Query psy7356
Match_columns 1083
No_of_seqs 89 out of 91
Neff 4.5
Searched_HMMs 13730
Date Sat Aug 17 00:41:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7356.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7356hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2itba1 a.25.1.7 (A:3-201) Put 33.9 1.5E+02 0.011 28.6 11.7 144 287-476 33-191 (199)
2 d1rqga1 a.27.1.1 (A:397-606) M 15.1 1.5E+02 0.011 27.7 7.2 60 89-155 55-115 (210)
3 d1hmca_ a.26.1.2 (A:) Macropha 14.4 36 0.0026 31.7 2.2 77 914-997 9-95 (148)
4 d1u5ta1 a.4.5.54 (A:20-164) Va 14.1 36 0.0026 31.8 2.2 49 550-603 27-75 (145)
5 d2elba1 a.238.1.1 (A:6-273) DC 13.3 4.9E+02 0.036 24.3 12.6 41 549-589 105-145 (268)
6 d2pmra1 a.8.11.1 (A:3-77) Unch 12.0 2.2E+02 0.016 23.6 6.4 65 456-549 3-67 (75)
7 d1uana_ c.134.1.1 (A:) Hypothe 11.0 19 0.0014 34.9 -0.8 36 205-240 86-121 (227)
8 d1bg1a1 a.47.1.1 (A:136-321) S 10.0 6.3E+02 0.046 23.5 11.5 84 411-522 94-183 (186)
9 d2pqrb1 a.118.8.1 (B:5-128) Mi 9.9 46 0.0034 30.1 1.4 75 535-628 34-116 (124)
10 d1ho8a_ a.118.1.9 (A:) Regulat 9.2 5.8E+02 0.042 27.2 10.5 74 391-489 329-402 (477)
No 1
>d2itba1 a.25.1.7 (A:3-201) Putative tRNA-(Ms(2)io(6)a)-hydroxylase PP2188 {Pseudomonas putida [TaxId: 303]}
Probab=33.85 E-value=1.5e+02 Score=28.61 Aligned_cols=144 Identities=15% Similarity=0.167 Sum_probs=78.9
Q ss_pred cccccHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhccCcHHHHHHHhhhhhhhhhhhhccCC
Q psy7356 287 AWEPYRAAKLALSNSLETSNVKQYSTFHTDRIIKLTSQTNQLLKDGALTEENVLDNTNKILNLARECNVTIRWLVLHTSS 366 (1083)
Q Consensus 287 ~W~~ykAA~~AL~ntl~~~~vk~~~~~~~~~~~~~~~~~~~~l~EG~L~ee~vLdni~~l~~~iR~~Nv~lRWl~LHt~~ 366 (1083)
|+.--|||.+||+=...=..=.++. .....+.+| | |.|...++.+|++=|+.++=
T Consensus 33 A~cEkKAA~~Alsli~rYp~~~~Lv-----------~~m~~La~E----E---L~HF~qV~~im~~Rgi~l~~------- 87 (199)
T d2itba1 33 KNCEFKAASTALSLIAKYNTHLDLI-----------NMMSRLARE----E---LVHHEQVLRLMKRRGVPLRP------- 87 (199)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCHHHH-----------HHHHHHHHH----H---HHHHHHHHHHHHHTTCCCCC-------
T ss_pred HHHHHHHHHHHHHHHHHCCChHHHH-----------HHHHHHHHH----H---HHHHHHHHHHHHHcCCCCCC-------
Confidence 6777899999996432222211222 222222221 1 45666666788888877631
Q ss_pred CccccccccchhhhHHHHHHHhhCCChhHHHHHHHhhhHhHH---------------HHHHHHHHHHHhHHHhHHHhHHH
Q psy7356 367 NHETISGVAASKKSKQIKDIVSNNINMSDVFQLILNTSEFEL---------------KIKELLKALLEDKQNKWNSCKQE 431 (1083)
Q Consensus 367 ~~~~~~~~~~~k~~r~l~~~v~~~~~~~~l~~LLL~taqlE~---------------~lk~~~~~lL~~K~~~W~~~K~e 431 (1083)
++.+.-.+++++.|.++ .+..+++-||-.|=.|- +|++.|+.|+.+-..-+.
