RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7353
(139 letters)
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 61.7 bits (151), Expect = 1e-13
Identities = 33/95 (34%), Positives = 43/95 (45%), Gaps = 20/95 (21%)
Query: 19 YKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQR-----KVFPCPVCGKEFSRPDKMKNH 73
C C K F++ Y RH + K + CPVCG F R D+M H
Sbjct: 8 VACEICGK-----IFRDVYHLNRH--------KLSHSGEKPYSCPVCGLRFKRKDRMSYH 54
Query: 74 MK--TGCQRKVFPCPVCGKEFSRPDKMKNHMKTVH 106
++ G K + C CGK FSRPD + H+K VH
Sbjct: 55 VRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 41.3 bits (98), Expect = 6e-06
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 53 KVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
C +CGK F + H + K + CPVCG F R D+M H+++
Sbjct: 6 SGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRS 57
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 60.2 bits (147), Expect = 2e-13
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 53 KVFPCPVCGKEFSRPDKMKNHMK--TGCQRKVFPCPVCGKEFSRPDKMKNHMKTVH 106
K + C +C F++ MK H+ F CP C +R + H++ H
Sbjct: 14 KPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 44.0 bits (105), Expect = 4e-07
Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 6/58 (10%)
Query: 19 YKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKT 76
Y+C C F + + H L F CP C +R + H++
Sbjct: 16 YECYICHA-----RFTQSGTMKMHI-LQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 59.5 bits (145), Expect = 3e-13
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 53 KVFPCPVCGKEFSRPDKMKNHMKTGCQR--KVFPCPVCGKEFSRPDKMKNHMKTVH 106
+ C VC + ++ H T +R KV+PCP C KEF+R D M H+K +H
Sbjct: 9 HTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 49.9 bits (120), Expect = 2e-09
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 19 YKCMECAKVDVIKTFKNKYSFQRHA-FLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKT 76
Y+C C+ + + + +F RH + KV+PCP C KEF+R D M H+K
Sbjct: 11 YRCKVCS-----RVYTHISNFCRHYVTSHKRN--VKVYPCPFCFKEFTRKDNMTAHVKI 62
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 57.0 bits (138), Expect = 3e-12
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 55 FPCPVCGKEFSRPDKMKNHMKT---GCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMP 111
C +CG + + H + FPC CGK F +PD + H H +
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 112 AT 113
A
Sbjct: 68 AP 69
Score = 39.7 bits (93), Expect = 1e-05
Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 5/58 (8%)
Query: 19 YKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKT 76
+C C T + K S H + E FPC CGK F +PD + H
Sbjct: 8 LQCEICGF-----TCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSK 60
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 55.0 bits (133), Expect = 2e-11
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 53 KVFPCPV--CGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
+ + CPV C + FSR D++ H++ +K F C +C + FSR D + H++T
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 71
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 54.5 bits (132), Expect = 2e-10
Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 17/97 (17%)
Query: 19 YKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQR-----KVFPCPV--CGKEFSRPDKMK 71
+ C ++ FK +Y H R K C C K +SR + +K
Sbjct: 35 FVCHWGGCSRELRPFKAQYMLVVH--------MRRHTGEKPHKCTFEGCRKSYSRLENLK 86
Query: 72 NHMKTGCQRKVFPC--PVCGKEFSRPDKMKNHMKTVH 106
H+++ K + C C K FS H H
Sbjct: 87 THLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123
Score = 51.4 bits (124), Expect = 3e-09
Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 12/93 (12%)
Query: 19 YKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCG-----KEFSRPDKMKNH 73
+ C++ F ++ H H +RK F C G + F + H
Sbjct: 4 CRWDGCSQ-----EFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVH 58
Query: 74 MKTGCQRKVFPCPV--CGKEFSRPDKMKNHMKT 104
M+ K C C K +SR + +K H+++
Sbjct: 59 MRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRS 91
Score = 39.9 bits (94), Expect = 4e-05
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 12/62 (19%)
Query: 53 KVFPCPVCGKEFSRPDKMKNHMKTGCQR-----KVFPCPVCG-----KEFSRPDKMKNHM 102
C +EF +++ +H+ + + K F C G + F + HM
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINS--EHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHM 59
Query: 103 KT 104
+
Sbjct: 60 RR 61
Score = 30.3 bits (69), Expect = 0.13
Identities = 5/26 (19%), Positives = 12/26 (46%)
Query: 81 KVFPCPVCGKEFSRPDKMKNHMKTVH 106
C +EF +++ +H+ + H
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEH 27
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 52.9 bits (128), Expect = 2e-10
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 20/93 (21%)
Query: 19 YKCM--ECAKVDVIKTFKNKYSFQRHAFLYHEGCQR-----KVFPCPVCGKEFSRPDKMK 71
Y C C + F S RH R K F C +C + FSR D +
Sbjct: 5 YACPVESCDR-----RFSQSGSLTRH--------IRIHTGQKPFQCRICMRNFSRSDHLT 51
Query: 72 NHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
H++T K F C +CG++F+R D+ K H K
Sbjct: 52 THIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 52.2 bits (126), Expect = 4e-10
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 53 KVFPC--PVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
K + C C F+R D++ H + K F C VC + FSR D + HMK
Sbjct: 44 KPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKR 97
Score = 41.1 bits (97), Expect = 7e-06
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 52 RKVFPCPV--CGKEFSRPDKMKNHMKTGCQRKVFPC--PVCGKEFSRPDKMKNHMKT 104
R++ C C K +++ +K H++T K + C C F+R D++ H +
Sbjct: 13 RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK 69
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 50.6 bits (122), Expect = 1e-09
Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 19/90 (21%)
Query: 19 YKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQR-----KVFPCPVCGKEFSRPDKMKNH 73
++C C + F H R K F C +CG++F+R D+ K H
Sbjct: 4 FQCRICMR-----NFSRSDHLTTH--------IRTHTGEKPFACDICGRKFARSDERKRH 50
Query: 74 MKTGCQRKVFPCPVCGKEFSRPDKMKNHMK 103
+ S+ ++N +
Sbjct: 51 RDIQHI-LPILEDKVEELLSKNYHLENEVA 79
Score = 50.6 bits (122), Expect = 2e-09
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 53 KVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
K F C +C + FSR D + H++T K F C +CG++F+R D+ K H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 50.3 bits (119), Expect = 4e-09
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
Query: 26 KVDVIKTFKNKYSFQRHAFLYHEGCQR--KVFPCPVCGKEFSRPDKMKNHMKTGCQRKVF 83
+ V N ++LY + F CP+C FS +K H++
Sbjct: 44 RAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRY--TEHTK 101
Query: 84 PCPVCGKEFSRPDKMKNHMKTVH 106
CPVC KEF+ D +H+ H
Sbjct: 102 VCPVCKKEFTSTDSALDHVCKKH 124
Score = 29.9 bits (66), Expect = 0.15
Identities = 9/59 (15%), Positives = 18/59 (30%)
Query: 52 RKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFM 110
R + + + + F CP+C FS +K H++ +
Sbjct: 44 RAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKV 102
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 49.8 bits (120), Expect = 6e-09
Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 9/90 (10%)
Query: 19 YKCMECAKVDVIKTFKNKYSFQRH--AFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKT 76
++C +C K + K + H + +VF C VC + F R +++ HM +
Sbjct: 36 FECPKCGK-----CYFRKENLLEHEARNCMNRS--EQVFTCSVCQETFRRRMELRLHMVS 88
Query: 77 GCQRKVFPCPVCGKEFSRPDKMKNHMKTVH 106
+ C C ++F + +++HM +H
Sbjct: 89 HTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 49.8 bits (120), Expect = 6e-09
Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 25/96 (26%)
Query: 19 YKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQR-----KVFPCPVCGKEFSRPDKMKNH 73
+C C K F +KY + H R K F CP CGK + R + + H
Sbjct: 8 VECPTCHK-----KFLSKYYLKVH--------NRKHTGEKPFECPKCGKCYFRKENLLEH 54
Query: 74 MK-----TGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
+VF C VC + F R +++ HM +
Sbjct: 55 EARNCMNRS--EQVFTCSVCQETFRRRMELRLHMVS 88
Score = 37.5 bits (88), Expect = 2e-04
Identities = 16/52 (30%), Positives = 22/52 (42%)
Query: 53 KVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
CP C K+F +K H + K F CP CGK + R + + H
Sbjct: 6 SGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEAR 57
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 48.3 bits (116), Expect = 9e-09
Identities = 23/94 (24%), Positives = 34/94 (36%), Gaps = 20/94 (21%)
Query: 18 IYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQR-----KVFPC--PVCGKEFSRPDKM 70
C K T+ + H R K + C CG +F+R D++
Sbjct: 7 TCDYAGCGK-----TYTKSSHLKAH--------LRTHTGEKPYHCDWDGCGWKFARSDEL 53
Query: 71 KNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
H + + F C C + FSR D + HMK
Sbjct: 54 TRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKR 87
Score = 39.8 bits (94), Expect = 2e-05
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 53 KVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPC--PVCGKEFSRPDKMKNHMKT 104
CGK +++ +K H++T K + C CG +F+R D++ H +
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK 59
