Query psy7356
Match_columns 1083
No_of_seqs 89 out of 91
Neff 4.5
Searched_HMMs 46136
Date Sat Aug 17 00:40:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7356.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7356hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10266 Strumpellin: Heredita 100.0 0E+00 0E+00 3303.5 100.7 1042 20-1070 1-1081(1081)
2 KOG3666|consensus 100.0 0E+00 0E+00 2790.6 82.2 1059 5-1082 2-1098(1141)
3 PF09735 Nckap1: Membrane-asso 96.4 6 0.00013 52.5 48.8 838 71-1023 66-1007(1116)
4 PF14852 Fis1_TPR_N: Fis1 N-te 65.6 3.7 7.9E-05 32.9 1.4 22 539-560 4-26 (35)
5 KOG1917|consensus 63.0 4.9E+02 0.011 34.6 27.7 421 593-1067 591-1060(1125)
6 cd07910 MiaE MiaE tRNA-modifyi 51.0 1.4E+02 0.003 32.4 10.5 101 287-420 27-143 (180)
7 KOG2767|consensus 49.0 9.2 0.0002 44.6 1.6 32 163-197 12-58 (400)
8 PF14659 Phage_int_SAM_3: Phag 38.1 77 0.0017 26.3 5.2 55 410-466 2-58 (58)
9 PF04010 DUF357: Protein of un 35.1 46 0.00099 31.0 3.6 33 506-549 35-67 (75)
10 PHA01516 hypothetical protein 31.4 24 0.00051 33.4 1.1 28 748-777 48-86 (98)
11 cd07596 BAR_SNX The Bin/Amphip 31.0 6.3E+02 0.014 26.3 13.0 61 555-615 151-211 (218)
12 KOG4302|consensus 22.3 1.8E+03 0.039 28.7 16.0 202 382-617 25-239 (660)
13 cd00176 SPEC Spectrin repeats, 22.1 2.1E+02 0.0046 28.9 6.2 103 411-525 74-177 (213)
14 PF02585 PIG-L: GlcNAc-PI de-N 21.1 19 0.0004 35.2 -1.6 67 175-241 58-128 (128)
15 PF02561 FliS: Flagellar prote 21.0 3.9E+02 0.0084 26.5 7.5 85 486-578 28-114 (122)
16 cd07957 Anticodon_Ia_Met Antic 20.5 3.6E+02 0.0077 25.6 7.0 34 76-109 38-73 (129)
17 PF10224 DUF2205: Predicted co 20.5 3E+02 0.0064 26.3 6.1 42 692-751 13-61 (80)
18 cd07958 Anticodon_Ia_Leu_BEm A 20.4 2.5E+02 0.0054 26.2 5.9 55 73-145 48-102 (117)
No 1
>PF10266 Strumpellin: Hereditary spastic paraplegia protein strumpellin; InterPro: IPR019393 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. Strumpellin contains one known domain called a spectrin repeat that consists of three alpha-helices of a characteristic length wrapped in a left-handed coiled coil. The spectrin proteins have multiple copies of this repeat, which can then form multimers in the cell. Spectrin associates with the cell membrane via spectrin repeats in the ankyrin protein. The spectrin repeat is a structural platform for cytoskeletal protein assemblies. Two closely situated point mutations in human strumpellin lead to the condition of hereditary spastic paraplegia.
Probab=100.00 E-value=0 Score=3303.53 Aligned_cols=1042 Identities=52% Similarity=0.899 Sum_probs=1024.6
Q ss_pred hHHHHHHHhhhccCCCCc--ccccccccccceeecccCCCCchHHHhhhhcCcchHHhHHHHHHhHHHHHHHHHHHHHHH
Q psy7356 20 NAIIAELLRLKDHIPSIF--QQTDVNKQYSDLIIDFSYFSQNETVDNKIEGSQQLQELDEKIRDTYLEILVRFYVVFENI 97 (1083)
Q Consensus 20 nAIiAEllRLsd~iP~~f--~~~~~~~ky~~Ii~DFsYfk~~e~~E~kIe~~~~L~~LDeefr~~~~~il~RFy~lFesI 97 (1083)
|||||||||||||||++| ..+++ +||++|||||||||++|++|++||+|++|+|||||||+||+++++|||+|||||
T Consensus 1 ~aIiAEllRLs~~vP~~fl~~~~~~-~ky~~ii~DF~Yf~~~e~~e~~ie~~~~l~~ld~ef~~~~~~il~rF~~lF~si 79 (1081)
T PF10266_consen 1 NAIIAELLRLSDFVPSVFLDSKPEQ-SKYADIIFDFSYFKNPEQFEKKIESSPELQDLDEEFRENHIEILTRFYLLFESI 79 (1081)
T ss_pred ChHHHHHHHHHhhCCHhhccCChhh-ccccceeechhhcCChHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999 33565 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHhhcCCcchhhhhhhhheecCCCCC-CCHH
Q psy7356 98 YKFAINLNQYVENLENNVYIQESIESVFLDEEGCQLMCEALYLYGVMLLVTELYVPGAIREKLLVSYYRYSLNKS-QNFD 176 (1083)
Q Consensus 98 ~~Y~~dl~~yleel~~g~yiq~t~e~vl~d~~GkQLlcEalyLyGvmLL~lD~~i~G~vRERllVayyR~~~~~~-sn~d 176 (1083)
|+|++||++|+||+++|+|||||+|+||.|+|||||||||+||||||||+||++|||+|||||+||||||+|+++ +|+|
T Consensus 80 ~~y~~dl~~f~~el~~g~yiq~t~e~vl~~~~gkQLl~EalyLyGvmLl~lD~~i~g~vRERllVay~R~~~~~~~~n~d 159 (1081)
T PF10266_consen 80 YKYVTDLNRFLEELNEGVYIQQTLESVLQDEDGKQLLCEALYLYGVMLLLLDHKIPGPVRERLLVAYYRYKGSSDESNID 159 (1081)
T ss_pred HHHHHHHHHHHHHhhccchHHhhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHhhccCccchhhHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988 9999
Q ss_pred HHHHHhhc----------CCCCCCChhhhhcCCCCCHHHHHHHHHHhcccccccccccCCCCCcchhhhhccccceeeee
Q psy7356 177 EVCQLFSS----------SKKGNGYPENVFSRIPINENLVNMILGKLRTDDIYHSIVAYPLPQHRSTALANQASMLFVCL 246 (1083)
Q Consensus 177 ~vc~Llr~----------~~~p~~YPe~yF~Rvp~~~~~V~~vigrLrsDDiy~q~~~yP~p~HRs~ala~QasmLyV~L 246 (1083)
+||+|||+ +++|+||||+||+|||+|+.||+||||||||||||||+++||+|||||||||+|||||||||
T Consensus 160 ~v~~l~rstg~~~~~~~~~~~p~~yPe~yf~R~p~~~~~v~~vigrlrsdDiYnq~~~yP~peHRStala~Qa~mLyV~L 239 (1081)
T PF10266_consen 160 DVCKLLRSTGYSPDSGGAAKRPANYPEEYFSRVPLPESFVDMVIGRLRSDDIYNQISVYPHPEHRSTALATQASMLYVIL 239 (1081)
T ss_pred HHHHHhhccCCCCCCcccccCccCCHHHHHHhCCCCHHHHHHHHHHHhhcccccccccCCChhhhhHHhhcchhHeeeee
Confidence 99999999 26899999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccccccchhhhhhhhhhcCCccEEeeccceeeeccccccccHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHH
Q psy7356 247 YFDTSVLHNNTANMREVVDKFFPDNWIVSIYMGITVQLIDAWEPYRAAKLALSNSLETSNVKQYSTFHTDRIIKLTSQTN 326 (1083)
Q Consensus 247 ~F~P~~L~~~~a~MREIVDk~F~DnWVi~~ymG~~vnL~~~W~~ykAA~~AL~ntl~~~~vk~~~~~~~~~~~~~~~~~~ 326 (1083)
||+|++|||++|+||||||||||||||||+|||+||||+|+|+||||||+||+||++++|||+++++|.++|++++.+++
T Consensus 240 ~F~P~iL~~~~a~MREIVDk~F~DnWVi~~ymG~~vnL~~~W~~ykAA~~AL~ntl~~~~vk~~~~~~~~~~~~l~~~~~ 319 (1081)
T PF10266_consen 240 YFSPQILHNQTAKMREIVDKFFPDNWVISIYMGITVNLSDAWDPYKAAKTALNNTLTPQNVKELAQKHRKSVQKLLQELQ 319 (1081)
T ss_pred eechHHhcCCchHHHHHHHHhCccceEEEeecceEEehhhhhcchHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccchhhhccCcHHHHHHHhhhhhhhhhhhhccCCCccccccccchhhhHHHHHHHhhCCChhHHHHHHHhhhHh
Q psy7356 327 QLLKDGALTEENVLDNTNKILNLARECNVTIRWLVLHTSSNHETISGVAASKKSKQIKDIVSNNINMSDVFQLILNTSEF 406 (1083)
Q Consensus 327 ~~l~EG~L~ee~vLdni~~l~~~iR~~Nv~lRWl~LHt~~~~~~~~~~~~~k~~r~l~~~v~~~~~~~~l~~LLL~taql 406 (1083)
++|+||+|||||||||+++|++|+|+|||||||+||||+++ .....++++|+++++|.++++++++|+|||+||||
T Consensus 320 ~~L~EG~lte~~vLdn~~~ll~~ir~~Nv~lRWl~LHt~~~----~~~~~~~~~~~~~~~v~~~~~~~~l~~LLL~taql 395 (1081)
T PF10266_consen 320 QVLKEGVLTEEFVLDNIPKLLNLIRECNVTLRWLLLHTSRS----PGSSSSKKSKQLRDLVIQKFSDDDLFQLLLNTAQL 395 (1081)
T ss_pred HHHHhccchHHHHHhhhHHHHHHHHHhhHHHHHHHhccccc----ccccccchhHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887 44456899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHhHHHhHHHHHHHHHHHHHHccCCCCCCccccchhHHHHHHHHHHhhhhcccCCcchhhHHHHH
Q psy7356 407 ELKIKELLKALLEDKQNKWNSCKQECNERLNYLIELFSGAKPLPKVHKNQQLEKWFSEINSHLESLNFSDEMGSVQKIVQ 486 (1083)
