RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7351
(253 letters)
>gnl|CDD|202109 pfam02089, Palm_thioest, Palmitoyl protein thioesterase.
Length = 279
Score = 303 bits (777), Expect = e-104
Identities = 135/244 (55%), Positives = 176/244 (72%)
Query: 1 MWHGMGDSCCNPFSLGHFSKFLEEQMPTVYIKSLRIGNNSIEDIENGFFMNINDQVTLAC 60
+WHGMGDSCCNP S+G K +E+++P +++ SL IG ED+EN FF+N+N QVT C
Sbjct: 10 IWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEIGKTLREDVENSFFLNVNSQVTTVC 69
Query: 61 KLIGEDPELKMGYNALGVSQGGLFLRAVAQRCPSPPMLNLISLGGPQQGVYGLPHCLYPT 120
+++ +DP+L+ GYNA+G SQGG FLRAVAQRCPSPPM+NLIS+GG QGV+GLP C +
Sbjct: 70 QILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGGQHQGVFGLPRCPGES 129
Query: 121 HEICDYLRRVLNVGAYWSWIQARFVQAEYWHDPMNEASYQTGSMFLADINNELQINTNYS 180
ICD++R+ LN GAY IQ R VQAEYWHDP+ E Y+ S+FLADIN E +N +Y
Sbjct: 130 SHICDFIRKTLNAGAYNKAIQERLVQAEYWHDPIREDIYRNHSIFLADINQERGVNESYK 189
Query: 181 DNLNRLRKLVLVKFTEDTMVQPKDSEWFGFYAPGQASTVLPLQKTKLYIEVNIGSPESQE 240
NL L+K V+VKF DT+V P DSEWFGFY GQA +PLQ++ LY + +G +
Sbjct: 190 KNLMALKKFVMVKFLNDTIVDPVDSEWFGFYRSGQAKETIPLQESTLYTQDRLGLKAMDK 249
Query: 241 VGQV 244
GQ+
Sbjct: 250 AGQL 253
>gnl|CDD|178240 PLN02633, PLN02633, palmitoyl protein thioesterase family protein.
Length = 314
Score = 149 bits (378), Expect = 1e-43
Identities = 87/248 (35%), Positives = 127/248 (51%), Gaps = 10/248 (4%)
Query: 1 MWHGMGDSCCNPFSLGHFSKFLEEQMPTVYIKSLRIGNNSIEDIENGFFMNINDQVTLAC 60
M HG+G C + + +F++ L + L IGN + + + M + Q +AC
Sbjct: 30 MLHGIGTQCSDA-TNANFTQLLTNLSGSPGF-CLEIGNG----VGDSWLMPLTQQAEIAC 83
Query: 61 KLIGEDPELKMGYNALGVSQGGLFLRAVAQRCPS-PPMLNLISLGGPQQGVYGLPHCLYP 119
+ + + EL GYN +G SQG L R + + C PP+ N ISL GP G+ LP C
Sbjct: 84 EKVKQMKELSQGYNIVGRSQGNLVARGLIEFCDGGPPVYNYISLAGPHAGISSLPRC-GT 142
Query: 120 THEICDYLRRVLNVGAYWSWIQARFVQAEYWHDPMNEASYQTGSMFLADINNEL--QINT 177
+ IC ++ Y +IQ + Y+ P + Y GS +L +NNE+ Q N
Sbjct: 143 SGLICKIANELIKGDVYSDFIQDHLAPSGYYKIPKDVTEYLKGSKYLPKLNNEIPDQRNQ 202
Query: 178 NYSDNLNRLRKLVLVKFTEDTMVQPKDSEWFGFYAPGQASTVLPLQKTKLYIEVNIGSPE 237
Y D L+ LVLVKF DT++ PKDS WFGFY G+ +L +Q+TKLY E IG
Sbjct: 203 TYKDRFTSLQNLVLVKFQNDTVIVPKDSSWFGFYPDGEFEHLLSVQQTKLYTEDWIGLKT 262
Query: 238 SQEVGQVE 245
+ G+V+
Sbjct: 263 LDDAGKVK 270
>gnl|CDD|215326 PLN02606, PLN02606, palmitoyl-protein thioesterase.
