Query psy7356
Match_columns 1083
No_of_seqs 89 out of 91
Neff 4.5
Searched_HMMs 29240
Date Sat Aug 17 00:41:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7356.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7356hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p8c_B NCK-associated protein 97.5 0.49 1.7E-05 60.1 44.9 887 12-1022 17-1014(1128)
2 3lys_A Prophage PI2 protein 01 61.2 25 0.00086 31.4 7.8 56 410-467 8-65 (112)
3 2khv_A Phage integrase; soluti 53.8 42 0.0014 29.6 7.9 56 410-467 3-61 (106)
4 2kj8_A Putative prophage CPS-5 46.0 64 0.0022 28.9 7.9 56 410-467 7-64 (118)
5 2kd1_A DNA integration/recombi 42.9 94 0.0032 27.4 8.5 27 439-467 39-65 (118)
6 2itb_A TRNA-(MS(2)IO(6)A)-hydr 42.4 1.5E+02 0.0051 31.3 10.8 103 287-422 36-153 (206)
7 2kiw_A INT protein; alpha, str 37.7 98 0.0034 27.0 7.6 53 411-466 3-57 (111)
8 2q13_A DCC-interacting protein 37.2 3.1E+02 0.011 30.3 13.3 112 456-587 31-148 (385)
9 2oxo_A Integrase; DNA-binding 36.0 1.5E+02 0.005 24.7 8.2 30 436-467 31-60 (103)
10 2q12_A DIP13 alpha, DCC-intera 29.2 5.1E+02 0.018 27.0 12.8 56 694-749 190-246 (265)
11 2khq_A Integrase; all-alpha, s 23.3 2.8E+02 0.0095 23.8 8.0 30 435-466 31-60 (110)
12 3okq_A BUD site selection prot 22.9 1.2E+02 0.004 30.4 5.8 70 686-778 30-102 (141)
13 2oo2_A Hypothetical protein AF 20.6 99 0.0034 28.4 4.4 59 456-549 9-67 (86)
No 1
>3p8c_B NCK-associated protein 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=97.50 E-value=0.49 Score=60.09 Aligned_cols=887 Identities=15% Similarity=0.213 Sum_probs=433.8
Q ss_pred HHHHhhhhhHHHHHHHhhhc------cCCCCcccccccccccceeecccCCCCchHHHhhhhcCcchHHhHHHHHHhHHH
Q psy7356 12 ILELVSRGNAIIAELLRLKD------HIPSIFQQTDVNKQYSDLIIDFSYFSQNETVDNKIEGSQQLQELDEKIRDTYLE 85 (1083)
Q Consensus 12 lL~lVsrGnAIiAEllRLsd------~iP~~f~~~~~~~ky~~Ii~DFsYfk~~e~~E~kIe~~~~L~~LDeefr~~~~~ 85 (1083)
|.-|-.||.-+++=|.+++. --|..|.+..-.+-.+.|+=. |.+.+.-.+ +.+ ++.+ -+.++.+.+
T Consensus 17 l~iLn~r~~g~LtrlYnikk~~~~~k~kp~fl~dk~~e~~iK~i~kK---FP~id~~~~-~~~---~~~~-~~~~~ei~~ 88 (1128)
T 3p8c_B 17 LTILNDRGVGMLTRLYNIKKACGDPKAKPSYLIDKNLESAVKFIVRK---FPAVETRNN-NQQ---LAQL-QKEKSEILK 88 (1128)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTTSCGGGTCTTTHHHHHHHHHH---TTCCC-----CCT---THHH-HHTHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHhhcCCCCCCCcCChhhhHHHHHHHHhc---CCCCCcccc-ccc---chHH-HHHHHHHHH
Confidence 45677899999999998874 345544331100111222212 222221111 121 2222 245666788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccc-chhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHhhcCCcchhhhhhhhh
Q psy7356 86 ILVRFYVVFENIYKFAINLNQYVENLENN-VYIQESIESVFLDEEGCQLMCEALYLYGVMLLVTELYVPGAIREKLLVSY 164 (1083)
Q Consensus 86 il~RFy~lFesI~~Y~~dl~~yleel~~g-~yiq~t~e~vl~d~~GkQLlcEalyLyGvmLL~lD~~i~G~vRERllVay 164 (1083)
.++-+|..|--+..|-.-..+-+-++... ..+. +=.|.+=-...++-+--|.-+.+++.+--+ .|++++-
T Consensus 89 ~L~~yY~tf~Dl~dfrd~~~elL~~i~s~~~~ld-----i~~N~~lT~~yLdL~v~yvkv~lllsri~d----rK~ll~l 159 (1128)
T 3p8c_B 89 NLALYYFTFVDVMEFKDHVCELLNTIDVCQVFFD-----ITVNFDLTKNYLDLIITYTTLMILLSRIEE----RKAIIGL 159 (1128)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC-----TTTSHHHHHHHHHHHHHHHHHHHHHHTCTT----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcceeeec-----cccCHHHHHHHHHHHHHHHHHHHHHHhhch----HHHHHHH
Confidence 88888888877777766555555555421 1111 112334455667778888888888877433 3556655
Q ss_pred eec-----CCCCCCCHHHHHHHhhcCCCCCCC-hhhhhcCCCCCHHHHHHHHH--------------Hhccccccccccc
Q psy7356 165 YRY-----SLNKSQNFDEVCQLFSSSKKGNGY-PENVFSRIPINENLVNMILG--------------KLRTDDIYHSIVA 224 (1083)
Q Consensus 165 yR~-----~~~~~sn~d~vc~Llr~~~~p~~Y-Pe~yF~Rvp~~~~~V~~vig--------------rLrsDDiy~q~~~ 224 (1083)
|.+ +|.+++++..+.+++-.-..|-.. .|++- |+.+ .|..++. .+|++...+-++.