Q Consensus 407 E~~lk~~~~~lL~~K~~~W~~~K~e~~erm~eLae~FsG~~pL~r~~kne~L~~WF~~is~~I~~Ld~~d~~~agRkI~q 486 (1083)
|+++|+||+++|++|+++|+++|++|+|||+||||+|||++||+|++||+||++||++|++||++|||+|+++|||||+|
T Consensus 396 E~~lk~~~~~lL~~K~~~w~~~k~~~~~~m~eLa~~Fsg~~~L~~~~~n~~L~~Wf~~~~~~i~~Ld~~~~~~agrkI~q 475 (1081)
T PF10266_consen 396 EFELKEMFKTLLEEKEERWEECKKEASERMQELAEFFSGTKPLTRIEKNENLQQWFREMSKQIESLDYEDSTKAGRKIQQ 475 (1081)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccchhHHHHHHHHHHHHHhccccccchHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhCcccchHHHHHHHHHHHHHHHHHHHccccchhhhhhhhhcccchhhhhhhhhHHHHHHHhhhCCchHH
Q psy7356 487 FIQALDSVKEFHGLSSNAQVEQWIDESIKYLNIMVRSVNVKDKVMIHLQIIADLSYAWKLIDQFTPLMQDAIKNEPSLLI 566 (1083)
Q Consensus 487 LiqALeeVqefhql~~nlqVkQ~L~etr~~L~~M~r~inike~vl~~i~~i~D~SYAW~lid~yt~~mQ~~Ik~~P~~v~ 566 (1083)
||||||||||||||++||||||||+|||++||+|+|++||+|+++++|++|||+||||++|++||+.||++||+||++|+
T Consensus 476 liqaLeeV~efhql~~nlqvkq~l~etr~~L~~M~r~~ni~e~~l~~l~~i~D~SYaW~li~~~~~~mQ~~Ik~~P~~v~ 555 (1081)
T PF10266_consen 476 LIQALEEVQEFHQLSSNLQVKQFLQETRQLLHQMIRTINIKEEVLITLQIISDFSYAWELIDSYTPIMQQRIKKDPSTVI 555 (1081)
T ss_pred HHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHHHhCCcHHHHhHhHhhhhhhHHHHHHHHHHHHHHHHHhcCChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccccccccccCcchhHHHHHhHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccccccCCCccchhH
Q psy7356 567 KLRALFLKLSTSLEIPLLRINQAESEDLISVSQYYSNELVTYMQHVLQIIPQTMFTLMADITNLQTNVMLEVPTRLDKDK 646 (1083)
Q Consensus 567 kLRa~FLKLaS~L~lPLlRI~Qa~S~Dl~sVS~yYS~eLv~~vR~VLqIIP~smF~iL~~Ii~lqT~~ike~PtrleK~~ 646 (1083)
||||+||||||+||+||+|||||+|+|++|||+|||+|||+|||+||||||+|||+||++||++||+++||+||||||++
T Consensus 556 ~lRa~FlKLaS~L~~pl~Ri~Q~~s~Dl~sVS~yYS~eLv~~vR~VLqiIP~smF~il~~ii~l~t~~~ke~P~rl~K~~ 635 (1081)
T PF10266_consen 556 KLRATFLKLASALELPLLRINQAESPDLSSVSQYYSSELVKYVRKVLQIIPESMFEILAQIIDLQTNVLKELPTRLEKDE 635 (1081)
T ss_pred HHHHHHHHHHHHhccHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcccccCCCccCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhchhhHHHHHHHHHHHHHHhHHHhhhhcccceeEEeChhhhhHhHHHHHHHHHHHHHHhccccccCCCCCchhhHH
Q psy7356 647 LKDYAQLDTRFEIAHLTHSISVFTQGILRMKSTLVGIVCIDPKQLLHNGIKKQLAETILTELNKGLTFNTKSKTNKTDLM 726 (1083)
Q Consensus 647 Lk~yAQl~eR~~lA~lT~~ISvfTeGIL~M~~TlvGvIevDPkqLLEDGIRKELV~~ia~alh~~LiF~~k~~~~~~el~ 726 (1083)
||||||||+|+|+|++||+||+||+||||||+|+|||||||||||||||||||||+||++|||++|+|+.|.+.++++++
T Consensus 636 lk~~Aql~~R~~lA~~T~~is~ft~GIl~M~~T~vGvi~vdP~qLLedGIRkeLv~~i~~~l~~~L~F~~~~~~~~~~l~ 715 (1081)
T PF10266_consen 636 LKDYAQLDERYQLAKLTHSISVFTEGILAMKTTLVGVIEVDPKQLLEDGIRKELVKQIAKALHEGLIFNEKPKPKASELQ 715 (1081)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhceeEecCHHHHHHHHHHHHHHHHHHHHHHhhccCCccccCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999965555568999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHhhhhHHhhhcc--------C----------------CCC
Q psy7356 727 TKLGQLAVVMDGHKRSFEYIQDYVGIYGLKVWYEVLNQVIEETVSSEIDSLS--------S----------------TSG 782 (1083)
Q Consensus 727 ~~L~~L~~~~~g~rrSFEYIQDYvnI~GLkIW~eE~sRIInynVE~Ecn~Fl--------S----------------~~s 782 (1083)
++|.+||++|+||||||||||||||||||||||||++||||||||||||+|+ | ++|
T Consensus 716 ~~L~~L~~~~~g~R~SFEYIQDYvnI~GLrIW~EE~sRIInynVEqECn~Flr~kv~~w~S~yQs~~IPIP~f~p~~~~s 795 (1081)
T PF10266_consen 716 EKLQKLAARMDGFRRSFEYIQDYVNIHGLRIWQEEFSRIINYNVEQECNAFLRKKVQDWQSQYQSRAIPIPRFPPVDDNS 795 (1081)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhccccCCCCCCCCCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999 1 349
Q ss_pred CCchHHHHHHHHhhcCCCcceeecCcccccccCCCccccchHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHH-
Q psy7356 783 CTFVGRLADELVSMTDPKQSMYVENTTAWYNVKTQKEIFNMKIFSLIIKAIGISGLVGLDNVLGFRIVKNIQSVFSQLF- 861 (1083)
Q Consensus 783 ~nFiGRLa~eil~iTDPk~T~Yi~~~~~WyD~kt~~Ev~~~~~fs~l~~alg~~GL~gLDrL~~f~iv~eLq~~~~~~~- 861 (1083)
+|||||||||||++||||+|+|+++++||||.||++||+|+++|++|++|+|++||+|||||+||||++|||++++.++
T Consensus 796 ~nFiGRLa~eiLriTDPk~T~Y~~~~~~WyD~kt~~EVlg~~~Fs~l~~aig~~GL~GLDrLlsfmi~keLq~~~~~~~~ 875 (1081)
T PF10266_consen 796 VNFIGRLAREILRITDPKTTIYLEQMNGWYDKKTHKEVLGTKTFSRLQEAIGTFGLTGLDRLLSFMIVKELQNFLSTIQK 875 (1081)
T ss_pred ccHHHHHHHHHHhhcCCCeeEeecccCceecCCCcchhhCHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCchHHHHHHHhhhcCCCCCCCCCCcCcHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhhhcccCchHH
Q psy7356 862 NYSNDKPCQDILAQMSKELSPNTNPISNPTKLYPQYLSKMNKYLMGVNDSLIQIGQLQILRQLLRHELSSCAQFESKNLH 941 (1083)
Q Consensus 862 ~~~~~~~~~~~l~~l~~~l~p~~~~~~~~~k~Y~~~~~~~~~~~~~~~~~i~~IGQ~QLLR~~Ia~eL~~s~K~~s~~L~ 941 (1083)
++.++++|.+++++|.++++|.+++|+|++|+|++++++++|.|+++++++++|||+||||+|||+||+++||+||++|+
T Consensus 876 ~l~~d~~~~~~L~~L~~~l~p~~~~p~n~~K~Y~~~~~~~~k~~~~ll~~i~~IGQ~QLLR~qIa~eL~~scK~dS~~L~ 955 (1081)
T PF10266_consen 876 NLQKDKMWRDVLASLQKALTPESSIPENPSKVYEQAVKKISKSWPPLLDWILKIGQLQLLRRQIANELNSSCKFDSKSLF 955 (1081)
T ss_pred HHhhhhhHHHHHHHHHHHhCCCccCcccchHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCchHHH
Confidence 77789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHhhhcCC-CCCCCCCchHHHHHHHHHHHHhcccCccccceeccCCCCChhHHHHHHHHHhcccccc
Q psy7356 942 LCLETLDKSLLNDLRLYYSKE-GMSLPTDNQELMTSICAYLKWIGQDNPYHKIYVTSRNIPYFPLFLFLYSLSVLSKVTY 1020 (1083)
Q Consensus 942 ~aL~tlN~all~di~~h~~dp-~~p~p~~~~~ll~eL~~~L~~~Gi~dPl~kIYitt~~~~~l~l~lflf~ls~l~k~~y 1020 (1083)
+||+|||+|+|+|+++||+|| ++|+|+++ +++||++||++|||+||++|||||++|+|++|+++|+|+|+|||||+|
T Consensus 956 ~aL~tlN~ALL~Di~~hy~~p~s~p~P~e~--LL~eLs~yL~~~Gi~dPl~KIYittkplp~~~llLfLftIsqLpkl~y 1033 (1081)
T PF10266_consen 956 AALETLNKALLNDIEAHYRDPDSKPYPSED--LLPELSKYLEAAGISDPLRKIYITTKPLPNFPLLLFLFTISQLPKLQY 1033 (1081)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCChHH--HHHHHHHHHHHhcCCCHHHhhcccCCCCcccHHHHHHHHHHhcchhcc
Confidence 999999999999999999999 67999877 999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccCCCCCCCCchhHHHHHHHHHhhcCcchHHHHHHHHHHHH
Q psy7356 1021 SSSQDLFLTKKGYEYCHTDCVVVLVGLHTLFHQFHKDIGEQYLVYLCQYI 1070 (1083)
Q Consensus 1021 ~~~l~~L~~k~~~d~~~~D~~p~vvG~~TlL~QFh~~~~~~fl~~l~qyi 1070 (1083)
|+++|+|++||++|+ +||+||+||++|+|||||++++++||+||||||
T Consensus 1034 ~~~lgsLv~kk~~d~--iD~~pfvvGi~TlLrQFH~~~t~~fL~yLgQYV 1081 (1081)
T PF10266_consen 1034 DKNLGSLVSKKKKDP--IDGTPFVVGILTLLRQFHSSHTELFLSYLGQYV 1081 (1081)
T ss_pred cccccccccCCCCCC--CCcHhHHHHHHHHHHhcCHHHHHHHHHHHhccC
Confidence 999999999999999 999999999999999999999999999999997
No 2
>KOG3666|consensus
Probab=100.00 E-value=0 Score=2790.60 Aligned_cols=1059 Identities=45% Similarity=0.815 Sum_probs=1036.9
