RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy7351
         (253 letters)



>1ei9_A Palmitoyl protein thioesterase 1; alpha/beta hydrolase,
           glycoprotein, hydrolase; HET: NDG NAG; 2.25A {Bos
           taurus} SCOP: c.69.1.13 PDB: 1eh5_A* 1exw_A* 3gro_A
          Length = 279

 Score =  284 bits (727), Expect = 6e-97
 Identities = 133/234 (56%), Positives = 172/234 (73%)

Query: 1   MWHGMGDSCCNPFSLGHFSKFLEEQMPTVYIKSLRIGNNSIEDIENGFFMNINDQVTLAC 60
           +WHGMGDSCCNP S+G   K +E+++P +++ SL IG    ED+EN FF+N+N QVT  C
Sbjct: 10  IWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEIGKTLREDVENSFFLNVNSQVTTVC 69

Query: 61  KLIGEDPELKMGYNALGVSQGGLFLRAVAQRCPSPPMLNLISLGGPQQGVYGLPHCLYPT 120
           +++ +DP+L+ GYNA+G SQGG FLRAVAQRCPSPPM+NLIS+GG  QGV+GLP C   +
Sbjct: 70  QILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGGQHQGVFGLPRCPGES 129

Query: 121 HEICDYLRRVLNVGAYWSWIQARFVQAEYWHDPMNEASYQTGSMFLADINNELQINTNYS 180
             ICD++R+ LN GAY   IQ R VQAEYWHDP+ E  Y+  S+FLADIN E  +N +Y 
Sbjct: 130 SHICDFIRKTLNAGAYNKAIQERLVQAEYWHDPIREDIYRNHSIFLADINQERGVNESYK 189

Query: 181 DNLNRLRKLVLVKFTEDTMVQPKDSEWFGFYAPGQASTVLPLQKTKLYIEVNIG 234
            NL  L+K V+VKF  DT+V P DSEWFGFY  GQA   +PLQ++ LY +  +G
Sbjct: 190 KNLMALKKFVMVKFLNDTIVDPVDSEWFGFYRSGQAKETIPLQESTLYTQDRLG 243


>1pja_A Palmitoyl-protein thioesterase 2 precursor; hydrolase,
           glycoprotein, lysosome; HET: NAG; 2.70A {Homo sapiens}
           SCOP: c.69.1.13
          Length = 302

 Score =  175 bits (443), Expect = 8e-54
 Identities = 65/237 (27%), Positives = 101/237 (42%), Gaps = 17/237 (7%)

Query: 1   MWHGMGDSCCNPFSLGHFSKFLEEQMPTVYIKSLRIGNNSIEDIENGFFMNINDQVTLAC 60
           + HG+ DS    +S  H  +++ E  P   +  L + +             + +QV    
Sbjct: 41  VVHGLFDSS---YSFRHLLEYINETHPGTVVTVLDLFDG------RESLRPLWEQVQGFR 91

Query: 61  KLIGE-DPELKMGYNALGVSQGGLFLRAVAQRCPSPPMLNLISLGGPQQGVYGLPHCLYP 119
           + +     +   G + +  SQGGL  RA+        + + ISL  PQ G YG    L  
Sbjct: 92  EAVVPIMAKAPQGVHLICYSQGGLVCRALLSVMDDHNVDSFISLSSPQMGQYGDTDYL-- 149

Query: 120 THEICDYLRRVLNVGAYWSWIQARFVQAEYWHDPMNEASYQTGSMFLADINNELQ--INT 177
                  +R  L    Y  W Q  F    YWHDP ++  Y   S FLA IN E      T
Sbjct: 150 KWLFPTSMRSNLYRICYSPWGQ-EFSICNYWHDPHHDDLYLNASSFLALINGERDHPNAT 208

Query: 178 NYSDNLNRLRKLVLVKFTEDTMVQPKDSEWFGFYAPGQASTVLPLQKTKLYIEVNIG 234
            +  N  R+  LVL+   +D ++ P  S +FGFY   +  TVL +++  +Y+  + G
Sbjct: 209 VWRKNFLRVGHLVLIGGPDDGVITPWQSSFFGFYDANE--TVLEMEEQLVYLRDSFG 263


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 40/227 (17%), Positives = 77/227 (33%), Gaps = 67/227 (29%)

