RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7350
(315 letters)
>d1uwya2 c.56.5.1 (A:1-296) Carboxypeptidase M, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 296
Score = 215 bits (548), Expect = 4e-69
Identities = 140/300 (46%), Positives = 171/300 (57%), Gaps = 53/300 (17%)
Query: 6 RDLWVMVVSASPYEHMIGKPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLL 65
R+LWV+VV P EH IG P+ KYVANMHG+E VGREL+LHLI Y V + DP I L+
Sbjct: 38 RNLWVLVVGRFPKEHRIGIPEFKYVANMHGDETVGRELLLHLIDYLVTSDGKDPEITNLI 97
Query: 66 DNTRIHILPSMNPDGYEVAREGQCEGGQGRYNARGFDLNRNFPDYFKQNNKRGQPETDAV 125
++TRIHI+PSMNPDG+E ++ C GR N +DLNRNFPD F+ NN QPET AV
Sbjct: 98 NSTRIHIMPSMNPDGFEAVKKPDCYYSIGRENYNQYDLNRNFPDAFEYNNVSRQPETVAV 157
Query: 126 KEWTSKIQFVLSGGLHGGALVASYPFDNTPNSSEYLELNNKRGQPETDAVKEWTSKIQFV 185
+W FVLS LHGGALVASYPFDN ++ L
Sbjct: 158 MKWLKTETFVLSANLHGGALVASYPFDNGVQATGALY----------------------- 194
Query: 186 LSGGLHGGALVASYPFDNTPNSMFQSYSSAPSLTPDDDVFKHLALTYSRNHPTMATGLAC 245
+ SLTPDDDVF++LA TY+ +P M G C
Sbjct: 195 -----------------------------SRSLTPDDDVFQYLAHTYASRNPNMKKGDEC 225
Query: 246 KSNTPAFKQGITNGAQWYPLTGGMQDFNYVWYGCMEVTLELSCCKFPPASELPKMWEENR 305
K+ F G+TNG WYPL GGMQD+NY+W C E+TLELSCCK+P +LP W N+
Sbjct: 226 KNKM-NFPNGVTNGYSWYPLQGGMQDYNYIWAQCFEITLELSCCKYPREEKLPSFWNNNK 284
>d1h8la2 c.56.5.1 (A:4-304) Carboxypeptidase D, catalytic domain
{Crested duck (Lophonetta specularioides) [TaxId: 8836]}
Length = 301
Score = 188 bits (479), Expect = 9e-59
Identities = 134/302 (44%), Positives = 167/302 (55%), Gaps = 57/302 (18%)
Query: 6 RDLWVMVVSASPYEHMIGKPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLL 65
R+L+VM +S +P H G+P+ KY+ NMHGNE VGREL+L+LI+Y N+ TDP + L+
Sbjct: 43 RELYVMEISDNPGIHEAGEPEFKYIGNMHGNEVVGRELLLNLIEYLCKNFGTDPEVTDLV 102
Query: 66 DNTRIHILPSMNPDGYEVAREGQCEGGQGRYNARGFDLNRNFPDYFKQNNKRGQPETDAV 125
+TRIHI+PSMNPDGYE ++EG G GR N+ +DLNRNFPD F Q QPET AV
Sbjct: 103 QSTRIHIMPSMNPDGYEKSQEGDRGGTVGRNNSNNYDLNRNFPDQFFQVTDPPQPETLAV 162
Query: 126 KEWTSKIQFVLSGGLHGGALVASYPFDNTPNSSEYLELNNKRGQPETDAVKEWTSKIQFV 185
W FVLS LHGG+LV +YPFD+
Sbjct: 163 MSWLKTYPFVLSANLHGGSLVVNYPFDDDEQG---------------------------- 194
Query: 186 LSGGLHGGALVASYPFDNTPNSMFQSYSSAPSLTPDDDVFKHLALTYSRNHPTMATGLAC 245
YS +P DD VF+ LAL+YS+ + M G C
Sbjct: 195 -----------------------IAIYSKSP----DDAVFQQLALSYSKENKKMYQGSPC 227
Query: 246 KSNTPA--FKQGITNGAQWYPLTGGMQDFNYVWYGCMEVTLELSCCKFPPASELPKMWEE 303
K P F GITNGAQWY + GGMQD+NY+ C EVT+EL C K+P A ELPK WE+
Sbjct: 228 KDLYPTEYFPHGITNGAQWYNVPGGMQDWNYLNTNCFEVTIELGCVKYPKAEELPKYWEQ 287