T Consensus 160 yn~a~~~~~~~~epsy~RL~q~i~~yd~PlkkL~eef~---p~~~-~I~~aL~Sl~~~~~~r~~~a~~wR~~~~LSl~~~ 235 (1128)
T 3p8c_B 160 YNYAHEMTHGASDREYPRLGQMIVDYENPLKKMMEEFV---PHSK-SLSDALISLQMVYPRRNLSADQWRNAQLLSLISA 235 (1128)
T ss_dssp HHHHHHTTSSSCCTTHHHHHHHHHHTSSHHHHHHHHTT---TTHH-HHHHHHHGGGGTHHHHSCCHHHHHHTTTTCSSSS
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHhhhHHHHHHHHHH---HHHH-HHHHHHHHhHHHHHHccCcHHHHhhcCcCCCcCC
Confidence 553 355557788888887642111111 02211 3333 2222222 3555554444432
Q ss_pred ---CCCCCcch-hh--hhccccc---eeeeeeeccccccccchhhhhhhhhhcCCccEEeeccceeeeccccccccHHHH
Q psy7356 225 ---YPLPQHRS-TA--LANQASM---LFVCLYFDTSVLHNNTANMREVVDKFFPDNWIVSIYMGITVQLIDAWEPYRAAK 295 (1083)
Q Consensus 225 ---yP~p~HRs-~a--la~Qasm---LyV~L~F~P~~L~~~~a~MREIVDk~F~DnWVi~~ymG~~vnL~~~W~~ykAA~ 295 (1083)
-++|.|=- .| +..=..| .....-.+|+.|.++ +..-+|+.---.+||||++|=-.++++-+.-+.+-.-.
T Consensus 236 P~~~~~pa~~d~~~~ells~e~m~~WIifg~L~cp~~L~~~-~~~~~l~~~aL~~~~vl~LfRdevi~iH~~~q~~~~s~ 314 (1128)
T 3p8c_B 236 PSTMLNPAQSDTMPCEYLSLDAMEKWIIFGFILCHGILNTD-ATALNLWKLALQSSSCLSLFRDEVFHIHKAAEDLFVNI 314 (1128)
T ss_dssp GGGTTSCCCCTTHHHHHSCHHHHHHHHHHHHHHTTHHHHHC-HHHHHHHHHHHTTCSEEEEETTEEEEHHHHHHHHHTTC
T ss_pred hhhhCCcccccchhHHHHhHHHHHHHHeeeeeecchhhccC-hhHHHHHHHHhccCCEEEEecceeeeHHHHHHHHHHHH
Confidence 23333310 00 1111111 111222358888653 34458888899999999999999999988766221100
Q ss_pred HHhhhccchhhHHHHH--------HHHHHHHH---HHHHHHHHHhhhcccchhhhccCcHHHHHHHhhhhhhhhhhhhcc
Q psy7356 296 LALSNSLETSNVKQYS--------TFHTDRII---KLTSQTNQLLKDGALTEENVLDNTNKILNLARECNVTIRWLVLHT 364 (1083)
Q Consensus 296 ~AL~ntl~~~~vk~~~--------~~~~~~~~---~~~~~~~~~l~EG~L~ee~vLdni~~l~~~iR~~Nv~lRWl~LHt 364 (1083)
. +..-..+.||+.. ..|++.-. ..+.++-.+++. .-..+--+++-++..+.=+.-=+-|++=|+
T Consensus 315 K--~y~K~v~~ikE~~~~A~~~a~~~HreRR~~LR~~Lkel~~i~~D---qPgLLgPK~~~v~~aLs~ArdEV~W~~rH~ 389 (1128)
T 3p8c_B 315 R--GYNKRINDIRECKEAAVSHAGSMHRERRKFLRSALKELATVLSD---QPGLLGPKALFVFMALSFARDEIIWLLRHA 389 (1128)
T ss_dssp G--GGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CGGGGTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H--hhhhhHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHHhc---CCcccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence 0 0011112233322 12222222 222222222221 111223455556666667777889999997
Q ss_pred CCCccccccccchhhhHHHHHHHhhCCChhHHHHHHHhhhHh-------HHHHHHHHHHHHHhHHHhHHHhHHHHHHHHH
Q psy7356 365 SSNHETISGVAASKKSKQIKDIVSNNINMSDVFQLILNTSEF-------ELKIKELLKALLEDKQNKWNSCKQECNERLN 437 (1083)
Q Consensus 365 ~~~~~~~~~~~~~k~~r~l~~~v~~~~~~~~l~~LLL~taql-------E~~lk~~~~~lL~~K~~~W~~~K~e~~erm~ 437 (1083)
... | ||. ..++.+..+-.||--..++ ...++.-|-+-|.+=+.- -++
T Consensus 390 ~~~-------p--kk~-------~~d~~D~~i~eLLf~m~eLr~Lv~k~~~vIqrYy~qyLs~~Da~----------~L~ 443 (1128)
T 3p8c_B 390 DNM-------P--KKS-------ADDFIDKHIAELIFYMEELRAHVRKYGPVMQRYYVQYLSGFDAV----------VLN 443 (1128)
T ss_dssp HHS-------C--CSS-------TTTTCCTTHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHTHHH----------HHH
T ss_pred ccC-------C--CCC-------cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHH----------HHH
Confidence 433 1 220 1123444444444332222 122222222222221111 111
Q ss_pred HHHHHccCCCCCCccccchhHHHHHHHHHHhhhhcccCC---c---c-hhhHHHHHHHHHHHHHHhh-hCcccchHHHHH