Query: 13  FSLGHFSKFLEEQMPTVYIKSLRIGNNSIEDIENGFFMNINDQVTLACKLIGEDPE---- 68
           F LG+ S  +E      + + L +    + + EN  ++  ND   LA KL+ E+      
Sbjct: 64  F-LGYVSSLVEPSKVGQFDQVLNL---CLTEFENC-YLEGNDIHALAAKLLQENDTTLVK 118

Query: 69  ----LKMGYNALGVSQGGL-------FLRAVAQRCPSPPMLNLISL-GGPQQGVYGLPHC 116
               +K    A  +++            RAV +         L+++ GG  QG       
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSALFRAVGEG-----NAQLVAIFGG--QG------- 164

Query: 117 LYPTHEICDYLRRVLNVGAYWSWIQARFVQAEYWHDPMNEASYQTGSMFLAD-INNELQI 175
                          N   Y+  ++  +    Y    +     +  +  L++ I   L  
Sbjct: 165 ---------------NTDDYFEELRDLY--QTY--HVLVGDLIKFSAETLSELIRTTLDA 205

Query: 176 NTNYSDNLNRLRKLVLVKFTEDTMVQPKDSEWFGFYAPGQASTVLPL 222
              ++  LN      ++++ E+    P D ++     P   S   PL
Sbjct: 206 EKVFTQGLN------ILEWLENPSNTP-DKDYLL-SIP--IS--CPL 240



 Score = 38.1 bits (88), Expect = 0.003
 Identities = 43/252 (17%), Positives = 71/252 (28%), Gaps = 97/252 (38%)

Query: 38  NNSIEDIENGFFM-----------NINDQVTLACKLIGEDPELKMGYNALGVSQGGL--- 83
            +  + I   FF+           ++   +        E     M    L +S   L   
Sbjct: 294 VSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM----LSIS--NLTQE 347

Query: 84  ----FLRAVAQRCPSPPMLNLISL---------GGPQQGVYGLPHCLYPTHEICDYLRRV 130
               ++       P+   +  ISL          GP Q +YGL             LR+ 
Sbjct: 348 QVQDYVNKTNSHLPAGKQVE-ISLVNGAKNLVVSGPPQSLYGL----------NLTLRK- 395

Query: 131 LNVGAYWSWIQAR-------------F--VQAEYWHDP-MNEASYQTGSMFLADINN--- 171
               A     Q+R             F  V + + H   +  AS     +   D+     
Sbjct: 396 --AKAPSGLDQSRIPFSERKLKFSNRFLPVASPF-HSHLLVPAS----DLINKDLVKNNV 448

Query: 172 -----ELQI---NTNYSDNLNRLRKLVLVKFTEDTMVQPKDSEW-------------FGF 210
                ++QI   +T    +L  L   +  +  +  +  P    W             FG 
Sbjct: 449 SFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK--WETTTQFKATHILDFG- 505

Query: 211 YAPGQASTVLPL 222
             PG AS +  L
Sbjct: 506 --PGGASGLGVL 515



 Score = 30.4 bits (68), Expect = 0.78
 Identities = 25/168 (14%), Positives = 49/168 (29%), Gaps = 69/168 (41%)

Query: 63   IGEDPELKMGYNALGVSQGGLF-----LRAVAQR-------CPSPP-------MLNL--- 100
            +GE       Y AL  S   +      +  V  R        P          M+ +   
Sbjct: 1764 LGE-------YAAL-ASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPG 1815

Query: 101  -ISLGGPQQGVYGLPHCLYPTHEICDYLRRVLNVGAYWSWIQARFVQ-AEYWHDPMNEAS 158
             ++    Q+ +            + +       VG    W     V+   Y     N  +
Sbjct: 1816 RVAASFSQEAL----------QYVVE------RVGKRTGW----LVEIVNY-----NVEN 1850

Query: 159  YQT---GSMF-LADINNELQINTNYSDNLNRLRKLVLVKFTEDTMVQP 202
             Q    G +  L  + N L        N  +L+K+ +++  +   ++ 
Sbjct: 1851 QQYVAAGDLRALDTVTNVL--------NFIKLQKIDIIELQKSLSLEE 1890


>1isp_A Lipase; alpha/beta hydrolase fold, hydrolase; 1.30A {Bacillus
           subtilis} SCOP: c.69.1.18 PDB: 1i6w_A 1r4z_A* 1r50_A*
           2qxu_A 2qxt_A 1t4m_A 1t2n_A 3d2a_A 3qzu_A 3d2b_A 3d2c_A
           3qmm_A
          Length = 181