Length = 306
Score = 134 bits (339), Expect = 5e-38
Identities = 80/248 (32%), Positives = 124/248 (50%), Gaps = 12/248 (4%)
Query: 1 MWHGMGDSCCNPFSLGHFSKFLEEQMPTVYIKSLRIGNNSIEDIENGFFMNINDQVTLAC 60
++HG G C N + + ++FL + IGN +++ FM + Q ++AC
Sbjct: 31 LFHGFGGECSNG-KVSNLTQFLI-NHSGYPGTCVEIGNG----VQDSLFMPLRQQASIAC 84
Query: 61 KLIGEDPELKMGYNALGVSQGGLFLRAVAQRCP-SPPMLNLISLGGPQQGVYGLPHCLYP 119
+ I + EL GYN + SQG L R + + C +PP++N +SLGGP GV +P
Sbjct: 85 EKIKQMKELSEGYNIVAESQGNLVARGLIEFCDNAPPVINYVSLGGPHAGVAAIPKGC-- 142
Query: 120 THEICDYLRRVLNVGAYWSWIQARFVQAEYWHDPMNEASYQTGSMFLADINNEL--QINT 177
C+ L+ V V Y + Q + Y PM +Y S +L +NNE + N
Sbjct: 143 NSTFCELLKAVFAV-IYTDFAQDHTAPSGYVKKPMEIKNYLEHSKYLPKLNNERPGERNP 201
Query: 178 NYSDNLNRLRKLVLVKFTEDTMVQPKDSEWFGFYAPGQASTVLPLQKTKLYIEVNIGSPE 237
+ D L LVLV F DT++ P+++ WFG+Y G ++ +L Q TKLY E IG
Sbjct: 202 TFKDRFTSLHNLVLVMFQGDTVLIPRETSWFGYYPDGASTPLLSPQSTKLYTEDWIGLKT 261
Query: 238 SQEVGQVE 245
+ G+V+
Sbjct: 262 LDDAGKVK 269
>gnl|CDD|241355 cd13201, FERM_C_MyoXV, Myosin XV (MyoXV/Myo15) FERM domain C-lobe.
MyoXV, a MyTH-FERM myosin, are actin-based motor
proteins essential for a variety of biological processes
in actin cytoskeleton function. Specifically MyoXV
functions in the actin organization in hair cells of the
organ of Corti. Mutations in Human MyoXVa causes
non-syndromic deafness, DFNB3 and the mouse shaker-2
mutation. MyoXV consists of a N-terminal motor/head
region, a neck made of 1-3 IQ motifs, and a tail that
consists of either a myosin tail homology 4 (MyTH4)
domains, followed by an SH3 domain, and a MyTH-FERM
domains as in rat Myo15 or two MyTH-FERM domains
separated by a SH3 domain as in human Myo15A. The
MyTH-FERM domains are thought to mediate dimerization
and binding to other proteins or cargo. The FERM domain
has a cloverleaf tripart structure (FERM_N, FERM_M,
FERM_C/N, alpha-, and C-lobe/A-lobe, B-lobe, C-lobe/F1,
F2, F3). The C-lobe/F3 within the FERM domain is part of
the PH domain family. The FERM domain is found in the
cytoskeletal-associated proteins such as ezrin, moesin,
radixin, 4.1R, and merlin. These proteins provide a link
between the membrane and cytoskeleton and are involved
in signal transduction pathways. The FERM domain is also
found in protein tyrosine phosphatases (PTPs) , the
tyrosine kinases FAK and JAK, in addition to other
proteins involved in signaling. This domain is
structurally similar to the PH and PTB domains and
consequently is capable of binding to both peptides and
phospholipids at different sites.
Length = 131
Score = 28.3 bits (64), Expect = 2.1
Identities = 7/32 (21%), Positives = 18/32 (56%)
Query: 218 TVLPLQKTKLYIEVNIGSPESQEVGQVESDSA 249
+ PL+ ++++ G+ Q+ ++E+D A
Sbjct: 82 KLRPLEDGTPFLDIKYGNLMQQKTTRLETDQA 113
>gnl|CDD|233238 TIGR01029, rpsG_bact, ribosomal protein S7, bacterial/organelle.
This model describes the bacterial and organellar
branch of the ribosomal protein S7 family (includes
prokaroytic S7 and eukaryotic S5). The eukaryotic and
archaeal branch is described by model TIGR01028
[Protein synthesis, Ribosomal proteins: synthesis and
modification].
Length = 154
Score = 28.4 bits (64), Expect = 2.2
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 18 FSKFLEEQMPTVYIKSLRIG 37
F + LE P V +KS R+G
Sbjct: 60 FEQALENVKPLVEVKSRRVG 79
>gnl|CDD|201306 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This
catalytic domain is found in a very wide range of
enzymes.
