIVFNINPDGGEYDISSGSYKSWRKNRQPNSGSSYVGTDLNRNYGYKW------- 153
Query: 119 QPETDAVKEWTSKIQFVLSGGLHGGALVASYPFDNTPNSSEYLELNNKRG-----QPETD 173
G GG+ +P+S Y RG PET
Sbjct: 154 --------------------GCCGGSS-------GSPSSETY------RGRSAFSAPETA 180
Query: 174 AVKEWTSKI------QFVLSGGLHGGALVASYPFDNTPNSMFQSYSSAPSLTPDDDVFKH 227
A++++ + Q H + + YP+ T + + D +VFK
Sbjct: 181 AMRDFINSRVVGGKQQIKTLITFHTYSELILYPYSYTYTDVPSDMT-----QDDFNVFKT 235
Query: 228 LALTYSRNHPTMATGLACKSNTPAFKQGITNGAQWYPLTGGMQDFNYVWYGCMEVTLELS 287
+A T ++ + G+ Y GGM D+ Y + T E+
Sbjct: 236 MANTMAQTNGYTP----------------QQGSDLYIADGGMDDWAYGQHKIFAFTFEMY 279
Query: 288 CCK-----FPPASELPKMWEENR 305
+PP + + N+
Sbjct: 280 PTSYNPGFYPPDEVIGRETSRNK 302
>3k2k_A Putative carboxypeptidase; structural genomics, joint center
structural genomics, JCSG, protein structure initiative;
2.49A {Burkholderia mallei atcc 23344}
Length = 403
Score = 129 bits (325), Expect = 8e-35
Identities = 49/307 (15%), Positives = 91/307 (29%), Gaps = 83/307 (27%)
Query: 3 CTRRDLWVMVVSASPYEHMIGKPDVKYVANMHGNEAVGRELMLHLIQYFVD--NYNTDPY 60
R + ++V+ +P E K V +A H E++ + L++ V +++ DP
Sbjct: 160 VEGRPMSLVVLG-TPDEAGAAKKKVWIIARQHPGESMAEWFIEGLVKRLVGWGDWSGDPV 218
Query: 61 IKWLLDNTRIHILPSMNPDGYEVAREGQCEGGQGRYNARGFDLNRNFPDYFKQNNKRGQP 120
+ L D+ +I+P+MNPDG G R NA G +LNR + + + P
Sbjct: 219 ARKLYDHATFYIVPNMNPDG--------SVHGNLRTNAAGANLNREWME----PDAERSP 266
Query: 121 ETDAVKEWTSKIQFVLSGGLHGGALVASYPFDNTPNSSEYLELNNKRGQPETDAVKEWTS 180
E V++ I L +HG +
Sbjct: 267 EVLVVRDAIHAIGCDLFFDIHGDEDLPYV------------------------------- 295
Query: 181 KIQFVLSGGLHGGALVASYPFDNTPNSMFQSYSSAPSLTPDDDVFKHLALTYSRNHPTMA 240
+ + F + + D FK + + H
Sbjct: 296 ------------------FAAGSEMLPGF-TEQQRVEQSAFIDSFKRASPDFQDEH---- 332
Query: 241 TGLACKSNTPAFKQGITNGAQWYPLTGGMQDFNYVWYGCMEVTLELSCCKFPPASELPKM 300
+ +++ +GC+ +TLE+ +
Sbjct: 333 ----GYPPGKYREDAFKLASKYI----------GHRFGCLSLTLEMPFKDNANLPDEHIG 378
Query: 301 WEENRLR 307
W R
Sbjct: 379 WNGARSA 385
>4a37_A Metallo-carboxypeptidase; metallo-protease, hydrolase; 1.60A
{Pseudomonas aeruginosa} PDB: 4a38_A 4a39_A*
Length = 388
Score = 112 bits (280), Expect = 2e-28
Identities = 39/168 (23%), Positives = 66/168 (39%), Gaps = 21/168 (12%)
Query: 3 CTRRDLWVMVVSASPYEHMIGKPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIK 62
RD+ ++ V P H + +A H E + M LI+ D ++
Sbjct: 153 VQGRDIELLRVRRHPDSH----LKLWVIAQQHPGEHMAEWFMEGLIERLQRPD--DTEMQ 206
Query: 63 WLLDNTRIHILPSMNPDGYEVAREGQCEGGQGRYNARGFDLNRNFPDYFKQNNKRGQPET 122
LL+ ++++P+MNPDG G R NA G DLNR + + + PE
Sbjct: 207 RLLEKADLYLVPNMNPDG--------AFHGNLRTNAAGQDLNRAWLE----PSAERSPEV 254
Query: 123 DAVKEWTSKIQFVLSGGLHGGALVA---SYPFDNTPNSSEYLELNNKR 167
V++ + L +HG + + + P + LE +R
Sbjct: 255 WFVQQEMKRHGVDLFLDIHGDEEIPHVFAAGCEGNPGYTPRLERLEQR 302
Score = 85.2 bits (210), Expect = 7e-19
Identities = 22/143 (15%), Positives = 35/143 (24%), Gaps = 19/143 (13%)
Query: 165 NKRGQPETDAVKEWTSKIQFVLSGGLHGGALVASYPFDNTPNSMFQSYSSAPSLTPDDDV 224
+ PE V++ + L +HG P+ P TP +
Sbjct: 247 SAERSPEVWFVQQEMKRHGVDLFLDIHGDE--------EIPHVFAAGCEGNPGYTPRLER 298
Query: 225 FKHLALTYSRNHPTMATGLACKSNTPAFKQGITNGAQWYPLTGGMQDFNYVWYGCMEVTL 284
+ + P G N A G Y C+ T+
Sbjct: 299 LEQRFREELMARGEFQ----IRHGYPRSAPGQANLALACNFVGQT-------YDCLAFTI 347
Query: 285 ELSCCKFPPASELPKMWEENRLR 307
E+ E W R +
Sbjct: 348 EMPFKDHDDNPEPGTGWSGARSK 370
>2qvp_A Uncharacterized protein; putative metallopeptidase, structural
genomics, joint center structural genomics, JCSG; HET:
MSE; 2.00A {Shewanella amazonensis}
Length = 275
Score = 88.6 bits (219), Expect = 1e-20
