BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7351
(253 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EH5|A Chain A, Crystal Structure Of Palmitoyl Protein Thioesterase 1
Complexed With Palmitate
pdb|1EI9|A Chain A, Crystal Structure Of Palmitoyl Protein Thioesterase 1
pdb|1EXW|A Chain A, Crystal Structure Of Palmitoyl Protein Thioesterase 1
Complexed With Hexadecylsulfonyl Fluoride
Length = 279
Score = 303 bits (777), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 135/244 (55%), Positives = 176/244 (72%)
Query: 1 MWHGMGDSCCNPFSLGHFSKFLEEQMPTVYIKSLRIGNNSIEDIENGFFMNINDQVTLAC 60
+WHGMGDSCCNP S+G K +E+++P +++ SL IG ED+EN FF+N+N QVT C
Sbjct: 10 IWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEIGKTLREDVENSFFLNVNSQVTTVC 69
Query: 61 KLIGEDPELKMGYNALGVSQGGLFLRAVAQRCPSPPMLNLISLGGPQQGVYGLPHCLYPT 120
+++ +DP+L+ GYNA+G SQGG FLRAVAQRCPSPPM+NLIS+GG QGV+GLP C +
Sbjct: 70 QILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGGQHQGVFGLPRCPGES 129
Query: 121 HEICDYLRRVLNVGAYWSWIQARFVQAEYWHDPMNEASYQTGSMFLADINNELQINTNYS 180
ICD++R+ LN GAY IQ R VQAEYWHDP+ E Y+ S+FLADIN E +N +Y
Sbjct: 130 SHICDFIRKTLNAGAYNKAIQERLVQAEYWHDPIREDIYRNHSIFLADINQERGVNESYK 189
Query: 181 DNLNRLRKLVLVKFTEDTMVQPKDSEWFGFYAPGQASTVLPLQKTKLYIEVNIGSPESQE 240
NL L+K V+VKF DT+V P DSEWFGFY GQA +PLQ++ LY + +G +
Sbjct: 190 KNLMALKKFVMVKFLNDTIVDPVDSEWFGFYRSGQAKETIPLQESTLYTQDRLGLKAMDK 249
Query: 241 VGQV 244
GQ+
Sbjct: 250 AGQL 253
>pdb|3GRO|A Chain A, Human Palmitoyl-Protein Thioesterase 1
pdb|3GRO|B Chain B, Human Palmitoyl-Protein Thioesterase 1
Length = 298
Score = 299 bits (766), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 135/244 (55%), Positives = 170/244 (69%)
Query: 1 MWHGMGDSCCNPFSLGHFSKFLEEQMPTVYIKSLRIGNNSIEDIENGFFMNINDQVTLAC 60
+WHG GDSCCNP S G K +E+++P +Y+ SL IG ED+EN FF+N+N QVT C
Sbjct: 17 IWHGXGDSCCNPLSXGAIKKXVEKKIPGIYVLSLEIGKTLXEDVENSFFLNVNSQVTTVC 76
Query: 61 KLIGEDPELKMGYNALGVSQGGLFLRAVAQRCPSPPMLNLISLGGPQQGVYGLPHCLYPT 120
+ + +DP+L+ GYNA G SQGG FLRAVAQRCPSPP +NLIS+GG QGV+GLP C +
Sbjct: 77 QALAKDPKLQQGYNAXGFSQGGQFLRAVAQRCPSPPXINLISVGGQHQGVFGLPRCPGES 136
Query: 121 HEICDYLRRVLNVGAYWSWIQARFVQAEYWHDPMNEASYQTGSMFLADINNELQINTNYS 180
ICD++R+ LN GAY +Q R VQAEYWHDP+ E Y+ S+FLADIN E IN +Y
Sbjct: 137 SHICDFIRKTLNAGAYSKVVQERLVQAEYWHDPIKEDVYRNHSIFLADINQERGINESYK 196
Query: 181 DNLNRLRKLVLVKFTEDTMVQPKDSEWFGFYAPGQASTVLPLQKTKLYIEVNIGSPESQE 240
NL L+K V VKF D++V P DSEWFGFY GQA +PLQ+T LY + +G E
Sbjct: 197 KNLXALKKFVXVKFLNDSIVDPVDSEWFGFYRSGQAKETIPLQETSLYTQDRLGLKEXDN 256
Query: 241 VGQV 244
GQ+
Sbjct: 257 AGQL 260
>pdb|1PJA|A Chain A, The Crystal Structure Of Palmitoyl Protein Thioesterase-2
Reveals The Basis For Divergent Substrate Specificities