Length = 226
Score = 27.9 bits (62), Expect = 4.8
Identities = 30/153 (19%), Positives = 45/153 (29%), Gaps = 26/153 (16%)
Query: 74 NALGVSQGGLFLRAVAQRCPSPPMLNLISLGGPQQGVYGLPHCLYPTHEICDYL------ 127
N +G S GGL A A + P + L+ +G GL L P + L
Sbjct: 45 NLVGHSMGGLIALAYAAKYPD-RVKALVLVGTVHPA--GLSSPLTPRGNLLGLLLDNFFN 101
Query: 128 RRVLNVGAYWSWIQARFVQAEYWHDPMNEA-------------SYQTGSMFLADINNELQ 174
R +V A Q + P L
Sbjct: 102 RLYDSVEALLGR---AIKQFQALGRPFVSDFLKQFELSSLIRFGETLALDGLLGYALGYD 158
Query: 175 INTNYSDNLNRLRKLVLVKF-TEDTMVQPKDSE 206
+ + S L + L+ + +D +V P SE
Sbjct: 159 LVWDRSAALKDIDVPTLIIWGDDDPLVPPDASE 191
>gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups.
Length = 977
Score = 28.3 bits (63), Expect = 5.0
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 66 DPELKMGYNA---LGVSQGGLFLR---AVAQRCPSPPMLNLISLGGPQQGVYGLPHCLYP 119
D LK+ YNA G + LR ++ S P++ I+ PQ+GV+ + H +Y
Sbjct: 744 DRFLKVQYNANDLQGKAANKAALRKQLGLSSADASQPLVGCITRLVPQKGVHLIRHAIYK 803
Query: 120 THEI 123
T E+
Sbjct: 804 TAEL 807
>gnl|CDD|131065 TIGR02010, IscR, iron-sulfur cluster assembly transcription factor
IscR. This model describes IscR, an iron-sulfur binding
transcription factor of the ISC iron-sulfur cluster
assembly system [Biosynthesis of cofactors, prosthetic
groups, and carriers, Other, Regulatory functions, DNA
interactions].
Length = 135
Score = 27.0 bits (60), Expect = 6.6
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 160 QTGSMFLADINNELQINTNYSDNL-NRLRKLVLVK 193
+TG + LADI+ I+ +Y + L +LRK LVK
Sbjct: 22 ETGPVTLADISERQGISLSYLEQLFAKLRKAGLVK 56
>gnl|CDD|129003 smart00764, Citrate_ly_lig, Citrate lyase ligase C-terminal
domain. Proteins of this family contain the C-terminal
domain of citrate lyase ligase EC:6.2.1.22.
Length = 182
Score = 27.2 bits (61), Expect = 7.6
Identities = 9/16 (56%), Positives = 12/16 (75%), Gaps = 2/16 (12%)
Query: 10 CNPFSLGHFSKFLEEQ 25
NPF+LGH ++L EQ
Sbjct: 8 ANPFTLGH--RYLVEQ 21
>gnl|CDD|116804 pfam08218, Citrate_ly_lig, Citrate lyase ligase C-terminal
domain. This family is composed of the C-terminal
domain of citrate lyase ligase EC:6.2.1.22.
Length = 182
Score = 26.9 bits (60), Expect = 8.8
Identities = 9/16 (56%), Positives = 12/16 (75%), Gaps = 2/16 (12%)
Query: 10 CNPFSLGHFSKFLEEQ 25
NPF+LGH ++L EQ
Sbjct: 8 ANPFTLGH--RYLVEQ 21
>gnl|CDD|173920 cd02169, Citrate_lyase_ligase, Citrate lyase ligase. Citrate lyase
ligase, also known as [Citrate (pro-3S)-lyase] ligase,
is responsible for acetylation of the
(2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A)
prosthetic group of the gamma subunit of citrate lyase,
converting the inactive thiol form of this enzyme to the
active form. The acetylation of 1 molecule of
deacetyl-citrate lyase to enzymatically active citrate
lyase requires 6 molecules of ATP. The
Adenylylyltranferase activity of the enzyme involves the
formation of AMP and and pyrophosphate in the
acetylation reaction.
Length = 297
Score = 26.8 bits (60), Expect = 9.7
Identities = 8/16 (50%), Positives = 12/16 (75%), Gaps = 2/16 (12%)
Query: 10 CNPFSLGHFSKFLEEQ 25
NPF+LGH ++L E+
Sbjct: 123 ANPFTLGH--RYLVEK 136
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.430
Gapped
Lambda K H
0.267 0.0763 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,822,368
Number of extensions: 1190640
Number of successful extensions: 814
Number of sequences better than 10.0: 1
Number of HSP's gapped: 807
Number of HSP's successfully gapped: 13
Length of query: 253
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 158
Effective length of database: 6,723,972
Effective search space: 1062387576
Effective search space used: 1062387576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.1 bits)