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 49.6 bits (119), Expect = 1e-08
Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 13/94 (13%)
Query: 19 YKCMECAKVDVIKTFKNKYSFQRHAFL------YHEGCQRKVFPCPVCGKEFSRPDKMKN 72
C + TF + H + CP GK F K+ N
Sbjct: 26 RPKKSCDR-----TFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVN 80
Query: 73 HMKTGCQRKVFPCPV--CGKEFSRPDKMKNHMKT 104
H++ K FPCP CGK F+R + +K H +T
Sbjct: 81 HIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRT 114
Score = 43.8 bits (104), Expect = 2e-06
Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 14/72 (19%)
Query: 47 HEGCQR-----KVFPCPVCGKEFSRPDKMKNHM---------KTGCQRKVFPCPVCGKEF 92
C+ P C + FS ++ H+ + CP GK F
Sbjct: 13 ELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSF 72
Query: 93 SRPDKMKNHMKT 104
K+ NH++
Sbjct: 73 KAKYKLVNHIRV 84
Score = 43.4 bits (103), Expect = 2e-06
Identities = 29/95 (30%), Positives = 37/95 (38%), Gaps = 22/95 (23%)
Query: 19 YKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQR-----KVFPCPV--CGKEFSRPDKMK 71
+C K +FK KY H R K FPCP CGK F+R + +K
Sbjct: 63 EECPREGK-----SFKAKYKLVNH--------IRVHTGEKPFPCPFPGCGKIFARSENLK 109
Query: 72 NHMKTGCQRKVFPCPV--CGKEFSRPDKMKNHMKT 104
H +T K F C C + F+ K HM
Sbjct: 110 IHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHV 144
Score = 36.9 bits (86), Expect = 6e-04
Identities = 7/47 (14%), Positives = 14/47 (29%)
Query: 60 CGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVH 106
G + + + P C + FS ++ H+ H
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEH 49
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 46.8 bits (112), Expect = 4e-08
Identities = 20/75 (26%), Positives = 23/75 (30%), Gaps = 6/75 (8%)
Query: 19 YKCMECAKVDVIKTFKNKYSFQRHAFLYH-EGCQRKVFPCPVCGKEFSRPDKMKNHMKTG 77
Y C C K TF+ K H YH F C CGK F+R + M H
Sbjct: 16 YACSHCDK-----TFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNC 70
Query: 78 CQRKVFPCPVCGKEF 92
G
Sbjct: 71 AGPDGVEGENSGPSS 85
Score = 39.4 bits (93), Expect = 2e-05
Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 53 KVFPCPVCGKEFSRPDKMKNHMKT----GCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
K + C C K F + + H K F C CGK F+R + M H
Sbjct: 14 KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN 69
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 46.7 bits (112), Expect = 8e-08
Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 22/95 (23%)
Query: 19 YKC--MECAKVDVIKTFKNKYSFQRHAFLYHEGCQR-----KVFPCPVCGKEFSRPDKMK 71
Y+C +C + F +RH QR K F C C ++FSR D +K
Sbjct: 37 YQCDFKDCER-----RFSRSDQLKRH--------QRRHTGVKPFQCKTCQRKFSRSDHLK 83
Query: 72 NHMKTGCQRKVFPC--PVCGKEFSRPDKMKNHMKT 104
H +T K F C P C K+F+R D++ H
Sbjct: 84 THTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNM 118
Score = 37.9 bits (89), Expect = 2e-04
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 58 PVCGKEFSRPDKMKNHMKTGCQRKVFPCPV--CGKEFSRPDKMKNHMKT 104
P C K + + ++ H + K + C C + FSR D++K H +
Sbjct: 12 PGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR 60
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 45.5 bits (107), Expect = 2e-07
Identities = 15/94 (15%), Positives = 24/94 (25%), Gaps = 8/94 (8%)
Query: 16 EGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEG--CQRKVFPCPVCGKEFSRPDKMKNH 73
++C +C+ + H + R +
Sbjct: 17 ASKFRCKDCSA-----AYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEM 71
Query: 74 MKTGCQRKVFPCPVCGKEFSRPDKMKNHM-KTVH 106
+KV C CG F + HM KT H
Sbjct: 72 EGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKH 105
Score = 28.6 bits (63), Expect = 0.34
Identities = 7/42 (16%), Positives = 11/42 (26%)
Query: 65 SRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVH 106
S K + F C C + ++ HM
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETG 43
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 44.3 bits (106), Expect = 4e-07
Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 18/91 (19%)
Query: 19 YKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQR-----KVFPCPVCGKEFSRPDKMKNH 73
+KC C K F K + H R K + C C + + H
Sbjct: 9 HKCEVCGK-----CFSRKDKLKTH--------MRCHTGVKPYKCKTCDYAAADSSSLNKH 55
Query: 74 MKTGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
++ + F C +C ++ H+++
Sbjct: 56 LRIHSDERPFKCQICPYASRNSSQLTVHLRS 86
Score = 37.0 bits (87), Expect = 2e-04
Identities = 17/52 (32%), Positives = 24/52 (46%)
Query: 53 KVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
C VCGK FSR DK+K HM+ K + C C + + H++
Sbjct: 7 GPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI 58
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 44.0 bits (105), Expect = 8e-07
Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 22/95 (23%)
Query: 19 YKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQR-----KVFPCPV--CGKEFSRPDKMK 71
+ C EC K F +RH Q K F C CGK FS ++
Sbjct: 35 HVCAECGK-----AFVESSKLKRH--------QLVHTGEKPFQCTFEGCGKRFSLDFNLR 81
Query: 72 NHMKTGCQRKVFPCPV--CGKEFSRPDKMKNHMKT 104
H++ + + CP C K+F++ +K+H+ T
Sbjct: 82 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILT 116
Score = 43.7 bits (104), Expect = 1e-06
Identities = 23/94 (24%), Positives = 34/94 (36%), Gaps = 21/94 (22%)
Query: 19 YKC--MECAKVDVIKTFKNKYSFQRHAFLYHEGCQR----KVFPCPVCGKEFSRPDKMKN 72
C C K F++ + ++H +V C CGK F K+K
Sbjct: 6 IACPHKGCTK-----MFRDNSAMRKH--------LHTHGPRVHVCAECGKAFVESSKLKR 52
Query: 73 HMKTGCQRKVFPCPV--CGKEFSRPDKMKNHMKT 104
H K F C CGK FS ++ H++
Sbjct: 53 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRI 86
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 42.5 bits (101), Expect = 9e-07
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 53 KVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVH 106
+ F C VC + F+R + +K H ++ K +PC +C + F+R D + H + +H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 32.8 bits (76), Expect = 0.003
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 18/62 (29%)
Query: 19 YKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQR-----KVFPCPVCGKEFSRPDKMKNH 73
+ C C + F + +RH R K +PC +C + F+R D + H
Sbjct: 3 FVCEVCT-----RAFARQEHLKRH--------YRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Query: 74 MK 75
+
Sbjct: 50 AQ 51
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 43.7 bits (102), Expect = 1e-06
Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
Query: 47 HEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVH 106
HE R CP C F P+ + H ++ C+ K C C + F + H VH
Sbjct: 35 HERLCRNAAVCPYCSLRFFSPELKQEH-ESKCEYKKLTCLECMRTFKSSFSIWRHQVEVH 93
Query: 107 DCFMPATTPQGQRG 120
+ A T G
Sbjct: 94 NQNNMAPTSGPSSG 107
Score = 27.2 bits (59), Expect = 0.98
Identities = 5/43 (11%), Positives = 16/43 (37%)
Query: 68 DKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFM 110
+ ++V+ C +C + S + +H + + +
Sbjct: 2 SSGSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAV 44
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 42.8 bits (102), Expect = 1e-06
Identities = 26/93 (27%), Positives = 35/93 (37%), Gaps = 22/93 (23%)
Query: 19 YKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQR-----KVFPCPVCGKEFSRPDKMKNH 73
+ C C K +FK + H + +PC CGK F + MK H
Sbjct: 2 FDCKICGK-----SFKRSSTLSTH--------LLIHSDTRPYPCQYCGKRFHQKSDMKKH 48
Query: 74 MK--TGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
TG K C VCGK FS+ + H +
Sbjct: 49 TFIHTG--EKPHKCQVCGKAFSQSSNLITHSRK 79
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 42.6 bits (101), Expect = 2e-06
Identities = 20/98 (20%), Positives = 26/98 (26%), Gaps = 22/98 (22%)
Query: 18 IYKCM--ECAKVDVIKTFKNKYSFQRHAFLYHEGCQR-----KVFPC--PVCGKEFSRPD 68
+Y C C K FK + H Q + C C K FS P
Sbjct: 1 MYVCHFENCGK-----AFKKHNQLKVH--------QFSHTQQLPYECPHEGCDKRFSLPS 47
Query: 69 KMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVH 106
++K H K C H+ H
Sbjct: 48 RLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 42.0 bits (99), Expect = 2e-06
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 52 RKVFPCPV--CGKEFSRPDKMKNHMKTGCQRKVFPC--PVCGKEFSRPDKMKNHMKT 104
+ C CGK + + +K H +T K F C C + F+R D++ H +T
Sbjct: 15 IRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 41.0 bits (97), Expect = 5e-06
Identities = 20/78 (25%), Positives = 27/78 (34%), Gaps = 11/78 (14%)
Query: 19 YKC--MECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCP--VCGKEFSRPDKMKNHM 74
C C + F N+ H H +K F CP CGK F+ +K HM
Sbjct: 8 MPCDFPGCGR-----IFSNRQYLNHHKKYQHIH--QKSFSCPEPACGKSFNFKKHLKEHM 60
Query: 75 KTGCQRKVFPCPVCGKEF 92
K + + C G
Sbjct: 61 KLHSDTRDYICEFSGPSS 78
Score = 39.1 bits (92), Expect = 2e-05
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 9/59 (15%)
Query: 53 KVFPCPV--CGKEFSRPDKMKNHMK---TGCQRKVFPCP--VCGKEFSRPDKMKNHMKT 104
PC CG+ FS + +H K +K F CP CGK F+ +K HMK
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIH--QKSFSCPEPACGKSFNFKKHLKEHMKL 62
Score = 28.7 bits (65), Expect = 0.20
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 81 KVFPCPV--CGKEFSRPDKMKNHMKTVH 106
PC CG+ FS + +H K H
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQH 33