Identities = 43/284 (15%), Positives = 66/284 (23%), Gaps = 86/284 (30%)
Query: 23 GKPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLLDNTRIHILPSMNPDGYE 82
G P++ A HG E+ G +LH + + +LP +NP G+
Sbjct: 64 GLPNLLISAGFHGEESAGPWGLLHFLSQLDGEL---------FKRVNLSVLPLVNPTGFA 114
Query: 83 VAREGQCEGGQGRYNARGFDLNRNFPDYFKQNNKRGQPETDAVKEWTSKIQFVLSGGLHG 142
R+N G + NR F N + +P D
Sbjct: 115 KGH---------RFNELGENPNRGFFI----ENGKAKPGADT------------------ 143
Query: 143 GALVASYPFDNTPNSSEYLELNNKRGQPETDAVKEWTSKIQFVLSGGLHGGALVASYPFD 202
E + E +Q G L
Sbjct: 144 --------------------------SAEGRILLEHAHLLQVA----SRDGILTCHEDVL 173
Query: 203 NTPNSMFQSYSSAPSLTPDDDVFKHLALTYSRNHPTMATGLACKSNTPAFKQGITNGAQW 262
T Y+ PS P L + P A G + +G +
Sbjct: 174 MTD---TYVYTFEPSQAPGRF-SHSLRDALGQYFPIAADGD-------VDNCPVRSGVIF 222
Query: 263 YPLTGGMQDFNYVWYGCMEVTLELSCCKFPPASELPKMWEENRL 306
+ F + E P L + N
Sbjct: 223 NHFDTSFESFLVRSGARVGCCSET-----PGQQPLDQRILANAA 261
>1dtd_A Carboxypeptidase A2; carboxypeptidase A2, leech carboxypeptidase
inhibitor, hydrolase/hydrolase inhibitor complex; HET:
GLU; 1.65A {Homo sapiens} SCOP: c.56.5.1
Length = 303
Score = 78.6 bits (194), Expect = 7e-17
Identities = 40/186 (21%), Positives = 66/186 (35%), Gaps = 36/186 (19%)
Query: 6 RDLWVMVVSASPYEHMIGKPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLL 65
R + V+ S KP + A +H E V + L V +Y DP I +L
Sbjct: 39 RPMNVLKFSTGG-----DKPAIWLDAGIHAREWVTQATALWTANKIVSDYGKDPSITSIL 93
Query: 66 DNTRIHILPSMNPDGYEVAREG-------QCEGGQGRYNARGFDLNRNFPDYFKQNNK-- 116
D I +LP NPDGY ++ + + G G D NRN+ F
Sbjct: 94 DALDIFLLPVTNPDGYVFSQTKNRMWRKTRSKVSAGS-LCVGVDPNRNWDAGFGGPGASS 152
Query: 117 -------RGQ-----PETDAVKEW---TSKIQFVLSGGLHGGALVASYPF----DNTPNS 157
G E ++ ++ K++ + LH + + +P+ +
Sbjct: 153 NPCSDSYHGPSANSEVEVKSIVDFIKSHGKVKAFII--LHSYSQLLMFPYGYKCTKLDDF 210
Query: 158 SEYLEL 163
E E+
Sbjct: 211 DELSEV 216
>3b2y_A Metallopeptidase containing CO-catalytic metalloa site;
metallopeptidase containing CO-catalytic metalloactive
site; 1.74A {Shewanella denitrificans OS217} PDB:
3ieh_A*
Length = 275
Score = 77.9 bits (191), Expect = 9e-17
Identities = 38/284 (13%), Positives = 62/284 (21%), Gaps = 86/284 (30%)
Query: 23 GKPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLLDNTRIHILPSMNPDGYE 82
P + + HG EA G MLH ++ + + +LP +NP G++
Sbjct: 65 DLPSLLISSGFHGEEAAGPWGMLHFLRGLQPAL---------FERVNLSLLPLVNPTGFK 115
Query: 83 VAREGQCEGGQGRYNARGFDLNRNFPDYFKQNNKRGQPETDAVKEWTSKIQFVLSGGLHG 142
R+N G + NR F N + P E ++
Sbjct: 116 AGH---------RFNRFGENPNRGFTL----ENGKPTPNEHTSLEGKLLLEHAQLLCAAS 162
Query: 143 GALVASYPFDNTPNSSEYLELNNKRGQPETDAVKEWTSKIQFVLSGGLHGGALVASYPFD 202
+ + D L V S+
Sbjct: 163 RDGILTCHED------------------------------------VLMNETYVYSFEPT 186
Query: 203 NTPNSMFQSYSSAPSLTPDDDVFKHLALTYSRNHPTMATGLACKSNTPAFKQGITNGAQW 262
TP A + G P I N
Sbjct: 187 QTPGRFSLGLRDA----------------LGQYFKLAKDGF--IDECPVTDGVIFNHFDT 228
Query: 263 YPLTGGMQDFNYVWYGCMEVTLELSCCKFPPASELPKMWEENRL 306
+ F + E P + + + N
Sbjct: 229 -----SFEAFLVRSGAKLAACSET-----PGQEDFDRRVQANSA 262
>3d4u_A Tafia, carboxypeptidase B2; protease-inhibitor complex,
glycoprotein, hydrolase, metal-binding, metalloprotease,
protease, secret zymogen; 1.70A {Bos taurus} PDB: 3lms_A
Length = 309
Score = 77.4 bits (191), Expect = 2e-16
Identities = 36/210 (17%), Positives = 65/210 (30%), Gaps = 43/210 (20%)
Query: 6 RDLWVMVVSASPYEHMIGKPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLL 65
L+V+ VS K + +H E + L + Y + LL
Sbjct: 42 YPLYVLKVSKKEQR---AKNAMWIDCGIHAREWISPAFCLWFVGSVTYYYGKEKMHTNLL 98
Query: 66 DNTRIHILPSMNPDGYEVAREG--------QCEGGQGRYNARGFDLNRNFPDYFKQNNK- 116
