RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7351
         (253 letters)



>d1ei9a_ c.69.1.13 (A:) Palmitoyl protein thioesterase 1 {Cow (Bos
           taurus) [TaxId: 9913]}
          Length = 279

 Score =  277 bits (709), Expect = 1e-94
 Identities = 133/234 (56%), Positives = 172/234 (73%)

Query: 1   MWHGMGDSCCNPFSLGHFSKFLEEQMPTVYIKSLRIGNNSIEDIENGFFMNINDQVTLAC 60
           +WHGMGDSCCNP S+G   K +E+++P +++ SL IG    ED+EN FF+N+N QVT  C
Sbjct: 10  IWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEIGKTLREDVENSFFLNVNSQVTTVC 69

Query: 61  KLIGEDPELKMGYNALGVSQGGLFLRAVAQRCPSPPMLNLISLGGPQQGVYGLPHCLYPT 120
           +++ +DP+L+ GYNA+G SQGG FLRAVAQRCPSPPM+NLIS+GG  QGV+GLP C   +
Sbjct: 70  QILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGGQHQGVFGLPRCPGES 129

Query: 121 HEICDYLRRVLNVGAYWSWIQARFVQAEYWHDPMNEASYQTGSMFLADINNELQINTNYS 180
             ICD++R+ LN GAY   IQ R VQAEYWHDP+ E  Y+  S+FLADIN E  +N +Y 
Sbjct: 130 SHICDFIRKTLNAGAYNKAIQERLVQAEYWHDPIREDIYRNHSIFLADINQERGVNESYK 189

Query: 181 DNLNRLRKLVLVKFTEDTMVQPKDSEWFGFYAPGQASTVLPLQKTKLYIEVNIG 234
            NL  L+K V+VKF  DT+V P DSEWFGFY  GQA   +PLQ++ LY +  +G
Sbjct: 190 KNLMALKKFVMVKFLNDTIVDPVDSEWFGFYRSGQAKETIPLQESTLYTQDRLG 243


>d1pjaa_ c.69.1.13 (A:) Palmitoyl protein thioesterase 2 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 268

 Score =  100 bits (249), Expect = 5e-26
 Identities = 65/247 (26%), Positives = 102/247 (41%), Gaps = 15/247 (6%)

Query: 1   MWHGMGDSCCNPFSLGHFSKFLEEQMPTVYIKSLRIGNNSIEDIENGFFMNINDQVTLAC 60
           + HG+ DS    +S  H  +++ E  P   +  L + +          +  +        
Sbjct: 7   VVHGLFDSS---YSFRHLLEYINETHPGTVVTVLDLFDGRESL--RPLWEQVQGFREAVV 61

Query: 61  KLIGEDPELKMGYNALGVSQGGLFLRAVAQRCPSPPMLNLISLGGPQQGVYGLPHCLYPT 120
            ++ + P+   G + +  SQGGL  RA+        + + ISL  PQ G YG     Y  
Sbjct: 62  PIMAKAPQ---GVHLICYSQGGLVCRALLSVMDDHNVDSFISLSSPQMGQYGDTD--YLK 116

Query: 121 HEICDYLRRVLNVGAYWSWIQARFVQAEYWHDPMNEASYQTGSMFLADINNELQI--NTN 178
                 +R  L    Y  W Q  F    YWHDP ++  Y   S FLA IN E      T 
Sbjct: 117 WLFPTSMRSNLYRICYSPWGQ-EFSICNYWHDPHHDDLYLNASSFLALINGERDHPNATV 175

Query: 179 YSDNLNRLRKLVLVKFTEDTMVQPKDSEWFGFYAPGQASTVLPLQKTKLYIEVNIGSPES 238
           +  N  R+  LVL+   +D ++ P  S +FGFY      TVL +++  +Y+  + G    
Sbjct: 176 WRKNFLRVGHLVLIGGPDDGVITPWQSSFFGFY--DANETVLEMEEQLVYLRDSFGLKTL 233

Query: 239 QEVGQVE 245
              G + 
Sbjct: 234 LARGAIV 240


>d1ispa_ c.69.1.18 (A:) Lipase A {Bacillus subtilis [TaxId: 1423]}
          Length = 179