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 42.8 bits (102), Expect = 5e-06
Identities = 33/93 (35%), Positives = 45/93 (48%), Gaps = 22/93 (23%)
Query: 19 YKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQR-----KVFPCPVCGKEFSRPDKMKNH 73
YKC EC K +F +K RH QR K + CP CGK FS+ ++ H
Sbjct: 50 YKCPECGK-----SFSDKKDLTRH--------QRTHTGEKPYKCPECGKSFSQRANLRAH 96
Query: 74 MK--TGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
+ TG K + CP CGK FS+ ++ H +T
Sbjct: 97 QRTHTG--EKPYACPECGKSFSQLAHLRAHQRT 127
Score = 42.4 bits (101), Expect = 7e-06
Identities = 33/91 (36%), Positives = 41/91 (45%), Gaps = 18/91 (19%)
Query: 19 YKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQR-----KVFPCPVCGKEFSRPDKMKNH 73
Y C EC K +F + H QR K + CP CGK FSR D + H
Sbjct: 106 YACPECGK-----SFSQLAHLRAH--------QRTHTGEKPYKCPECGKSFSREDNLHTH 152
Query: 74 MKTGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
+T K + CP CGK FSR D + H +T
Sbjct: 153 QRTHTGEKPYKCPECGKSFSRRDALNVHQRT 183
Score = 41.3 bits (98), Expect = 2e-05
Identities = 29/91 (31%), Positives = 38/91 (41%), Gaps = 18/91 (19%)
Query: 19 YKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQR-----KVFPCPVCGKEFSRPDKMKNH 73
Y C EC K+F H QR K + CP CGK FS + H
Sbjct: 22 YACPECG-----KSFSRSDHLAEH--------QRTHTGEKPYKCPECGKSFSDKKDLTRH 68
Query: 74 MKTGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
+T K + CP CGK FS+ ++ H +T
Sbjct: 69 QRTHTGEKPYKCPECGKSFSQRANLRAHQRT 99
Score = 34.3 bits (80), Expect = 0.006
Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 13/78 (16%)
Query: 32 TFKNKYSFQRHAFLYHEGCQR-----KVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCP 86
+ S K + CP CGK FSR D + H +T K + CP
Sbjct: 2 SEFGSSSSVAQ--------AALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCP 53
Query: 87 VCGKEFSRPDKMKNHMKT 104
CGK FS + H +T
Sbjct: 54 ECGKSFSDKKDLTRHQRT 71
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 41.3 bits (98), Expect = 6e-06
Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 22/93 (23%)
Query: 19 YKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQR-----KVFPCPVCGKEFSRPDKMKNH 73
+ C C + F Y+ H +R + + C +C K F R D +++H
Sbjct: 18 FICKFCGR-----HFTKSYNLLIH--------ERTHTDERPYTCDICHKAFRRQDHLRDH 64
Query: 74 MK--TGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
+ K F C CGK F + + H
Sbjct: 65 RYIHSK--EKPFKCQECGKGFCQSRTLAVHKTL 95
Score = 32.8 bits (76), Expect = 0.008
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 53 KVFPCPVCGKEFSRPDKMKNHMK--TGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
K F C CG+ F++ + H + T + + C +C K F R D +++H
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTD--ERPYTCDICHKAFRRQDHLRDHRYI 67
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 39.9 bits (94), Expect = 9e-06
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 53 KVFPCPVCGKEFSRPDKMKNHMK---TGCQRKVFPCPVCGKEFS 93
K + C CGK FSRPD + H+K T + C V S
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTS--ERPHKCQVWVSGPS 52
Score = 33.7 bits (78), Expect = 0.002
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 81 KVFPCPVCGKEFSRPDKMKNHMKTVH 106
K + C CGK FSRPD + H+K VH
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVH 36
Score = 31.0 bits (71), Expect = 0.017
Identities = 10/47 (21%), Positives = 11/47 (23%), Gaps = 7/47 (14%)
Query: 19 YKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFS 65
Y C C K F H H + C V S
Sbjct: 13 YICQSCG-----KGFSRPDHLNGHIKQVHTS--ERPHKCQVWVSGPS 52
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 39.7 bits (94), Expect = 3e-05
Identities = 16/81 (19%), Positives = 25/81 (30%), Gaps = 20/81 (24%)
Query: 19 YKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQR-----KVFPCPVCGKEFSRPDKMKNH 73
Y C C K FK K+ H + K + C +C K F D H
Sbjct: 38 YGCGVCGK-----KFKMKHHLVGH--------MKIHTGIKPYECNICAKRFMWRDSFHRH 84
Query: 74 MKTGCQRKVFPCPVCGKEFSR 94
+ + K + + +
Sbjct: 85 VTSC--TKSYEAAKAEQNTTE 103
Score = 39.3 bits (93), Expect = 4e-05
Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 19/81 (23%)
Query: 19 YKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQR-----KVFPCPVCGKEFSRPDKMKNH 73
Y C +C K +F +K RH + + C VCGK+F + H
Sbjct: 11 YPC-QCGK-----SFTHKSQRDRH--------MSMHLGLRPYGCGVCGKKFKMKHHLVGH 56
Query: 74 MKTGCQRKVFPCPVCGKEFSR 94
MK K + C +C K F
Sbjct: 57 MKIHTGIKPYECNICAKRFMW 77
Score = 32.0 bits (74), Expect = 0.019
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 60 CGKEFSRPDKMKNHMK--TGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
CGK F+ + HM G + + C VCGK+F + HMK
Sbjct: 15 CGKSFTHKSQRDRHMSMHLG--LRPYGCGVCGKKFKMKHHLVGHMKI 59
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain
associated with ring and TRAF domains protein 1,
malignant 62; NMR {Homo sapiens}
Length = 76
Score = 38.8 bits (90), Expect = 3e-05
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 50 CQRKVFPCPV-CGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
C V PCP C + SR D + H++ C ++ C CG +FS ++H
Sbjct: 12 CSFNVIPCPNRCPMKLSRRD-LPAHLQHDCPKRRLKCEFCGCDFSGEA-YESHEGM 65
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 38.2 bits (88), Expect = 4e-05
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 57 CPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
C CG +P +K H++T + + C C F + HMK+
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 27.0 bits (59), Expect = 0.51
Identities = 14/63 (22%), Positives = 20/63 (31%), Gaps = 8/63 (12%)
Query: 19 YKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGC 78
Y C EC K ++H H + + C C F + HMK+
Sbjct: 2 YICEECGI-----RXKKPSMLKKH-IRTHTD--VRPYHCTYCNFSFKTKGNLTKHMKSKA 53
Query: 79 QRK 81
K
Sbjct: 54 HSK 56
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 40.1 bits (93), Expect = 6e-05
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 46 YHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
+ C+ + CP C + F + + H+ C R+ C C + D + H +
Sbjct: 102 HQAHCEFALMDCPQCQRPFQKFH-INIHILKDCPRRQVSCDNCAASMAFED-KEIHDQN 158
Score = 26.2 bits (57), Expect = 3.4
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 57 CPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
CP G + + C+ + CP C + F + + H+
Sbjct: 85 CPNEGCLHKMELRHLEDHQAHCEFALMDCPQCQRPFQKFH-INIHILK 131
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 38.7 bits (89), Expect = 7e-05
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 51 QRKVFPCPVCGK-EFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVH 106
+ CP C + +K HM+ C++++F C CGK+ MK H+ H
Sbjct: 31 DKGSVSCPTCQAVGRKTIEGLKKHMEN-CKQEMFTCHHCGKQLRSLAGMKYHVMANH 86
Score = 29.8 bits (66), Expect = 0.12
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 8/60 (13%)
Query: 17 GIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKT 76
G C C V K ++H E C++++F C CGK+ MK H+
Sbjct: 33 GSVSCPTCQAV----GRKTIEGLKKHM----ENCKQEMFTCHHCGKQLRSLAGMKYHVMA 84
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 37.1 bits (87), Expect = 1e-04
Identities = 12/52 (23%), Positives = 19/52 (36%)
Query: 53 KVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
C C S ++ H + C + F C C + +P + HMK
Sbjct: 8 HPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKK 59
Score = 31.7 bits (73), Expect = 0.011
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 18/63 (28%)
Query: 19 YKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQR-----KVFPCPVCGKEFSRPDKMKNH 73
KC EC+ + +K + + H +R + F C C + +P + H
Sbjct: 10 EKCSECS-----YSCSSKAALRIH--------ERIHCTDRPFKCNYCSFDTKQPSNLSKH 56
Query: 74 MKT 76
MK
Sbjct: 57 MKK 59
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 37.6 bits (87), Expect = 2e-04
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 9/64 (14%)
Query: 50 CQRKVFPCPVCGKEFSRPDKMKNHMK---TGCQRKV------FPCPVCGKEFSRPDKMKN 100
+ P C + FS ++ H+ G + CP GK F K+ N
Sbjct: 21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVN 80
Query: 101 HMKT 104
H++
Sbjct: 81 HIRV 84
Score = 33.4 bits (76), Expect = 0.005
Identities = 16/77 (20%), Positives = 24/77 (31%), Gaps = 11/77 (14%)
Query: 15 TEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKV------FPCPVCGKEFSRPD 68
+ C + TF + H + H G + CP GK F
Sbjct: 22 AQLSRPKKSCDR-----TFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKY 76
Query: 69 KMKNHMKTGCQRKVFPC 85
K+ NH++ K P
Sbjct: 77 KLVNHIRVHTGEKSGPS 93
Score = 29.9 bits (67), Expect = 0.099
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 78 CQRKVFPCPVCGKEFSRPDKMKNHMKTVH 106
+ P C + FS ++ H+ H
Sbjct: 21 EAQLSRPKKSCDRTFSTMHELVTHVTMEH 49
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 37.6 bits (88), Expect = 4e-04
Identities = 23/99 (23%), Positives = 34/99 (34%), Gaps = 26/99 (26%)
Query: 19 YKCME--CAKVDVIKTFKNKYSFQRHAFLYHEGCQR-----KVFPC--PVCGKEFSRPDK 69
+ C E C K F + + RH K F C C F+
Sbjct: 43 FPCKEEGCEK-----GFTSLHHLTRH--------SLTHTGEKNFTCDSDGCDLRFTTKAN 89
Query: 70 MKNHMK--TGCQRKVFPCPV--CGKEFSRPDKMKNHMKT 104
MK H + V+ C CGK F + +++K H +
Sbjct: 90 MKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFS 128
Score = 37.2 bits (87), Expect = 6e-04