+ +I+P +N DGY+ + G DLNRNF
Sbjct: 99 KHMDFYIMPVVNVDGYDYTWKKDRMWRKNRSLHEKNA---CVGTDLNRNFASKHWCGEGA 155
Query: 117 ---------RGQ-----PETDAVKEW----TSKIQFVLSGGLHGGALVASYPF----DNT 154
G PE AV ++ I+ +S +H + +P+ +
Sbjct: 156 SSSSCSEIYCGTYPESEPEVKAVADFLRRNIKHIKAYIS--MHSYSQKIVFPYSYSRSRS 213
Query: 155 PNSSEYLELNNKRGQPETDAVKEWTSKIQF 184
+ E + + A++ I++
Sbjct: 214 KDHEELSLV----AREAVFAMENIHRNIRY 239
>2bo9_A Carboxypeptidase A4; metallocarboxypeptidase, X-RAY endogenous
protein inhibitor, metalloprotease carboxypeptidase,
hydrolase; HET: NAG; 1.6A {Homo sapiens} SCOP: c.56.5.1
PDB: 4a94_A 2pcu_A*
Length = 308
Score = 77.4 bits (191), Expect = 2e-16
Identities = 38/193 (19%), Positives = 65/193 (33%), Gaps = 49/193 (25%)
Query: 6 RDLWVMVVSASPYEHMIGKPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLL 65
R ++V+ S +P V A +H E + + + + V +Y DP I +L
Sbjct: 43 RPMYVLKFSTGKGV---RRPAVWLNAGIHSREWISQATAIWTARKIVSDYQRDPAITSIL 99
Query: 66 DNTRIHILPSMNPDGYEVARE--------------GQCEGGQGRYNARGFDLNRNFPDYF 111
+ I +LP NPDGY + C G D NRN+ F
Sbjct: 100 EKMDIFLLPVANPDGYVYTQTQNRLWRKTRSRNPGSSC---------IGADPNRNWNASF 150
Query: 112 KQNNK---------RGQ-----PETDAVKEW---TSKIQFVLSGGLHGGALVASYPF--- 151
G E +V ++ + + LH + + YP+
Sbjct: 151 AGKGASDNPCSEVYHGPHANSEVEVKSVVDFIQKHGNFKGFID--LHSYSQLLMYPYGYS 208
Query: 152 -DNTPNSSEYLEL 163
P++ E ++
Sbjct: 209 VKKAPDAEELDKV 221
>1m4l_A Carboxypeptidase A; metalloproteinase, metalloexoproteinase,
hydrolase; 1.25A {Bos taurus} SCOP: c.56.5.1 PDB: 1cpx_A
1arl_A 1f57_A 2rfh_A* 3i1u_A* 1arm_A 1ell_P 1elm_P
1ee3_P 1zlh_A 2abz_A 3hlp_A 3huv_A 1yme_A* 3fvl_A*
3fx6_A* 2ctc_A* 1hdq_A 2ctb_A* 3kgq_A* ...
Length = 307
Score = 75.9 bits (187), Expect = 7e-16
Identities = 32/187 (17%), Positives = 65/187 (34%), Gaps = 32/187 (17%)
Query: 6 RDLWVMVVSASPYEHMIGKPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLL 65
R ++V+ S +P + +H E + + + + F ++Y DP +L
Sbjct: 45 RPIYVLKFSTGGSN----RPAIWIDLGIHSREWITQATGVWFAKKFTEDYGQDPSFTAIL 100
Query: 66 DNTRIHILPSMNPDGYEVAREGQCE-----GGQGRYNARGFDLNRNFPDYFKQNNK---- 116
D+ I + NPDG+ G D NRN+ F +
Sbjct: 101 DSMDIFLEIVTNPDGFAFTHSQNRLWRKTRSVTSSSLCVGVDANRNWDAGFGKAGASSSP 160
Query: 117 -----RGQ-----PETDAVKEW---TSKIQFVLSGGLHGGALVASYPF----DNTPNSSE 159
G+ E ++ ++ + LS +H + + YP+ + P+ +E
Sbjct: 161 CSETYHGKYANSEVEVKSIVDFVKDHGNFKAFLS--IHSYSQLLLYPYGYTTQSIPDKTE 218
Query: 160 YLELNNK 166
++
Sbjct: 219 LNQVAKS 225
>1aye_A PCPA2, procarboxypeptidase A2; serine protease, zymogen, hydrolase;
1.80A {Homo sapiens} SCOP: c.56.5.1 d.58.3.1 PDB: 1o6x_A
Length = 401
Score = 76.3 bits (188), Expect = 7e-16
Identities = 40/189 (21%), Positives = 63/189 (33%), Gaps = 43/189 (22%)
Query: 6 RDLWVMVVSASPYEHMIGKPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLL 65
R + V+ S KP + A +H E V + L V +Y DP I +L
Sbjct: 138 RPMNVLKFSTGG-----DKPAIWLDAGIHAREWVTQATALWTANKIVSDYGKDPSITSIL 192
Query: 66 DNTRIHILPSMNPDGYEVA----------REGQCEGGQGRYNARGFDLNRNFPDYFKQNN 115
D I +LP NPDGY + R G D NRN+ F
Sbjct: 193 DALDIFLLPVTNPDGYVFSQTKNRMWRKTRSKVSGSLC-----VGVDPNRNWDAGFGGPG 247
Query: 116 K---------RGQ-----PETDAVKEW---TSKIQFVLSGGLHGGALVASYPF----DNT 154
G E ++ ++ K++ + LH + + +P+
Sbjct: 248 ASSNPCSDSYHGPSANSEVEVKSIVDFIKSHGKVKAFII--LHSYSQLLMFPYGYKCTKL 305
Query: 155 PNSSEYLEL 163
+ E E+
Sbjct: 306 DDFDELSEV 314
>1z5r_A Procarboxypeptidase B; exopeptidase, hydrolase; 1.40A {Sus scrofa}
SCOP: c.56.5.1 PDB: 1zg7_A* 1zg8_A* 1zg9_A* 2jew_A*
2piy_A* 2piz_A* 2pj0_A* 2pj1_A* 2pj2_A* 2pj3_A* 2pj4_A*
2pj5_A* 2pj6_A* 2pj7_A* 2pj8_A* 2pj9_A* 2pja_A* 2pjb_A*
2pjc_A* 1zli_A ...