 Score = 37.4 bits (87), Expect = 0.001
 Identities = 16/111 (14%), Positives = 32/111 (28%), Gaps = 16/111 (14%)

Query: 3   HGMGDSCCNPFSLGHFSKFLEEQ---MPTVYIKSLRIGNNSIEDIENGFFMNINDQVTLA 59
           HG+G      F+      +L  Q      +Y         +  +        ++  V   
Sbjct: 10  HGIGG---ASFNFAGIKSYLVSQGWSRDKLYAVDFWDKTGTNYNNGPV----LSRFVQKV 62

Query: 60  CKLIGEDPELKMGYNALGVSQGGLFLRAVAQRCPSPPML-NLISLGGPQQG 109
               G         + +  S GG       +       + N+++LGG  + 
Sbjct: 63  LDETGAKK-----VDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGANRL 108


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 36.4 bits (83), Expect = 0.008
 Identities = 38/256 (14%), Positives = 75/256 (29%), Gaps = 66/256 (25%)

Query: 10  CNPFSLGHFSKFLEEQMPT-------VYIKSLRIGNNSIEDIEN----------GFFM-- 50
            NP  L   ++ + + + T          K   I  +S+  +E             F   
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384

Query: 51  -NINDQV--TLACKLIGEDPELKMGYNALGVSQGGLFLRAVAQRCPSPPMLNLISLGGPQ 107
            +I   +   +   +I  D  +                  V  +     ++       P+
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMV------------------VVNKLHKYSLVE----KQPK 422

Query: 108 QGVYGLPHCLYPTHEICD---YLRRVLNVGAYWSWIQARFVQAEYWHD--PMNEASYQTG 162
           +    +P          +    L R + V  Y         +     D  P     Y   
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSI-VDHY------NIPKTFDSDDLIPPYLDQY--- 472

Query: 163 SMFLADINNELQINTNYSDNLNRLRKLVL-VKFTEDTMVQPKDSEWFGFYAPGQASTVLP 221
             F + I + L+ N  + + +   R + L  +F E   ++   + W    +    +T+  
Sbjct: 473 --FYSHIGHHLK-NIEHPERMTLFRMVFLDFRFLEQK-IRHDSTAWNA--SGSILNTLQQ 526

Query: 222 LQKTKLYIEVNIGSPE 237
           L+  K YI  N    E
Sbjct: 527 LKFYKPYICDNDPKYE 542



 Score = 31.0 bits (69), Expect = 0.49
 Identities = 26/273 (9%), Positives = 64/273 (23%), Gaps = 110/273 (40%)

Query: 3   HGMGDS----------------CCNPF-----SLGHFSK--FLEEQMPTVY--------- 30
            G+  S                C   F     +L + +    + E +  +          
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215

Query: 31  ----IKSLRIGNNSIEDIENGFFMN--------INDQV---------TLACKLI------ 63
                 ++++  +SI+        +        +   V          L+CK++      
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK 275

Query: 64  --------GEDPELKMGYNALGVSQG---GLFLRAVAQRCPSPPMLNLISLGGPQQGVYG 112
                        + + ++++ ++      L L+ +  R                     
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD------------------ 317

Query: 113 LPHCLYPTHEICDYLRRVLN-VGAYWSWIQARFVQAEYWHDPMNEASYQTGSMFLADIN- 170
           LP       E+     R L+ +      I+      + W     +         L  +  
Sbjct: 318 LP------REVLTTNPRRLSIIAES---IRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368

Query: 171 NELQINTNYSDNLNRLRKLVLVKFTEDTMVQPK 203
            E +    +           L  F     +   
Sbjct: 369 AEYR--KMFDR---------LSVFPPSAHIPTI 390



 Score = 30.6 bits (68), Expect = 0.62
 Identities = 21/150 (14%), Positives = 39/150 (26%), Gaps = 30/150 (20%)

Query: 91  RCPSP-----PMLNLISLGGPQQGVYGLPHCLYP--THEICDYLRRVLNVGAYWSWIQAR 143
            C SP      +  L+    P                H I   LRR+L       +    
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL---KSKPYENCL 247

Query: 144 FVQAEYWHDPMNEASYQTGSMFLADINNELQINTNYSDNLNRL----RKLVLVKFTEDTM 199
            V     +     A       F  +++ ++ + T +    + L       + +     T+
Sbjct: 248 LVLLNVQNAKAWNA-------F--NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298

Query: 200 VQPKDSEWFGFYA-------PGQASTVLPL 222
              +       Y        P +  T  P 
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328