Q psy7356 438 YLIELFSGAKPLPKVHKNQQLEKWFSEINSHLESLNFSD---E---M-GSVQKIVQFIQALDSVKEF-HGLSSNAQVEQW 509 (1083)
Q Consensus 438 eLae~FsG~~pL~r~~kne~L~~WF~~is~~I~~Ld~~d---~---~-~agRkI~qLiqALeeVqef-hql~~nlqVkQ~ 509 (1083)
+.-..-+| + .+....=+..+.+++++|+.+. + . .+=|.=-==+||.-.|..- .++..+=.+-.+
T Consensus 444 ~~iq~l~~---~-----p~ees~i~ss~~~tl~~L~~~q~e~~~~~Df~~lRlDW~Rlqa~~S~~~~~l~l~~~~~l~~~ 515 (1128)
T 3p8c_B 444 ELVQNLSV---C-----PEDESIIMSSFVNTMTSLSVKQVEDGEVFDFRGMRLDWFRLQAYTSVSKASLGLADHRELGKM 515 (1128)
T ss_dssp HHHTTCSC---C-----CHHHHHHHHHHHHHHHTCCHHHHHTTCCCCCHHHHHHHHHHHHHHHSTTCSSCGGGCHHHHHH
T ss_pred HHHHHhcc---C-----CHHHHHHHHHHHHHHHcCChhhhccCCCCCcHHHHHHHHHHHHHHHccccCcCcchhHHHHHH
Confidence 11111110 1 1111122444444444444311 0 0 1112111112333333211 111111111111
Q ss_pred HHHHHHHHHHHHHHccccchhhhhhhhhcccchhhhhhhhhHHHHHHHhhhCCchHHHHHHHHHHHHhhccc------c-
Q psy7356 510 IDESIKYLNIMVRSVNVKDKVMIHLQIIADLSYAWKLIDQFTPLMQDAIKNEPSLLIKLRALFLKLSTSLEI------P- 582 (1083)
Q Consensus 510 L~etr~~L~~M~r~inike~vl~~i~~i~D~SYAW~lid~yt~~mQ~~Ik~~P~~v~kLRa~FLKLaS~L~l------P- 582 (1083)
+..+ -+-.+|+ |++-..+.=.||+|=.|-.-..|+.....-+. .|+- ..--..|.+++|..=- |
T Consensus 516 mN~~-~fhsk~V------D~lde~L~e~sdLs~l~FY~~~~~~~F~~cl~-~p~q-~ry~~af~~ics~F~~~~h~~cPE 586 (1128)
T 3p8c_B 516 MNTI-IFHTKMV------DSLVEMLVETSDLSIFCFYSRAFEKMFQQCLE-LPSQ-SRYSIAFPLLCTHFMSCTHELCPE 586 (1128)
T ss_dssp HHHH-HHHHHHH------HCHHHHHHHHHCCGGGGGCHHHHHHHHHHHHH-SHHH-HTTTTHHHHHGGGGGGGCCTTCGG
T ss_pred HHHH-HHHHHHH------hhHHHHHHHhcchhheeehhHHHHHHHHHHhc-Cccc-chHHHHHHHHHhchhccCCccChh
Confidence 1111 0111111 12222334456777666655555555555543 3442 2233467777765411 2
Q ss_pred -ccccccccCcchhHHHHHhHHHHHHHHHHHHh------------hcchHHHHHHHHHHHhhccccccCCCc--cchhHH
Q psy7356 583 -LLRINQAESEDLISVSQYYSNELVTYMQHVLQ------------IIPQTMFTLMADITNLQTNVMLEVPTR--LDKDKL 647 (1083)
Q Consensus 583 -LlRI~Qa~S~Dl~sVS~yYS~eLv~~vR~VLq------------IIP~smF~iL~~Ii~lqT~~ike~Ptr--leK~~L 647 (1083)
-..|. ++-.+..+-+=+|+.+.++.++. .-|+.--..+.+...- ..-|.-|+| .++++=
T Consensus 587 E~~~i~----~~sl~~~~~fLe~ia~~~~~~i~~i~~~~~~l~~qLlP~~aA~~i~~~~~~--k~kk~~~~k~~~~~~~P 660 (1128)
T 3p8c_B 587 ERHHIG----DRSLSLCNMFLDEMAKQARNLITDICTEQCTLSDQLLPKHCAKTISQAVNK--KSKKQTGKKGEPEREKP 660 (1128)
T ss_dssp GHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSGGGGHHHHHHHTTC----------------CCT
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhcCHHHHHHHHHHHHHH--hcccccCccCCCCCCCC
Confidence 11122 34667777777889999999883 3333333333321111 101111211 001000
Q ss_pred hhhhchhhHHH---HHHHHHHHHHHhHHHhhhhcccceeEEeChhhhhHhHHHHHHHHHHHHHHhccccccCCCCC--ch
Q psy7356 648 KDYAQLDTRFE---IAHLTHSISVFTQGILRMKSTLVGIVCIDPKQLLHNGIKKQLAETILTELNKGLTFNTKSKT--NK 722 (1083)
Q Consensus 648 k~yAQl~eR~~---lA~lT~~ISvfTeGIL~M~~TlvGvIevDPkqLLEDGIRKELV~~ia~alh~~LiF~~k~~~--~~ 722 (1083)
=.=++...|.. +=++--.+.-+-.-|--|++--|==-..-|++-|-+.+ -.++++.++....||+.... -+
T Consensus 661 G~ES~r~~r~~~t~~dkl~~~LteLc~aln~~~~i~V~dh~f~PrEyL~~~L----e~~f~~~l~~~~~~~~~~~~i~RP 736 (1128)
T 3p8c_B 661 GVESMRKNRLVVTNLDKLHTALSELCFSINYVPNMVVWEHTFTPREYLTSHL----EIRFTKSIVGMTMYNQATQEIAKP 736 (1128)
T ss_dssp TGGGCCSCTTSCCHHHHHHHHHHHHHHHHTSCSCEEETTEEECHHHHHHHHH----HHHHHHHHHHHTTCBTTTTBCCCH
