RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7353
(139 letters)
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 40.4 bits (94), Expect = 2e-06
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 53 KVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
K++PC CGK F+ + HM + + C VCGK+F + HMK
Sbjct: 2 KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI 52
Score = 32.7 bits (74), Expect = 0.001
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 9/58 (15%)
Query: 19 YKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKT 76
Y C +C K +F +K RH ++ C VCGK+F + HMK
Sbjct: 4 YPC-QCGK-----SFTHKSQRDRHMSMHLGLRPYG---CGVCGKKFKMKHHLVGHMKI 52
>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger
peptide) {Drosophila melanogaster [TaxId: 7227]}
Length = 26
Score = 34.6 bits (79), Expect = 2e-04
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 82 VFPCPVCGKEFSRPDKMKNHMKTVH 106
V+PCP C KEF+R D M H+K +H
Sbjct: 1 VYPCPFCFKEFTRKDNMTAHVKIIH 25
Score = 31.6 bits (71), Expect = 0.003
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 54 VFPCPVCGKEFSRPDKMKNHMK 75
V+PCP C KEF+R D M H+K
Sbjct: 1 VYPCPFCFKEFTRKDNMTAHVK 22
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 31.2 bits (71), Expect = 0.004
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 81 KVFPCPVCGKEFSRPDKMKNHMKTVHD 107
K + C C K F + + H K HD
Sbjct: 7 KPYACSHCDKTFRQKQLLDMHFKRYHD 33
Score = 28.9 bits (65), Expect = 0.030
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 53 KVFPCPVCGKEFSRPDKMKNHMKT 76
K + C C K F + + H K
Sbjct: 7 KPYACSHCDKTFRQKQLLDMHFKR 30
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 31.1 bits (71), Expect = 0.004
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 81 KVFPCPVCGKEFSRPDKMKNHMKTVH 106
K + C +C F++ MK H+ H
Sbjct: 7 KPYECYICHARFTQSGTMKMHILQKH 32
Score = 27.3 bits (61), Expect = 0.091
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 53 KVFPCPVCGKEFSRPDKMKNHMKT 76
K + C +C F++ MK H+
Sbjct: 7 KPYECYICHARFTQSGTMKMHILQ 30
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 31.1 bits (71), Expect = 0.004
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 81 KVFPCPVCGKEFSRPDKMKNHMKTVH 106
K + C CGK FSRPD + H+K VH
Sbjct: 4 KPYICQSCGKGFSRPDHLNGHIKQVH 29
Score = 27.7 bits (62), Expect = 0.091
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 53 KVFPCPVCGKEFSRPDKMKNHMK 75
K + C CGK FSRPD + H+K
Sbjct: 4 KPYICQSCGKGFSRPDHLNGHIK 26
Score = 23.4 bits (51), Expect = 2.9
Identities = 9/41 (21%), Positives = 10/41 (24%), Gaps = 7/41 (17%)
Query: 19 YKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPV 59
Y C C K F H H + C V
Sbjct: 6 YICQSCGK-----GFSRPDHLNGHIKQVHTS--ERPHKCQV 39
>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 53
Score = 30.7 bits (69), Expect = 0.007
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 54 VFPCPVCGKEFSRPDKMKNH 73
+ PC +CGK F+ ++++ H
Sbjct: 6 ILPCGLCGKVFTDANRLRQH 25
Score = 30.7 bits (69), Expect = 0.007
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 82 VFPCPVCGKEFSRPDKMKNH 101
+ PC +CGK F+ ++++ H
Sbjct: 6 ILPCGLCGKVFTDANRLRQH 25
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 29.5 bits (67), Expect = 0.014
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 53 KVFPCPVCGKEFSRPDKMKNHMKT 76
K + C CGK FSR + H +
Sbjct: 6 KPYGCVECGKAFSRSSILVQHQRV 29
Score = 29.5 bits (67), Expect = 0.014
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 81 KVFPCPVCGKEFSRPDKMKNHMKT 104
K + C CGK FSR + H +
Sbjct: 6 KPYGCVECGKAFSRSSILVQHQRV 29
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 29.5 bits (67), Expect = 0.015
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 53 KVFPCPVCGKEFSRPDKMKNHMKT 76
+ F C VC + F+R + +K H ++