 Score = 33.7 bits (76), Expect = 0.009
 Identities = 19/149 (12%), Positives = 42/149 (28%), Gaps = 10/149 (6%)

Query: 1   MWHGMGDSCCNPFSLGHFSKFLEEQMPTVYIKSLRIGNNSIEDIENGFFMNINDQVTLAC 60
           M HG+G +    F+      +L  Q  +          +      N   +       +  
Sbjct: 7   MVHGIGGA---SFNFAGIKSYLVSQGWSRDKLYAVDFWDKTGTNYNNGPVLSRFVQKVLD 63

Query: 61  KLIGEDPELKMGYNALGVSQGGLFLRAVAQRCPSPPML-NLISLGGPQQGVYGLPHCLYP 119
           +   +  ++      +  S GG       +       + N+++LGG  +   G       
Sbjct: 64  ETGAKKVDI------VAHSMGGANTLYYIKNLDGGNKVANVVTLGGANRLTTGKALPGTD 117

Query: 120 THEICDYLRRVLNVGAYWSWIQARFVQAE 148
            ++   Y     +         +R   A 
Sbjct: 118 PNQKILYTSIYSSADMIVMNYLSRLDGAR 146


>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas
           mobilis [TaxId: 542]}
          Length = 175

 Score = 28.3 bits (62), Expect = 0.62
 Identities = 10/92 (10%), Positives = 22/92 (23%), Gaps = 12/92 (13%)

Query: 109 GVYGLPHCLYPTHEICDYLRRVLNVGAYWSWI----------QARFVQAEYWHDPMNEAS 158
           G            +       V+ +   ++              + V AE     +N   
Sbjct: 72  GTSWGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWTDIPDPKKLVLAEPRSVVVNGIR 131

Query: 159 YQ--TGSMFLADINNELQINTNYSDNLNRLRK 188
           +       +L  +  ++   T   D    L  
Sbjct: 132 FPSVHLKDYLTRLAQKVSKKTGSLDFFKSLNA 163


>d2pbea1 a.160.1.5 (A:138-282) Aminoglycoside 6-adenylyltransferase
           AadK {Bacillus subtilis [TaxId: 1423]}
          Length = 145

 Score = 26.2 bits (58), Expect = 2.3
 Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 2/39 (5%)

Query: 13  FSLGHFSKFLEEQMPTVYIKSLRI--GNNSIEDIENGFF 49
           FS+G   KF++  +     + L      N  +++    F
Sbjct: 69  FSMGKNYKFMKRYLSNKEWEELMSTYSVNGYQEMWKSLF 107


>d1muka_ e.8.1.4 (A:) Reovirus polymerase lambda3 {Reovirus [TaxId:
           10891]}
          Length = 1264

 Score = 25.3 bits (55), Expect = 9.2
 Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 2/28 (7%)

Query: 136 YWSWIQA--RFVQAEYWHDPMNEASYQT 161
           Y +W  A  R        DP+ +A  ++
Sbjct: 425 YRTWYLAAARMAAQPRTWDPLFQAIMRS 452


>d1w55a2 d.79.5.1 (A:208-370) IspD/ispF bifunctional enzyme, MECDP
           synthase domain {Campylobacter jejuni [TaxId: 197]}
          Length = 163

 Score = 24.8 bits (54), Expect = 9.4
 Identities = 8/70 (11%), Positives = 21/70 (30%), Gaps = 3/70 (4%)

Query: 1   MWHGMGDSCCNPFSLGHFSKFLEEQMPTVYIKSLRIGNNSIEDIENGFFMNINDQVTLAC 60
           + H + D+      LG   +   +        +         D        + +   +  
Sbjct: 42  LAHSLTDAILGAAGLGDIGELYPDTDMKFKNANSMELLKQAYDKVREIGFELIN---IDI 98

Query: 61  KLIGEDPELK 70
            ++ + P+LK
Sbjct: 99  CVMAQSPKLK 108


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.136    0.430 

Gapped
Lambda     K      H
   0.267   0.0384    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 976,663
Number of extensions: 43581
Number of successful extensions: 93
Number of sequences better than 10.0: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 12
Length of query: 253
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 170
Effective length of database: 1,268,006
Effective search space: 215561020
Effective search space used: 215561020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.7 bits)