Q ss_pred cchHHHHHHHHhhhhhHHHHHHHhhhccCCCCccccccccccccee-ecccCCCCchHHHhhhhcCcchHHhHHHHHHhH
Q psy7356 5 NEQWKVTILELVSRGNAIIAELLRLKDHIPSIFQQTDVNKQYSDLI-IDFSYFSQNETVDNKIEGSQQLQELDEKIRDTY 83 (1083)
Q Consensus 5 ~n~CGq~lL~lVsrGnAIiAEllRLsd~iP~~f~~~~~~~ky~~Ii-~DFsYfk~~e~~E~kIe~~~~L~~LDeefr~~~ 83 (1083)
||.|||+||++||+||+|||||||||+|||++|++|.+..||+.|+ +||||||..|++|++||+ +| .||+|||.++
T Consensus 2 nnecgqfLlkivshGnSIiAEIlRLssfiPkdfRlptKadKfKyiviLDFsYfkkveqiEkelEs--eL-rLdtefrstf 78 (1141)
T KOG3666|consen 2 NNECGQFLLKIVSHGNSIIAEILRLSSFIPKDFRLPTKADKFKYIVILDFSYFKKVEQIEKELES--EL-RLDTEFRSTF 78 (1141)
T ss_pred ccHHHHHHHHHHHhchHHHHHHHHHHhhchHhhcCCchhhhhheeEEEehHhhccHHHHHHHHHH--Hh-hhHHHHHhhc
Confidence 7999999999999999999999999999999999987777777654 999999999999999999 66 8899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHhhcCCcchhhhhhhh
Q psy7356 84 LEILVRFYVVFENIYKFAINLNQYVENLENNVYIQESIESVFLDEEGCQLMCEALYLYGVMLLVTELYVPGAIREKLLVS 163 (1083)
Q Consensus 84 ~~il~RFy~lFesI~~Y~~dl~~yleel~~g~yiq~t~e~vl~d~~GkQLlcEalyLyGvmLL~lD~~i~G~vRERllVa 163 (1083)
+|+|+|||++|+|||+|++||.+|.+|++-|. | ||||.-++|+||+||.|||.|||||++|.+|||+|||||+||
T Consensus 79 ePvltrFylaFqSIheyvqdlisYtkElnign--q---ETvldvergsqLlcecLYlsGv~ll~~D~~IPg~vRER~lIA 153 (1141)
T KOG3666|consen 79 EPVLTRFYLAFQSIHEYVQDLISYTKELNIGN--Q---ETVLDVERGSQLLCECLYLSGVMLLVIDQKIPGEVRERMLIA 153 (1141)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--c---ceeeecccchHHHHHHHHHhhhhhheeecccCchHHhHHhhh
Confidence 99999999999999999999999999999996 3 999999999999999999999999999999999999999999
Q ss_pred heecCCCCC---CCHHHHHHHhhc--------CCCCCCChhhhhcCCCCCHHHHHHHHHHhcccccccccccCCCCCcch
Q psy7356 164 YYRYSLNKS---QNFDEVCQLFSS--------SKKGNGYPENVFSRIPINENLVNMILGKLRTDDIYHSIVAYPLPQHRS 232 (1083)
Q Consensus 164 yyR~~~~~~---sn~d~vc~Llr~--------~~~p~~YPe~yF~Rvp~~~~~V~~vigrLrsDDiy~q~~~yP~p~HRs 232 (1083)
|||||+.++ ||+||||+|||| +++|++|||+||+|||+||.||++||||+|+||||||.+.||+|+|||
T Consensus 154 yYRySa~~s~~~sN~~d~c~lLrsTgy~~q~ga~~~s~ypesyf~R~p~~EsFi~~vi~rlr~ddIynq~~~yp~P~hrs 233 (1141)
T KOG3666|consen 154 YYRYSAARSSADSNMDDICKLLRSTGYSSQPGAKRPSNYPESYFQRVPINESFISMVIGRLRSDDIYNQVSAYPLPEHRS 233 (1141)
T ss_pred hhhhccCcccchhhHHHHHHHHHhcCCCCcccccccccCcHHHHhhCCCcHHHHHHHHHHHHhHHHHHhhhcCcCccchh
Confidence 999996654 999999999999 689999999999999999999999999999999999999999999999
Q ss_pred hhhhccccceeeeeeeccccccccchhhhhhhhhhcCCccEEeeccceeeeccccccccHHHHHHhhhccchhhHHHHHH
Q psy7356 233 TALANQASMLFVCLYFDTSVLHNNTANMREVVDKFFPDNWIVSIYMGITVQLIDAWEPYRAAKLALSNSLETSNVKQYST 312 (1083)
Q Consensus 233 ~ala~QasmLyV~L~F~P~~L~~~~a~MREIVDk~F~DnWVi~~ymG~~vnL~~~W~~ykAA~~AL~ntl~~~~vk~~~~ 312 (1083)
||||+||+||||||||+|++||+++|+||||||||||||||||+|||+||||+|+|++|||||+|++||+++++|+++++
T Consensus 234 tal~~qAamlYV~LyF~pQ~Lh~~~a~MreIvdk~f~dnWvIs~ymG~tvNlvDaW~~FKaA~~AInn~~~~s~I~~q~~ 313 (1141)
T KOG3666|consen 234 TALANQAAMLYVILYFEPQILHTHQAKMREIVDKYFPDNWVISIYMGITVNLVDAWEPFKAAKTAINNTLDLSNIREQAS 313 (1141)
T ss_pred hhhhhHHHHHHHHhhhchHhhhcchHHHHHHHHHhCccceEEEEecceeeehhhhhhhhHHHHHHHhccCChhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccchhhhccCcHHHHHHHhhhhhhhhhhhhccCCCccccccccchhhhHHHHHHHhhC--
Q psy7356 313 FHTDRIIKLTSQTNQLLKDGALTEENVLDNTNKILNLARECNVTIRWLVLHTSSNHETISGVAASKKSKQIKDIVSNN-- 390 (1083)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~EG~L~ee~vLdni~~l~~~iR~~Nv~lRWl~LHt~~~~~~~~~~~~~k~~r~l~~~v~~~-- 390 (1083)
++...+++..++++++++|||++|++||+|++++++|+|+|||+|||+||||..+ .++|++++.+|+++.+..+
T Consensus 314 Q~~~~~eK~~~~~qE~~~egVlNe~~vlE~~~k~l~~~r~cNv~LrWl~LHt~~s----~~~~~~~~L~q~~~~~l~d~Q 389 (1141)
T KOG3666|consen 314 QYATVSEKVHAQVQEFLKEGVLNEEMVLENIPKLLNCLRDCNVALRWLMLHTADS----ACDPNNKRLRQIKDQILTDSQ 389 (1141)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHhHhccHHHHHHHHHhhHHHHHHHHhhhhh----hhCCCccchHHHhhhcCchhc
Confidence 9999999999999999999999999999999999999999999999999999988 6779999999998988876
Q ss_pred CChhHHHHHHHhhhHhHHHHHHHHHHHHHhHHHhHHHhHHHHHHHHHHHHHHccCCCCCCccccchhHHHHHHHHHHhhh
Q psy7356 391 INMSDVFQLILNTSEFELKIKELLKALLEDKQNKWNSCKQECNERLNYLIELFSGAKPLPKVHKNQQLEKWFSEINSHLE 470 (1083)
Q Consensus 391 ~~~~~l~~LLL~taqlE~~lk~~~~~lL~~K~~~W~~~K~e~~erm~eLae~FsG~~pL~r~~kne~L~~WF~~is~~I~ 470 (1083)
|++..||||||+|||+|+.+||||+++|++|+.+|.++|+|+.+|++||||+|+|.+|+++++.|+|||+||+|+|++|+
T Consensus 390 ~n~~~LfqlLL~~Sq~E~~l~e~~~~~l~~k~~~wT~~k~e~~~rL~eLaE~F~g~~pl~~~eQn~nlq~Wfre~s~~i~ 469 (1141)
T KOG3666|consen 390 YNPRILFQLLLDTSQFEFILKEMFKQMLSEKQTKWTHYKKEGSERLTELAEVFSGVKPLTRVEQNENLQAWFREISKQIL 469 (1141)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHcCCCcccccccchhHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCcchhhHHHHHHHHHHHHHHhhhCcccchHHHHHHHHHHHHHHHHHHHccccchhhhhhhhhcccchhhhhhhhh
Q psy7356 471 SLNFSDEMGSVQKIVQFIQALDSVKEFHGLSSNAQVEQWIDESIKYLNIMVRSVNVKDKVMIHLQIIADLSYAWKLIDQF 550 (1083)
Q Consensus 471 ~Ld~~d~~~agRkI~qLiqALeeVqefhql~~nlqVkQ~L~etr~~L~~M~r~inike~vl~~i~~i~D~SYAW~lid~y 550 (1083)
+||.+|+|++||+|+|+|||||+|||||||++||+|||||++||++||+|++++|+||++++++++++|+||||++|++|
T Consensus 470 Kl~L~d~t~Sgr~I~Qiiqal~~Vqe~h~L~sNl~vKq~L~~tr~~L~qm~~~inLke~~~i~~q~~~d~sYaW~Li~~f 549 (1141)
T KOG3666|consen 470 KLNLDDSTASGRKIVQLIQALEEVQEFHQLESNLQVKQFLADTRKFLHQMIRTINLKEEVLITMQIVGDLSYAWQLIDSF 549 (1141)
T ss_pred hhcCCCchhhHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhCcchhheeeeeeehhHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCchHHHHHHHHHHHHhhccccccccccccCcchhHHHHHhHHHHHHHHHHHHhhcchHHHHHHHHHHHh
Q psy7356 551 TPLMQDAIKNEPSLLIKLRALFLKLSTSLEIPLLRINQAESEDLISVSQYYSNELVTYMQHVLQIIPQTMFTLMADITNL 630 (1083)
Q Consensus 551 t~~mQ~~Ik~~P~~v~kLRa~FLKLaS~L~lPLlRI~Qa~S~Dl~sVS~yYS~eLv~~vR~VLqIIP~smF~iL~~Ii~l 630 (1083)
||.||++||.+|++|+++||+|+||||+|++|++|||||+|+|++|||+|||+||++|+|+||||||++||+||++||++
T Consensus 550 tP~mQe~i~v~ps~v~~iRa~FlKLas~l~~pllrinqa~s~DlVsvsNyYS~eL~~~Lr~VLQiVPe~mF~Il~kiI~l 629 (1141)
T KOG3666|consen 550 TPIMQESIRVNPSMVTKLRATFLKLASALDLPLLRINQANSPDLVSVSNYYSGELVSYLRKVLQIVPESMFTILLKIIKL 629 (1141)
T ss_pred hhHHHHhhccCchHHHHHHHHHHHHHHHhhhHHHHhccCCCcchhhhhhHhhHHHHHHHHHHHHhchHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccCCCccchhHHhhhhchhhHHHHHHHHHHHHHHhHHHhhhhcccceeEEeChhhhhHhHHHHHHHHHHHHHHhc
Q psy7356 631 QTNVMLEVPTRLDKDKLKDYAQLDTRFEIAHLTHSISVFTQGILRMKSTLVGIVCIDPKQLLHNGIKKQLAETILTELNK 710 (1083)
Q Consensus 631 qT~~ike~PtrleK~~Lk~yAQl~eR~~lA~lT~~ISvfTeGIL~M~~TlvGvIevDPkqLLEDGIRKELV~~ia~alh~ 710 (1083)
+||++||+|||+|||+|||||||++|+++|++||+|++||+||+|||+|+||+||||||||||||||||||++|++|+|.