Query: 304 NR 305
NR
Sbjct: 288 NR 289
>d1m4la_ c.56.5.1 (A:) Carboxypeptidase A {Cow (Bos taurus) [TaxId:
9913]}
Length = 307
Score = 129 bits (324), Expect = 8e-36
Identities = 51/310 (16%), Positives = 91/310 (29%), Gaps = 70/310 (22%)
Query: 6 RDLWVMVVSASPYEHMIGKPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLL 65
R ++V+ S +P + +H E + + + + F ++Y DP +L
Sbjct: 45 RPIYVLKFSTGGSN----RPAIWIDLGIHSREWITQATGVWFAKKFTEDYGQDPSFTAIL 100
Query: 66 DNTRIHILPSMNPDGYEVAREGQCEGGQGRY-----NARGFDLNRNFPDYFKQNNKRGQP 120
D+ I + NPDG+ + R G D NRN+ F + P
Sbjct: 101 DSMDIFLEIVTNPDGFAFTHSQNRLWRKTRSVTSSSLCVGVDANRNWDAGFGKAGASSSP 160
Query: 121 ETDAVKEWTSKIQFVLSGGLHGGALVASYPFDNTPNSSEYLELNNKRGQPETDAVKEW-T 179
SE + E ++ ++
Sbjct: 161 ------------------------------------CSETYHGKYANSEVEVKSIVDFVK 184
Query: 180 SKIQFVLSGGLHGGALVASYPFDNTPNSMFQSYSSAPSLTPDDDVFKHLALTYSRNHPTM 239
F +H + + YP+ T S PD +A + ++
Sbjct: 185 DHGNFKAFLSIHSYSQLLLYPYGYTTQS-----------IPDKTELNQVAKSAVAALKSL 233
Query: 240 ATGLACKSNTPAFKQGITNGAQWYPLTGGMQDFNYVWYGCMEVTLELSCCK----FPPAS 295
++K G Y +GG D++Y T EL PAS
Sbjct: 234 --------YGTSYKYGSI-ITTIYQASGGSIDWSYNQGIKYSFTFELRDTGRYGFLLPAS 284
Query: 296 ELPKMWEENR 305
++ +E
Sbjct: 285 QIIPTAQETW 294
>d1obra_ c.56.5.2 (A:) Carboxypeptidase T {Thermoactinomyces
vulgaris [TaxId: 2026]}
Length = 323
Score = 125 bits (314), Expect = 3e-34
Identities = 62/318 (19%), Positives = 105/318 (33%), Gaps = 75/318 (23%)
Query: 6 RDLWVMVVSASPYEHMIGKPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLL 65
R+LW + +S + +P+V Y A H E + E+ L+ + F NYN D I L+
Sbjct: 42 RELWAVKISDNVGTDE-NEPEVLYTALHHAREHLTVEMALYTLDLFTQNYNLDSRITNLV 100
Query: 66 DNTRIHILPSMNPDGYEVAREGQCEGGQ-------GRYNARGFDLNRNFPDYFKQNNKRG 118
+N I+I+ ++NPDG E + G DLNRN+ +
Sbjct: 101 NNREIYIVFNINPDGGEYDISSGSYKSWRKNRQPNSGSSYVGTDLNRNYGYKWGCCGGS- 159
Query: 119 QPETDAVKEWTSKIQFVLSGGLHGGALVASYPFDNTPNSSEYLELNNKRGQPETDAVKEW 178
+P+S Y + PET A++++
Sbjct: 160 ---------------------------------SGSPSSETY-RGRSAFSAPETAAMRDF 185
Query: 179 ------TSKIQFVLSGGLHGGALVASYPFDNTPNSMFQSYSSAPSLTPDDDVFKHLALTY 232
K Q H + + YP+ T + D +VFK +A T
Sbjct: 186 INSRVVGGKQQIKTLITFHTYSELILYPYGYTYTD-----VPSDMTQDDFNVFKTMANTM 240
Query: 233 SRNHPTMATGLACKSNTPAFKQGITNGAQWYPLTGGMQDFNYVWYGCMEVTLELSCCK-- 290
++ + + Y G M D+ Y + T E+
Sbjct: 241 AQTNGYT----------------PQQASDLYITDGDMTDWAYGQHKIFAFTFEMYPTSYN 284
Query: 291 ---FPPASELPKMWEENR 305
+PP + + N+
Sbjct: 285 PGFYPPDEVIGRETSRNK 302
>d2bo9a1 c.56.5.1 (A:4-307) Carboxypeptidase A {Human (Homo sapiens)
[TaxId: 9606]}