Length = 306
Score = 73.6 bits (181), Expect = 3e-15
Identities = 33/185 (17%), Positives = 62/185 (33%), Gaps = 33/185 (17%)
Query: 6 RDLWVMVVSASPYEHMIGKPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLL 65
+++++ V KP + H E + ++ V Y + ++ L
Sbjct: 42 NNIYLLKVGKPGPN----KPAIFMDCGFHAREWISHAFCQWFVREAVLTYGYESHMTEFL 97
Query: 66 DNTRIHILPSMNPDGYEVAREGQCE-----GGQGRYNARGFDLNRNFPDYFKQNNK---- 116
+ ++LP +N DGY G D NRNF +
Sbjct: 98 NKLDFYVLPVLNIDGYIYTWTKNRMWRKTRSTNAGTTCIGTDPNRNFDAGWCTTGASTDP 157
Query: 117 -----RG-----QPETDAVKEW----TSKIQFVLSGGLHGGALVASYPF----DNTPNSS 158
G + ET A+ ++ S I+ L+ +H + + YP+ N++
Sbjct: 158 CDETYCGSAAESEKETKALADFIRNNLSSIKAYLT--IHSYSQMILYPYSYDYKLPENNA 215
Query: 159 EYLEL 163
E L
Sbjct: 216 ELNNL 220
>3l2n_A Peptidase M14, carboxypeptidase A; putative carboxypeptidase A,
structural genomics, joint CENT structural genomics,
JCSG; 2.39A {Shewanella denitrificans}
Length = 395
Score = 74.4 bits (182), Expect = 4e-15
Identities = 41/160 (25%), Positives = 59/160 (36%), Gaps = 21/160 (13%)
Query: 6 RDLWVMVVSASPYEHMIGKPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLL 65
RD+ ++ V + A H E + L+ L+ +DN P K LL
Sbjct: 161 RDMTLVKVGDDDPSKKS----IWITARQHPGETMAEWLVEGLLNQLLDND--CPTSKALL 214
Query: 66 DNTRIHILPSMNPDGYEVAREGQCEGGQGRYNARGFDLNRNFPDYFKQNNKRGQPETDAV 125
D +I+P+MNPDG G R NA G +LNR + + PE V
Sbjct: 215 DKANFYIVPNMNPDGSVR--------GHLRTNAVGANLNREWQTPSLER----SPEVYYV 262
Query: 126 KEWTSKIQFVLSGGLHGGAL---VASYPFDNTPNSSEYLE 162
+ L +HG V + PN S+ L
Sbjct: 263 VNKMHETGVDLFYDVHGDEGLPYVFLAGCEGIPNYSDKLA 302
Score = 35.9 bits (82), Expect = 0.014
Identities = 19/141 (13%), Positives = 33/141 (23%), Gaps = 22/141 (15%)
Query: 169 QPETDAVKEWTSKIQFVLSGGLHGGALVASYPFDNTPNSMFQSYSSAPSLTPDDDVFKHL 228
PE V + L +HG + P P D L
Sbjct: 256 SPEVYYVVNKMHETGVDLFYDVHGD--------EGLPYVFLAGCEGIP---NYSDKLASL 304
Query: 229 ALTYSRNHPTMATGLACKSNTPAFKQ--GITNGAQWYPLTGGMQDFNYVWYGCMEVTLEL 286
+ A + F+ G ++ + C+ TLE+
Sbjct: 305 QQDFVA---------ALSLASADFQTEFGYDKDEPGKANLTVACNWVANTFKCLSNTLEM 355
Query: 287 SCCKFPPASELPKMWEENRLR 307
++ + W R
Sbjct: 356 PFKDNANLADPFQGWSPERSV 376
>3dgv_A TAFI, carboxypeptidase B2; blood coagulation, fibrinolysis, protein
S glycoprotein, hydrolase, metal-binding,
metalloprotease, PR secreted, zymogen; HET: NAG NDG FUL
BMA; 2.50A {Bos taurus} PDB: 3osl_A 3d68_A* 3d66_A*
3d67_A*
Length = 401
Score = 73.3 bits (180), Expect = 8e-15
Identities = 37/203 (18%), Positives = 69/203 (33%), Gaps = 29/203 (14%)
Query: 6 RDLWVMVVSASPYEHMIGKPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLL 65
L+V+ VS K + +H E + L + Y + LL
Sbjct: 134 YPLYVLKVSKKEQR---AKNAMWIDCGIHAREWISPAFCLWFVGSVTYYYGKEKMHTNLL 190
Query: 66 DNTRIHILPSMNPDGYEVAREGQC-----EGGQGRYNARGFDLNRNFPDYFKQNNK---- 116
+ +I+P +N DGY+ + + G DLNRNF
Sbjct: 191 KHMDFYIMPVVNVDGYDYTWKKDRMWRKNRSLHEKNACVGTDLNRNFASKHWCGEGASSS 250
Query: 117 ------RG-----QPETDAVKEW----TSKIQFVLSGGLHGGALVASYPFDNTPNSSEYL 161
G +PE AV ++ I+ +S +H + +P+ + + S+
Sbjct: 251 SCSEIYCGTYPESEPEVKAVADFLRRNIKHIKAYIS--MHSYSQKIVFPYSYSRSRSKDH 308
Query: 162 ELNNKRGQPETDAVKEWTSKIQF 184
E + + A++ I++
Sbjct: 309 EELSLVAREAVFAMENIHRNIRY 331
>1kwm_A Procarboxypeptidase B; hydrolase; HET: CIT; 1.60A {Homo sapiens}
SCOP: c.56.5.1 d.58.3.1 PDB: 3glj_A 1nsa_A 1pba_A
Length = 402
Score = 72.5 bits (178), Expect = 2e-14
Identities = 31/162 (19%), Positives = 55/162 (33%), Gaps = 35/162 (21%)
Query: 6 RDLWVMVVSASPYEHMIGKPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLL 65
R ++++ V + KP + H E + ++ V Y + + LL
Sbjct: 137 RAIYLLKVGKAGQN----KPAIFMDCGFHAREWISPAFCQWFVREAVRTYGREIQVTELL 192
Query: 66 DNTRIHILPSMNPDGYEVAREGQCEGGQGRYNAR--------GFDLNRNFPDYFKQNNK- 116
+ ++LP +N DGY R G D NRNF + +
Sbjct: 193 NKLDFYVLPVLNIDGYIYTWTKSR---FWRKTRSTHTGSSCIGTDPNRNFDAGWCEIGAS 249
Query: 117 --------RG-----QPETDAVKEW----TSKIQFVLSGGLH 141
G + ET A+ ++ S I+ L+ +H
Sbjct: 250 RNPCDETYCGPAAESEKETKALADFIRNKLSSIKAYLT--IH 289
>1jqg_A Carboxypeptidase A; Pro-protein, hydrolase; 2.50A {Helicoverpa
armigera} SCOP: c.56.5.1 d.58.3.1
Length = 433
Score = 72.6 bits (178), Expect = 2e-14
Identities = 40/184 (21%), Positives = 66/184 (35%), Gaps = 31/184 (16%)
Query: 6 RDLWVMVVSASPYEHMIGKPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLL 65
R + + +S + ++ KP V + +H E V L Y + D L+
Sbjct: 154 RSIKYLRISTTNFQDA-SKPVVMMQSLLHCREWVTLPATL----YAIHKLVIDVTESDLI 208
Query: 66 DNTRIHILPSMNPDGYEVAREGQC-------EGGQGRYNARGFDLNRNFPDYFKQNNK-- 116
+N ILP NPDGY G G G DLNRNF + +