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRS 24
Score = 29.5 bits (67), Expect = 0.015
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 81 KVFPCPVCGKEFSRPDKMKNHMKT 104
+ F C VC + F+R + +K H ++
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRS 24
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 28.7 bits (65), Expect = 0.028
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 53 KVFPCPVCGKEFSRPDKMKNHMKT 76
K F C +C + FSR D + H++T
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRT 25
Score = 28.7 bits (65), Expect = 0.028
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 81 KVFPCPVCGKEFSRPDKMKNHMKT 104
K F C +C + FSR D + H++T
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRT 25
>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 121
Score = 30.2 bits (68), Expect = 0.035
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 84 PCPVCGKEFSRPDKMKNHMKTVHDC 108
PC C + F+ ++ +H K H
Sbjct: 17 PCLFCDRLFASAEETFSHCKLEHQF 41
Score = 25.6 bits (56), Expect = 1.7
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 56 PCPVCGKEFSRPDKMKNHMKT 76
PC C + F+ ++ +H K
Sbjct: 17 PCLFCDRLFASAEETFSHCKL 37
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 28.1 bits (63), Expect = 0.045
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 53 KVFPCPVCGKEFSRPDKMKNHMKT 76
K F CP C K F R D + H+KT
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKT 24
Score = 28.1 bits (63), Expect = 0.045
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 81 KVFPCPVCGKEFSRPDKMKNHMKT 104
K F CP C K F R D + H+KT
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKT 24
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 27.7 bits (61), Expect = 0.057
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 57 CPVCGKEFSRPDKMKNHMKT 76
C VCGK FSR DK+K HM+
Sbjct: 4 CEVCGKCFSRKDKLKTHMRC 23
Score = 27.7 bits (61), Expect = 0.057
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 85 CPVCGKEFSRPDKMKNHMKT 104
C VCGK FSR DK+K HM+
Sbjct: 4 CEVCGKCFSRKDKLKTHMRC 23
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 27.7 bits (61), Expect = 0.074
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 53 KVFPCPVCGKEFSRPDKMKNHMKT 76
K + CPVCG F R D+M H+++
Sbjct: 2 KPYSCPVCGLRFKRKDRMSYHVRS 25
Score = 27.7 bits (61), Expect = 0.074
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 81 KVFPCPVCGKEFSRPDKMKNHMKT 104
K + CPVCG F R D+M H+++
Sbjct: 2 KPYSCPVCGLRFKRKDRMSYHVRS 25
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 35
Score = 27.4 bits (61), Expect = 0.089
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 53 KVFPCPVCGKEFSRPDKMKNHMKT 76
+ F C +C F+ H+K
Sbjct: 6 RPFVCRICLSAFTTKANCARHLKV 29
Score = 27.4 bits (61), Expect = 0.089
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 81 KVFPCPVCGKEFSRPDKMKNHMKT 104
+ F C +C F+ H+K
Sbjct: 6 RPFVCRICLSAFTTKANCARHLKV 29
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 27.4 bits (61), Expect = 0.089
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
+ K F CP C + FSR D + H K
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR 33
Score = 26.6 bits (59), Expect = 0.18
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 53 KVFPCPVCGKEFSRPDKMKNHMKT 76
K F CP C + FSR D + H K
Sbjct: 10 KPFQCPDCDRSFSRSDHLALHRKR 33
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 27.5 bits (61), Expect = 0.089
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 53 KVFPCPVCGKEFSRPDKMKNHMKT 76
K F C +CG++F+R D+ K H K
Sbjct: 2 KPFACDICGRKFARSDERKRHTKI 25
Score = 27.5 bits (61), Expect = 0.089
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 81 KVFPCPVCGKEFSRPDKMKNHMKT 104
K F C +CG++F+R D+ K H K
Sbjct: 2 KPFACDICGRKFARSDERKRHTKI 25