Identities = 24/100 (24%), Positives = 31/100 (31%), Gaps = 28/100 (28%)
Query: 19 YKCM--ECAKVDVIKTFKNKYSFQRHAFLYHEGCQR-----KVFPC--PVCGKEFSRPDK 69
Y C C K FK + H Q + C C K FS P +
Sbjct: 105 YVCHFENCGK-----AFKKHNQLKVH--------QFSHTQQLPYECPHEGCDKRFSLPSR 151
Query: 70 MKNHMK--TGCQR-KVFPCPVCGKEFSRPDKMKNHMKTVH 106
+K H K G K C GK ++ H+ H
Sbjct: 152 LKRHEKVHAGYPCKKDDSCSFVGKTWTL---YLKHVAECH 188
Score = 31.4 bits (72), Expect = 0.060
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 60 CGKEFSRPDKMKNHMK--TGCQRKVFPC--PVCGKEFSRPDKMKNHMKT 104
CG +++ K++ H+ TG K FPC C K F+ + H T
Sbjct: 20 CGAAYNKNWKLQAHLCKHTG--EKPFPCKEEGCEKGFTSLHHLTRHSLT 66
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 35.5 bits (83), Expect = 6e-04
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 53 KVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
K + C C F + +H K + C +CG +F+RP +K H +
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRI 67
Score = 34.7 bits (81), Expect = 0.001
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 18/63 (28%)
Query: 19 YKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQR-----KVFPCPVCGKEFSRPDKMKNH 73
YKC C +F+ K + H + K + C +CG +F+RP +K H
Sbjct: 18 YKCDRCQA-----SFRYKGNLASH--------KTVHTGEKPYRCNICGAQFNRPANLKTH 64
Query: 74 MKT 76
+
Sbjct: 65 TRI 67
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 35.4 bits (81), Expect = 7e-04
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 50 CQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVH 106
C ++ C C E S +K H C + C CG+ D +K H +
Sbjct: 13 CPLRLAVCQHCDLELSILK-LKEHEDY-CGARTELCGNCGRNVLVKD-LKTHPEVCG 66
Score = 25.7 bits (56), Expect = 2.1
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 68 DKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNH 101
H +T C ++ C C E S +K H
Sbjct: 3 SGSSGHEETECPLRLAVCQHCDLELSILK-LKEH 35
Score = 25.0 bits (54), Expect = 4.1
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 47 HEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRK 81
+ C + C CG+ D +K H + C R+
Sbjct: 36 EDYCGARTELCGNCGRNVLVKD-LKTHPEV-CGRE 68
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 34.2 bits (79), Expect = 8e-04
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 53 KVFPCPVCGKEFSRPDKMKNHMKT 76
K F CP C + FSR D + H K
Sbjct: 10 KPFQCPDCDRSFSRSDHLALHRKR 33
Score = 34.2 bits (79), Expect = 8e-04
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 81 KVFPCPVCGKEFSRPDKMKNHMKT 104
K F CP C + FSR D + H K
Sbjct: 10 KPFQCPDCDRSFSRSDHLALHRKR 33
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 34.9 bits (79), Expect = 0.002
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 51 QRKVFPCPVCGKEFSRP-DKMKNHMKTGCQRK-VFPCPVCGKEFSRPDKMKNHMKTVH 106
+R CP C + +K HM+ + + C C K+F + H H
Sbjct: 21 ERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEH 78
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 31.7 bits (73), Expect = 0.006
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 53 KVFPCPVCGKEFSRPDKMKNHMKT 76
K +PC +CG F +K+H++
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRI 33
Score = 31.7 bits (73), Expect = 0.006
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 81 KVFPCPVCGKEFSRPDKMKNHMKT 104
K +PC +CG F +K+H++
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRI 33
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 34.8 bits (79), Expect = 0.006
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 83 FPCPVCGKEFSRPDKMKNHMKTVH 106
+ C VC FS + H+++ H
Sbjct: 117 YVCNVCNARFSTMSALSEHLRSDH 140
Score = 31.3 bits (70), Expect = 0.096
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 55 FPCPVCGKEFSRPDKMKNHMKT 76
+ C VC FS + H+++
Sbjct: 117 YVCNVCNARFSTMSALSEHLRS 138
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 34.1 bits (77), Expect = 0.010
Identities = 7/61 (11%), Positives = 12/61 (19%)
Query: 47 HEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVH 106
S+ T + C VC P + H+ +
Sbjct: 145 SNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHG 204
Query: 107 D 107
Sbjct: 205 L 205
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 31.7 bits (73), Expect = 0.016
Identities = 18/49 (36%), Positives = 24/49 (48%)
Query: 53 KVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNH 101
K + C CGK FSR + H + K + C CGK FS+ + NH
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Score = 29.7 bits (68), Expect = 0.079
Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 18/60 (30%)
Query: 19 YKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQR-----KVFPCPVCGKEFSRPDKMKNH 73
Y C+EC K F +H QR K + C CGK FS+ + NH
Sbjct: 15 YGCVECG-----KAFSRSSILVQH--------QRVHTGEKPYKCLECGKAFSQNSGLINH 61
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 31.6 bits (71), Expect = 0.018
Identities = 10/53 (18%), Positives = 15/53 (28%), Gaps = 7/53 (13%)
Query: 52 RKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
+ C CG F T +RK C C K+ + +
Sbjct: 16 DRSQKCSKCGIIFI-------RRSTLSRRKTPMCEKCRKDSCQEAALNKDEGN 61
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 66
Score = 31.1 bits (70), Expect = 0.021
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 50 CQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCP-VCGKEFSRPDKMKNHMKT 104
++ PC C KEF D +++H C R CP CG + + H+K
Sbjct: 6 SGKRTQPCTYCTKEFVF-DTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKD 59
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 30.6 bits (68), Expect = 0.021
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 76 TGCQRKVFPCPVCGKEFSRPDKMKNHMKTVH 106
+G + + CPVC K FS +K+H+KT H
Sbjct: 3 SGSSGRSYSCPVCEKSFSEDRLIKSHIKTNH 33
Score = 28.3 bits (62), Expect = 0.14
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 49 GCQRKVFPCPVCGKEFSRPDKMKNHMKT 76
G + + CPVC K FS +K+H+KT
Sbjct: 4 GSSGRSYSCPVCEKSFSEDRLIKSHIKT 31
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 30.1 bits (67), Expect = 0.029
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 55 FPCPVCGKEFSRPDKMKNHMKTG 77
F CP C K F R D + H+KT
Sbjct: 3 FACPACPKRFMRSDALSKHIKTA 25
Score = 30.1 bits (67), Expect = 0.031
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 83 FPCPVCGKEFSRPDKMKNHMKT 104
F CP C K F R D + H+KT
Sbjct: 3 FACPACPKRFMRSDALSKHIKT 24
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 31.3 bits (70), Expect = 0.031
Identities = 9/64 (14%), Positives = 16/64 (25%), Gaps = 4/64 (6%)
Query: 47 HEGCQRKVFPCPVCGKEFSRPDKMKNHMKTG----CQRKVFPCPVCGKEFSRPDKMKNHM 102
+ C C + + H+ + + C C R D + H
Sbjct: 11 QNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHN 70
Query: 103 KTVH 106
H
Sbjct: 71 LKYH 74
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 66
Score = 30.6 bits (68), Expect = 0.034
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 54 VFPCPVCGKEFSRPDKMKNH 73
+ PC +CGK F+ ++++ H
Sbjct: 13 ILPCGLCGKVFTDANRLRQH 32
Score = 30.6 bits (68), Expect = 0.034
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 82 VFPCPVCGKEFSRPDKMKNH 101
+ PC +CGK F+ ++++ H
Sbjct: 13 ILPCGLCGKVFTDANRLRQH 32
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 29.9 bits (67), Expect = 0.034
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 55 FPCPVCGKEFSRPDKMKNHMKTGCQRK 81
F CP C K F R D + H+
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLG 29
Score = 29.5 bits (66), Expect = 0.044
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 83 FPCPVCGKEFSRPDKMKNHMKT 104
F CP C K F R D + H+
Sbjct: 3 FACPECPKRFMRSDHLSKHITL 24
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 29.9 bits (67), Expect = 0.044
Identities = 10/41 (24%), Positives = 14/41 (34%)
Query: 48 EGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVC 88
G RK C +CGK F + H + K +
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 28.8 bits (64), Expect = 0.093
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 75 KTGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
+G RK C +CGK F + H +
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLS 34
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 29.5 bits (66), Expect = 0.045
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 55 FPCPVCGKEFSRPDKMKNHMKTGCQRK 81
F CP C K F R D + H+ +K
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENKK 29
Score = 29.1 bits (65), Expect = 0.059
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 83 FPCPVCGKEFSRPDKMKNHMKT 104
F CP C K F R D + H+
Sbjct: 3 FACPECPKRFMRSDHLTLHILL 24
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 29.5 bits (65), Expect = 0.049
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 81 KVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQG 117
K + CPVCG F R D+M H+++ + G
Sbjct: 9 KPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG 45
Score = 29.5 bits (65), Expect = 0.059
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 53 KVFPCPVCGKEFSRPDKMKNHMKT 76
K + CPVCG F R D+M H+++
Sbjct: 9 KPYSCPVCGLRFKRKDRMSYHVRS 32
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.055
Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 15/93 (16%)