T ss_pred CccccccChHHHhhHHHHHHHHHHHHHHhccCCCeeEEeeeeccHHHHHHHH----HHHHHHHHHHHhccCCCccccCCh
Confidence 00011111111 11111111122222333555444444567999985554 44445555545567653110 12
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHhhhhHHhhhccCCCCC----CchHHHHHHHHhhcC
Q psy7356 723 TDLMTKLGQLAVVMDGHKRSFEYIQDYVGIYGLKVWYEVLNQVIEETVSSEIDSLSSTSGC----TFVGRLADELVSMTD 798 (1083)
Q Consensus 723 ~el~~~L~~L~~~~~g~rrSFEYIQDYvnI~GLkIW~eE~sRIInynVE~Ecn~FlS~~s~----nFiGRLa~eil~iTD 798 (1083)
+++. ..+..|.....=+.-||+|+ ++|+|+--.=|||..+=|.+.. ++..--..-|+|--.
T Consensus 737 Sell-------~~l~a~m~vlq~~e~~v~iD--------vt~~i~~vLLqqtq~~D~~G~~tit~~yt~WYle~llr~~s 801 (1128)
T 3p8c_B 737 SELL-------TSVRAYMTVLQSIENYVQID--------ITRVFNNVLLQQTQHLDSHGEPTITSLYTNWYLETLLRQVS 801 (1128)
T ss_dssp HHHH-------HHHHHHHHHHHHGGGTSSCC--------HHHHHHHHHHHTTSSBCTTSCBCHHHHHHHHHHHTHHHHHH
T ss_pred HHHH-------HHHHHHHHHHHHHHHHhcch--------HHHHHHHHHHHhCCccccCCCccHHHHHHHHHHHHHHHhcc
Confidence 4555 45556777777788899999 4566666666888776553322 344444455776666
Q ss_pred CCcceeecCcccccccCC-C------ccccchHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHhhcCCCchHH
Q psy7356 799 PKQSMYVENTTAWYNVKT-Q------KEIFNMKIFSLIIKAIGISGLVGLDNVLGFRIVKNIQSVFSQLFNYSNDKPCQD 871 (1083)
Q Consensus 799 Pk~T~Yi~~~~~WyD~kt-~------~Ev~~~~~fs~l~~alg~~GL~gLDrL~~f~iv~eLq~~~~~~~~~~~~~~~~~ 871 (1083)
....+|.+...+.....+ | +|..+..-...+.+-+||+|+--||+-+-.+|+..++.+-+.+. ... +
T Consensus 802 ~~~iv~sp~~~~Fvs~~~~g~~~f~AE~~tD~~ELrAL~eLiGPYG~k~l~~~L~~hi~~~v~elk~~v~----~N~--~ 875 (1128)
T 3p8c_B 802 NGHIAYFPAMKAFVNLPTENELTFNAEEYSDISEMRSLSELLGPYGMKFLSESLMWHISSQVAELKKLVV----ENV--D 875 (1128)
T ss_dssp TTSEEEETTTTEEEECSSSCCCCSCTHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TTH--H
T ss_pred CCceEEccHHHHhhcCCCCCCCCcCHHhcCCHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHH----HhH--H
Confidence 679999999999977542 2 34556677778889999999999999988888776665544433 334 7
Q ss_pred HHHHHhhhcCCCCCCCCCCcCcHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhhhcccCchHHHHHHHHhHHH
Q psy7356 872 ILAQMSKELSPNTNPISNPTKLYPQYLSKMNKYLMGVNDSLIQIGQLQILRQLLRHELSSCAQFESKNLHLCLETLDKSL 951 (1083)
Q Consensus 872 ~l~~l~~~l~p~~~~~~~~~k~Y~~~~~~~~~~~~~~~~~i~~IGQ~QLLR~~Ia~eL~~s~K~~s~~L~~aL~tlN~al 951 (1083)
+|..+......+ ..-+++.+++ ...-.++.....||++==.|+++...|+.--+-+...|.++++.+
T Consensus 876 ~L~~lr~~~~~~--------~~m~~~lk~l-~~~d~~l~r~~~iG~iL~FR~ll~eAl~~Vl~~~~Pfl~s~i~~~---- 942 (1128)
T 3p8c_B 876 VLTQMRTSFDKP--------DQMAALFKRL-SSVDSVLKRMTIIGVILSFRSLAQEALRDVLSYHIPFLVSSIEDF---- 942 (1128)
T ss_dssp HHHHHHHCTTCH--------HHHHHHHTTC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH----
T ss_pred HHHHHHHhcCCH--------HHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHH----
Confidence 788777755321 1224444443 336689999999999999999999999888877888887665554
Q ss_pred HHHHHhhhcCCCCCCCCCchHHHHHHHHHHHHhcccCccc---cceeccC-----CCC---ChhHHHHHHHHHhcccccc
Q psy7356 952 LNDLRLYYSKEGMSLPTDNQELMTSICAYLKWIGQDNPYH---KIYVTSR-----NIP---YFPLFLFLYSLSVLSKVTY 1020 (1083)
Q Consensus 952 l~di~~h~~dp~~p~p~~~~~ll~eL~~~L~~~Gi~dPl~---kIYitt~-----~~~---~l~l~lflf~ls~l~k~~y 1020 (1083)
..|+.. +.|. ....-+.+| =.++|+.-+.. +--+... .++ .++.++..|+-..+|+...