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 27.4 bits (61), Expect = 0.096
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
+R+ + C CGK FS + H +T
Sbjct: 3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRT 34
Score = 23.6 bits (51), Expect = 2.4
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 53 KVFPCPVCGKEFSRPDKMKNHMKT 76
+ + C CGK FS + H +T
Sbjct: 11 RRYKCDECGKSFSHSSDLSKHRRT 34
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 26.9 bits (60), Expect = 0.14
Identities = 8/26 (30%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 53 KVFPCPV--CGKEFSRPDKMKNHMKT 76
+ + CP C K+F++ +K+H+ T
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILT 26
Score = 26.9 bits (60), Expect = 0.14
Identities = 8/26 (30%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 81 KVFPCPV--CGKEFSRPDKMKNHMKT 104
+ + CP C K+F++ +K+H+ T
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILT 26
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 31
Score = 26.7 bits (59), Expect = 0.15
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 83 FPCPVCGKEFSRPDKMKNHMKTVH 106
+PC +C + F+R D + H + +H
Sbjct: 2 YPCGLCNRAFTRRDLLIRHAQKIH 25
Score = 24.0 bits (52), Expect = 1.6
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 55 FPCPVCGKEFSRPDKMKNH 73
+PC +C + F+R D + H
Sbjct: 2 YPCGLCNRAFTRRDLLIRH 20
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 26.1 bits (58), Expect = 0.28
Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 53 KVFPCPV--CGKEFSRPDKMKNHMKT 76
+ + C C K F R + H K+
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKS 27
Score = 26.1 bits (58), Expect = 0.28
Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 81 KVFPCPV--CGKEFSRPDKMKNHMKT 104
+ + C C K F R + H K+
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKS 27
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 26.4 bits (58), Expect = 0.28
Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 66 RPDKMKNHMK-TGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
+ ++K + P C K F R +++H++T
Sbjct: 3 PRGSIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQT 42
Score = 24.1 bits (52), Expect = 1.8
Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 36 KYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKT 76
+ S ++ + + P C K F R +++H++T
Sbjct: 4 RGSIDKY--VKEMPDKTFECLFPGCTKTFKRRYNIRSHIQT 42
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 25.8 bits (57), Expect = 0.32
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 56 PCPVCGKEFSRPDKMKNHMKTGCQRKVFPC 85
P P CGK F+ +K HMK + + C
Sbjct: 5 PEPACGKSFNFKKHLKEHMKLHSDTRDYIC 34
Score = 24.3 bits (53), Expect = 1.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 84 PCPVCGKEFSRPDKMKNHMKT 104
P P CGK F+ +K HMK
Sbjct: 5 PEPACGKSFNFKKHLKEHMKL 25
>d1wiia_ g.41.3.4 (A:) Hypothetical UPF0222 protein MGC4549 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 85
Score = 27.0 bits (60), Expect = 0.34
Identities = 15/41 (36%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 53 KVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFS 93
F CP C E S KM TG C VC +EF
Sbjct: 22 TQFTCPFCNHEKSCDVKMDRARNTGVIS----CTVCLEEFQ 58
>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor,
different fingers {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 36
Score = 25.0 bits (54), Expect = 0.67
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 55 FPCPVCGKEFSRPDKMKNHMKTGCQRKV 82
F C CG FS P ++ H C ++
Sbjct: 9 FMCLPCGIAFSSPSTLEAHQAYYCSHRI 36
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 37
Score = 25.1 bits (55), Expect = 0.70
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 53 KVFPCPVCGKEFSRPDKMKNHMK 75
+ + C C +EF + HM
Sbjct: 4 RSYTCSFCKREFRSAQALGGHMN 26