 Score = 29.8 bits (66), Expect = 1.1
 Identities = 14/96 (14%), Positives = 34/96 (35%), Gaps = 11/96 (11%)

Query: 106 PQQGV--YGLP----HCLYPTHEIC-DY-LRRVLNVGAYWSWIQARFVQAEYWHDPMNEA 157
           P + V   G+       +    ++C  Y ++  ++   +W  +       E   + + + 
Sbjct: 149 PAKNVLIDGVLGSGKTWV--ALDVCLSYKVQCKMDFKIFWLNL-KNCNSPETVLEMLQKL 205

Query: 158 SYQTGSMFLADINNELQINTNYSDNLNRLRKLVLVK 193
            YQ    + +  ++   I          LR+L+  K
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 33.4 bits (75), Expect = 0.031
 Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 19/47 (40%)

Query: 184 NRLRKLVLVKFTEDTMVQPKDSEWFGFYAPGQASTVLPLQKTKLYIE 230
             L+KL      + ++   K       YA   A   L ++ T   +E
Sbjct: 20  QALKKL------QASL---K------LYADDSAPA-LAIKAT---ME 47



 Score = 28.4 bits (62), Expect = 1.4
 Identities = 5/20 (25%), Positives = 10/20 (50%), Gaps = 7/20 (35%)

Query: 237 ESQEVGQVES-------DSA 249
           E Q + ++++       DSA
Sbjct: 18  EKQALKKLQASLKLYADDSA 37


>2hhp_A Poly(A) polymerase; template-independent RNA polymerase,
           transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae}
           SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A*
           2o1p_A 2q66_A*
          Length = 530

 Score = 29.5 bits (65), Expect = 1.3
 Identities = 41/270 (15%), Positives = 65/270 (24%), Gaps = 46/270 (17%)

Query: 18  FSKFLEEQMPTVYIKSLR-----IGNNSIEDIENGFFMNINDQVTLACKLIGEDPELKMG 72
           F   L E+     I  +      I       I         DQ  +   L   D  L   
Sbjct: 120 FDSLLRERKELDEIAPVPDAFVPIIKIKFSGISIDLICARLDQPQVPLSLTLSDKNLLRN 179

Query: 73  YNALGVSQGG------LFLRAVAQRCPSPPMLNLISLGGPQQGVYGLPHC---------- 116
            +   +            L  V +       L  I L   ++ VY               
Sbjct: 180 LDEKDLRALNGTRVTDEILELVPKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAML 239

Query: 117 ------LYPTHEICDYLRRVLNVGAYWSWIQA----RFVQAEYWHDPMNEASYQTGSMFL 166
                 LYP       L R   + + W+W Q                 N   Y       
Sbjct: 240 VARICQLYPNACSAVILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHR 299

Query: 167 ADINNELQINTNYSDNLNRLRKLVLVK-----FTEDTMVQPKDSEWFGFYAPGQASTVLP 221
             +      +   + N+    K V+++           +      W   +          
Sbjct: 300 MPVITPAYPSMCATHNITESTKKVILQEFVRGVQITNDIFSNKKSWANLFEKND-----F 354

Query: 222 LQKTKLYIEVNIGSPESQE-----VGQVES 246
             + K Y+E+   +  S E      G VES
Sbjct: 355 FFRYKFYLEITAYTRGSDEQHLKWSGLVES 384


>2x5x_A PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE, hydrolase,
           biodegradation, catal; HET: PG4; 1.20A {Paucimonas
           lemoignei} PDB: 2vtv_A* 2x76_A
          Length = 342

 Score = 28.3 bits (62), Expect = 2.1
 Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 1/43 (2%)

Query: 77  GVSQGGLFLRAVAQRCPSPPML-NLISLGGPQQGVYGLPHCLY 118
             S G     A  Q   +   +   I+L G  +G+Y   +  Y
Sbjct: 134 AHSMGVSMSLATLQYYNNWTSVRKFINLAGGIRGLYSCYYTGY 176


>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide,
           carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
          Length = 394

 Score = 28.4 bits (64), Expect = 2.3
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 4/40 (10%)

Query: 41  IEDIENGFFMNINDQVTLACKLIG--EDPEL--KMGYNAL 76
           I+  + G+   + D   +A + I   +D EL   MG  A 
Sbjct: 323 IQHGDTGYLCEVGDTTGVADQAIQLLKDEELHRNMGERAR 362