T Consensus 943 ----~~~~~~-~~~~--k~~l~v~~l---A~~aG~~~~vD~~L~~al~~~~~~~~~~d~~~~~~~lLlv~~Avsl~~~~~ 1012 (1128)
T 3p8c_B 943 ----KDHIPR-ETDM--KVAMNVYEL---SSAAGLPCEIDPALVVALSSQKSENISPEEEYKIACLLMVFVAVSLPTLAS 1012 (1128)
T ss_dssp ----HHC------CC--SSHHHHHHH---HHHTTCCCSSCHHHHHHHTC------CHHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred ----HHhCCC-cCcc--hhhhhHHHH---HHhcCCCCCCCHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHHhhhhhc
Confidence 445432 2221 111112344 46778774432 2222211 122 2577777888888888766
Q ss_pred cc
Q psy7356 1021 SS 1022 (1083)
Q Consensus 1021 ~~ 1022 (1083)
++
T Consensus 1013 ~~ 1014 (1128)
T 3p8c_B 1013 NV 1014 (1128)
T ss_dssp CG
T ss_pred CC
Confidence 54
No 2
>3lys_A Prophage PI2 protein 01, integrase; helical N-terminal domain, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactococcus lactis}
Probab=61.17 E-value=25 Score=31.41 Aligned_cols=56 Identities=14% Similarity=0.255 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhH-HHhHHHhH-HHHHHHHHHHHHHccCCCCCCccccchhHHHHHHHHHH
Q psy7356 410 IKELLKALLEDK-QNKWNSCK-QECNERLNYLIELFSGAKPLPKVHKNQQLEKWFSEINS 467 (1083)
Q Consensus 410 lk~~~~~lL~~K-~~~W~~~K-~e~~erm~eLae~FsG~~pL~r~~kne~L~~WF~~is~ 467 (1083)
+.+++..-++.+ ...|...- +.-...++.+..+| |..|+..+.. ..+++|+..+.+
T Consensus 8 f~~~~~~wl~~~~~~~~~~~T~~~y~~~~~~i~p~~-g~~~l~~It~-~~i~~~~~~l~~ 65 (112)
T 3lys_A 8 ISEYFKDWMELYKKNAIDEMTYKGYEQTLKYLKTYM-PNVLISEITA-SSYQRALNKFAE 65 (112)
T ss_dssp HHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHS-SSCBTTTCCH-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHh-CCCCHHhCCH-HHHHHHHHHHHH
Confidence 455555555542 22332221 11122445677777 7799999955 889999999865
No 3
>2khv_A Phage integrase; solution structure, GFT, NESG, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=53.80 E-value=42 Score=29.61 Aligned_cols=56 Identities=13% Similarity=0.259 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhHHHhHHHh-HHHHH-HHHH-HHHHHccCCCCCCccccchhHHHHHHHHHH
Q psy7356 410 IKELLKALLEDKQNKWNSC-KQECN-ERLN-YLIELFSGAKPLPKVHKNQQLEKWFSEINS 467 (1083)
Q Consensus 410 lk~~~~~lL~~K~~~W~~~-K~e~~-erm~-eLae~FsG~~pL~r~~kne~L~~WF~~is~ 467 (1083)
+.+++..-++.+...|... ..+.. .++. .+-.+| |..|++.+.. ..+++|+..+.+
T Consensus 3 f~~~~~~wl~~~~~~~~~~~t~~~~~~~~~~~i~p~~-G~~~l~~It~-~~i~~~~~~l~~ 61 (106)
T 2khv_A 3 FSECAALYIKAHRSSWKNTKHADQWTNTIKTYCGPVI-GPLSVQDVDT-KLIMKVLDPIWE 61 (106)
T ss_dssp HHHHHHHHHHTTGGGGTTSTHHHHHHHHHHHHTHHHH-TTSBSSSCCH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCcchHHHHHHHHHHhccccc-CCccHHHcCH-HHHHHHHHHHHH
Confidence 4556666666665556441 22222 3333 355556 7899999955 889999988764
No 4
>2kj8_A Putative prophage CPS-53 integrase; INTS, INTC, YFDB, DNA integration, DNA recombination, structural genomics, protein structure initiative; NMR {Escherichia coli k-12}