Score = 25.1 bits (55), Expect = 0.70
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 81 KVFPCPVCGKEFSRPDKMKNHMK 103
+ + C C +EF + HM
Sbjct: 4 RSYTCSFCKREFRSAQALGGHMN 26
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 25.2 bits (55), Expect = 0.92
Identities = 8/42 (19%), Positives = 12/42 (28%), Gaps = 3/42 (7%)
Query: 57 CPVCGKEFSRPDKMK-NHM--KTGCQRKVFPCPVCGKEFSRP 95
C C E P + H + CP+C +
Sbjct: 9 CQQCQAEAKCPKLLPCLHTLCSGCLEASGMQCPICQAPWPLG 50
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 25.0 bits (55), Expect = 1.1
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 55 FPCPVCGKEFSRPDKMKNHMKT 76
C C + F +K H ++
Sbjct: 16 HRCLACARYFIDSTNLKTHFRS 37
Score = 25.0 bits (55), Expect = 1.1
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 83 FPCPVCGKEFSRPDKMKNHMKT 104
C C + F +K H ++
Sbjct: 16 HRCLACARYFIDSTNLKTHFRS 37
Score = 24.3 bits (53), Expect = 2.2
Identities = 6/27 (22%), Positives = 14/27 (51%), Gaps = 5/27 (18%)
Query: 16 EGIYKCMECAKVDVIKTFKNKYSFQRH 42
G+++C+ CA + F + + + H
Sbjct: 13 GGLHRCLACA-----RYFIDSTNLKTH 34
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 30
Score = 24.2 bits (53), Expect = 1.4
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 53 KVFPC--PVCGKEFSRPDKMKNHMKT 76
K C C K +SR + +K H+++
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRS 26
Score = 24.2 bits (53), Expect = 1.4
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 81 KVFPC--PVCGKEFSRPDKMKNHMKT 104
K C C K +SR + +K H+++
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRS 26
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 24.2 bits (53), Expect = 1.4
Identities = 6/26 (23%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 53 KVFPC--PVCGKEFSRPDKMKNHMKT 76
+ + C C + FSR + H++
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRI 26
Score = 24.2 bits (53), Expect = 1.4
Identities = 6/26 (23%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 81 KVFPC--PVCGKEFSRPDKMKNHMKT 104
+ + C C + FSR + H++
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRI 26
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 25.4 bits (55), Expect = 1.6
Identities = 9/60 (15%), Positives = 21/60 (35%), Gaps = 9/60 (15%)
Query: 52 RKVFPCPVCGKEFSRP---------DKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHM 102
+K+ CP+C + P K ++ CP+C + ++ ++
Sbjct: 19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTR 78
Score = 24.3 bits (52), Expect = 4.1
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 21 CMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHM 74
C+E K V K + F + L ++ CP+C + ++ ++
Sbjct: 27 CLELIKEPVS--TKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTR 78
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 23.8 bits (52), Expect = 1.9
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 53 KVFPC--PVCGKEFSRPDKMKNHMKT 76
+ F C CGK F+R D+++ H +T
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRT 26
Score = 23.8 bits (52), Expect = 1.9
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 81 KVFPC--PVCGKEFSRPDKMKNHMKT 104
+ F C CGK F+R D+++ H +T
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRT 26
>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 29
Score = 23.3 bits (50), Expect = 2.3
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 81 KVFPCPV--CGKEFSRPDKMKNHMKTVH 106
K + C + C K ++ P ++ H+KTVH
Sbjct: 1 KPYVCKLPGCTKRYTDPSSLRKHVKTVH 28
>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha
{Human (Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 24.0 bits (52), Expect = 3.0
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 69 KMKNHMKTGCQRKVFPCPVCGKEFS 93
+++ + R F CPVC F+
Sbjct: 1 RIETDERDSTNRASFKCPVCSSTFT 25