Sbjct: 209 NNIDWIILPVANPDGYVHTFGGDRYWRKNRATGYMAGNLCMGVDLNRNFGMNWGTASSSS 268
Query: 117 ------RGQ-----PETDAVKEW----TSKIQFVLSGGLHGGALVASYPFDNTPNSSEYL 161
G+ PE+ +++ +++ L +H + Y + N S L
Sbjct: 269 VCSDTFHGRSAFSEPESSVIRDIIAEHRNRMALYLD--IHSFGSMILYGYGNGVLPSNAL 326
Query: 162 ELNN 165
+L+
Sbjct: 327 QLHL 330
>2boa_A Carboxypeptidase A4; metalloprocarboxypeptidase, X-RAY zymogen,
metalloprotease, exopropeptidase, hydrolase; HET: NAG;
2.20A {Homo sapiens} SCOP: c.56.5.1 d.58.3.1
Length = 404
Score = 70.6 bits (173), Expect = 6e-14
Identities = 37/196 (18%), Positives = 66/196 (33%), Gaps = 49/196 (25%)
Query: 6 RDLWVMVVSASPYEHMIGKPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLL 65
R ++V+ S + +P V A +H E + + + + V +Y DP I +L
Sbjct: 139 RPMYVLKFSTGK---GVRRPAVWLNAGIHSREWISQATAIWTARKIVSDYQRDPAITSIL 195
Query: 66 DNTRIHILPSMNPDGYEVARE--------------GQCEGGQGRYNARGFDLNRNFPDYF 111
+ I +LP NPDGY + C G D NRN+ F
Sbjct: 196 EKMDIFLLPVANPDGYVYTQTQNRLWRKTRSRNPGSSC---------IGADPNRNWNASF 246
Query: 112 KQNNKRG--------------QPETDAVKEW---TSKIQFVLSGGLHGGALVASYPF--- 151
+ E +V ++ + + LH + + YP+
Sbjct: 247 AGKGASDNPCSEVYHGPHANSEVEVKSVVDFIQKHGNFKGFID--LHSYSQLLMYPYGYS 304
Query: 152 -DNTPNSSEYLELNNK 166
P++ E ++
Sbjct: 305 VKKAPDAEELDKVARL 320
>1pca_A Procarboxypeptidase A PCPA; hydrolase(C-terminal peptidase); HET:
CIT; 2.00A {Sus scrofa} SCOP: d.58.3.1 PDB: 1pyt_A
Length = 403
Score = 70.2 bits (172), Expect = 9e-14
Identities = 30/190 (15%), Positives = 65/190 (34%), Gaps = 38/190 (20%)
Query: 6 RDLWVMVVSASPYEHMIGKPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLL 65
R ++V+ S +P + + +H E + + + + +NY + +L
Sbjct: 140 RPIYVLKFSTGGSN----RPAIWIDSGIHSREWITQASGVWFAKKITENYGQNSSFTAIL 195
Query: 66 DNTRIHILPSMNPDGYEVAREGQCEGGQGRYNAR--------GFDLNRNFPDYFKQNNK- 116
D+ I + NP+G+ + R G D NRN+ F
Sbjct: 196 DSMDIFLEIVTNPNGFAFTHS---DNRLWRKTRSKASGSLCVGSDSNRNWDAGFGGAGAS 252
Query: 117 --------RGQ-----PETDAVKEW---TSKIQFVLSGGLHGGALVASYPF----DNTPN 156
G+ E ++ ++ I+ +S +H + + YP+ + +
Sbjct: 253 SSPCAETYHGKYPNSEVEVKSITDFVKNNGNIKAFIS--IHSYSQLLLYPYGYKTQSPAD 310
Query: 157 SSEYLELNNK 166
SE ++
Sbjct: 311 KSELNQIAKS 320
>2c1c_A Carboxypeptidase B; insect, metalloprotease, insensitive, plant
inhibitors, hydrolase; 2.3A {Helicoverpa zea} SCOP:
c.56.5.1
Length = 312
Score = 69.7 bits (171), Expect = 9e-14
Identities = 34/188 (18%), Positives = 63/188 (33%), Gaps = 37/188 (19%)
Query: 6 RDLWVMVVSASPYEHMIGKPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLL 65
R + + +S + +E KP + +H E + + I V++ + LL
Sbjct: 39 RPIKYIKISTTNFEDE-NKPVIFIDGGIHAREWISPPSVTWAIHKLVEDVTEN----DLL 93
Query: 66 DNTRIHILPSMNPDGYEVAREG--------QCEGGQGRYNARGFDLNRNFPDYFKQNNK- 116
+ +LP +NPDGY+ RG D NRNF +
Sbjct: 94 EKFDWILLPVVNPDGYKYTFTNERFWRKTRSTNNNPLSQICRGADGNRNFDFVWNSIGTS 153
Query: 117 --------RGQ-----PETDAVKEW----TSKIQFVLSGGLHGGALVASYPF----DNTP 155
G ET V++ +++ L+ +H + YP+ +
Sbjct: 154 NSPCSDIYAGTSAFSEVETRVVRDILHEHLARMALYLT--MHSFGSMILYPWGHDGSLSQ 211
Query: 156 NSSEYLEL 163
N+ +
Sbjct: 212 NALGLHTV 219
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.5 bits (117), Expect = 8e-07
Identities = 43/248 (17%), Positives = 75/248 (30%), Gaps = 64/248 (25%)
Query: 7 DLWVMVVSASPYEHMIGKPDVK-------YVANMHGNEAVGRELMLHLIQYFVDNYNTDP 59
D+ ++S +H+I D + E V Q FV+
Sbjct: 40 DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV---------QKFVEEVLRIN 90
Query: 60 YIKWLLDNTRIH---ILPSMNPDGYEVAREGQCEGGQGRYNARGFDLNRNFPDYFKQNNK 116
Y K+L+ I PSM Y R+ R ++ N+ F Y N
Sbjct: 91 Y-KFLMS--PIKTEQRQPSMMTRMYIEQRD------------RLYNDNQVFAKY---NVS 132
Query: 117 RGQPETDAVKEWTSKIQ---FVLSGGLHG--GA----LVA----SYPF-DNTPNSSEYLE 162
R QP +++ +++ VL + G G+ + SY +L
Sbjct: 133 RLQPYL-KLRQALLELRPAKNVL---IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188
Query: 163 LNNKRGQPETDAVKEWTSKIQFVLSGGLHGGALVASYPFDNT------PNSMFQSYSSAP 216
L N + V E K+ + + + +S + +S
Sbjct: 189 LKNCN---SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 217 SLTPDDDV 224
L +V
Sbjct: 246 CLLVLLNV 253
Score = 37.9 bits (87), Expect = 0.004
Identities = 35/242 (14%), Positives = 68/242 (28%), Gaps = 76/242 (31%)
Query: 47 LIQYFVDNYNTDPYIKWLLDNTRIHILPSMNPDGYEVAREGQCEGGQGRYNARGFDLNRN 106
++ F D + + K + D + IL D + G R F +
Sbjct: 21 ILSVFEDAFVDNFDCKDVQDMPK-SILSKEEID--HIIMSKDAV--SGTL--RLFWTLLS 73
Query: 107 FPDYFKQNNKRGQPETDAVKEWTSKIQFVLSGGLHGGALVASYPF----------DNTPN 156
KQ V+ +FV L +Y F +
Sbjct: 74 -----KQEE--------MVQ------KFV------EEVLRINYKFLMSPIKTEQRQPSMM 108