Length = 305
Score = 124 bits (312), Expect = 3e-34
Identities = 57/309 (18%), Positives = 95/309 (30%), Gaps = 69/309 (22%)
Query: 6 RDLWVMVVSASPYEHMIGKPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLL 65
R ++V+ S +P V A +H E + + + + V +Y DP I +L
Sbjct: 42 RPMYVLKFSTGKGVR---RPAVWLNAGIHSREWISQATAIWTARKIVSDYQRDPAITSIL 98
Query: 66 DNTRIHILPSMNPDGYEVAREGQCEGGQGR-----YNARGFDLNRNFPDYFKQNNKRGQP 120
+ I +LP NPDGY + + R + G D NRN+ F P
Sbjct: 99 EKMDIFLLPVANPDGYVYTQTQNRLWRKTRSRNPGSSCIGADPNRNWNASFAGKGASDNP 158
Query: 121 ETDAVKEWTSKIQFVLSGGLHGGALVASYPFDNTPNSSEYLELNNKRGQPETDAVKEWTS 180
SE + + E +V ++
Sbjct: 159 ------------------------------------CSEVYHGPHANSEVEVKSVVDFIQ 182
Query: 181 KI-QFVLSGGLHGGALVASYPFDNTPNSMFQSYSSAPSLTPDDDVFKHLALTYSRNHPTM 239
K F LH + + YP+ + PD + +A ++ ++
Sbjct: 183 KHGNFKGFIDLHSYSQLLMYPYGYSVKKA-----------PDAEELDKVARLAAKALASV 231
Query: 240 ATGLACKSNTPAFKQGITNGAQWYPLTGGMQDFNYVWYGCMEVTLELS---CCKF-PPAS 295
+ Q YP +G D+ Y T EL F PA+
Sbjct: 232 ---------SGTEYQVGPTCTTVYPASGSSIDWAYDNGIKFAFTFELRDTGTYGFLLPAN 282
Query: 296 ELPKMWEEN 304
++ EE
Sbjct: 283 QIIPTAEET 291
>d1ayea1 c.56.5.1 (A:1-309) Carboxypeptidase A {Human (Homo sapiens)
[TaxId: 9606]}
Length = 307
Score = 122 bits (306), Expect = 3e-33
Identities = 57/309 (18%), Positives = 93/309 (30%), Gaps = 71/309 (22%)
Query: 6 RDLWVMVVSASPYEHMIGKPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLL 65
R + V+ S KP + A +H E V + L V +Y DP I +L
Sbjct: 44 RPMNVLKFSTGG-----DKPAIWLDAGIHAREWVTQATALWTANKIVSDYGKDPSITSIL 98
Query: 66 DNTRIHILPSMNPDGYEVAREGQCEGGQGRYN-----ARGFDLNRNFPDYFKQNNKRGQP 120
D I +LP NPDGY ++ + R G D NRN+ F P
Sbjct: 99 DALDIFLLPVTNPDGYVFSQTKNRMWRKTRSKVSGSLCVGVDPNRNWDAGFGGPGASSNP 158
Query: 121 ETDAVKEWTSKIQFVLSGGLHGGALVASYPFDNTPNSSEYLELNNKRGQPETDAVKEWT- 179
S + +SE E ++ ++
Sbjct: 159 --------------------------CSDSYHGPSANSEV----------EVKSIVDFIK 182
Query: 180 SKIQFVLSGGLHGGALVASYPFDNTPNSMFQSYSSAPSLTPDDDVFKHLALTYSRNHPTM 239
S + LH + + +P+ D D +A ++
Sbjct: 183 SHGKVKAFIILHSYSQLLMFPYGYKCT-----------KLDDFDELSEVAQKAAQ----- 226
Query: 240 ATGLACKSNTPAFKQGITNGAQWYPLTGGMQDFNYVWYGCMEVTLEL---SCCKF-PPAS 295
+ +S + + Y +GG D++Y + EL F PA
Sbjct: 227 ----SLRSLHGTKYKVGPICSVIYQASGGSIDWSYDYGIKYSFAFELRDTGRYGFLLPAR 282
Query: 296 ELPKMWEEN 304
++ EE
Sbjct: 283 QILPTAEET 291
>d1z5ra1 c.56.5.1 (A:6-308) Carboxypeptidase B {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 304
Score = 104 bits (260), Expect = 1e-26
Identities = 48/310 (15%), Positives = 85/310 (27%), Gaps = 71/310 (22%)