T Consensus 630 ~t~~iKeFpt~iEK~~LrdyaqF~~r~~va~lT~~IA~ft~GIlmMktTlVG~IEidPKqLLEdGirkeLvk~ia~a~~~ 709 (1141)
T KOG3666|consen 630 QTHDIKEFPTRLEKDKLRDYAQFGPRYEVAKLTHAIAIFTEGILMMKTTLVGIIEVDPKQLLEDGIRKELVKRVAFALHR 709 (1141)
T ss_pred cccccccCCccccHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhheeEEeeCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHhhhhHHhhhcc------------
Q psy7356 711 GLTFNTKSKTNKTDLMTKLGQLAVVMDGHKRSFEYIQDYVGIYGLKVWYEVLNQVIEETVSSEIDSLS------------ 778 (1083)
Q Consensus 711 ~LiF~~k~~~~~~el~~~L~~L~~~~~g~rrSFEYIQDYvnI~GLkIW~eE~sRIInynVE~Ecn~Fl------------ 778 (1083)
|++|+|++|+ +++++||.+||++++||||||||||||+|++|+|||+||++||||||||+|||||+
T Consensus 710 Glif~p~~kp--s~l~~kL~~l~~tIEg~RrSFeYi~DY~n~~Gl~iw~ee~~riinynve~EcnAFlR~k~q~~qs~~q 787 (1141)
T KOG3666|consen 710 GLIFNPRAKP--SELMPKLKELGATIEGFRRSFEYIQDYVNIYGLKIWQEEVSRIINYNVEQECNAFLRTKIQDWQSMYQ 787 (1141)
T ss_pred ccccCCCCCc--HHHHHHHHHHHHHHHHHHhhHHHHHHHHcchhHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhh
Confidence 9999999998 88999999999999999999999999999999999999999999999999999999
Q ss_pred C-----------CCCCCchHHHHHHHHhhcCCCcceeecCcccccccCCCccccchHHHHHHHHHhcccccchhhhHHHH
Q psy7356 779 S-----------TSGCTFVGRLADELVSMTDPKQSMYVENTTAWYNVKTQKEIFNMKIFSLIIKAIGISGLVGLDNVLGF 847 (1083)
Q Consensus 779 S-----------~~s~nFiGRLa~eil~iTDPk~T~Yi~~~~~WyD~kt~~Ev~~~~~fs~l~~alg~~GL~gLDrL~~f 847 (1083)
| |+|+||||||+||||||||||.|+|+|+.++|||.|+++||++.++|+.|++++|++||+||+|++||
T Consensus 788 s~~ipip~f~p~d~s~~fIgrL~~eilriTdPK~t~F~d~~~tWyd~K~hqeVLss~~F~~i~~~l~~~gl~glErl~~~ 867 (1141)
T KOG3666|consen 788 STHIPIPKFTPVDESVTFIGRLCREILRITDPKMTCFIDQLNTWYDMKTHQEVLSSRLFSEIQTTLGTFGLNGLERLLCF 867 (1141)
T ss_pred ccccCCCCCCCCCchhHHHHHHHHHHHhcCCchhhHHHHhhhhHHHHHHHHHHHHhhHHHHHHHHhchhhhhhHHHHHHH
Confidence 1 77999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-hhcCCCchHHHHHHHhhhcCCCCCCCCCCcCcHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHH
Q psy7356 848 RIVKNIQSVFSQLF-NYSNDKPCQDILAQMSKELSPNTNPISNPTKLYPQYLSKMNKYLMGVNDSLIQIGQLQILRQLLR 926 (1083)
Q Consensus 848 ~iv~eLq~~~~~~~-~~~~~~~~~~~l~~l~~~l~p~~~~~~~~~k~Y~~~~~~~~~~~~~~~~~i~~IGQ~QLLR~~Ia 926 (1083)
|+++||+++++.++ .+++|++|.++|+++.+++.|..++..+++|.|+.++++++|+|+++++|+++|||+|+|||+||
T Consensus 868 mL~keL~~~ls~~qki~~Sdr~~~dtL~~l~~~~sp~~~~~~~~~k~Y~~~~~~~qk~w~aLl~~~~~IGQ~qilrR~Ia 947 (1141)
T KOG3666|consen 868 MLVKELQNFLSMFQKIILSDRTVQDTLKTLMNAVSPLKSIVANSNKIYFSAIAKTQKIWTALLEAIMKIGQMQILRRQIA 947 (1141)
T ss_pred HHHHHHHHHHHHHHHhcccchhHHHHHHHHHhccCcchhHHhcCchhHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHh
Confidence 99999999999999 88999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhcccCchHHHHHHHHhHHHHHHHHhhhcCCCCCCCCCchHHHHHHHHHHHHhcccCccccceeccCCCCChhHH
Q psy7356 927 HELSSCAQFESKNLHLCLETLDKSLLNDLRLYYSKEGMSLPTDNQELMTSICAYLKWIGQDNPYHKIYVTSRNIPYFPLF 1006 (1083)
Q Consensus 927 ~eL~~s~K~~s~~L~~aL~tlN~all~di~~h~~dp~~p~p~~~~~ll~eL~~~L~~~Gi~dPl~kIYitt~~~~~l~l~ 1006 (1083)
+||++||||||++++++++|+|+|+|.++...+.- |.|++++++|.+|.++|+++|++||++|||+++|..|++|++
T Consensus 948 nel~~s~r~d~khlE~~~~~lnkalL~E~S~S~~l---~Dpk~~~t~l~ei~~~l~~~g~~~Pl~~iF~~tK~~p~~~~~ 1024 (1141)
T KOG3666|consen 948 NELNYSCRFDSKHLEAALENLNKALLAEISASYQL---PDPKEDNTLLYEITAYLEAAGIHNPLNKIFITTKRLPYFPIV 1024 (1141)
T ss_pred hhhhhhhcccHHHHHHHHHhhhHHHHHHHHHhhcC---CCCcccchHHHHHHHHHHHhccCCHHHHHHHHhccCCcchhH
Confidence 99999999999999999999999999999876642 456789999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccccccccccccccCCCCCCCCchhHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhhhhcccC
Q psy7356 1007 LFLYSLSVLSKVTYSSSQDLFLTKKGYEYCHTDCVVVLVGLHTLFHQFHKDIGEQYLVYLCQYIKSHVASSLDTDR 1082 (1083)
Q Consensus 1007 lflf~ls~l~k~~y~~~l~~L~~k~~~d~~~~D~~p~vvG~~TlL~QFh~~~~~~fl~~l~qyir~~v~~~~~~~~ 1082 (1083)
+|||+|+++|+++|+++.|+|+|||++|| +|++||+||+.|+|||||++++++|++|++|||.+..++++.+++
T Consensus 1025 ~fLF~IA~l~~lq~~~~~~y~vc~k~~d~--~d~~p~~VGl~tiL~Qfh~~~~~~~~~l~~qf~~~~~Eq~~~~k~ 1098 (1141)
T KOG3666|consen 1025 NFLFLIAQLPKLQYNKNLGYMVCRKPTDP--VDWPPLVVGLLTLLKQFHSRYTEQFLALIGQFICSTVEQCTSQKI 1098 (1141)
T ss_pred hHHHHHHHHhhhcccCCCCceeCCCcCCc--ccCcchhhHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhcccccC
Confidence 99999999999999999999999999999 999999999999999999999999999999999999999987654
No 3
>PF09735 Nckap1: Membrane-associated apoptosis protein; InterPro: IPR019137 Nck-associated protein 1 is part of lamellipodial complex that controls Rac-dependent actin remodeling. It associates preferentially with the first SH3 domain of Nck and is a component of the WAVE2 complex composed of ABI1, CYFIP1/SRA1, NCKAP1/NAP1 and WASF2/WAVE2. It is also a component of the WAVE1 complex composed of ABI2, CYFIP2, C3orf10/HSPC300, NCKAP1 and WASF1/WAVE1. CYFIP2 binds to activated RAC1 which causes the complex to dissociate, releasing activated WASF1. The complex can also be activated by NCK1. Expression of this protein was found to be markedly reduced in patients with Alzheimer's disease [].; PDB: 3P8C_B.
Probab=96.40 E-value=6 Score=52.45 Aligned_cols=838 Identities=14% Similarity=0.207 Sum_probs=406.3
Q ss_pred chHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHhh
Q psy7356 71 QLQELDEKIRDTYLEILVRFYVVFENIYKFAINLNQYVENLENNVYIQESIESVFLDEEGCQLMCEALYLYGVMLLVTEL 150 (1083)
Q Consensus 71 ~L~~LDeefr~~~~~il~RFy~lFesI~~Y~~dl~~yleel~~g~yiq~t~e~vl~d~~GkQLlcEalyLyGvmLL~lD~ 150 (1083)
.+.-+. .-++.+.+-|+-+|..|--+-.|-.-..+.+-++... .++ -.+=.|-+=-.-..+-+--|+-|.+++.+
T Consensus 66 ~~~~~~-~~~~e~~~~L~~~Y~tf~D~~df~d~v~elL~~i~~~-~~~---ldi~~N~~lt~~yLdL~v~yv~~~lllsr 140 (1116)
T PF09735_consen 66 GLEPLQ-NRKKEILKSLSPYYYTFVDLMDFRDHVYELLTTIDAC-QIT---LDITLNFDLTKAYLDLVVNYVSVMLLLSR 140 (1116)
T ss_dssp TTHHHH-HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-------TTTSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-eee---eccccCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344443 3446688888888888876666666655666655322 111 11112334445556678889999999988
Q ss_pred cCCcchhhhhhhhheecC-----CCCCCCHHHHHHHhhcCCCCCCC-hhhhhcCCCCCHHHHHHH-----------H--H
Q psy7356 151 YVPGAIREKLLVSYYRYS-----LNKSQNFDEVCQLFSSSKKGNGY-PENVFSRIPINENLVNMI-----------L--G 211 (1083)
Q Consensus 151 ~i~G~vRERllVayyR~~-----~~~~sn~d~vc~Llr~~~~p~~Y-Pe~yF~Rvp~~~~~V~~v-----------i--g 211 (1083)
-.| | ++++.-|.+. |++++++..+.+++-+-..|-.. -|++ .|+++.+-+.+ . .
T Consensus 141 i~d---r-K~il~lyn~a~~~~~g~~e~~~~Rl~q~i~~y~~P~kkL~eef---~p~~~~i~~aL~Sl~~~~~rr~~~a~ 213 (1116)
T PF09735_consen 141 IED---R-KAILGLYNAAYEMQHGQSEPSFPRLGQMILDYDNPLKKLQEEF---QPHSRRIGSALMSLRPIYPRRNLTAD 213 (1116)
T ss_dssp -TT---H-HHHHHHHHHHHHTTSSS--TTHHHHHHHHHHTSSHHHHHHHHT---TTTHHHHHHHHHGGGGTHHHHS--HH
T ss_pred ccc---H-HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 765 3 7788777743 56668888888877542222211 1222 13333222211 1 2
Q ss_pred Hhccccccccccc-----CCCCCc-chhhhhccccceeee---eeeccccccccchhhhhhhhhhcCCccEEeeccceee
Q psy7356 212 KLRTDDIYHSIVA-----YPLPQH-RSTALANQASMLFVC---LYFDTSVLHNNTANMREVVDKFFPDNWIVSIYMGITV 282 (1083)
Q Consensus 212 rLrsDDiy~q~~~-----yP~p~H-Rs~ala~QasmLyV~---L~F~P~~L~~~~a~MREIVDk~F~DnWVi~~ymG~~v 282 (1083)
.+|++...+.+.. .|...+ ++--+..=..|==.+ .=.||+.|+++ +...++..-.-.+||||++|=-.++
T Consensus 214 ~wR~~~~lsl~~~p~~il~p~~~~~~~~e~lsl~~~~~Wii~g~L~cp~~L~~~-~~~~~l~~~aL~~~~~i~LfRde~l 292 (1116)
T PF09735_consen 214 QWRSAQLLSLISPPADILTPAQTDTMACEYLSLEVMERWIIFGFLVCPQELLQQ-PSILDLWKLALQDGLVITLFRDEVL 292 (1116)
T ss_dssp HHHHTTTT-SSSSGGGTTS----TTHHHHHS-HHHHHHHHHHHHHHTTHHHHH--HHHHHHHHHHHTT-SEEEEETTEEE
T ss_pred HHHhcCcccCCCChhhccCCccCcchhhhhhhhhhHHHHHhheeeechhhhcCC-hHHHHHHHHHhccCcEEEEeccchh
Confidence 4555555444331 111111 111111111111112 22589999664 4666889999999999999999999
Q ss_pred eccccccccHHHHHHhhhccchhhHHHHHH--------HHH---HHHHHHHHHHHHHhhh--cccchhhhccCcHHHHHH
Q psy7356 283 QLIDAWEPYRAAKLALSNSLETSNVKQYST--------FHT---DRIIKLTSQTNQLLKD--GALTEENVLDNTNKILNL 349 (1083)
Q Consensus 283 nL~~~W~~ykAA~~AL~ntl~~~~vk~~~~--------~~~---~~~~~~~~~~~~~l~E--G~L~ee~vLdni~~l~~~ 349 (1083)
|+-+.-+.|=.-+-.- .-..+.||+..+ .|+ .-+...++++-.+++. |-| --+++-++.-
T Consensus 293 ~iH~~~~~~~~~~k~~--~Kr~~~vkE~~~~A~~~~~~~HreRR~~Lr~~Lkel~~l~~dqPgLL-----gPK~~~v~~a 365 (1116)
T PF09735_consen 293 NIHKEIETFFESKKGY--SKRLSEVKECAEQALQNAGDLHRERRRYLRQALKELVLLLTDQPGLL-----GPKALMVFAA 365 (1116)
T ss_dssp EHHHHHHHHHTT-GGG--TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-GGGG-----TTTHHHHHHH
T ss_pred hHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhhCcccc-----chhHHHHHHH
Confidence 9988665541100000 001111222221 222 2222233333333321 233 2455556666
Q ss_pred HhhhhhhhhhhhhccCCCccccccccchhhhHHHHHHHhhCCChhHHHHHHHhhhHhHHHHH-------HHHHHHHHhHH
Q psy7356 350 ARECNVTIRWLVLHTSSNHETISGVAASKKSKQIKDIVSNNINMSDVFQLILNTSEFELKIK-------ELLKALLEDKQ 422 (1083)
Q Consensus 350 iR~~Nv~lRWl~LHt~~~~~~~~~~~~~k~~r~l~~~v~~~~~~~~l~~LLL~taqlE~~lk-------~~~~~lL~~K~ 422 (1083)
+.=+.-=+-|++=|+-..+ |..||-+. ..++.+..|-.||--..++...++ +-|-+-|.+=.