Query: 50 CQRKVFPCPVCGKEFSRPDKMKNHMK--TGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHD 107
V + G P ++++++K TG + + + S + K +
Sbjct: 247 AHYVVT-AKLLGF---TPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV 302
Query: 108 CFMPATTPQGQRGQRASPVIDF----HKDSVFN 136
F G R A P +DS+ N
Sbjct: 303 LFF-----IGVRCYEAYPNTSLPPSILEDSLEN 330
Score = 27.3 bits (60), Expect = 1.8
Identities = 23/142 (16%), Positives = 37/142 (26%), Gaps = 63/142 (44%)
Query: 1 M-SVRGLNLFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQ-RHAFLY-HEGCQRKVFPC 57
M S+ L V + + K N + + + G + V
Sbjct: 338 MLSISNLTQ---EQVQDYVNKT-------------NSHLPAGKQVEISLVNGAKNLV--- 378
Query: 58 PVCGKEFS--------RPDKMKNHMKTGC-QRKVFPCPVCGKEFSRPDKMKNHMKTVHDC 108
V G S R K +G Q ++ FS + K +
Sbjct: 379 -VSGPPQSLYGLNLTLR----KAKAPSGLDQSRI--------PFS---ERK---LKFSNR 419
Query: 109 FMPATTPQGQRGQRASPVIDFH 130
F+P +P FH
Sbjct: 420 FLPVASP-------------FH 428
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 29.1 bits (65), Expect = 0.060
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 81 KVFPCPVCGKEFSRPDKMKNHMKTVH 106
K + C +C + F+R D + H + +H
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIH 26
Score = 25.2 bits (55), Expect = 1.5
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 53 KVFPCPVCGKEFSRPDKMKNHMKT 76
K + C +C + F+R D + H +
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQK 24
>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain,
PRMT3, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.37.1.5
Length = 121
Score = 30.7 bits (69), Expect = 0.065
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 83 FPCPVCGKEFSRPDKMKNHMKTVHDC 108
PC C + F+ ++ +H K H
Sbjct: 16 TPCLFCDRLFASAEETFSHCKLEHQF 41
Score = 24.9 bits (54), Expect = 6.6
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 55 FPCPVCGKEFSRPDKMKNHMKT 76
PC C + F+ ++ +H K
Sbjct: 16 TPCLFCDRLFASAEETFSHCKL 37
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 29.7 bits (68), Expect = 0.069
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 53 KVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSR 94
+ + C CGK FS + H +T K + C CGK F +
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQ 58
Score = 29.7 bits (68), Expect = 0.074
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 18/53 (33%)
Query: 19 YKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQR-----KVFPCPVCGKEFSR 66
YKC EC K+F + +H +R K + C CGK F +
Sbjct: 19 YKCDECG-----KSFSHSSDLSKH--------RRTHTGEKPYKCDECGKAFIQ 58
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 28.4 bits (64), Expect = 0.13
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 53 KVFPC--PVCGKEFSRPDKMKNHMKTGCQRKVFPC 85
K F C P CG FSR D++ H ++ K
Sbjct: 11 KPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 28.4 bits (64), Expect = 0.14
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 72 NHMKTGCQRKVFPC--PVCGKEFSRPDKMKNHMKT 104
+ +G K F C P CG FSR D++ H ++
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRS 36
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 28.1 bits (63), Expect = 0.14
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 53 KVFPCPVCGKEFSRPDKMKNHMKT 76
+ F C VC + F+R + +K H ++
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRS 24
Score = 28.1 bits (63), Expect = 0.14
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 81 KVFPCPVCGKEFSRPDKMKNHMKT 104
+ F C VC + F+R + +K H ++
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRS 24
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 28.3 bits (63), Expect = 0.16
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 51 QRKVFPCPV--CGKEFSRPDKMKNHMKT 76
K F C C K F R +++H++T
Sbjct: 15 PDKTFECLFPGCTKTFKRRYNIRSHIQT 42
Score = 28.3 bits (63), Expect = 0.16
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 79 QRKVFPCPV--CGKEFSRPDKMKNHMKT 104
K F C C K F R +++H++T
Sbjct: 15 PDKTFECLFPGCTKTFKRRYNIRSHIQT 42
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP
ribose,, gene regulation; HET: ALY OAD; 1.50A
{Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A*
1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Length = 289
Score = 30.1 bits (68), Expect = 0.19
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 57 CPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPD 96
C CGK + P K+ + + C VCG E +P
Sbjct: 139 CIGCGKVYP-PQVFKSKLAEHPIKDFVKCDVCG-ELVKPA 176
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family;
enzyme-substrate complex, protein binding,
transcription; HET: ALY MES; 2.00A {Archaeoglobus
fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Length = 253
Score = 29.8 bits (68), Expect = 0.20
Identities = 7/40 (17%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 57 CPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPD 96
C C + + + +++ K ++ C CG + +P
Sbjct: 126 CLDCHETYDWSEFVEDFNKG----EIPRCRKCGSYYVKPR 161
>2ecw_A Tripartite motif-containing protein 30; metal binding protein,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 85
Score = 28.9 bits (65), Expect = 0.21
Identities = 11/52 (21%), Positives = 15/52 (28%), Gaps = 3/52 (5%)
Query: 54 VFPCPV---CGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHM 102
+ PV C F R N+ CPVC + + N
Sbjct: 28 LLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLH 79
Score = 28.5 bits (64), Expect = 0.23
Identities = 5/24 (20%), Positives = 7/24 (29%)
Query: 51 QRKVFPCPVCGKEFSRPDKMKNHM 74
CPVC + + N
Sbjct: 56 TDGKGNCPVCRVPYPFGNLKPNLH 79
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 29.8 bits (66), Expect = 0.23
Identities = 6/57 (10%), Positives = 14/57 (24%)
Query: 47 HEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMK 103
G +V+ K + H K + P+ ++ +
Sbjct: 173 RPGEWLRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIH 229
Score = 27.1 bits (59), Expect = 2.0
Identities = 4/39 (10%), Positives = 9/39 (23%), Gaps = 7/39 (17%)
Query: 52 RKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGK 90
K + P+ ++ + GK
Sbjct: 206 EKRLQREKSEQVLDNPEDLRGPIH-------LSVLRQGK 237
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain,
tripartite motif protein 34, interferon- responsive
finger protein 1; NMR {Homo sapiens}
Length = 79
Score = 28.4 bits (64), Expect = 0.27
Identities = 7/28 (25%), Positives = 8/28 (28%)
Query: 47 HEGCQRKVFPCPVCGKEFSRPDKMKNHM 74
CPVCG +S N
Sbjct: 46 AVTSMGGKSSCPVCGISYSFEHLQANQH 73
Score = 28.0 bits (63), Expect = 0.36
Identities = 7/24 (29%), Positives = 8/24 (33%)
Query: 79 QRKVFPCPVCGKEFSRPDKMKNHM 102
CPVCG +S N
Sbjct: 50 MGGKSSCPVCGISYSFEHLQANQH 73
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition,
kinase-INH complex, rubredoxin fold, TPR domain,
transferase; HET: AXX; 2.40A {Mycobacterium
tuberculosis}
Length = 681
Score = 29.4 bits (66), Expect = 0.33
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 6/43 (13%)
Query: 57 CPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMK 99
C CG+ R D G CP CG +S ++
Sbjct: 37 CWNCGRPVGRSDSETKGASEGW------CPYCGSPYSFLPQLN 73
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces
cerevisiae} SCOP: c.31.1.5
Length = 361
Score = 29.2 bits (65), Expect = 0.37
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 57 CPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPD 96
C CGK + P K+ + + C VCG E +P
Sbjct: 147 CIGCGKVYP-PQVFKSKLAEHPIKDFVKCDVCG-ELVKPA 184
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide
binding, hydrogenase maturation factor transferase;
HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A*
3ttf_A* 3ttd_A 3tsq_A
Length = 657
Score = 29.3 bits (66), Expect = 0.39
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 7/38 (18%)
Query: 53 KVFP-CPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCG 89
FP CP C KE+ P + H + CP CG
Sbjct: 65 AAFPLCPACDKEYRDPLDRRFHAQPVA------CPECG 96
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 27.2 bits (61), Expect = 0.43
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 53 KVFPCPVCGKEFSRPDKMKNHMKT 76
K F C CG FS + H+++
Sbjct: 11 KPFQCKECGMNFSWSCSLFKHLRS 34
Score = 27.2 bits (61), Expect = 0.43
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 81 KVFPCPVCGKEFSRPDKMKNHMKT 104
K F C CG FS + H+++
Sbjct: 11 KPFQCKECGMNFSWSCSLFKHLRS 34
>2ecv_A Tripartite motif-containing protein 5; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 27.6 bits (62), Expect = 0.47
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 75 KTGCQRKVFPCPVCGKEFSRPDKMKNHM 102
K+ + CPVC + + N
Sbjct: 52 KSMLDKGESSCPVCRISYQPENIRPNRH 79
Score = 27.6 bits (62), Expect = 0.49
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 51 QRKVFPCPVCGKEFSRPDKMKNHM 74
+ CPVC + + N
Sbjct: 56 DKGESSCPVCRISYQPENIRPNRH 79
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair,
sequence context; HET: DNA 08Q; 1.60A {Geobacillus
stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A*
3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A*
2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A*
3sar_A* 3sav_A* ...