Query: 6 RDLWVMVVSASPYEHMIGKPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLL 65
+++++ V KP + H E + ++ V Y + ++ L
Sbjct: 40 NNIYLLKVGKPGP----NKPAIFMDCGFHAREWISHAFCQWFVREAVLTYGYESHMTEFL 95
Query: 66 DNTRIHILPSMNPDGYEVAREGQCEGGQGRYN-----ARGFDLNRNFPDYFKQNNKRGQP 120
+ ++LP +N DGY + R G D NRNF + P
Sbjct: 96 NKLDFYVLPVLNIDGYIYTWTKNRMWRKTRSTNAGTTCIGTDPNRNFDAGWCTTGASTDP 155
Query: 121 ETDAVKEWTSKIQFVLSGGLHGGALVASYPFDNTPNSSEYLELNNKRGQPETDAVKEW-- 178
E + + ET A+ ++
Sbjct: 156 ------------------------------------CDETYCGSAAESEKETKALADFIR 179
Query: 179 TSKIQFVLSGGLHGGALVASYPFDNTPNSMFQSYSSAPSLTPDDDVFKHLALTYSRNHPT 238
+ +H + + YP+ L ++ +LA + T
Sbjct: 180 NNLSSIKAYLTIHSYSQMILYPYSYDYK-----------LPENNAELNNLAKAAVKELAT 228
Query: 239 MATGLACKSNTPAFKQGITNGAQWYPLTGGMQDFNYVWYGCMEVTLEL---SCCKF-PPA 294
+ + G YP GG D+ Y T EL F P
Sbjct: 229 L--------YGTKYTYG-PGATTIYPAAGGSDDWAYDQGIKYSFTFELRDKGRYGFILPE 279
Query: 295 SELPKMWEEN 304
S++ EE
Sbjct: 280 SQIQATCEET 289
>d2c1ca1 c.56.5.1 (A:7-309) Carboxypeptidase B {Corn earworm
(Helicoverpa zea) [TaxId: 7113]}
Length = 312
Score = 102 bits (255), Expect = 7e-26
Identities = 47/314 (14%), Positives = 92/314 (29%), Gaps = 73/314 (23%)
Query: 6 RDLWVMVVSASPYEHMIGKPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLL 65
R + + +S + +E KP + +H E + + I V++ + LL
Sbjct: 39 RPIKYIKISTTNFEDE-NKPVIFIDGGIHAREWISPPSVTWAIHKLVEDVTEN----DLL 93
Query: 66 DNTRIHILPSMNPDGYEVAREGQCE--------GGQGRYNARGFDLNRNFPDYFKQNNKR 117
+ +LP +NPDGY+ + RG D NRNF +
Sbjct: 94 EKFDWILLPVVNPDGYKYTFTNERFWRKTRSTNNNPLSQICRGADGNRNFDFVWNSIGTS 153
Query: 118 GQPETDAVKEWTSKIQFVLSGGLHGGALVASYPFDNTPNSSEYLELNNKRGQPETDAVKE 177
P S+ + + ET V++
Sbjct: 154 NSP------------------------------------CSDIYAGTSAFSEVETRVVRD 177
Query: 178 WTS--KIQFVLSGGLHGGALVASYPFDNTPNSMFQSYSSAPSLTPDDDVFKHLALTYSRN 235
+ L +H + YP+ + + L+ + + + +
Sbjct: 178 ILHEHLARMALYLTMHSFGSMILYPWGHDGS-----------LSQNALGLHTVGVAMASV 226
Query: 236 HPTMATGLACKSNTPAFKQGITNGAQWYPLTGGMQDFNYVWYGCMEVTLELSCCK----- 290
+ A N P + G + Y + G +D+ + + T EL
Sbjct: 227 IQSNA-----LPNFPPYTVGNSALVIGYYIAGSSEDYAHSIGVPLSYTYELPGLSSGWDG 281
Query: 291 -FPPASELPKMWEE 303
P + ++ E
Sbjct: 282 FHLPPQYIEQVCRE 295
>d1jqga1 c.56.5.1 (A:1-310) Carboxypeptidase A {Cotton bollworm
(Helicoverpa armigera) [TaxId: 29058]}
Length = 317
Score = 94.9 bits (235), Expect = 5e-23
Identities = 49/316 (15%), Positives = 89/316 (28%), Gaps = 79/316 (25%)
Query: 6 RDLWVMVVSASPYEHMIGKPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLL 65
R + + +S + ++ KP V + +H E V L+ I V + L+