>2rau_A Putative esterase; NP_343859.1, putative lipase, structural
           genomics, joint CEN structural genomics, JCSG; HET: PG4
           UNL; 1.85A {Sulfolobus solfataricus P2}
          Length = 354

 Score = 27.6 bits (60), Expect = 4.8
 Identities = 16/112 (14%), Positives = 31/112 (27%), Gaps = 10/112 (8%)

Query: 3   HGMGDSCCNPFSLGHFSKFLEEQMPTVYI-------KSLRIGNNSIED-IENGFFMNIND 54
              G     P        +L      VY            + +  +      G+   I+D
Sbjct: 70  SWNGVHYTIPDYRKSIVLYLARNGFNVYTIDYRTHYVPPFLKDRQLSFTANWGWSTWISD 129

Query: 55  QVTLACKLIGEDPELKMGYNALGVSQGGLFLRAVAQRCPSPPMLNLISLGGP 106
              +   +  +  + ++     G S GG+     +       +  LI L G 
Sbjct: 130 IKEVVSFIKRDSGQERI--YLAGESFGGIAALNYSSLYWKNDIKGLILLDGG 179


>2r5f_A Transcriptional regulator, putative; transcription regulator,
           sugar-binding domain, structural GE PFAM04198, PSI-2;
           2.10A {Pseudomonas syringae PV} SCOP: c.124.1.8
          Length = 264

 Score = 27.1 bits (60), Expect = 6.1
 Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 11/90 (12%)

Query: 76  LGVSQGGLFLRAVAQRCPSPP----MLNLISLGGPQQGVYGLPHCLYPT-HEICDYLRRV 130
           +G+S     +RA+       P       ++ L G      G+ +        +   L  +
Sbjct: 61  IGISSWSSTIRAMVSHMHPQPGKQSAQEVVQLLG------GVGNKGAFEATLLTQRLATL 114

Query: 131 LNVGAYWSWIQARFVQAEYWHDPMNEASYQ 160
           LN  A+    Q+     E     +     +
Sbjct: 115 LNCPAFLLPSQSIEQSVESKQRIVEMEEVK 144


>3ds8_A LIN2722 protein; unkonwn function, structural genomics, PSI, MCSG,
           P structure initiative; 1.80A {Listeria innocua}
          Length = 254

 Score = 26.7 bits (58), Expect = 7.6
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 4/47 (8%)

Query: 73  YNALGVSQGGLFLRAVAQRCPS----PPMLNLISLGGPQQGVYGLPH 115
            + +G S GGL L   A+        P +  L+++G P   +    +
Sbjct: 96  MDGVGHSNGGLALTYYAEDYAGDKTVPTLRKLVAIGSPFNDLDPNDN 142


>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate
          reductace, succinate dehydrogenase, CO quinol, quinone,
          oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A
          {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B*
          1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
          Length = 243

 Score = 26.4 bits (59), Expect = 9.3
 Identities = 6/12 (50%), Positives = 8/12 (66%)

Query: 50 MNINDQVTLACK 61
          M +N+   LACK
Sbjct: 67 MMVNNVPKLACK 78


>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
           asymmetric homodimer, glycoprotein, immune system; HET:
           NAG FUC; 26.00A {Homo sapiens}
          Length = 844

 Score = 26.7 bits (59), Expect = 9.7
 Identities = 6/21 (28%), Positives = 9/21 (42%)

Query: 31  IKSLRIGNNSIEDIENGFFMN 51
           +K L +  N I  I +  F  
Sbjct: 292 LKVLNLAYNKINKIADEAFYG 312


>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein,
           reductase, mitochondria MEMB oxidoreductase; HET: FAD
           HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
          Length = 282

 Score = 26.3 bits (58), Expect = 9.8
 Identities = 8/20 (40%), Positives = 11/20 (55%), Gaps = 1/20 (5%)

Query: 50  MNINDQVTLACK-LIGEDPE 68
           MNI  + TLAC   I ++  
Sbjct: 99  MNIAGENTLACICNIDQNTS 118


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.319    0.136    0.430 

Gapped
Lambda     K      H
   0.267   0.0752    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,891,312
Number of extensions: 221330
Number of successful extensions: 605
Number of sequences better than 10.0: 1
Number of HSP's gapped: 600
Number of HSP's successfully gapped: 26
Length of query: 253
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 162
Effective length of database: 4,160,982
Effective search space: 674079084
Effective search space used: 674079084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.3 bits)