T Consensus 366 Ls~ArdEV~W~~rH~~~~p------~~~~k~~~-----~~d~~D~~i~eLL~~m~eLr~Lv~k~~~viqrYy~~yl~~~D 434 (1116)
T PF09735_consen 366 LSFARDEVLWLFRHNDNPP------PKKKKKKT-----DEDYIDRQIPELLFYMEELRSLVRKYSQVIQRYYVQYLSGYD 434 (1116)
T ss_dssp HHHHHHHHHHHHHHHHHS-------------SS-----TTTT--TTHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHccCCCC------ccccccCC-----ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 6667777899999975441 01111111 223555566666665555544433 33333333311
Q ss_pred H--------hHHHhHHHHHHHHHHHHHHccCCCCCCccccch-----hHH-HHHHHHHHhh---hhcccCCcchhhHHHH
Q psy7356 423 N--------KWNSCKQECNERLNYLIELFSGAKPLPKVHKNQ-----QLE-KWFSEINSHL---ESLNFSDEMGSVQKIV 485 (1083)
Q Consensus 423 ~--------~W~~~K~e~~erm~eLae~FsG~~pL~r~~kne-----~L~-~WF~~is~~I---~~Ld~~d~~~agRkI~ 485 (1083)
. .-..|=.|..-.|..+.+-++.-. ...++.++ .|+ +||+-.+-.= .++...+. ++
T Consensus 435 a~~L~~~i~~~~~~~eee~~ilss~~~~l~~l~-~~~~e~~~~~Df~~lRlDW~RLqa~~S~~~s~l~L~~~----~~-- 507 (1116)
T PF09735_consen 435 ALVLNELIQNLSVCPEEESVILSSFVQTLSSLS-VKQVENGEKFDFSGLRLDWFRLQAYTSSSRSPLQLREN----EK-- 507 (1116)
T ss_dssp HHHHHHHHTT-S---HHHHHHHHHHHHHHHT---HHHHHTT-----HHHHHHHHHHHHHHHSTT-SS-GGG-----HH--
T ss_pred HHHHHHHHHhcCCCCchHhHHHHHHHHHHHhCC-ccccccCCcCchHHHHHHHHHHHHHHhhcccccCccch----HH--
Confidence 1 112233344444444444443211 11111111 233 5665543211 11111111 11
Q ss_pred HHHHHHHHHHhhhCcccchHHHHHHHHHHHHHHHHHHHccccchhhhhhhhhcccchhhhhhhhhHHHHHHHhhhCCchH
Q psy7356 486 QFIQALDSVKEFHGLSSNAQVEQWIDESIKYLNIMVRSVNVKDKVMIHLQIIADLSYAWKLIDQFTPLMQDAIKNEPSLL 565 (1083)
Q Consensus 486 qLiqALeeVqefhql~~nlqVkQ~L~etr~~L~~M~r~inike~vl~~i~~i~D~SYAW~lid~yt~~mQ~~Ik~~P~~v 565 (1083)
|...+.-+ +.++=.| +..-..+.=.||+|=-|-.=..|+.....-+.. | .-
T Consensus 508 -L~~~mN~i-------------------------~fHsk~V-D~lde~L~etSdLs~lcfY~~~fe~~F~~~l~~-p-sq 558 (1116)
T PF09735_consen 508 -LASLMNTI-------------------------VFHSKMV-DSLDELLRETSDLSILCFYPRFFEKMFRQCLEG-P-SQ 558 (1116)
T ss_dssp -HHHHHHHH-------------------------HHHHHHH-H-HHHHHHHHH--GGGGG-HHHHHHHHHHHHHS-H-HH
T ss_pred -HHHHHHHH-------------------------HHHHhhh-chHHHHHHHhcchhheeehhHHHHHHHHHHHhc-c-cc
Confidence 11111111 1111111 223333445678887776555555555555443 4 22
Q ss_pred HHHHHHHHHHHhhccc------cccccccccCcchhHHHHHhHHHHHHHHHHHHhhcchHHHHHHHHHHHh-----hccc
Q psy7356 566 IKLRALFLKLSTSLEI------PLLRINQAESEDLISVSQYYSNELVTYMQHVLQIIPQTMFTLMADITNL-----QTNV 634 (1083)
Q Consensus 566 ~kLRa~FLKLaS~L~l------PLlRI~Qa~S~Dl~sVS~yYS~eLv~~vR~VLqIIP~smF~iL~~Ii~l-----qT~~ 634 (1083)
..=...|++++|.-=- |=.|=.-. ++-.+..+-+=.|+++.++.++..|=..-..+-+|..-- ....
T Consensus 559 ~ry~iaf~~icshF~~~~h~lcPEE~~~i~--~~sl~~a~~fLeeiak~~~~~i~~l~~e~~~L~~qLlP~~aA~~~~~~ 636 (1116)
T PF09735_consen 559 PRYSIAFPLICSHFPNCLHELCPEEREHIG--ERSLSLANSFLEEIAKQTSNVINQLCSEQCSLEDQLLPKHAARLISQA 636 (1116)
T ss_dssp HGGGGHHHHHGGGGGGG--TT-GGGHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSGGGGHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhCCccCccchHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 3334567777664321 11111111 245666677777788888777766554422222211110 0011
Q ss_pred cccCCCc-------cchhHHhhhhchhhHHHHH---HHHHHHHHHhHHHhhhhcccceeEEeChhhhhHhHHHHHHHHHH
Q psy7356 635 MLEVPTR-------LDKDKLKDYAQLDTRFEIA---HLTHSISVFTQGILRMKSTLVGIVCIDPKQLLHNGIKKQLAETI 704 (1083)
Q Consensus 635 ike~Ptr-------leK~~Lk~yAQl~eR~~lA---~lT~~ISvfTeGIL~M~~TlvGvIevDPkqLLEDGIRKELV~~i 704 (1083)
-.+=|++ .+..+=-.=+....|..+- ++.-...-+-..+-.|.+--|==-.+.|++-|-+++..-+.+.+
T Consensus 637 ~~~k~~k~~~k~~~~~~~~PG~ES~r~~r~~~t~ld~l~~~L~eLc~aln~~~~I~V~dh~f~PrEyL~~~Le~~f~~~l 716 (1116)
T PF09735_consen 637 RNKKKKKQKNKKGEPERVKPGAESYRKNRENLTMLDKLHQALTELCSALNHFPSIVVFDHVFVPREYLREHLENRFRRAL 716 (1116)
T ss_dssp TT-----------------TTGGG--S-TTS--HHHHHHHHHHHHHHHHTS-S-EEETTEEE-HHHHHHHHHHHHHHHHH
T ss_pred HhhhcccccCcCCCCCCCCCchhccCCCchhhhhHHHHHHHHHHHHHHHhcCCCeEEEeeEeeHHHHHHHHHHHHHHHHH
Confidence 1111111 0000011112233333222 33333334444455555555555566899999888877777766
Q ss_pred HHHHhccccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHhhhhHHhhhccCCCCC-
Q psy7356 705 LTELNKGLTFNTKSKTNKTDLMTKLGQLAVVMDGHKRSFEYIQDYVGIYGLKVWYEVLNQVIEETVSSEIDSLSSTSGC- 783 (1083)
Q Consensus 705 a~alh~~LiF~~k~~~~~~el~~~L~~L~~~~~g~rrSFEYIQDYvnI~GLkIW~eE~sRIInynVE~Ecn~FlS~~s~- 783 (1083)
..+. .+++..+ -.++=..|=..+..|.....=++-||+|+=- |+|+--.=||+..==+.+..
T Consensus 717 ~~~~----~~~~~~~-----~i~RPS~ll~~l~a~m~vlq~le~~v~iDvt--------~~~~~vLLqqtq~~d~~g~~t 779 (1116)
T PF09735_consen 717 VSMV----MYNPDDQ-----EIARPSELLSSLRAYMSVLQSLENYVSIDVT--------RLFRNVLLQQTQPVDSHGEKT 779 (1116)
T ss_dssp HHHT------BTTTT-----B---HHHHHHHHHHHHHHHHHGGGTSS--HH--------HHHHHHHHHTTSSB-TTS-B-
T ss_pred HHHh----cCCCCCC-----CCCCHHHHHHHHHHHHHHHHHHHHHhcCCHH--------HHHHHHHHHhcCCcccCCccc
Confidence 6653 4444321 2234555556667777788888999999854 45544444553111132222
Q ss_pred --CchHHHHHH-HHhhcCCCcceeecCcccccccCCC------ccccchHHHHHHHHHhcccccchhhhHHHHHHHHHHH
Q psy7356 784 --TFVGRLADE-LVSMTDPKQSMYVENTTAWYNVKTQ------KEIFNMKIFSLIIKAIGISGLVGLDNVLGFRIVKNIQ 854 (1083)
Q Consensus 784 --nFiGRLa~e-il~iTDPk~T~Yi~~~~~WyD~kt~------~Ev~~~~~fs~l~~alg~~GL~gLDrL~~f~iv~eLq 854 (1083)
+.++.--.| |+|--..-..+|.+...+.....+- .|..+..-...+.+-+||+|+--||+-+.-+|+..+.
T Consensus 780 i~~~yt~WYle~llr~~s~~~ivfSp~~~~FvS~~~~~~~f~ae~ytD~~ELrAL~~LiGpyGvk~l~~~L~~~va~~v~ 859 (1116)
T PF09735_consen 780 ITTLYTNWYLENLLRDASNGGIVFSPSRKCFVSSRPEQGPFNAEEYTDLNELRALVELIGPYGVKFLDENLMWHVASQVN 859 (1116)
T ss_dssp HHHHHHHHHHHTHHHHHHTTSEEEETTTTEEEE-SSS---S-THHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCcEEeecHHHhhhCCCCccCCcChHHcCCHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 333333333 6666667788999999998875541 2456777778899999999999999999998888777
Q ss_pred HHHHHHHhhcCCCchHHHHHHHhhhcCCCCCCCCCCcCcHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhhhc
Q psy7356 855 SVFSQLFNYSNDKPCQDILAQMSKELSPNTNPISNPTKLYPQYLSKMNKYLMGVNDSLIQIGQLQILRQLLRHELSSCAQ 934 (1083)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~l~~l~~~l~p~~~~~~~~~k~Y~~~~~~~~~~~~~~~~~i~~IGQ~QLLR~~Ia~eL~~s~K 934 (1083)
.+-+.+. ... ++|..+...... ...-..+.+++ +..-.++..+..||++==+|++....|+.--.