Length = 273
Score = 28.6 bits (65), Expect = 0.51
Identities = 13/50 (26%), Positives = 17/50 (34%), Gaps = 12/50 (24%)
Query: 39 FQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVC 88
FQ H ++Y R+ PC CG + R CP C
Sbjct: 234 FQHHLYVYG----RQGNPCKRCGTPIEK-------TVVA-GRGTHYCPRC 271
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei
structure initiative; 2.00A {Nitrosomonas europaea atcc
19718}
Length = 189
Score = 28.5 bits (64), Expect = 0.58
Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 7/41 (17%)
Query: 57 CPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKE-FSRPD 96
C CG ++ + G + CP C + P
Sbjct: 6 CSQCGG------EVILRIPEGDTLPRYICPKCHTIHYQNPK 40
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE]
hydrogenase maturation, zinc-finger, nickel binding,
metal-binding; HET: FME; 2.30A {Pyrococcus
kodakaraensis} PDB: 3a44_A*
Length = 139
Score = 28.1 bits (62), Expect = 0.58
Identities = 9/44 (20%), Positives = 11/44 (25%), Gaps = 9/44 (20%)
Query: 57 CPVCGKEFSRPD---------KMKNHMKTGCQRKVFPCPVCGKE 91
C C E+ + K H CP CG
Sbjct: 73 CRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSH 116
Score = 27.3 bits (60), Expect = 1.3
Identities = 8/49 (16%), Positives = 14/49 (28%), Gaps = 1/49 (2%)
Query: 16 EGIYKCMECAK-VDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKE 63
E ++KC C + + + + CP CG
Sbjct: 68 EAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSH 116
>1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex,
single-stranded DNA, isomerase/DNA complex; HET: DNA;
2.05A {Escherichia coli} SCOP: e.10.1.1 PDB: 2o5c_A*
2o54_A* 2o59_A* 2o19_A* 2o5e_A* 1d6m_A*
Length = 659
Score = 28.7 bits (65), Expect = 0.62
Identities = 8/40 (20%), Positives = 11/40 (27%), Gaps = 3/40 (7%)
Query: 51 QRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGK 90
Q + P G K K + +K P G
Sbjct: 613 QFRGIVAPGSGGSAD---KKKAAPRKRSAKKSPPADEVGS 649
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of
[NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET:
APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB:
3vti_A
Length = 761
Score = 28.6 bits (64), Expect = 0.64
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 7/38 (18%)
Query: 53 KVFP-CPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCG 89
KVFP C C +E+ P + H + C CG
Sbjct: 159 KVFPMCEKCSREYHDPHDRRFHAQPVA------CFDCG 190
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 26.3 bits (59), Expect = 0.66
Identities = 6/32 (18%), Positives = 12/32 (37%)
Query: 73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
+ K + C CG F + ++ H+
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLI 33
Score = 25.9 bits (58), Expect = 0.88
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 53 KVFPCPVCGKEFSRPDKMKNHMKT 76
K + C CG F + ++ H+
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLI 33
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 26.0 bits (58), Expect = 0.70
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 53 KVFPCPV--CGKEFSRPDKMKNHMKT 76
+ F C CGK F+R D+++ H +T
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRT 26
Score = 26.0 bits (58), Expect = 0.70
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 81 KVFPCPV--CGKEFSRPDKMKNHMKT 104
+ F C CGK F+R D+++ H +T
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRT 26
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns
helix, riken STR genomics/proteomics initiative, RSGI,
structural genomics; 1.90A {Thermus thermophilus} SCOP:
a.156.1.2 b.113.1.1 g.39.1.8
Length = 266
Score = 27.9 bits (63), Expect = 0.91
Identities = 14/50 (28%), Positives = 17/50 (34%), Gaps = 12/50 (24%)
Query: 39 FQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVC 88
FQ +Y R+ PCP CG+ R R CP C
Sbjct: 224 FQTRHAVY----GREGLPCPACGRPVER-------RVVA-GRGTHFCPTC 261
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger;
NMR {Homo sapiens} SCOP: g.41.3.1
Length = 62
Score = 26.4 bits (58), Expect = 0.92
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 69 KMKNHMKTGCQRKVFPCPVCGKEFS 93
+++ + R F CPVC F+
Sbjct: 1 RIETDERDSTNRASFKCPVCSSTFT 25
Score = 24.1 bits (52), Expect = 8.0
Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 52 RKVFPCPVCGKEFSRPDKMKN-HMKTGCQRKVFPCPVCGKE 91
R F CPVC F+ + + TG F C C E
Sbjct: 12 RASFKCPVCSSTFTDLEANQLFDPMTG----TFRCTFCHTE 48
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex,
phosphoesterase fold, OB fold, zinc-binding motif, DNA
replication; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Length = 206
Score = 28.1 bits (62), Expect = 0.94
Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
Query: 50 CQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMK 103
CP C K F + + C C + F+ P ++ + ++
Sbjct: 18 TVTLELSCPSCDKRFPFGGIVSS-NYYRVSYNGLQCKHCEQLFT-PLQLTSQIE 69
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 43
Score = 26.0 bits (56), Expect = 0.99
Identities = 8/31 (25%), Positives = 9/31 (29%)
Query: 76 TGCQRKVFPCPVCGKEFSRPDKMKNHMKTVH 106
F C C FS +K H H
Sbjct: 4 GSSGNGAFFCNECDCRFSEEASLKRHTLQTH 34
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA
repair, beta sandwich, zinc finger, helix two-turns
helix, hydrolase/DNA complex; HET: PED; 2.10A
{Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Length = 268
Score = 27.8 bits (63), Expect = 1.2
Identities = 16/64 (25%), Positives = 20/64 (31%), Gaps = 18/64 (28%)
Query: 30 IKTFKNKY----SFQRHAFLY-HEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFP 84
+K F F + +Y +G PC VCG K QR F
Sbjct: 216 LKDFLQSDGKPGYFAQELQVYGRKGE-----PCRVCGTPIVA-------TKHA-QRATFY 262
Query: 85 CPVC 88
C C
Sbjct: 263 CRQC 266
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 27.9 bits (61), Expect = 1.3
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 57 CPVCGKEFSRPDKMKNHMKT 76
CP C + F ++H+
Sbjct: 295 CPFCSRWFKTSSVFESHLVG 314
Score = 27.9 bits (61), Expect = 1.3
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 85 CPVCGKEFSRPDKMKNHMKT 104
CP C + F ++H+
Sbjct: 295 CPFCSRWFKTSSVFESHLVG 314
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein
of testis, proliferation potential-related protein,
protein P2P-R; NMR {Homo sapiens}
Length = 74
Score = 26.2 bits (58), Expect = 1.4
Identities = 8/56 (14%), Positives = 14/56 (25%), Gaps = 9/56 (16%)
Query: 55 FPCPVCGKEFSRPDKMKNHMKTGCQ---------RKVFPCPVCGKEFSRPDKMKNH 101
C +C + + + C CP C + PD +
Sbjct: 16 LLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP 71
Score = 25.1 bits (55), Expect = 4.1
Identities = 5/23 (21%), Positives = 8/23 (34%)
Query: 51 QRKVFPCPVCGKEFSRPDKMKNH 73
+ CP C + PD +
Sbjct: 49 ESDEHTCPTCHQNDVSPDALSGP 71
>1tdh_A NEI endonuclease VIII-like 1; helix two turns helix, zinc-LESS
finger, hydrolase; 2.10A {Homo sapiens} SCOP: a.156.1.2
b.113.1.1 g.39.1.8
Length = 364
Score = 27.6 bits (61), Expect = 1.5
Identities = 7/42 (16%), Positives = 10/42 (23%), Gaps = 8/42 (19%)
Query: 56 PCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDK 97
P P+ K K + P E + P
Sbjct: 285 PGPLAPKGRKSRKKK--------SKATQLSPEDRVEDALPPS 318
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA
complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA
6MA; 2.05A {Streptococcus pneumoniae}
Length = 257
Score = 27.2 bits (60), Expect = 1.8
Identities = 15/53 (28%), Positives = 19/53 (35%), Gaps = 6/53 (11%)
Query: 55 FPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHD 107
CP CG NH + F C C +EF K N T++D
Sbjct: 35 SYCPNCGN------NPLNHFENNRPVADFYCNHCSEEFELKSKKGNFSSTIND 81
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 73
Score = 25.8 bits (56), Expect = 1.8
Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 10/56 (17%)