Of The Two Lysosomal Thioesterases (Ppt1 And Ppt2)
Length = 302
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 106/239 (44%), Gaps = 25/239 (10%)
Query: 3 HGMGDSCCNPFSLGHFSKFLEEQMPTVYIKSLRI--GNNSIEDIENGFFMNINDQVTLAC 60
HG+ DS +S H +++ E P + L + G S+ + + +
Sbjct: 43 HGLFDSS---YSFRHLLEYINETHPGTVVTVLDLFDGRESLRPL----WEQVQGFREAVV 95
Query: 61 KLIGEDPELKMGYNALGVSQGGLFLRAVAQRCPSPPMLNLISLGGPQQGVYG---LPHCL 117
++ + P+ G + + SQGGL RA+ + + ISL PQ G YG L
Sbjct: 96 PIMAKAPQ---GVHLICYSQGGLVCRALLSVMDDHNVDSFISLSSPQMGQYGDTDYLKWL 152
Query: 118 YPTHEICDYLRRVLNVGAYWSWIQARFVQAEYWHDPMNEASYQTGSMFLADINNELQI-- 175
+PT +R L Y W Q F YWHDP ++ Y S FLA IN E
Sbjct: 153 FPTS-----MRSNLYRICYSPWGQ-EFSICNYWHDPHHDDLYLNASSFLALINGERDHPN 206
Query: 176 NTNYSDNLNRLRKLVLVKFTEDTMVQPKDSEWFGFYAPGQASTVLPLQKTKLYIEVNIG 234
T + N R+ LVL+ +D ++ P S +FGFY + TVL +++ +Y+ + G
Sbjct: 207 ATVWRKNFLRVGHLVLIGGPDDGVITPWQSSFFGFYDANE--TVLEMEEQLVYLRDSFG 263
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
pdb|3HD8|C Chain C, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
Length = 389
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 10/123 (8%)
Query: 52 INDQVTLAC---KLIGEDPELKMGYNALGVSQGGLFLR---AVAQRCPSPPMLNLISLGG 105
+N +V AC KL+ P G G++ GL L A AQ+ P+ +L L + GG
Sbjct: 118 VNVRVLAACAPSKLLASLPRGSTGVA--GLAGSGLALPSQVASAQKVPNKFLLCLPT-GG 174
Query: 106 PQQGVYGLPHCLYPT-HEICDYLRRVLNVGAYWSWIQARFVQAEYWHDPMNEASYQTGSM 164
P ++G +P + DY V G+ +I AR ++ E P++E + TG +
Sbjct: 175 PGVAIFGGGPLPWPQFTQSMDYTPLVAKGGSPAHYISARSIKVENTRVPISERALATGGV 234
Query: 165 FLA 167
L+
Sbjct: 235 MLS 237
>pdb|1KXL|A Chain A, Solution Structure Of The Cdc13 Dna-Binding Domain In A
Complex With Single-Stranded Telomeric Dna (Dna
Structure Not Modeled)
pdb|1S40|A Chain A, Solution Structure Of The Cdc13 Dna-Binding Domain
Complexed With A Single-Stranded Telomeric Dna 11-Mer
Length = 199
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 23 EEQMPTVYIKSLRIGNNSIEDIENGFFMNINDQVTLACKLIGEDPELKMGYNALGVSQGG 82
+ Q T K +I NN + D++NG N++ Q + CK+ + ++KM YN
Sbjct: 86 KNQFETFDSKLRKIFNNGLRDLQNGRDENLS-QYGIVCKM---NIKVKM-YNGK------ 134
Query: 83 LFLRAVAQRCPSPPMLNLISLGGPQQ 108
L A+ + C P + S+ P Q
Sbjct: 135 --LNAIVRECEPVPHSQISSIASPSQ 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,902,307
Number of Sequences: 62578
Number of extensions: 323183
Number of successful extensions: 629
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 621
Number of HSP's gapped (non-prelim): 10
length of query: 253
length of database: 14,973,337
effective HSP length: 97
effective length of query: 156
effective length of database: 8,903,271
effective search space: 1388910276
effective search space used: 1388910276
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)