Probab=46.04 E-value=64 Score=28.89 Aligned_cols=56 Identities=13% Similarity=0.259 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhHHHhHHHhHHHHH-HHHH-HHHHHccCCCCCCccccchhHHHHHHHHHH
Q psy7356 410 IKELLKALLEDKQNKWNSCKQECN-ERLN-YLIELFSGAKPLPKVHKNQQLEKWFSEINS 467 (1083)
Q Consensus 410 lk~~~~~lL~~K~~~W~~~K~e~~-erm~-eLae~FsG~~pL~r~~kne~L~~WF~~is~ 467 (1083)
+.+++..-++.+...|.....+.. ..+. -+..+| |..|+..+.. ..+++|+..+.+
T Consensus 7 ~~~~~~~wl~~~~~~~~~~T~~~y~~~l~~~i~~~l-g~~~l~~It~-~~i~~~~~~l~~ 64 (118)
T 2kj8_A 7 FSAIYKEWYEHKKQVWSVGYATELAKMFDDDILPII-GGLEIQDIEP-MQLLEVIRRFED 64 (118)
T ss_dssp HHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHH-TTSBTTSCCH-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHHHHHhhHHh-cCCcHHHCCH-HHHHHHHHHHHH
Confidence 344555555544434433222222 2232 244555 6789999855 889999998864
No 5
>2kd1_A DNA integration/recombination/invertion protein; protein structure initiative, structural genomics, unknown function, PSI-2; HET: DNA; NMR {Bacillus cereus atcc 14579}
Probab=42.93 E-value=94 Score=27.40 Aligned_cols=27 Identities=15% Similarity=0.405 Sum_probs=20.6
Q ss_pred HHHHccCCCCCCccccchhHHHHHHHHHH
Q psy7356 439 LIELFSGAKPLPKVHKNQQLEKWFSEINS 467 (1083)
Q Consensus 439 Lae~FsG~~pL~r~~kne~L~~WF~~is~ 467 (1083)
+..+| |..|++.+.. ..+++|+..+.+
T Consensus 39 i~~~~-g~~~l~~it~-~~i~~~~~~l~~ 65 (118)
T 2kd1_A 39 IIPSL-GNIKLAKLTS-LHMQNYVNSLRD 65 (118)
T ss_dssp HHHHT-TSSBGGGCCH-HHHHHHHHHHHH
T ss_pred hhHhh-CcCCHHhCCH-HHHHHHHHHHHH
Confidence 45555 6789998855 789999998864
No 6
>2itb_A TRNA-(MS(2)IO(6)A)-hydroxylase, putative; putative ATTH, structural genomics, joint center for structu genomics, JCSG; 2.05A {Pseudomonas putida} SCOP: a.25.1.7
Probab=42.45 E-value=1.5e+02 Score=31.28 Aligned_cols=103 Identities=15% Similarity=0.169 Sum_probs=62.3
Q ss_pred cccccHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhccCcHHHHHHHhhhhhhhhhhhhccCC
Q psy7356 287 AWEPYRAAKLALSNSLETSNVKQYSTFHTDRIIKLTSQTNQLLKDGALTEENVLDNTNKILNLARECNVTIRWLVLHTSS 366 (1083)
Q Consensus 287 ~W~~ykAA~~AL~ntl~~~~vk~~~~~~~~~~~~~~~~~~~~l~EG~L~ee~vLdni~~l~~~iR~~Nv~lRWl~LHt~~ 366 (1083)
+|.--|||.+||+=...-..-.++..+.......= |.|...++..|.+-+++++-+
T Consensus 36 A~CE~KAA~tAm~Li~rYp~~~~Lv~~m~~LarEE------------------L~HFeqVl~im~~Rgi~l~~~------ 91 (206)
T 2itb_A 36 KNCEFKAASTALSLIAKYNTHLDLINMMSRLAREE------------------LVHHEQVLRLMKRRGVPLRPV------ 91 (206)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHTTCCCCCC------
T ss_pred HHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHcCCCCCCC------
Confidence 78889999999986443333333333322222222 355555556787777776432
Q ss_pred CccccccccchhhhHHHHHHHhhCCChhHHHHHHHhhhHhH---------------HHHHHHHHHHHHhHH
Q psy7356 367 NHETISGVAASKKSKQIKDIVSNNINMSDVFQLILNTSEFE---------------LKIKELLKALLEDKQ 422 (1083)
Q Consensus 367 ~~~~~~~~~~~k~~r~l~~~v~~~~~~~~l~~LLL~taqlE---------------~~lk~~~~~lL~~K~ 422 (1083)
....-.++++..|.+ ..|..+++-||=.|=.| -.|++.|..|+.+-.