Sbjct: 45 RSIKYLRISTTNFQDA-SKPVVMMQSLLHCREWVTLPATLYAIHKLVIDV----TESDLI 99
Query: 66 DNTRIHILPSMNPDGYEVAREGQCE-------GGQGRYNARGFDLNRNFPDYFKQNNKRG 118
+N ILP NPDGY G G G DLNRNF + +
Sbjct: 100 NNIDWIILPVANPDGYVHTFGGDRYWRKNRATGYMAGNLCMGVDLNRNFGMNWGTAS--- 156
Query: 119 QPETDAVKEWTSKIQFVLSGGLHGGALVASYPFDNTPNSSEYLELNNKRGQPETDAVKEW 178
++ S + + +PE+ +++
Sbjct: 157 ---------------------------------SSSVCSDTFHG-RSAFSEPESSVIRDI 182
Query: 179 TSKI--QFVLSGGLHGGALVASYPFDNTPNSMFQSYSSAPSLTPDDDVFKHLALTYSRNH 236
++ + L +H + Y + N L + + +
Sbjct: 183 IAEHRNRMALYLDIHSFGSMILYGYGNGV------------LPSNALQLHLIGV------ 224
Query: 237 PTMATGLACKSNTPAFKQGITNGAQW-YPLTGGMQDFNYVWYGCMEVTLELSCCK----- 290
MA + + + N Y +GG D+ T EL +
Sbjct: 225 -QMAQAIDRVKWSSNKDYIVGNIFHVLYAASGGASDYAMQAAAPFSYTYELPAYRNSVWF 283
Query: 291 ---FPPASELPKMWEE 303
+ + E
Sbjct: 284 DGFLVDPDFIEQAGFE 299
>d2g9da1 c.56.5.7 (A:3-342) Succinylglutamate desuccinylase AstE
{Vibrio cholerae [TaxId: 666]}
Length = 340
Score = 39.6 bits (92), Expect = 3e-04
Identities = 20/163 (12%), Positives = 39/163 (23%), Gaps = 24/163 (14%)
Query: 12 VVSASPYEHMIGKPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLLDNTRIH 71
V+ P + ++ +HG+E EL+ I D + R
Sbjct: 39 VLEVIPAQTDAATKNMVISCGIHGDETAPMELLDKWID--------DIVSGFQPVAERC- 89
Query: 72 ILPSMNPDGYEVAREGQCEGGQGRYNARGFDLNRNFPDYFKQNNKRGQPETDAVKEWTSK 131
+ +P R+ + +LNR F D E
Sbjct: 90 LFIMAHPQATVRHV---------RFIEQ--NLNRLFDD----KPHTPSTELAIADNLKVL 134
Query: 132 IQFVLSGGLHGGALVASYPFDNTPNSSEYLELNNKRGQPETDA 174
++ + + ++ K P
Sbjct: 135 LRQFFANTDEHSRWHLDLHCAIRGSKHYSFAVSPKARHPVRSR 177
>d1yw6a1 c.56.5.7 (A:1-322) Succinylglutamate desuccinylase AstE
{Escherichia coli [TaxId: 562]}
Length = 322
Score = 36.6 bits (84), Expect = 0.003
Identities = 23/156 (14%), Positives = 40/156 (25%), Gaps = 37/156 (23%)
Query: 23 GKPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLLDNTRIHILPSMNPDGYE 82
+ + A +HGNE E++ L+ + ++ NP +
Sbjct: 42 PQGALVISAGIHGNETAPVEMLDALLGAISHG---------EIPLRWRLLVILGNPPALK 92
Query: 83 VAREGQCEGGQGRYNARGFDLNRNFPDYFKQNNKRGQPETDAVKE----WTSKIQFVLSG 138
+ RY D+NR F + ET +E
Sbjct: 93 QGK---------RYCHS--DMNRMFGG--RWQLFAESGETCRARELEQCLEDFYDQGKES 139
Query: 139 G-----LHGGA------LVASYPFDNTPNSSEYLEL 163
LH P + P ++L
Sbjct: 140 VRWHLDLHTAIRGSLHPQFGVLPQRDIPWDEKFLTW 175
>d2gu2a1 c.56.5.7 (A:4-310) Aspartoacylase AspA {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 307
Score = 36.1 bits (83), Expect = 0.004
Identities = 17/91 (18%), Positives = 23/91 (25%), Gaps = 21/91 (23%)