Query: 46 YHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNH 101
YH C C CG+ F+ ++M Q P C + D +
Sbjct: 27 YHPSC----ALCVRCGQMFAEGEEMYL------QGSSIWHPACRQAARTEDSGPSS 72
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 2.1
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 53 KVFPCPVCGKEFSRPDKMKNHMKT 76
+ + C CGK F R + H+K
Sbjct: 11 RPYGCNECGKNFGRHSHLIEHLKR 34
Score = 25.2 bits (56), Expect = 2.1
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 81 KVFPCPVCGKEFSRPDKMKNHMKT 104
+ + C CGK F R + H+K
Sbjct: 11 RPYGCNECGKNFGRHSHLIEHLKR 34
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET:
VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A*
1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A
1pjj_A*
Length = 271
Score = 27.1 bits (61), Expect = 2.1
Identities = 12/50 (24%), Positives = 16/50 (32%), Gaps = 12/50 (24%)
Query: 39 FQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVC 88
Q +Y + C CG E + +K R CPVC
Sbjct: 231 MQNELQVY----GKTGEKCSRCGAEIQK-------IKVA-GRGTHFCPVC 268
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 112
Score = 26.2 bits (58), Expect = 2.4
Identities = 3/24 (12%), Positives = 11/24 (45%)
Query: 51 QRKVFPCPVCGKEFSRPDKMKNHM 74
++ CP+C + ++ ++
Sbjct: 55 KKGPSQCPLCKNDITKRSLQESTR 78
Score = 26.2 bits (58), Expect = 2.4
Identities = 3/24 (12%), Positives = 11/24 (45%)
Query: 79 QRKVFPCPVCGKEFSRPDKMKNHM 102
++ CP+C + ++ ++
Sbjct: 55 KKGPSQCPLCKNDITKRSLQESTR 78
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 24.8 bits (53), Expect = 2.5
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 49 GCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRK 81
G K+F C C K F ++ H++ K
Sbjct: 4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 24.0 bits (51), Expect = 4.7
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 76 TGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
+G K+F C C K F ++ H++
Sbjct: 3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRI 31
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA;
metallochaperone, metal-binding, metal- binding
protein; NMR {Helicobacter pylori}
Length = 119
Score = 25.9 bits (57), Expect = 2.8
Identities = 5/33 (15%), Positives = 5/33 (15%), Gaps = 11/33 (33%)
Query: 57 CPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCG 89
C C F C C
Sbjct: 76 CKDCSHVFKPN-----------ALDYGVCEKCH 97
>1xjt_A Lysozyme; open conformation, hydrolase; HET: CIT; 1.75A
{Enterobacteria phage P1} SCOP: d.2.1.3
Length = 191
Score = 26.3 bits (57), Expect = 3.2
Identities = 9/75 (12%), Positives = 16/75 (21%), Gaps = 7/75 (9%)
Query: 46 YHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTV 105
EGC+R + CP + T + + +
Sbjct: 40 NAEGCRRDPYMCPAG-----VWTDGIGN--THGVTPGVRKTDQQIAADWEKNILIAERCI 92
Query: 106 HDCFMPATTPQGQRG 120
+ F P
Sbjct: 93 NQHFRGKDMPDNAFS 107
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 24.4 bits (52), Expect = 3.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 53 KVFPCPVCGKEFSRPDKMKNHMK 75
+ + C VCGK FS +M+ H +
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYR 24
Score = 24.4 bits (52), Expect = 3.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 81 KVFPCPVCGKEFSRPDKMKNHMK 103
+ + C VCGK FS +M+ H +
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYR 24
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein
trafficking, hydrolase AC; 2.40A {Plasmodium falciparum
3D7}
Length = 163
Score = 26.1 bits (57), Expect = 3.8
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 10 RYASVTEGIYKCMECA 25
+ SV GI+ C+ C+
Sbjct: 34 DWVSVNHGIFLCINCS 49
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 24.4 bits (54), Expect = 4.0
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 72 NHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVH 106
+ +G +K + C CGK F + + H + H
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYH 36
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function,
zinc finger, metal-binding protein, structural
genomics; NMR {Mus musculus} SCOP: g.41.3.4
Length = 85
Score = 25.4 bits (55), Expect = 4.0
Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 53 KVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRP 95
F CP C E S KM TG V C VC +EF P
Sbjct: 22 TQFTCPFCNHEKSCDVKMDRARNTG----VISCTVCLEEFQTP 60
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction,
transcription; NMR {Drosophila melanogaster} SCOP:
g.37.1.2 PDB: 1y0j_B 2l6z_B
Length = 36
Score = 24.3 bits (52), Expect = 4.1
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 55 FPCPVCGKEFSRPDKMKNHMKTGCQRKV 82
F C CG FS P ++ H C ++
Sbjct: 9 FMCLPCGIAFSSPSTLEAHQAYYCSHRI 36
>2e72_A POGO transposable element with ZNF domain; zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 49
Score = 24.4 bits (52), Expect = 4.2
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 57 CPVCGKEFSRPDKMKNHMKTGC 78
CP C +F + ++ HM C
Sbjct: 15 CPRCNAQFRVTEALRGHMCYCC 36
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3;
arfgap domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 149
Score = 25.7 bits (56), Expect = 4.3
Identities = 6/18 (33%), Positives = 13/18 (72%)
Query: 10 RYASVTEGIYKCMECAKV 27
+AS+T G++ C++C+
Sbjct: 41 SWASITYGVFLCIDCSGS 58
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue;
Zn-binding domain, rossmann fold domain; HET: MYK NAD;
2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Length = 290
Score = 26.1 bits (58), Expect = 4.4
Identities = 9/40 (22%), Positives = 12/40 (30%), Gaps = 2/40 (5%)
Query: 57 CPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPD 96
C C K M + P CG F +P+
Sbjct: 157 CCTCNKIVKLNKIMLQKTSHFMHQLP-PECPCGGIF-KPN 194
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; NMR {Pyrococcus furiosus}
Length = 95
Score = 25.4 bits (55), Expect = 4.5
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 15/51 (29%)
Query: 57 CPVCGKEFSRPDKMKNHMKTGCQRK---------------VFPCPVCGKEF 92
CP+CG + ++ + + VF CPVCG+EF
Sbjct: 11 CPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEF 61
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 26.0 bits (57), Expect = 4.6
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 11 YASVTEGIYKCMECA 25
+ SVT GI+ C+EC+
Sbjct: 50 WVSVTYGIWICLECS 64
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 24.0 bits (52), Expect = 5.0
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 72 NHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
+ +G F C C + F++ + + H +T
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERT 34
>2owa_A Arfgap-like finger domain containing protein; zinc finger
protein, cysteine-rich motif, GTPase activation; 2.00A
{Cryptosporidium parvum iowa II}
Length = 138
Score = 25.6 bits (56), Expect = 5.0
Identities = 3/16 (18%), Positives = 10/16 (62%)
Query: 10 RYASVTEGIYKCMECA 25
+ S++ ++ C+ C+
Sbjct: 48 TWLSLSFAVFICLNCS 63
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein,
REV-interacting protein, human immunodeficiency virus,
AIDS, structural genomics; 1.48A {Homo sapiens} PDB:
2d9l_A
Length = 140
Score = 25.5 bits (56), Expect = 5.0
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 10 RYASVTEGIYKCMECA 25
Y ++T G + C C+
Sbjct: 37 TYVNMTVGSFVCTSCS 52
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 23.9 bits (52), Expect = 5.1
Identities = 6/27 (22%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 52 RKVFPCPV--CGKEFSRPDKMKNHMKT 76
+K C + CGK + + ++ H++
Sbjct: 6 KKQHICHIQGCGKVYGKTSHLRAHLRW 32
Score = 23.9 bits (52), Expect = 5.1
Identities = 6/27 (22%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 80 RKVFPCPV--CGKEFSRPDKMKNHMKT 104