T Consensus 88 -------~~~~~Ya~~L~~~~r~~-~~~~llD~Llv~AlIEARScERF~lLa~~ld~eL~~FY~~L~~SEarH~~----- 154 (199)
T d2itba1 88 -------VSAGRYASGLRRLVRAH-EPVKLVDTLVVGAFIEARSCERFAALVPHLDEELGRFYHGLLKSEARHYQ----- 154 (199)
T ss_dssp -------CCCCSHHHHHHTTSCSS-TTHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHH-----
T ss_pred -------CCccHHHHHHHHHccCC-ChHHHHHHHHHHHHHhhhHHhHHHHHHhhCCHHHHHHHHHHHHHHHHHHH-----
Confidence 11234566777777554 67778887777665553 567777777765443333
Q ss_pred HHHHHHHHHHHccCCCCCCccccchhHHHHHHHHHHhhhhcccCC
Q psy7356 432 CNERLNYLIELFSGAKPLPKVHKNQQLEKWFSEINSHLESLNFSD 476 (1083)
Q Consensus 432 ~~erm~eLae~FsG~~pL~r~~kne~L~~WF~~is~~I~~Ld~~d 476 (1083)
---+||.-+++.. .-++-++.|...=++=|+++|..-
T Consensus 155 ---~yl~LA~~~~~~~-----~V~~Rl~~ll~~Eaeli~~~d~~~ 191 (199)
T d2itba1 155 ---GYLKLAHNYGDEA-----DIARCVELVRAAEMELIQSPDQEL 191 (199)
T ss_dssp ---HHHHHHHHHSCHH-----HHHHHHHHHHHHHHHHHHSEESSC
T ss_pred ---HHHHHHHHHCCHh-----HHHHHHHHHHHHHHHHHcCCCCCC
Confidence 2334555543321 123445555555555566665443
No 2
>d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]}
Probab=15.10 E-value=1.5e+02 Score=27.74 Aligned_cols=60 Identities=17% Similarity=0.236 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhhcCc-cchHHHHHHHHHHHHHHHHHhhcCCcc
Q psy7356 89 RFYVVFENIYKFAINLNQYVENLENNVYIQESIESVFLDE-EGCQLMCEALYLYGVMLLVTELYVPGA 155 (1083)
Q Consensus 89 RFy~lFesI~~Y~~dl~~yleel~~g~yiq~t~e~vl~d~-~GkQLlcEalyLyGvmLL~lD~~i~G~ 155 (1083)
+|-.+.+.|..++...|+|+++-.. |...=.|. +-.+.+..+++..-.+.++|-=-+|-.
T Consensus 55 ~~~~al~~i~~l~~~~N~yi~~~~P-------W~l~k~~~~~~~~vl~~~~~~~~~l~ilL~PfmP~~ 115 (210)
T d1rqga1 55 RFKDALKRVMSLASFGNRYFDHKQP-------WKTAKEDKVRTGTTVNISLQIVKALGILLEPFLPDA 115 (210)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCH-------HHHTTTCHHHHHHHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-------hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 5777888899999999999886432 32221122 223455566666666677777767643
No 3
>d1hmca_ a.26.1.2 (A:) Macrophage colony-stimulating factor (M-CSF) {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.36 E-value=36 Score=31.69 Aligned_cols=77 Identities=19% Similarity=0.234 Sum_probs=43.1
Q ss_pred HHhHHHHHHHHHHHHhhhhhccc-----CchHHHHHHHHhHHHH--HHHH-hhhc--CCCCCCCCCchHHHHHHHHHHHH
Q psy7356 914 QIGQLQILRQLLRHELSSCAQFE-----SKNLHLCLETLDKSLL--NDLR-LYYS--KEGMSLPTDNQELMTSICAYLKW 983 (1083)
Q Consensus 914 ~IGQ~QLLR~~Ia~eL~~s~K~~-----s~~L~~aL~tlN~all--~di~-~h~~--dp~~p~p~~~~~ll~eL~~~L~~ 983 (1083)
.-|+++.||+.|.+||+..|-+- -.+|.-.+-=+-+|.. .|+- .|++ |-+ | .+.-...|.+|+-.+.
T Consensus 9 t~gHLl~L~~LIdnQletgCsIty~Fveq~~L~~~VCYlKaAfp~ilell~~~fRy~~~s-~-N~~~v~~Lq~ls~~l~- 85 (148)
T d1hmca_ 9 GSGHLQSLQRLIDSQMETSCQITFEFVDQEQLKDPVCYLKKAFLLVQDIMEDTMRFRDNT-P-NAIAIVQLQELSLRLK- 85 (148)
T ss_pred chhHHHHHHHHHHHHHhccceEEEEEecHHhCCCchhhhHHhHHHHHHHHHHHhccccCC-C-cHHHHHHHHHHHHHhh-
Confidence 45899999999999999999864 3444443444444432 2222 2333 311 1 1112345556544333
Q ss_pred hcccCccccceecc
Q psy7356 984 IGQDNPYHKIYVTS 997 (1083)
Q Consensus 984 ~Gi~dPl~kIYitt 997 (1083)
.++.+.|--.