T Consensus 860 elkk~v~----~N~--d~L~~l~~~~~~--------~~~~~~~~~~l-~~~d~vl~r~i~iG~iL~FR~ll~eAl~~Vl~ 924 (1116)
T PF09735_consen 860 ELKKLVR----QNR--DVLEQLRSNFDK--------PEKMEELLKQL-TDLDNVLQRMIIIGVILSFRQLLQEALRDVLE 924 (1116)
T ss_dssp HHHHHHH----TTH--HHHHHHHH-TT---------HHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----HhH--HHHHHHHHhcCC--------HHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6654444 233 677777765532 11122333332 24668999999999999999999988887766
Q ss_pred ccCchHHHHHHHHhHHHHHHHHhhhcCCCCCCCCCchHHHHHHHHHHHHhcccCccccceecc---CCCC-----ChhHH
Q psy7356 935 FESKNLHLCLETLDKSLLNDLRLYYSKEGMSLPTDNQELMTSICAYLKWIGQDNPYHKIYVTS---RNIP-----YFPLF 1006 (1083)
Q Consensus 935 ~~s~~L~~aL~tlN~all~di~~h~~dp~~p~p~~~~~ll~eL~~~L~~~Gi~dPl~kIYitt---~~~~-----~l~l~ 1006 (1083)
-....|.++ +.++..|+. | .|.. ..+-.+.+.=.++|+..+-.-.++.. .... ..+..
T Consensus 925 ~~~Pfl~s~--------i~~~~~~~~-~-~~~~----~~~l~v~~lA~~aG~~~~vD~~lv~al~~~~~~~~e~~~~~~l 990 (1116)
T PF09735_consen 925 RRIPFLMSS--------IEDLKEHIP-N-GPDI----KEFLSVDELASAAGLPCDVDPALVRALRAQKGDPDEEYKISWL 990 (1116)
T ss_dssp HH-HHHHHH--------HHHHHH--------------SSHHHHHHHHHHTT---SS-HHHHHHHT-----HHHHHHHHHH
T ss_pred ccCchHHHH--------HHHHHHhCC-C-CCCh----hHHHHHHHHHHhcCCCCCCCHHHHHHHHHhCCCchHhhhhhHH
Confidence 666677654 445555654 2 1211 12122444457889887667666643 1112 36667
Q ss_pred HHHHHHHhccccccccc
Q psy7356 1007 LFLYSLSVLSKVTYSSS 1023 (1083)
Q Consensus 1007 lflf~ls~l~k~~y~~~ 1023 (1083)
++.|+-+.+|.....++
T Consensus 991 Llvf~avsl~~~~~~~~ 1007 (1116)
T PF09735_consen 991 LLVFLAVSLPTLAMWDS 1007 (1116)
T ss_dssp HHHHHHHHGGGGGG-GG
T ss_pred HHHHHHHHhHhccCCCc
Confidence 77777788887766553
No 4
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=65.59 E-value=3.7 Score=32.95 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=18.4
Q ss_pred ccchhhhhh-hhhHHHHHHHhhh
Q psy7356 539 DLSYAWKLI-DQFTPLMQDAIKN 560 (1083)
Q Consensus 539 D~SYAW~li-d~yt~~mQ~~Ik~ 560 (1083)
=|.|||.+| ..+...+|++|.-
T Consensus 4 ~FnyAw~Lv~S~~~~d~~~Gi~l 26 (35)
T PF14852_consen 4 QFNYAWGLVKSNNREDQQEGIAL 26 (35)
T ss_dssp HHHHHHHHHHSSSHHHHHHHHHH
T ss_pred hhHHHHHHhcCCCHHHHHHHHHH
Confidence 378999999 6888889988863
No 5
>KOG1917|consensus
Probab=63.05 E-value=4.9e+02 Score=34.62 Aligned_cols=421 Identities=15% Similarity=0.234 Sum_probs=232.8
Q ss_pred chhHHHHHhHHHHHHHHHHHHhh------------cchHHHHHHHHHHHhhccccccCCCccchh--HHhhhhchhhHHH
Q psy7356 593 DLISVSQYYSNELVTYMQHVLQI------------IPQTMFTLMADITNLQTNVMLEVPTRLDKD--KLKDYAQLDTRFE 658 (1083)
Q Consensus 593 Dl~sVS~yYS~eLv~~vR~VLqI------------IP~smF~iL~~Ii~lqT~~ike~PtrleK~--~Lk~yAQl~eR~~ 658 (1083)
|..+.-+=+=.|+.+-++..+.+ .|++.-..+.+-...++..-| |+|-+-+ +=-+=+--+.|.-
T Consensus 591 ~al~~cnsflEe~akq~~nli~~ic~eq~~La~QLlPkhcA~~ls~a~~~k~~s~k--~~k~~~~r~kpG~ESyrknr~~ 668 (1125)
T KOG1917|consen 591 RALSYCNSFLEEMAKQLSNLITIICSEQCTLADQLLPKHCAKTLSNASNKKKKSQK--SPKGEPERDKPGHESYRKNRKS 668 (1125)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHhhhCHHHHHHHHHHHHHhhccCCC--CCCCCCcCCCCccccccchhhh
Confidence 44455555556777777776654 477777777777777777666 5554322 2112222334555
Q ss_pred HHHHHHHHHHHhHH---HhhhhcccceeEEeChhhhhHhHHHHHHHHHHHHHHhccccccCC----CCCchhhHHHHHHH
Q psy7356 659 IAHLTHSISVFTQG---ILRMKSTLVGIVCIDPKQLLHNGIKKQLAETILTELNKGLTFNTK----SKTNKTDLMTKLGQ 731 (1083)
Q Consensus 659 lA~lT~~ISvfTeG---IL~M~~TlvGvIevDPkqLLEDGIRKELV~~ia~alh~~LiF~~k----~~~~~~el~~~L~~ 731 (1083)
+-.+-..+-.+||= +-.|.+--|===-.=|++-|-.-+--.+.+.+- ..+.||.. +++ +|+..
T Consensus 669 lt~lDklh~~LteLc~~ln~~~~i~V~eHtf~prEYL~~~Le~rf~r~~v----gm~~~nqtt~ei~kP--SeLla---- 738 (1125)
T KOG1917|consen 669 LTMLDKLHTALTELCFALNYVPPICVWEHTFAPREYLRQHLEGRFKRRLV----GMLMYNQTTQEIAKP--SELLA---- 738 (1125)
T ss_pred hccHHHHHHHHHHHHHHhccCCceeEEeecccHHHHHHHHHHHHHHHHHH----HHHHcCCccccccCh--HHHHH----
Confidence 54444444445543 333444333322346888876655555555544 44667653 343 55554
Q ss_pred HHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHhhhhHHhhhccCCCCCC----chHHHHHHHHhhcCCCcceeecC
Q psy7356 732 LAVVMDGHKRSFEYIQDYVGIYGLKVWYEVLNQVIEETVSSEIDSLSSTSGCT----FVGRLADELVSMTDPKQSMYVEN 807 (1083)
Q Consensus 732 L~~~~~g~rrSFEYIQDYvnI~GLkIW~eE~sRIInynVE~Ecn~FlS~~s~n----FiGRLa~eil~iTDPk~T~Yi~~ 807 (1083)
.+..|..-..=+..||.++ .+|.|+-..=|+..+|=|.+..| .-.--..-|||-..--+-+|.++
T Consensus 739 ---~vrayM~vlq~leq~v~~D--------itrvir~~LLqQtq~lDs~gEqTi~~lytnWYlE~LLR~vSsg~Iv~sp~ 807 (1125)
T KOG1917|consen 739 ---SVRAYMGVLQSLEQYVSID--------ITRVIRNILLQQTQSLDSHGEQTIAALYTNWYLEVLLRRVSSGHIVFSPA 807 (1125)
T ss_pred ---HHHHHHHHHHHHHHHhhhH--------HHHHHHHHHHHhhhcccCCCchhHHHHHHHHHHHHHHHHhcCCcEEechH
Confidence 2223333333344588775 68888888888877765632111 01122356677767777788887
Q ss_pred cccccccCC-------CccccchHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHhhhc
Q psy7356 808 TTAWYNVKT-------QKEIFNMKIFSLIIKAIGISGLVGLDNVLGFRIVKNIQSVFSQLFNYSNDKPCQDILAQMSKEL 880 (1083)
Q Consensus 808 ~~~WyD~kt-------~~Ev~~~~~fs~l~~alg~~GL~gLDrL~~f~iv~eLq~~~~~~~~~~~~~~~~~~l~~l~~~l 880 (1083)
+.++-.... -+|+-+..-...+.+.+|++|+-=||+.+-.+++...+-+-+.+. ... ++|.......
T Consensus 808 ~kafvs~~~e~~~~f~aee~SDl~ElrAlvel~GpYGvk~Lse~LmwHvasqV~elkklv~----tn~--d~L~~~rssf 881 (1125)
T KOG1917|consen 808 MKAFVSLPPEGELGFNAEEYSDLSELRALVELLGPYGVKFLSEMLMWHVASQVNELKKLVV----TNK--DVLEQARSSF 881 (1125)
T ss_pred HHhhccCCccccCCCChhhcCCHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHHHHHHH----hhH--HHHHHHHHhC
Confidence 776654333 134667777788889999999999999999999876654433333 122 6666666544
Q ss_pred CCCCCCCCCCcCcHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhhhcccCchHHHHHHHHhHHHHHHHHhhhc
Q psy7356 881 SPNTNPISNPTKLYPQYLSKMNKYLMGVNDSLIQIGQLQILRQLLRHELSSCAQFESKNLHLCLETLDKSLLNDLRLYYS 960 (1083)
Q Consensus 881 ~p~~~~~~~~~k~Y~~~~~~~~~~~~~~~~~i~~IGQ~QLLR~~Ia~eL~~s~K~~s~~L~~aL~tlN~all~di~~h~~ 960 (1083)
.. ...-+...++.+ ...+.+....-|||+-..|.+..-.|+-----+...|. |-+.++..|-.
T Consensus 882 dk--------pd~m~~~~~~l~-~~D~VL~rmtiiGvil~Frdll~Ealr~Vle~~~pfL~--------ssi~~l~ehip 944 (1125)
T KOG1917|consen 882 DK--------PDRMKRLLKRLQ-IADTVLQRMTIIGVILSFRDLLHEALRDVLESHIPFLH--------SSIEDLKEHIP 944 (1125)
T ss_pred CC--------HHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHh--------hhHHHHHhhCC
Confidence 21 223334444333 24566677778999999998887777643333334454 34456666643
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHhcccCcccccee---ccCCC-------CChhHHHHHHHHHhcccccccccccccccc
Q psy7356 961 KEGMSLPTDNQELMTSICAYLKWIGQDNPYHKIYV---TSRNI-------PYFPLFLFLYSLSVLSKVTYSSSQDLFLTK 1030 (1083)
Q Consensus 961 dp~~p~p~~~~~ll~eL~~~L~~~Gi~dPl~kIYi---tt~~~-------~~l~l~lflf~ls~l~k~~y~~~l~~L~~k 1030 (1083)
+. .|.- ...=..|+ -.++|..=|...-.+ ..+.+ ...+.+|..|+-..+|++..+..-+==...