T Consensus 92 --------~~~~Ya~~L~k~vr~-~ep~~l~D~Llv~AlIEARSCERF~lLa~~l~d~L~~FY~~Ll~SEA 153 (206)
T 2itb_A 92 --------SAGRYASGLRRLVRA-HEPVKLVDTLVVGAFIEARSCERFAALVPHLDEELGRFYHGLLKSEA 153 (206)
T ss_dssp --------CCCSHHHHHHTTSCS-STTHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHH
T ss_pred --------CCCHHHHHHHHHccC-CChHHHHHHHHHHHHHHHHhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 112445667666653 46778888777666544 348888888887643
No 7
>2kiw_A INT protein; alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus haemolyticus JCSC1435}
Probab=37.74 E-value=98 Score=26.95 Aligned_cols=53 Identities=15% Similarity=0.362 Sum_probs=29.8
Q ss_pred HHHHHHHHHhHHHhHHHhHHHH-HHHHH-HHHHHccCCCCCCccccchhHHHHHHHHH
Q psy7356 411 KELLKALLEDKQNKWNSCKQEC-NERLN-YLIELFSGAKPLPKVHKNQQLEKWFSEIN 466 (1083)
Q Consensus 411 k~~~~~lL~~K~~~W~~~K~e~-~erm~-eLae~FsG~~pL~r~~kne~L~~WF~~is 466 (1083)
.+++..-++.+...|.....+. ...+. .+. +| |..|+..+.. ..+++|+..+.
T Consensus 3 ~~~~~~~l~~~~~~~~~~T~~~y~~~~~~~i~-~~-g~~~l~~It~-~~i~~~~~~l~ 57 (111)
T 2kiw_A 3 KQVADDWLKQYANDVKVSSVRAREKAIQHAIE-RF-NTKPIQTIKK-HDYQRFVDDIS 57 (111)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH-HT-TSSCGGGCCH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCcchHHHHHHHHHHHHH-HH-CcCcHHHcCH-HHHHHHHHHHH
Confidence 3444555554433333222222 22333 345 44 7889999855 78999999886
No 8
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=37.20 E-value=3.1e+02 Score=30.34 Aligned_cols=112 Identities=8% Similarity=0.143 Sum_probs=61.4
Q ss_pred hhHHHHHHHHHHhhhhcccCCcchhhHH----HHHHHHHHHHHHh--hhCcccchHHHHHHHHHHHHHHHHHHHccccch
Q psy7356 456 QQLEKWFSEINSHLESLNFSDEMGSVQK----IVQFIQALDSVKE--FHGLSSNAQVEQWIDESIKYLNIMVRSVNVKDK 529 (1083)
Q Consensus 456 e~L~~WF~~is~~I~~Ld~~d~~~agRk----I~qLiqALeeVqe--fhql~~nlqVkQ~L~etr~~L~~M~r~inike~ 529 (1083)
+.+.+|...+.+...++ ..+|+. ..++.++|.+... +..-..+=.|...|...-..+++|.. ..+.
T Consensus 31 ~~l~~~l~kl~k~~~~~-----~~a~~~~~~a~~~f~~~L~~~~~~~~~~~~~d~~v~~~l~~f~~~~~ei~~---~~~~ 102 (385)
T 2q13_A 31 TAISNYMNQLYQAMHRI-----YDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSS---CHAV 102 (385)
T ss_dssp HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHTTTTSCCCC---CCHHHHHHHHHHHHHHHHHH---HHHH
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 45777888888887764 233333 4667777776543 21111122233445444444444421 1122
Q ss_pred hhhhhhhhcccchhhhhhhhhHHHHHHHhhhCCchHHHHHHHHHHHHhhccccccccc
Q psy7356 530 VMIHLQIIADLSYAWKLIDQFTPLMQDAIKNEPSLLIKLRALFLKLSTSLEIPLLRIN 587 (1083)
Q Consensus 530 vl~~i~~i~D~SYAW~lid~yt~~mQ~~Ik~~P~~v~kLRa~FLKLaS~L~lPLlRI~ 587 (1083)
.+.+++ ..+..-++.-++.|=..+...|.-|-|.+.-.|.-+.|..
T Consensus 103 l~~~~~------------~~~~~PL~~f~~~di~~~ke~kk~fek~~~~yd~al~k~~ 148 (385)
T 2q13_A 103 LSTQLA------------DAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYS 148 (385)
T ss_dssp HHHHHH------------HHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222221 2244446666666666677889999999988888887743
No 9
>2oxo_A Integrase; DNA-binding protein, four-helix bundle, DNA binding protein; 2.00A {Unidentified phage}
Probab=35.95 E-value=1.5e+02 Score=24.69 Aligned_cols=30 Identities=7% Similarity=0.176 Sum_probs=22.3
Q ss_pred HHHHHHHccCCCCCCccccchhHHHHHHHHHH
Q psy7356 436 LNYLIELFSGAKPLPKVHKNQQLEKWFSEINS 467 (1083)
Q Consensus 436 m~eLae~FsG~~pL~r~~kne~L~~WF~~is~ 467 (1083)
+..+..+| |..|+..+.. ..+++|+..+.+
T Consensus 31 ~~~~~~~~-g~~~l~~it~-~~i~~~~~~l~~ 60 (103)
T 2oxo_A 31 IKAIRRGL-PDAPLEDITT-KEIAAMLNGYID 60 (103)
T ss_dssp HHHHHHHS-CSCBGGGCCH-HHHHHHHHHHHH
T ss_pred HHHHHHHH-CcCchhhCCH-HHHHHHHHHHHH
Confidence 44455666 6789999844 899999998864
No 10
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=29.18 E-value=5.1e+02 Score=27.02 Aligned_cols=56 Identities=16% Similarity=0.197 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHHhccccccCCCCCc-hhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy7356 694 NGIKKQLAETILTELNKGLTFNTKSKTN-KTDLMTKLGQLAVVMDGHKRSFEYIQDY 749 (1083)
Q Consensus 694 DGIRKELV~~ia~alh~~LiF~~k~~~~-~~el~~~L~~L~~~~~g~rrSFEYIQDY 749 (1083)
...+-|+++.+..-+|..+.|-..+-.. ..++.+.+..|...+...|..|+.=...