Query: 25 PDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLLDNTRIHILPSMNPDGYEVA 84
+ HGNE G L+ H ++ + + NP E
Sbjct: 8 KKIAIFGGTHGNELTGVFLVTHWLKNGAEV---------HRAGLEV-KPFITNPRAVEKC 57
Query: 85 REGQCEGGQGRYNARGFDLNRNFPDYFKQNN 115
RY DLNR F
Sbjct: 58 T---------RYIDC--DLNRVFDLENLSKE 77
>d1yw4a1 c.56.5.7 (A:2-332) Succinylglutamate desuccinylase AstE
{Chromobacterium violaceum [TaxId: 536]}
Length = 331
Score = 35.4 bits (81), Expect = 0.006
Identities = 19/93 (20%), Positives = 30/93 (32%), Gaps = 20/93 (21%)
Query: 23 GKPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLLDNTRIHILPSMNPDGYE 82
G V +HGNE E++ ++ D L N R+ ++ N D
Sbjct: 44 GADSVLLSCGVHGNETAPIEVVDGMLT--------DIAAGQLALNCRL-LVMFANLDAIR 94
Query: 83 VAREGQCEGGQGRYNARGFDLNRNFPDYFKQNN 115
RY D+NR F ++
Sbjct: 95 QGV---------RYGNY--DMNRLFNGAHARHP 116
>d2bcoa1 c.56.5.7 (A:4-342) Succinylglutamate desuccinylase AstE
{Vibrio parahaemolyticus [TaxId: 670]}
Length = 339
Score = 33.4 bits (76), Expect = 0.028
Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 20/84 (23%)
Query: 25 PDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLLDNTRIHILPSMNPDGYEVA 84
++ +HG+E EL+ +I+ D + + R + +P+
Sbjct: 51 KNIIISCGIHGDETAPMELVDSIIK--------DIESGFQKVDARC-LFIIAHPESTLAH 101
Query: 85 REGQCEGGQGRYNARGFDLNRNFP 108
R+ +LNR F
Sbjct: 102 T---------RFLEE--NLNRLFD 114
>d1t3qb2 d.133.1.1 (B:166-786) Quinoline 2-oxidoreductase large
subunit QorL {Pseudomonas putida [TaxId: 303]}
Length = 621
Score = 30.3 bits (67), Expect = 0.29
Identities = 18/114 (15%), Positives = 31/114 (27%), Gaps = 16/114 (14%)
Query: 9 WVMVVSASPYEHMIGKPDVKYVANMHGNEAVGRELMLHLIQYFVDNYNTDPYIKWLLDNT 68
+ VV A+ + P ++ + + + Y + D
Sbjct: 437 FAEVVGAAYFADATHPPGFDATLEATATYDPSDLVLANGGHAAIVEIDASTYATRVTDFF 496
Query: 69 RIHIL-PSMNPDGYEVAREGQCEGG--QG---------RYNARGFDLNRNFPDY 110
+ +NP E GQ GG Q Y+ G + DY
Sbjct: 497 AVEDCGTMINPMIVE----GQIRGGIAQAIGQTLLEEVIYDDFGQLVTTTLMDY 546
>d3bzka2 a.60.2.6 (A:564-636) Transcriptional accessory factor Tex
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 73
Score = 27.0 bits (60), Expect = 0.72
Identities = 5/22 (22%), Positives = 10/22 (45%), Gaps = 6/22 (27%)
Query: 65 LDNTRIHILPSMNPDGYEVARE 86
LD + +H P+ Y + +
Sbjct: 4 LDASAVH------PETYPLVQR 19
>d1n62b2 d.133.1.1 (B:147-809) Carbon monoxide (CO) dehydrogenase
molybdoprotein {Oligotropha carboxidovorans, formerly
Pseudomonas carboxydovorans [TaxId: 40137]}
Length = 663
Score = 28.8 bits (63), Expect = 0.99
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 15/47 (31%)