Query: 157 SSEYLELNNK--------------RGQPETDAVKEWTSKIQ---FVLSGGLHG--GA--- 194
+ Y+E ++ R QP +++ +++ VL + G G+
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYL-KLRQALLELRPAKNVL---IDGVLGSGKT 164
Query: 195 -LVA----SYPF-DNTPNSMFQSYSSAPSLTPDDDVFKHLALTYSRNHPTMATGLACKSN 248
+ SY +F + + + + V + L + P + SN
Sbjct: 165 WVALDVCLSYKVQCKMDFKIF--WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 249 TP 250
Sbjct: 223 IK 224
Score = 27.9 bits (61), Expect = 6.1
Identities = 15/74 (20%), Positives = 24/74 (32%), Gaps = 18/74 (24%)
Query: 18 YEHMIGKPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLLDNTRIHILPSMN 77
Y+ I D KY E +++ I F+ + D RI + M
Sbjct: 530 YKPYICDNDPKY------------ERLVNAILDFLPKIEENLICSKYTDLLRIAL---MA 574
Query: 78 PDGY---EVAREGQ 88
D E ++ Q
Sbjct: 575 EDEAIFEEAHKQVQ 588
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics,
joint center for structural genomics, JCSG, prote
structure initiative; HET: MSE; 1.80A {Shewanella
amazonensis} PDB: 3lwu_A*
Length = 368
Score = 39.5 bits (91), Expect = 9e-04
Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 14/101 (13%)
Query: 25 PDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLLDNTRIHILPSMNPDGYEVA 84
P V AN+HG E G ++ L++ ++ I ++P NP G
Sbjct: 34 PSVYIQANVHGAEVQGNAVIYQLMK----------LLEHYELLGDISLVPLANPLGINQK 83
Query: 85 REGQCEGGQGRYN-ARGFDLNRNFPDYFKQNNKRGQPETDA 124
GR++ G + NR + D+ Q +
Sbjct: 84 SGEF---TLGRFDPITGVNWNREYLDHGFNIEVWYQEHSHL 121
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 0.001
Identities = 63/355 (17%), Positives = 99/355 (27%), Gaps = 156/355 (43%)
Query: 29 YVANMHGNEAVGR--ELMLHLIQYFVDNYNTDPYIKWLLDNTRIH----ILPSMNPDG-- 80
YV+++ VG+ +++ + F + Y L+ IH L N
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEFENCY---------LEGNDIHALAAKLLQENDTTLV 117
Query: 81 --------Y--------------------EVAREGQCE-----GGQGRYNARGFDLNRNF 107
Y EG + GGQG N
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG-----------NT 166
Query: 108 PDYFKQNNKRGQPETDAVKEWTSKIQFVLSGGLHGGALVASYPFDNTPNSSEYLE----L 163
DYF++ Q V + LS L+ + D ++ L L
Sbjct: 167 DDYFEELRDLYQTYHVLVGDLIKFSAETLSE------LIRT-TLDAEKVFTQGLNILEWL 219
Query: 164 NNKRGQPETDAVKEWTSKIQFVLSG--------------GL--------------HGGAL 195
N P+ D + + I L G G H L
Sbjct: 220 ENPSNTPDKDYLL--SIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL 277
Query: 196 VA-----------SYPFDNTPNS---MF----QSYSSAP--SLTPDDDVFKHLALTYSRN 235
V S+ F + + +F + Y + P SL P L S
Sbjct: 278 VTAVAIAETDSWESF-FVSVRKAITVLFFIGVRCYEAYPNTSLPPS-------ILEDSLE 329
Query: 236 H----PT-MATGLAC-------------KSNT--PAFKQ---GITNGAQWYPLTG 267
+ P+ M L+ K+N+ PA KQ + NGA+ ++G
Sbjct: 330 NNEGVPSPM---LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSG 381
Score = 28.1 bits (62), Expect = 5.6
Identities = 32/187 (17%), Positives = 49/187 (26%), Gaps = 71/187 (37%)
Query: 133 QFVLSG---GLHGGALVASY--------------PFD-------------NTPNSSEYLE 162
V+SG L+G L + PF +P S L
Sbjct: 376 NLVVSGPPQSLYG--LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLV 433
Query: 163 LNNKRGQPETDAVKEWTSKIQFVLSGGLHGGALVASYP-FDNTPNSMFQSYSSAPSLTPD 221
P +D + + K + + P +D S + S S++
Sbjct: 434 -------PASDLINKDLVKNNVS----FNAKDI--QIPVYDTFDGSDLRVLSG--SISER 478
Query: 222 --DDVFKH-----LALTYSRNH-----PTMATGLACKSNTPAFKQG-----ITNGAQWYP 264
D + + + H P A+GL T K G I G
Sbjct: 479 IVDCIIRLPVKWETTTQFKATHILDFGPGGASGLG--VLTHRNKDGTGVRVIVAGT---- 532
Query: 265 LTGGMQD 271
L D
Sbjct: 533 LDINPDD 539
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics,
PSI-2, protein structure initiative; 2.10A {Rhodobacter
sphaeroides 2}
Length = 354
Score = 37.5 bits (86), Expect = 0.004
Identities = 28/188 (14%), Positives = 63/188 (33%), Gaps = 29/188 (15%)
Query: 25 PDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLLDNTRIHILPSMNPDGYEVA 84
P V +HG+E G+ + L + ++ R+ +LP++N +
Sbjct: 54 PTVLLTGGVHGDEYEGQIAISDLAR----------RLRPEEVQGRVIMLPAVNMPAIQS- 102
Query: 85 REGQCEGGQGRYN-ARGFDLNRNFPDYFKQNNKRGQPETDAVKEWTSKI-QFVLSGGLHG 142
R + G D+NR FP + + + A + + +S +H
Sbjct: 103 --------DTRLSPVDGRDINRCFPG----DPRGTFSQMLAHFLDSVILPMADISVDMHT 150
Query: 143 GALVASYPFDNTPNSSEYLELNNKRGQPETDAVKEWTSKIQFVLSGGLHGGALVASYPFD 202
+ +D+TP+++ + + A + + + V G G +
Sbjct: 151 A----GHSYDSTPSTNMHYLADPALRARTLAAAEAFGAPHNVVFGGVDEGSTFTSCVERR 206
Query: 203 NTPNSMFQ 210
+ +
Sbjct: 207 GIVSLGTE 214
>2gu2_A ASPA protein; aspartoacylase family, aminoacylase-2, ACY-2,
ACY2_RAT, STRU genomics, PSI, protein structure
initiative; HET: MSE; 1.80A {Rattus norvegicus} SCOP:
c.56.5.7 PDB: 2q4z_A 2i3c_A 2q51_A 2o4h_A* 2o53_A
Length = 312
Score = 36.0 bits (82), Expect = 0.012
Identities = 23/155 (14%), Positives = 40/155 (25%), Gaps = 25/155 (16%)
Query: 25 PDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLLDNTRIHILPSM-NPDGYEV 83
+ HGNE G L+ H ++ + + + P + NP E
Sbjct: 11 KKIAIFGGTHGNELTGVFLVTHWLKNGA-----------EVHRAGLEVKPFITNPRAVEK 59
Query: 84 AREGQCEGGQGRYNARGFDLNRNFPDYFKQNNKRGQPETDAVKEWTSKIQFVLSGGLHGG 143
RY DLNR F + + F
Sbjct: 60 CT---------RYIDC--DLNRVFDLENLSKEMSEDLPYEVRRAQEINHLFGPKNSDDAY 108
Query: 144 ALVASYPFDNTPNSSEYLELNNKRGQPETDAVKEW 178
+V + NT ++ + G + +
Sbjct: 109 DVV--FDLHNTTSNMGCTLILGDSGNDFLIQMFHY 141
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural
genomics, joint center for structural genomics, J
protein structure initiative, PSI-2; HET: MSE; 2.00A
{Ruegeria SP}
Length = 331
Score = 35.2 bits (80), Expect = 0.022
Identities = 14/85 (16%), Positives = 21/85 (24%), Gaps = 18/85 (21%)
Query: 25 PDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLLDNTRIHILPSMNPDGYEVA 84
HG+E G + L + R+ I+P N +
Sbjct: 50 KTALLTGANHGDEYEGPVALQELAA----------TTRAEDVTGRLIIVPYFNYPAFRA- 98
Query: 85 REGQCEGGQGRYNARGFDLNRNFPD 109
+LNR FP
Sbjct: 99 -------SARTSPIDRGNLNRAFPG 116
>2qj8_A MLR6093 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-2,
hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Length = 332
Score = 33.3 bits (75), Expect = 0.090
Identities = 27/153 (17%), Positives = 48/153 (31%), Gaps = 28/153 (18%)
Query: 25 PDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLLDNTRIHILPSMNPDGYEVA 84
P + HGNE G L L++ ++ RI I+P +NP +
Sbjct: 46 PSLLITGGNHGNELQGPILARRLVK----------WLPEAQRCGRIIIVPEINPLAVQA- 94
Query: 85 REGQCEGGQGRYNARGFDLNRNFPDYFKQNNKRGQPETDAVKEWTSKIQFVLSGGLHGGA 144
G +LNR FP + + + + VL LH
Sbjct: 95 -------WTRNTPIDGKNLNRVFPGRSDGSV-SERIADAISRLLLPVVDTVLD--LHSFG 144
Query: 145 -------LVASYPFDNTPNSSEYLELNNKRGQP 170
+ S+P + ++ + ++ P
Sbjct: 145 PTWDCAPSIISHPIADIDQMTKTVSISKAFKLP 177
>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics,
PSI, protein structure initiative; 2.33A {Vibrio
parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A
Length = 350
Score = 33.0 bits (75), Expect = 0.098
Identities = 14/104 (13%), Positives = 29/104 (27%), Gaps = 20/104 (19%)
Query: 12 VVSASPYEHMIGKPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLLDNTRIH 71
V+ P ++ +HG+E EL+ +I+
Sbjct: 41 VLEVIPENPTQETKNIIISCGIHGDETAPMELVDSIIKDIESG---------FQKVDARC 91
Query: 72 ILPSMNPDGYEVAREGQCEGGQGRYNARGFDLNRNFPDYFKQNN 115
+ +P+ R+ +LNR F + +
Sbjct: 92 LFIIAHPESTLAHT---------RFLEE--NLNRLFDEKEHEPT 124
>3nh4_A Aspartoacylase-2; mercapturates, hydrolase; 2.00A {Mus musculus}
PDB: 3nh5_A 3nfz_A 3nh8_A*
Length = 327
Score = 32.1 bits (72), Expect = 0.18
Identities = 20/94 (21%), Positives = 26/94 (27%), Gaps = 23/94 (24%)
Query: 25 PDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLLDNTRIHILPSM-NPDGYEV 83
V HGNE G L + +Q L +P + NP
Sbjct: 21 LRVAVTGGTHGNEMCGVYLARYWLQN-----------PGELQRPSFSAMPVLANPAATAA 69
Query: 84 AREGQCEGGQGRYNARGFDLNRNFPDYFKQNNKR 117
RY R DLNR+ F +
Sbjct: 70 CC---------RYLDR--DLNRSCTLTFLGSTAT 92
>1yw6_A Succinylglutamate desuccinylase; alpha-beta protein., structural
genomics, PSI, protein structure initiative; 3.10A
{Escherichia coli} SCOP: c.56.5.7
Length = 335
Score = 31.9 bits (72), Expect = 0.26
Identities = 24/146 (16%), Positives = 42/146 (28%), Gaps = 37/146 (25%)
Query: 33 MHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLLDNTRIHILPSMNPDGYEVAREGQCEGG 92
+HGNE E++ L+ + R+ ++ NP + +
Sbjct: 57 IHGNETAPVEMLDALLG--------AISHGEIPLRWRL-LVILGNPPALKQGK------- 100
Query: 93 QGRYNARGFDLNRNFPDYFKQNNKRGQPETDAVKEWTSKIQFVLSGG---------LH-- 141
RY D+NR F + ET +E ++ G LH
Sbjct: 101 --RYCHS--DMNRMFGG--RWQLFAESGETCRARELEQCLEDFYDQGKESVRWHLDLHTA 154
Query: 142 ----GGALVASYPFDNTPNSSEYLEL 163
P + P ++L
Sbjct: 155 IRGSLHPQFGVLPQRDIPWDEKFLTW 180
>1yw4_A Succinylglutamate desuccinylase; alpha-beta protein, structural
genomics, PSI, protein struct initiative; 2.00A
{Chromobacterium violaceum} SCOP: c.56.5.7
Length = 341
Score = 31.5 bits (71), Expect = 0.30
Identities = 19/93 (20%), Positives = 30/93 (32%), Gaps = 20/93 (21%)
Query: 23 GKPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLLDNTRIHILPSMNPDGYE 82
G V +HGNE E++ ++ D L N R+ ++ N D
Sbjct: 45 GADSVLLSCGVHGNETAPIEVVDGMLT--------DIAAGQLALNCRL-LVMFANLDAIR 95
Query: 83 VAREGQCEGGQGRYNARGFDLNRNFPDYFKQNN 115