T Consensus 190 ~kk~~e~le~l~~~~~a~~~ff~~g~e~~~~~~~p~~~~l~~~l~~~r~~~~~~~~~ 246 (265)
T 2q12_A 190 YKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLANIGTSVQNVRREMDSDIET 246 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777666666554322110 1378888899999999988887765544
No 11
>2khq_A Integrase; all-alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus saprophyticus subsp}
Probab=23.27 E-value=2.8e+02 Score=23.83 Aligned_cols=30 Identities=17% Similarity=0.360 Sum_probs=22.5
Q ss_pred HHHHHHHHccCCCCCCccccchhHHHHHHHHH
Q psy7356 435 RLNYLIELFSGAKPLPKVHKNQQLEKWFSEIN 466 (1083)
Q Consensus 435 rm~eLae~FsG~~pL~r~~kne~L~~WF~~is 466 (1083)
.++.+..+| |..|+..+.. ..+++|+..+.
T Consensus 31 ~~~~~~~~~-g~~~l~~it~-~~i~~~~~~l~ 60 (110)
T 2khq_A 31 AYKHIKDHF-RHKLLKDIKR-TEYQKFLNEYG 60 (110)
T ss_dssp HHHHHHHHC-SSCBGGGCCH-HHHHHHHHHHH
T ss_pred HHHHHHHHH-CcCCHhhCCH-HHHHHHHHHHH
Confidence 344466666 6789999854 88999999885
No 12
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=22.93 E-value=1.2e+02 Score=30.37 Aligned_cols=70 Identities=20% Similarity=0.301 Sum_probs=48.9
Q ss_pred eChhhhhHhHHHHHHHHHHHHHHhccccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccc---hhhHHHHH
Q psy7356 686 IDPKQLLHNGIKKQLAETILTELNKGLTFNTKSKTNKTDLMTKLGQLAVVMDGHKRSFEYIQDYVGIYG---LKVWYEVL 762 (1083)
Q Consensus 686 vDPkqLLEDGIRKELV~~ia~alh~~LiF~~k~~~~~~el~~~L~~L~~~~~g~rrSFEYIQDYvnI~G---LkIW~eE~ 762 (1083)
||-=|=+=+++||..+.| +.++ ....|..+.+-|+.-+...+=+++||+.-- =|||..|+
T Consensus 30 VDDLQD~VE~LRkDV~~R-------------gvrP----~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~EL 92 (141)
T 3okq_A 30 VDDLQDVIEIMRKDVAER-------------RSQP----AKKKLETVSKDLENAQADVLKLQEFIDTEKPHWKKTWEAEL 92 (141)
T ss_dssp HHHHHHHHHHHHHHHHHH-------------CCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHc-------------CCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHH
Confidence 455555566777777654 2233 456677778888888888888888887643 58999999
Q ss_pred HHHHHhhhhHHhhhcc
Q psy7356 763 NQVIEETVSSEIDSLS 778 (1083)
Q Consensus 763 sRIInynVE~Ecn~Fl 778 (1083)
..| -|...|+
T Consensus 93 ~~V------ceEQqfl 102 (141)
T 3okq_A 93 DKV------CEEQQFL 102 (141)
T ss_dssp HHH------HHHHHHH
T ss_pred HHH------HHHHHHH
Confidence 999 4445576
No 13
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=20.61 E-value=99 Score=28.45 Aligned_cols=59 Identities=15% Similarity=0.448 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHHhhhhcccCCcchhhHHHHHHHHHHHHHHhhhCcccchHHHHHHHHHHHHHHHHHHHccccchhhhhhh
Q psy7356 456 QQLEKWFSEINSHLESLNFSDEMGSVQKIVQFIQALDSVKEFHGLSSNAQVEQWIDESIKYLNIMVRSVNVKDKVMIHLQ 535 (1083)
Q Consensus 456 e~L~~WF~~is~~I~~Ld~~d~~~agRkI~qLiqALeeVqefhql~~nlqVkQ~L~etr~~L~~M~r~inike~vl~~i~ 535 (1083)
|...+|++.+.+.++++.- ++.+.. -++.|+.|++-||.+ .+. +.
T Consensus 9 Eki~kYi~~l~eaL~~i~~------a~~~l~------------------mA~~Y~~Da~~fl~k--------GD~---v~ 53 (86)
T 2oo2_A 9 RETLKWLERIEERVKEIEG------DEGFMR------------------NIEAYISDSRYFLEK--------GDL---VR 53 (86)
T ss_dssp HHHHHHHHHHHHHGGGEEE------CHHHHH------------------HHHHHHHHHHHHHHT--------TCH---HH
T ss_pred HHHHHHHHHHHHHHHHhhh------HHHHHH------------------HHHHHHHHHHHHHHc--------CCH---HH
Confidence 5677788888777777642 122222 256788888888752 222 25
Q ss_pred hhcccchhhhhhhh
Q psy7356 536 IIADLSYAWKLIDQ 549 (1083)
Q Consensus 536 ~i~D~SYAW~lid~ 549 (1083)
..+.+||||..+|-
T Consensus 54 Ala~isYa~GwLDA 67 (86)
T 2oo2_A 54 AFECVVWAWAWLEI 67 (86)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 67889999999874
Done!