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 22.9 bits (50), Expect = 3.1
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 53 KVFPCPVCGKEFSRPDKMKNHMKT 76
K + C CGK FS+ + NH +
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQRI 24
Score = 22.9 bits (50), Expect = 3.1
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 81 KVFPCPVCGKEFSRPDKMKNHMKT 104
K + C CGK FS+ + NH +
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQRI 24
>d1muka_ e.8.1.4 (A:) Reovirus polymerase lambda3 {Reovirus [TaxId:
10891]}
Length = 1264
Score = 24.9 bits (54), Expect = 4.6
Identities = 8/34 (23%), Positives = 10/34 (29%), Gaps = 11/34 (32%)
Query: 86 PVCGKEFSRPDK-----------MKNHMKTVHDC 108
P+ GKE + M VHD
Sbjct: 798 PIVGKERANSSAEEPWPAILDQIMGVFFNGVHDG 831
>d2e2dc1 b.40.3.1 (C:1001-1180) TIMP-2 {Cow (Bos taurus) [TaxId:
9913]}
Length = 180
Score = 24.5 bits (53), Expect = 4.6
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 8/54 (14%)
Query: 40 QRHAF--LYHEGCQRKVFPCPVCGKEFSRP------DKMKNHMKTGCQRKVFPC 85
Q+ + Y GC+ K+ CP+ S P D + G Q K F C
Sbjct: 114 QKKSLNHRYQMGCECKITRCPMIPCYISSPDECLWMDWVTEKNINGHQAKFFAC 167
>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 37
Score = 22.8 bits (48), Expect = 5.3
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 55 FPCPVCGKEFSRPDKMKNH 73
F C CGK F+R + M H
Sbjct: 5 FVCSKCGKTFTRRNTMARH 23
Score = 22.8 bits (48), Expect = 5.3
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 83 FPCPVCGKEFSRPDKMKNH 101
F C CGK F+R + M H
Sbjct: 5 FVCSKCGKTFTRRNTMARH 23
>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 22.4 bits (47), Expect = 6.6
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 81 KVFPCPVCGKEFSRPDKMKNHMKTVHD 107
++F C CGK+ MK H+ H+
Sbjct: 1 EMFTCHHCGKQLRSLAGMKYHVMANHN 27
>d1e7la2 d.4.1.5 (A:1-103) Recombination endonuclease VII,
N-terminal domain {Bacteriophage T4 [TaxId: 10665]}
Length = 103
Score = 23.4 bits (50), Expect = 8.6
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 85 CPVCGKEFSRPDKMKNHMKTVHDCFMPAT 113
C +C +E + PD NH+ H+ P
Sbjct: 23 CLICQRELN-PDVQANHLDHDHELNGPKA 50
>d1s0pa_ a.192.1.1 (A:) N-terminal domain of adenylylcyclase
associated protein, CAP {Dictyostelium discoideum
[TaxId: 44689]}
Length = 176
Score = 23.6 bits (51), Expect = 8.8
Identities = 3/16 (18%), Positives = 9/16 (56%)
Query: 90 KEFSRPDKMKNHMKTV 105
++ +R K N++ +
Sbjct: 77 RDSNRSSKFFNNLSAI 92
>d1wjpa3 g.37.1.1 (A:67-107) Zinc finger protein 295, ZNF295
{Human (Homo sapiens) [TaxId: 9606]}
Length = 41
Score = 22.0 bits (46), Expect = 9.1
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 5/27 (18%)
Query: 21 CMECAKVDVIKTFKNKYSFQRHAFLYH 47
C+EC ++TFK+ +S RH H
Sbjct: 6 CLEC-----MRTFKSSFSIWRHQVEVH 27
>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 30
Score = 22.0 bits (46), Expect = 9.3
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 53 KVFPCPVCGKEFSRPDKMKNHM 74
+VF C VC + F R +++ HM
Sbjct: 3 QVFTCSVCQETFRRRMELRLHM 24
Score = 22.0 bits (46), Expect = 9.3
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 81 KVFPCPVCGKEFSRPDKMKNHM 102
+VF C VC + F R +++ HM
Sbjct: 3 QVFTCSVCQETFRRRMELRLHM 24
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.138 0.454
Gapped
Lambda K H
0.267 0.0652 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 526,658
Number of extensions: 23603
Number of successful extensions: 292
Number of sequences better than 10.0: 1
Number of HSP's gapped: 270
Number of HSP's successfully gapped: 148
Length of query: 139
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 62
Effective length of database: 1,350,386
Effective search space: 83723932
Effective search space used: 83723932
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (22.4 bits)