+K C + CGK + + ++ H++
Sbjct: 6 KKQHICHIQGCGKVYGKTSHLRAHLRW 32
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 35
Score = 24.0 bits (51), Expect = 5.1
Identities = 7/24 (29%), Positives = 16/24 (66%)
Query: 83 FPCPVCGKEFSRPDKMKNHMKTVH 106
+ C +C K+F ++++H++ VH
Sbjct: 8 YVCALCLKKFVSSIRLRSHIREVH 31
>2e2d_C TIMP-2, metalloproteinase inhibitor 2; matrix
metalloproteinase/MMP, collagenase, tissue inhibitor of
metalloproteinases/TIMP, complex, flexibility; 2.00A
{Bos taurus} SCOP: b.40.3.1 PDB: 1bqq_T 1buv_T 1br9_A
1gxd_C 2tmp_A
Length = 180
Score = 25.6 bits (55), Expect = 5.2
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 8/54 (14%)
Query: 40 QRHAF--LYHEGCQRKVFPCPVCGKEFSRP------DKMKNHMKTGCQRKVFPC 85
Q+ + Y GC+ K+ CP+ S P D + G Q K F C
Sbjct: 114 QKKSLNHRYQMGCECKITRCPMIPCYISSPDECLWMDWVTEKNINGHQAKFFAC 167
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU
PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1
g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A
2opf_A* 1q3b_A*
Length = 262
Score = 25.6 bits (57), Expect = 5.3
Identities = 8/33 (24%), Positives = 10/33 (30%), Gaps = 8/33 (24%)
Query: 56 PCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVC 88
PC CG + R + CP C
Sbjct: 236 PCERCGSIIEK-------TTLS-SRPFYWCPGC 260
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural
genomics, structural genomics consortium, SGC, metal
binding protein; 1.80A {Homo sapiens}
Length = 144
Score = 25.7 bits (56), Expect = 5.3
Identities = 7/18 (38%), Positives = 14/18 (77%)
Query: 10 RYASVTEGIYKCMECAKV 27
+AS+T G++ C++C+ V
Sbjct: 49 SWASITYGVFLCIDCSGV 66
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP,
structural genomics consorti ER-golgi transport, golgi
apparatus, GTPase activation; 2.40A {Homo sapiens}
Length = 147
Score = 25.6 bits (56), Expect = 5.5
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 10 RYASVTEGIYKCMECAKV 27
++ SVT GI+ C+EC+
Sbjct: 50 QWVSVTYGIWICLECSGR 67
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex,
restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE;
1.50A {Helicobacter pylori} PDB: 3fc3_A*
Length = 200
Score = 25.6 bits (55), Expect = 5.6
Identities = 13/74 (17%), Positives = 19/74 (25%), Gaps = 5/74 (6%)
Query: 19 YKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHM---- 74
C + S ++ + VF CP+C K
Sbjct: 102 TTRPSCRECRKNIDGVKLSSTEKKKMDEIAPPKGSVFTCPICEKRSIVGVTANLVHDHNH 161
Query: 75 KTGCQRKVFPCPVC 88
TG R+ C C
Sbjct: 162 DTGWGREWI-CDSC 174
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC
AMP; 2.30A {Escherichia coli}
Length = 671
Score = 25.9 bits (58), Expect = 6.2
Identities = 9/17 (52%), Positives = 11/17 (64%), Gaps = 2/17 (11%)
Query: 54 VFP--CPVCGKEFSRPD 68
VFP CPVCG + R +
Sbjct: 403 VFPTHCPVCGSDVERVE 419
Score = 25.9 bits (58), Expect = 6.2
Identities = 9/17 (52%), Positives = 11/17 (64%), Gaps = 2/17 (11%)
Query: 82 VFP--CPVCGKEFSRPD 96
VFP CPVCG + R +
Sbjct: 403 VFPTHCPVCGSDVERVE 419
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2
zinc fingers, beta-BETA-alpha, solution structure; NMR
{Saccharomyces cerevisiae}
Length = 64
Score = 24.2 bits (52), Expect = 6.3
Identities = 8/56 (14%), Positives = 15/56 (26%), Gaps = 9/56 (16%)
Query: 60 CGKEFSRPDKMKNHM-------KTGCQRKVFPC--PVCGKEFSRPDKMKNHMKTVH 106
C + S ++ H+ + C C + NH+ H
Sbjct: 9 CPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH 64
>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding
domain, angiogenesis, developmental protein,
differentiation; HET: NAG FUC; 2.00A {Homo sapiens}
SCOP: b.18.1.2 b.18.1.2 b.23.1.1
Length = 450
Score = 25.8 bits (56), Expect = 6.5
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 30 IKTFKNKYSFQRHAFL-YHEGCQRKVFPCP 58
+KT+K S ++ EG + +F
Sbjct: 219 VKTYKIDVSSNGEDWITIKEGNKPVLFQGN 248
>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived
antibody, developmental protein, differentiation,
glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A
Length = 579
Score = 25.7 bits (56), Expect = 7.0
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 30 IKTFKNKYSFQRHAF-LYHEGCQRKVFPCP 58
+K++K + S + +Y G KVF
Sbjct: 336 VKSYKLEVSTNGEDWMVYRHGKNHKVFQAN 365
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing,
mRNA splicing; NMR {Homo sapiens}
Length = 92
Score = 24.3 bits (53), Expect = 7.6
Identities = 8/58 (13%), Positives = 14/58 (24%), Gaps = 21/58 (36%)
Query: 57 CPVCGKEFSRPDKMKNHMKTGC---------------QRKVFPCPVCGKEFSRPDKMK 99
C +C + + C + CP C + PD +
Sbjct: 16 CLICKDIMTDA------VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALI 67
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein
complex, bromodomain, transcription, transcr regulation,
chromatin regulator, transcription-C complex; 3.30A
{Homo sapiens}
Length = 292
Score = 25.4 bits (55), Expect = 8.0
Identities = 11/89 (12%), Positives = 20/89 (22%), Gaps = 1/89 (1%)
Query: 14 VTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNH 73
V + +Y E + + KN ++ + Q + C KE
Sbjct: 97 VRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEKEDKLARLEK 156
Query: 74 MKTGCQRKVFPCPVCGKEFSRP-DKMKNH 101
+ KM
Sbjct: 157 AINPLLDDDDQVAFSFILDNIVTQKMMAV 185
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 25.0 bits (54), Expect = 8.1
Identities = 9/33 (27%), Positives = 11/33 (33%), Gaps = 7/33 (21%)
Query: 57 CPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCG 89
CP C P K+ G C +CG
Sbjct: 24 CPECK---VYPPKIVERFSEG----DVVCALCG 49
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A
{Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A*
3fnu_A*
Length = 451
Score = 25.5 bits (56), Expect = 8.1
Identities = 11/80 (13%), Positives = 21/80 (26%), Gaps = 8/80 (10%)
Query: 26 KVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPC 85
+V +K + K F+ VF G + + +
Sbjct: 25 RVTKVKRWNAKRLFKILFVT--------VFIVLAGGFSYYIFENFVFQKNRKINHIIKTS 76
Query: 86 PVCGKEFSRPDKMKNHMKTV 105
F+ + MKT+
Sbjct: 77 KYSTVGFNIENSYDRLMKTI 96
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 141
Score = 24.8 bits (54), Expect = 8.5
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 10 RYASVTEGIYKCMECAKV 27
R+AS G++ C+ CA +
Sbjct: 41 RWASWNIGVFICIRCAGI 58
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA
repair, ring finger domain, metal binding, DNA
replication; 1.75A {Homo sapiens}
Length = 124
Score = 24.9 bits (54), Expect = 8.5
Identities = 14/65 (21%), Positives = 19/65 (29%), Gaps = 20/65 (30%)
Query: 52 RKVFPCPVCGKEFSRPDKMKNHMKTGCQ-------------RKVFPCPVCGKEFS-RPDK 97
+ F C C + RP + T CQ +VF CP C +
Sbjct: 50 EETFQCICCQELVFRP------ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAM 103
Query: 98 MKNHM 102
N
Sbjct: 104 QVNQP 108
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 117
Score = 24.5 bits (53), Expect = 9.2
Identities = 10/51 (19%), Positives = 11/51 (21%), Gaps = 5/51 (9%)
Query: 57 CPVCGKEFSRPDKMKNHMKTGCQ---RKVF--PCPVCGKEFSRPDKMKNHM 102
C C P + C CPVC D N
Sbjct: 25 CSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQ 75
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.138 0.454
Gapped
Lambda K H
0.267 0.0436 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,049,247
Number of extensions: 108240
Number of successful extensions: 1291
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1053
Number of HSP's successfully gapped: 421
Length of query: 139
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 55
Effective length of database: 4,356,429
Effective search space: 239603595
Effective search space used: 239603595
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.5 bits)