RY D+NR F ++
Sbjct: 96 QGV---------RYGNY--DMNRLFNGAHARHP 117
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces
cerevisiae}
Length = 1030
Score = 30.6 bits (69), Expect = 0.86
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 6/23 (26%)
Query: 64 LLDNTRIHILPSMNPDGYEVARE 86
LD+TRIH P+ Y +A +
Sbjct: 786 QLDSTRIH------PEDYHLATK 802
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces
cerevisiae}
Length = 1219
Score = 30.2 bits (68), Expect = 1.1
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 6/23 (26%)
Query: 64 LLDNTRIHILPSMNPDGYEVARE 86
LD+TRIH P+ Y +A +
Sbjct: 783 QLDSTRIH------PEDYHLATK 799
>1ffv_B CUTL, molybdoprotein of carbon monoxide dehydrogenase; hydrolase;
HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava}
SCOP: d.41.1.1 d.133.1.1 PDB: 1ffu_B*
Length = 803
Score = 29.3 bits (66), Expect = 1.9
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 11/36 (30%)
Query: 86 EGQCEGG--QG---------RYNARGFDLNRNFPDY 110
EGQ GG +G ++A+G L DY
Sbjct: 690 EGQIHGGLTEGYAVAMGQQMPFDAQGNLLGNTLMDY 725
>1t3q_B Quinoline 2-oxidoreductase large subunit; QOR, molybdenum, MCD;
HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.41.1.1
d.133.1.1
Length = 788
Score = 29.1 bits (66), Expect = 2.3
Identities = 10/36 (27%), Positives = 12/36 (33%), Gaps = 11/36 (30%)
Query: 86 EGQCEGG--QG---------RYNARGFDLNRNFPDY 110
EGQ GG Q Y+ G + DY
Sbjct: 676 EGQIRGGIAQAIGQTLLEEVIYDDFGQLVTTTLMDY 711
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 2.4
Identities = 8/48 (16%), Positives = 15/48 (31%), Gaps = 25/48 (52%)
Query: 171 ETDAVKEWTSKIQFVLSGGLHGGALVASYPFDNTPNSMFQSYSSAPSL 218
E A+K+ + ++ Y +S AP+L
Sbjct: 18 EKQALKKLQASLKL--------------Y----ADDS-------APAL 40
Score = 26.5 bits (57), Expect = 7.9
Identities = 6/44 (13%), Positives = 14/44 (31%), Gaps = 18/44 (40%)
Query: 121 ETDAVKEWTSKIQFVLSGGLHGGALVASYPFDNTPNSSEYLELN 164
E A+K+ + ++ Y +S+ L +
Sbjct: 18 EKQALKKLQASLKL--------------Y----ADDSAPALAIK 43
>1n62_B Carbon monoxide dehydrogenase large chain; CODH, molybdenum,
molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A
{Oligotropha carboxidovorans} SCOP: d.41.1.1 d.133.1.1
PDB: 1n5w_B* 1n61_B* 1n60_B* 1n63_B* 1zxi_B*
Length = 809
Score = 28.7 bits (65), Expect = 2.7
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 11/36 (30%)
Query: 86 EGQCEGG--QG---------RYNARGFDLNRNFPDY 110
EGQ GG + RY+ +G L +F D+
Sbjct: 696 EGQVHGGLTEAFAVAMGQEIRYDEQGNVLGASFMDF 731
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 27.8 bits (61), Expect = 4.5
Identities = 18/71 (25%), Positives = 29/71 (40%)
Query: 22 IGKPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLLDNTRIHILPSMNPDGY 81
KP+ V+ G +V + + N N P I W + R+ + MNP+GY
Sbjct: 113 FAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGY 172
Query: 82 EVAREGQCEGG 92
+R + G
Sbjct: 173 MTSRTVREASG 183
>3ogi_A ESXP, putative ESAT-6-like protein 6; structural genomics, PSI-2,
protein structure initiative; 2.55A {Mycobacterium
tuberculosis}
Length = 101
Score = 26.7 bits (58), Expect = 5.1
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 82 EVAREGQCEGGQGRYNARGF--DLNRNFPDYFKQNNKRGQ 119
+V G GG G + F L RNF ++Q N GQ
Sbjct: 34 DVLAAGDFWGGAGSVACQEFITQLGRNFQVIYEQANAHGQ 73
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta
with complex SAH; HET: SAH; 1.20A {Bacillus cereus}
PDB: 3dul_A*
Length = 223
Score = 26.8 bits (60), Expect = 7.9
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 47 LIQYFVDN-YNTDPYIKWLLDNTRIHILPSM 76
+ QY D D ++ +L LP+
Sbjct: 10 VDQYVSDVLIPKDSTLEEVLQVNAAANLPAH 40
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.65A {Legionella pneumophila
subsp}
Length = 242
Score = 26.9 bits (60), Expect = 9.3
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 47 LIQYFVDN-YNTDPYIKWLLDNTRIHILPSM 76
L +Y +D P + L T L +M
Sbjct: 12 LYKYLLDISLREHPALAALRKETSTMELANM 42
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.434
Gapped
Lambda K H
0.267 0.0505 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,984,388
Number of extensions: 289661
Number of successful extensions: 794
Number of sequences better than 10.0: 1
Number of HSP's gapped: 742
Number of HSP's successfully gapped: 63
Length of query: 315
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 222
Effective length of database: 4,105,140
Effective search space: 911341080
Effective search space used: 911341080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.3 bits)