T Consensus 945 ~~-~~iK--v~~~~~em---asaaGv~cdvDp~lV~ai~~~k~~~~peeey~~acLLmvfvAvsip~la~n~~S~y~~ei 1018 (1125)
T KOG1917|consen 945 EE-DDIK--VAIRRIEM---ASAAGVACDVDPALVRAILSQKPEIHPEEEYKSACLLMVFVAVSIPSLAWNDTSFYSIEI 1018 (1125)
T ss_pred Cc-cchh--HHHHHHHH---HhhcCCCCCCCHHHHHHHHHhCCCCCchHhhhhhHHHHHHHHHhcchhccCCccccCccc
Confidence 21 1100 00001122 234555433333332 22222 246788889999999999988543222222
Q ss_pred cC-CCCCCCCchh-----HHHHHHHHHhhc-CcchHHHHHHHHH
Q psy7356 1031 KG-YEYCHTDCVV-----VLVGLHTLFHQF-HKDIGEQYLVYLC 1067 (1083)
Q Consensus 1031 ~~-~d~~~~D~~p-----~vvG~~TlL~QF-h~~~~~~fl~~l~ 1067 (1083)
.+ .+. +-|-| .+..+.|+=+|- =+++++.|++.-+
T Consensus 1019 ~g~~NN--iHCla~aIn~i~aALftlh~~sdie~rmkeflalaS 1060 (1125)
T KOG1917|consen 1019 DGHSNN--IHCLAKAINQIIAALFTLHHQSDIEDRMKEFLALAS 1060 (1125)
T ss_pred cccccc--hHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHH
Confidence 22 123 22222 333445554443 3457888886544
No 6
>cd07910 MiaE MiaE tRNA-modifying nonheme diiron monooxygenase, ferritin-like diiron-binding domain. MiaE is a nonheme diiron monooxygenase that catalyzes the posttranscriptional allylic hydroxylation of a modified nucleoside in tRNA called 2-methylthio-N-6-isopentenyl adenosine (ms2i6A). ms2i6A is found at position 37, next to the anticodon at the 3' position in almost all eukaryotic and bacterial tRNA's that read codons beginning with uridine. The miaE gene is absent in Escherichia coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.
Probab=50.96 E-value=1.4e+02 Score=32.42 Aligned_cols=101 Identities=16% Similarity=0.246 Sum_probs=61.0
Q ss_pred cccccHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhccCcHHHHHHHhhhhhhhhhhhhccCC
Q psy7356 287 AWEPYRAAKLALSNSLETSNVKQYSTFHTDRIIKLTSQTNQLLKDGALTEENVLDNTNKILNLARECNVTIRWLVLHTSS 366 (1083)
Q Consensus 287 ~W~~ykAA~~AL~ntl~~~~vk~~~~~~~~~~~~~~~~~~~~l~EG~L~ee~vLdni~~l~~~iR~~Nv~lRWl~LHt~~ 366 (1083)
+|.--|||.+||+=...-..=.++. .....+.+| | |.|...++..|++-++.++..-
T Consensus 27 A~CE~KAA~~A~~L~~rY~~~~~Lv-----------~~m~~LarE----E---L~HFeqV~~im~~Rgi~l~~~~----- 83 (180)
T cd07910 27 AHCEKKAASSAMSLIFRYPEKPELV-----------EAMSDLARE----E---LQHFEQVLKIMKKRGIPLGPDS----- 83 (180)
T ss_pred HHHHHHHHHHHHHHHHHcCCcHhHH-----------HHHHHHHHH----H---HHHHHHHHHHHHHcCCCCCCCC-----
Confidence 6788899999997533222222222 222222221 1 4555566668777777664321
Q ss_pred CccccccccchhhhHHHHHHHhhCCChhHHHHHHHhhhHhH----------------HHHHHHHHHHHHh
Q psy7356 367 NHETISGVAASKKSKQIKDIVSNNINMSDVFQLILNTSEFE----------------LKIKELLKALLED 420 (1083)
Q Consensus 367 ~~~~~~~~~~~k~~r~l~~~v~~~~~~~~l~~LLL~taqlE----------------~~lk~~~~~lL~~ 420 (1083)
...-.++++..|.+. .|..+++-||=.|=.| -+|++.|..|+.+
T Consensus 84 ---------~~~Ya~~L~k~vR~~-~p~~llD~Llv~alIEARScERF~lLa~~l~D~eL~~FY~~Ll~S 143 (180)
T cd07910 84 ---------KDPYASGLRKLVRKG-EPERLLDRLLVAALIEARSCERFALLAPALPDPELKKFYRGLLES 143 (180)
T ss_pred ---------CCHHHHHHHHHcccC-ChHHHHHHHHHHHHHHHHhHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 134566787777665 7888888888776544 4578888888865
No 7
>KOG2767|consensus
Probab=49.01 E-value=9.2 Score=44.58 Aligned_cols=32 Identities=31% Similarity=0.600 Sum_probs=25.8
Q ss_pred hheecC-----------CC--CC--CCHHHHHHHhhcCCCCCCChhhhhc
Q psy7356 163 SYYRYS-----------LN--KS--QNFDEVCQLFSSSKKGNGYPENVFS 197 (1083)
Q Consensus 163 ayyR~~-----------~~--~~--sn~d~vc~Llr~~~~p~~YPe~yF~ 197 (1083)
+||||+ |. .+ .|+.+|.+-| .||+-||--||.
T Consensus 12 ~FYRYKMPrl~aKvEGKGNGIKTvIvNm~eIakAL---~RPp~Y~tKyFG 58 (400)
T KOG2767|consen 12 PFYRYKMPRLQAKVEGKGNGIKTVIVNMVEIAKAL---GRPPLYPTKYFG 58 (400)
T ss_pred hhhhhccchhhhhccccCCCeeeeeecHHHHHHHh---CCCCCcccccce
Confidence 689998 22 22 8999998888 499999999995
No 8
>PF14659 Phage_int_SAM_3: Phage integrase, N-terminal SAM-like domain; PDB: 2KD1_A 2KOB_A 2KHQ_A 3LYS_E 2KIW_A 2KKP_A.
Probab=38.07 E-value=77 Score=26.33 Aligned_cols=55 Identities=13% Similarity=0.359 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhHHHhHHHhHHHHHHHHHH--HHHHccCCCCCCccccchhHHHHHHHHH
Q psy7356 410 IKELLKALLEDKQNKWNSCKQECNERLNY--LIELFSGAKPLPKVHKNQQLEKWFSEIN 466 (1083)
Q Consensus 410 lk~~~~~lL~~K~~~W~~~K~e~~erm~e--Lae~FsG~~pL~r~~kne~L~~WF~~is 466 (1083)
+.+.+..=++.+..+|...-...-+.+-+ +...| |..|+..+.. ..+++|+.+++
T Consensus 2 f~~~~~~wl~~~~~~~~~~T~~~y~~~~~~~i~p~~-g~~~i~~It~-~~i~~~~~~l~ 58 (58)
T PF14659_consen 2 FSEFFEEWLEEYKSNLKPSTYKNYKSIIKNHILPYF-GNKKIKDITP-RDIQNFINELL 58 (58)
T ss_dssp HHHHHHHHHHHHTCTSSHHHHHHHHHHHHHHHHHHT-TSSBGGG--H-HHHHHHHHHH-
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH-CcCcHHHCCH-HHHHHHHHHcC
Confidence 45666777777666666655555543333 56778 8899999955 99999998874
No 9
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=35.07 E-value=46 Score=30.99 Aligned_cols=33 Identities=24% Similarity=0.474 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHccccchhhhhhhhhcccchhhhhhhh
Q psy7356 506 VEQWIDESIKYLNIMVRSVNVKDKVMIHLQIIADLSYAWKLIDQ 549 (1083)
Q Consensus 506 VkQ~L~etr~~L~~M~r~inike~vl~~i~~i~D~SYAW~lid~ 549 (1083)
++.|+.|++-||. +.+ .+...+.+||||..+|.
T Consensus 35 A~~Y~~D~~~fl~--------~gD---~v~Ala~~sYa~GwLDA 67 (75)
T PF04010_consen 35 AESYLEDGKYFLE--------KGD---YVNALACFSYAHGWLDA 67 (75)
T ss_dssp HHHHHHHHHHHHH--------TT----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--------CCC---HHHHHHHHHHHHHHHHH
Confidence 5679999998886 333 34567789999999874
No 10
>PHA01516 hypothetical protein
Probab=31.43 E-value=24 Score=33.42 Aligned_cols=28 Identities=32% Similarity=0.582 Sum_probs=20.7
Q ss_pred hhhcccchhhHHHHH-----------HHHHHhhhhHHhhhc
Q psy7356 748 DYVGIYGLKVWYEVL-----------NQVIEETVSSEIDSL 777 (1083)
Q Consensus 748 DYvnI~GLkIW~eE~-----------sRIInynVE~Ecn~F 777 (1083)
||-|.+||.+|-|-+ .|-+.+. .|||.|
T Consensus 48 dycn~~glqm~de~ltd~dleem~ltdrwvdwy--~e~~~~ 86 (98)
T PHA01516 48 DYCNANGLQMWDESLTDQDLEEMELTDRWVDWY--SECQCY 86 (98)
T ss_pred cccCccchhhhhhhcchhHHHHccchhhhhhhh--hhhccc
Confidence 899999999997644 5666666 455544
No 11
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=30.96 E-value=6.3e+02 Score=26.31 Aligned_cols=61 Identities=18% Similarity=0.318 Sum_probs=46.7
Q ss_pred HHHhhhCCchHHHHHHHHHHHHhhccccccccccccCcchhHHHHHhHHHHHHHHHHHHhh
Q psy7356 555 QDAIKNEPSLLIKLRALFLKLSTSLEIPLLRINQAESEDLISVSQYYSNELVTYMQHVLQI 615 (1083)
Q Consensus 555 Q~~Ik~~P~~v~kLRa~FLKLaS~L~lPLlRI~Qa~S~Dl~sVS~yYS~eLv~~vR~VLqI 615 (1083)
++.|..--..+...+.-|-.....+..-+.|.++....|+.+.-.-|...-+.|-+++++.
T Consensus 151 ~~~i~~~e~~~~~~~~~~~~i~~~~~~El~~f~~~~~~dlk~~l~~~~~~qi~~~~~~~~~ 211 (218)
T cd07596 151 EEELEEAESALEEARKRYEEISERLKEELKRFHEERARDLKAALKEFARLQVQYAEKIAEA 211 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445556777777788888888888888888889999999999999998888875
No 12
>KOG4302|consensus
Probab=22.31 E-value=1.8e+03 Score=28.71 Aligned_cols=202 Identities=14% Similarity=0.163 Sum_probs=115.0
Q ss_pred HHHHHHhhCCChhHHHHHHHhhhHhHHHHHHHHHHHHHhHHHhHHHhHHHHHHHHHHHHHHcc--CCCCCCcc---ccch
Q psy7356 382 QIKDIVSNNINMSDVFQLILNTSEFELKIKELLKALLEDKQNKWNSCKQECNERLNYLIELFS--GAKPLPKV---HKNQ 456 (1083)
Q Consensus 382 ~l~~~v~~~~~~~~l~~LLL~taqlE~~lk~~~~~lL~~K~~~W~~~K~e~~erm~eLae~Fs--G~~pL~r~---~kne 456 (1083)
.+.|.|.. +.++.+++|+ ++|....++|+.+++.=...=.+..++....=.+|++.=+ |+.+.-.. +...