Query: 75 SMNPDGYEVAREGQCEGG--QG---------RYNARGFDLNRNFPDY 110
+NP E GQ GG + RY+ +G L +F D+
Sbjct: 543 RINPMIIE----GQVHGGLTEAFAVAMGQEIRYDEQGNVLGASFMDF 585
>d1v97a5 d.133.1.1 (A:695-1332) Xanthine oxidase, C-terminal domain
{Cow (Bos taurus) [TaxId: 9913]}
Length = 638
Score = 28.4 bits (62), Expect = 1.4
Identities = 13/47 (27%), Positives = 15/47 (31%), Gaps = 15/47 (31%)
Query: 75 SMNPDGYEVAREGQCEGG--QG---------RYNARGFDLNRNFPDY 110
S+NP GQ EG QG Y+ G R Y
Sbjct: 491 SLNPAIDI----GQVEGAFVQGLGLFTLEELHYSPEGSLHTRGPSTY 533
>d1ffvb2 d.133.1.1 (B:147-803) Carbon monoxide (CO) dehydrogenase
molybdoprotein {Hydrogenophaga pseudoflava [TaxId:
47421]}
Length = 657
Score = 28.4 bits (62), Expect = 1.5
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 15/47 (31%)
Query: 75 SMNPDGYEVAREGQCEGG--QG---------RYNARGFDLNRNFPDY 110
+NP E GQ GG +G ++A+G L DY
Sbjct: 537 RINPMIIE----GQIHGGLTEGYAVAMGQQMPFDAQGNLLGNTLMDY 579
>d2erfa1 b.29.1.4 (A:10-215) Thrombospondin 1 N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 206
Score = 25.8 bits (56), Expect = 6.3
Identities = 17/125 (13%), Positives = 30/125 (24%), Gaps = 20/125 (16%)
Query: 180 SKIQFVLSGGLHGGALVASYPFDNTPNSMFQSYSSAPSLTPDDDVFKHLALTYSRNHPTM 239
S F + G L S Q S +K + L + +
Sbjct: 86 SGQVFSVVSNGKAGTLDLSLTVQGK-----QHVVSVEEALLATGQWKSITLFVQEDRAQL 140
Query: 240 -------ATGLACKSNTPAFKQGITNGAQWY--------PLTGGMQDFNYVWYGCMEVTL 284
F + + + A+ G +Q+ +V+ E L
Sbjct: 141 YIDCEKMENAELDVPIQSVFTRDLASIARLRIAKGGVNDNFQGVLQNVRFVFGTTPEDIL 200
Query: 285 ELSCC 289
C
Sbjct: 201 RNKGC 205
>d2ae6a1 d.108.1.1 (A:1-161) Putative acetyltransferase EF0244
{Enterococcus faecalis [TaxId: 1351]}
Length = 161
Score = 25.4 bits (54), Expect = 7.0
Identities = 11/72 (15%), Positives = 18/72 (25%)
Query: 46 HLIQYFVDNYNTDPYIKWLLDNTRIHILPSMNPDGYEVAREGQCEGGQGRYNARGFDLNR 105
L+ V D I L + + + + Y GF
Sbjct: 80 WLLSIGVSPDFQDQGIGGSLLSYIKDMAEISGIHKLSLRVMATNQEAIRFYEKHGFVQEA 139
Query: 106 NFPDYFKQNNKR 117
+F + F N
Sbjct: 140 HFKEEFYINGHY 151
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.434
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,243,480
Number of extensions: 57731
Number of successful extensions: 191
Number of sequences better than 10.0: 1
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 28
Length of query: 315
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 230
Effective length of database: 1,240,546
Effective search space: 285325580
Effective search space used: 285325580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.3 bits)