T Consensus 25 ~IW~~igE--~~~e~d~~l~---~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~ 99 (660)
T KOG4302|consen 25 KIWDEIGE--SETERDKKLL---RLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEG 99 (660)
T ss_pred HHHHHhCc--cHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCc
Confidence 44454422 3445555554 6899999999988887766666666666666666666655 54443222 3444
Q ss_pred hHHHHHHHHHHhhhhcccCCcchhhHHHHHHHHHHHHHHhhhCcccchHHHHHHHHHHHHHHHHHHHccccchhhhhhhh
Q psy7356 457 QLEKWFSEINSHLESLNFSDEMGSVQKIVQFIQALDSVKEFHGLSSNAQVEQWIDESIKYLNIMVRSVNVKDKVMIHLQI 536 (1083)
Q Consensus 457 ~L~~WF~~is~~I~~Ld~~d~~~agRkI~qLiqALeeVqefhql~~nlqVkQ~L~etr~~L~~M~r~inike~vl~~i~~ 536 (1083)
.|..|...+...++.|- . .-.+++.|+..-.+++|..-+. |.+.+......
T Consensus 100 tLke~l~~l~~~le~lr---~-qk~eR~~ef~el~~qie~l~~~-------------------------l~g~~~~~~~~ 150 (660)
T KOG4302|consen 100 TLKEQLESLKPYLEGLR---K-QKDERRAEFKELYHQIEKLCEE-------------------------LGGPEDLPSFL 150 (660)
T ss_pred cHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHH-------------------------hcCCccCCccc
Confidence 89999999999888872 1 2224555555555554422211 11112222223
Q ss_pred hcccchhh-hhhhhhHHHHHH---HhhhCCchHHHHHHHHHHHHhhccccccccccccCcchhHHH----HHhHHHHHHH
Q psy7356 537 IADLSYAW-KLIDQFTPLMQD---AIKNEPSLLIKLRALFLKLSTSLEIPLLRINQAESEDLISVS----QYYSNELVTY 608 (1083)
Q Consensus 537 i~D~SYAW-~lid~yt~~mQ~---~Ik~~P~~v~kLRa~FLKLaS~L~lPLlRI~Qa~S~Dl~sVS----~yYS~eLv~~ 608 (1083)
++|.+=.= +-++.|-..+++ -...-=.-|+.++..-.+|.+.|++++.-.-..-.++|.+-. .+-|.|.-+.
T Consensus 151 ~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~~~~~~is~etl~~ 230 (660)
T KOG4302|consen 151 IADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDHDGEQSRSISDETLDR 230 (660)
T ss_pred ccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhccCcccccCCHHHHHH
Confidence 33332211 344555554442 111112347788999999999999999855433445555544 4556666666
Q ss_pred HHHHHhhcc
Q psy7356 609 MQHVLQIIP 617 (1083)
Q Consensus 609 vR~VLqIIP 617 (1083)
+.+.++..=
T Consensus 231 L~~~v~~l~ 239 (660)
T KOG4302|consen 231 LDKMVKKLK 239 (660)
T ss_pred HHHHHHHHH
Confidence 665555443
No 13
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=22.09 E-value=2.1e+02 Score=28.88 Aligned_cols=103 Identities=16% Similarity=0.304 Sum_probs=64.2
Q ss_pred HHHHHHHHHhHHHhHHHhHHHHHHHHHHHHHHccCCCCCCccccchhHHHHHHHHHHhhhhcccCCcchhhHHHHHHHHH
Q psy7356 411 KELLKALLEDKQNKWNSCKQECNERLNYLIELFSGAKPLPKVHKNQQLEKWFSEINSHLESLNFSDEMGSVQKIVQFIQA 490 (1083)
Q Consensus 411 k~~~~~lL~~K~~~W~~~K~e~~erm~eLae~FsG~~pL~r~~kne~L~~WF~~is~~I~~Ld~~d~~~agRkI~qLiqA 490 (1083)
....+..++.=..+|...+..+.+|...|-.....-+.+... ..+..|..+....+....... ..-.+.+.++.
T Consensus 74 ~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~~~~~---~~l~~wl~~~e~~l~~~~~~~---~~~~~~~~l~~ 147 (213)
T cd00176 74 AEEIQERLEELNQRWEELRELAEERRQRLEEALDLQQFFRDA---DDLEQWLEEKEAALASEDLGK---DLESVEELLKK 147 (213)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCcccCC---CHHHHHHHHHH
Confidence 445566666678899999999999998888776544444333 229999999999998765443 33455555555
Q ss_pred HHHHHhhhCcccch-HHHHHHHHHHHHHHHHHHHcc
Q psy7356 491 LDSVKEFHGLSSNA-QVEQWIDESIKYLNIMVRSVN 525 (1083)
Q Consensus 491 LeeVqefhql~~nl-qVkQ~L~etr~~L~~M~r~in 525 (1083)
++..++ .+ .....+..+...-.+++....
T Consensus 148 ~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~ 177 (213)
T cd00176 148 HKELEE------ELEAHEPRLKSLNELAEELLEEGH 177 (213)
T ss_pred HHHHHH------HHHhchHHHHHHHHHHHHHHHcCC
Confidence 554442 11 234444444444444444443
No 14
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=21.08 E-value=19 Score=35.17 Aligned_cols=67 Identities=12% Similarity=0.158 Sum_probs=40.5
Q ss_pred HHHHHHHhhc-CCCCCCChhhhhcC--CCCCHHHHHHHHHHhcccccccccccCC-CCCcchhhhhccccc
Q psy7356 175 FDEVCQLFSS-SKKGNGYPENVFSR--IPINENLVNMILGKLRTDDIYHSIVAYP-LPQHRSTALANQASM 241 (1083)
Q Consensus 175 ~d~vc~Llr~-~~~p~~YPe~yF~R--vp~~~~~V~~vigrLrsDDiy~q~~~yP-~p~HRs~ala~Qasm 241 (1083)
....|+.|-- ....-+||+..+.. ..--...+..+|.+.+-|-||-.-..=+ ||+|+.++.+.+.++
T Consensus 58 ~~~a~~~lGv~~~~~l~~~D~~~~~~~~~~~~~~l~~~i~~~~p~~V~t~~~~~~gH~DH~~~~~av~~A~ 128 (128)
T PF02585_consen 58 ARAAAEILGVENVIFLDFPDGQLPGWSWEELVRDLEDLIREFRPDVVFTPDPDDGGHPDHRAVARAVREAL 128 (128)
T ss_dssp HHHHHHHCT-EEEEEEEECTTSCTCHHHHHHHHHHHHHHHHH-ESEEEEE-STTS-SHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCceEEEeecCCCCcccccHHHHHHHHHHHHHHcCCCEEEECCCCCCCcHHHHHHHHHHHHHC
Confidence 3344555421 12233466665554 2222345666777888888888777777 999999999888764
No 15
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=20.97 E-value=3.9e+02 Score=26.48 Aligned_cols=85 Identities=15% Similarity=0.202 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhhhCcccchHHHHHHHHHHHHHHHHHHHcccc--chhhhhhhhhcccchhhhhhhhhHHHHHHHhhhCCc
Q psy7356 486 QFIQALDSVKEFHGLSSNAQVEQWIDESIKYLNIMVRSVNVK--DKVMIHLQIIADLSYAWKLIDQFTPLMQDAIKNEPS 563 (1083)
Q Consensus 486 qLiqALeeVqefhql~~nlqVkQ~L~etr~~L~~M~r~inik--e~vl~~i~~i~D~SYAW~lid~yt~~mQ~~Ik~~P~ 563 (1083)
.++..|+.-.+...-...-.....+..+++.+..+..++|-+ .++-.++..+=++ -+....+..+++||.
T Consensus 28 ~ai~~l~~a~~a~~~~~~~~~~~~l~ka~~Ii~~L~~~Ld~e~g~eia~~L~~lY~y--------~~~~L~~A~~~~d~~ 99 (122)
T PF02561_consen 28 GAIEFLKQAKEAIEQGDIEEKNEALQKAQDIITELQSSLDFEKGGEIADNLFRLYDY--------MIRQLVQANLKKDPE 99 (122)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHH--------HHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHH--------HHHHHHHHHHhCCHH
Confidence 345566666666666667777888999999999999999987 4555555544332 245677889999999
Q ss_pred hHHHHHHHHHHHHhh
Q psy7356 564 LLIKLRALFLKLSTS 578 (1083)
Q Consensus 564 ~v~kLRa~FLKLaS~ 578 (1083)
....++.++..|..+
T Consensus 100 ~l~~v~~~l~~l~~a 114 (122)
T PF02561_consen 100 RLDEVIRILEELRDA 114 (122)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988888765
No 16
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=20.51 E-value=3.6e+02 Score=25.65 Aligned_cols=34 Identities=18% Similarity=0.185 Sum_probs=15.7
Q ss_pred HHHHHHhHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q psy7356 76 DEKIRDTYLEILVRFYVVFE--NIYKFAINLNQYVE 109 (1083)
Q Consensus 76 Deefr~~~~~il~RFy~lFe--sI~~Y~~dl~~yle 109 (1083)
|.++.......+.++-..++ .+++.+..+..|++
T Consensus 38 d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 73 (129)
T cd07957 38 DEELLEEAEELLEEVAEAMEELEFRKALEEIMELAR 73 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34444444444444444444 33444444444444
No 17
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=20.51 E-value=3e+02 Score=26.30 Aligned_cols=42 Identities=33% Similarity=0.506 Sum_probs=26.4
Q ss_pred hHhHHHHHHHHHHHHHHhccccccCCCCCchhhHHHHHHHHHHHHHHHH-------HHHHHHHhhhc
Q psy7356 692 LHNGIKKQLAETILTELNKGLTFNTKSKTNKTDLMTKLGQLAVVMDGHK-------RSFEYIQDYVG 751 (1083)
Q Consensus 692 LEDGIRKELV~~ia~alh~~LiF~~k~~~~~~el~~~L~~L~~~~~g~r-------rSFEYIQDYvn 751 (1083)
++-..|.+|.++|.. |+..|..|.++++.-+ .-=+|.|+||+
T Consensus 13 ~~~e~k~~Li~ei~~------------------LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~ 61 (80)
T PF10224_consen 13 LEKEEKEELIQEILE------------------LQDSLEALSDRVEEVKEENEKLESENEYLQQYIG 61 (80)
T ss_pred HhHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677776654 6666666666666544 44568888864
No 18
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=20.43 E-value=2.5e+02 Score=26.20 Aligned_cols=55 Identities=16% Similarity=0.259 Sum_probs=33.9
Q ss_pred HHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhhcCccchHHHHHHHHHHHHHH
Q psy7356 73 QELDEKIRDTYLEILVRFYVVFENIYKFAINLNQYVENLENNVYIQESIESVFLDEEGCQLMCEALYLYGVML 145 (1083)
Q Consensus 73 ~~LDeefr~~~~~il~RFy~lFesI~~Y~~dl~~yleel~~g~yiq~t~e~vl~d~~GkQLlcEalyLyGvmL 145 (1083)
.++-+++.+.+... +|..+...+++++.++|.|.++-.. ....++|++...+.||
T Consensus 48 ~~~~~~~~~~~~~~--~~~~a~~~i~~~~~~~n~~~~~~~p----------------~~~~~~~~l~~~~~lL 102 (117)
T cd07958 48 HKTIKKVTEDIERL--RFNTAIAALMELVNALYKYKKKDAQ----------------HAAVLREALETLVLLL 102 (117)
T ss_pred HHHHHHHHHHHhCC--cchHHHHHHHHHHHHHHHhhccccc----------------hHHHHHHHHHHHHHHH
Confidence 34444455544432 7777788888888888888654211 2456777776666655
Done!