T Consensus 86 ----~c~~~~~Ee~ 95 (148)
T d1hmca_ 86 ----SCFTKDYEEH 95 (148)
T ss_pred ----hccchhhhhc
Confidence 5777777543
No 4
>d1u5ta1 a.4.5.54 (A:20-164) Vacuolar sorting protein SNF8 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.13 E-value=36 Score=31.78 Aligned_cols=49 Identities=20% Similarity=0.491 Sum_probs=34.2
Q ss_pred hHHHHHHHhhhCCchHHHHHHHHHHHHhhccccccccccccCcchhHHHHHhHH
Q psy7356 550 FTPLMQDAIKNEPSLLIKLRALFLKLSTSLEIPLLRINQAESEDLISVSQYYSN 603 (1083)
Q Consensus 550 yt~~mQ~~Ik~~P~~v~kLRa~FLKLaS~L~lPLlRI~Qa~S~Dl~sVS~yYS~ 603 (1083)
|...=.+.|++||. .|+-|.+|.+++++--+=..-. ...+..|..||=.
T Consensus 27 FA~kH~~eI~~np~----FR~~F~~MC~~iGVDPLas~~~-~~~~lg~gDFYyE 75 (145)
T d1u5ta1 27 FAKKHNSELQASPE----FRSKFMHMCSSIGIDPLSLFDR-DKHLFTVNDFYYE 75 (145)
T ss_dssp HHHHCTTTTTTCHH----HHHHHHHHHHHHTCCHHHHTTS-SGGGTTHHHHHHH
T ss_pred HHHHhHHHhhcCHH----HHHHHHHHHHHhCCChhhcCCC-ccccccccchHHH
Confidence 44444567999998 8999999999999943322222 3346678888843
No 5
>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.27 E-value=4.9e+02 Score=24.32 Aligned_cols=41 Identities=10% Similarity=0.146 Sum_probs=31.0
Q ss_pred hhHHHHHHHhhhCCchHHHHHHHHHHHHhhccccccccccc
Q psy7356 549 QFTPLMQDAIKNEPSLLIKLRALFLKLSTSLEIPLLRINQA 589 (1083)
Q Consensus 549 ~yt~~mQ~~Ik~~P~~v~kLRa~FLKLaS~L~lPLlRI~Qa 589 (1083)
..+..|+.-++.|...+..+|..|-|.+.-.|--+.|.-+.
T Consensus 105 ~~~~pL~~f~~~di~~~ke~kk~fek~~~~yd~~l~k~~~~ 145 (268)
T d2elba1 105 AMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYSRL 145 (268)
T ss_dssp HTHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667888888888888999999988877766666655443
No 6
>d2pmra1 a.8.11.1 (A:3-77) Uncharacterized protein MTH1690 {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=12.01 E-value=2.2e+02 Score=23.55 Aligned_cols=65 Identities=20% Similarity=0.338 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHHhhhhcccCCcchhhHHHHHHHHHHHHHHhhhCcccchHHHHHHHHHHHHHHHHHHHccccchhhhhhh
Q psy7356 456 QQLEKWFSEINSHLESLNFSDEMGSVQKIVQFIQALDSVKEFHGLSSNAQVEQWIDESIKYLNIMVRSVNVKDKVMIHLQ 535 (1083)
Q Consensus 456 e~L~~WF~~is~~I~~Ld~~d~~~agRkI~qLiqALeeVqefhql~~nlqVkQ~L~etr~~L~~M~r~inike~vl~~i~ 535 (1083)
|.+.+|+..+.+-++++.-......-+.+..+ ++.|+.|++-||.+ .+ -+.
T Consensus 3 ErvekYi~~~eeAl~k~~~~~~~~~~e~il~m------------------a~~Y~~Da~~f~~~--------gd---~v~ 53 (75)
T d2pmra1 3 ERIEKDLELLEKNLMEMKSIKLSDDEEAVVER------------------ALNYRDDSVYYLEK--------GD---HIT 53 (75)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHH------------------HHHHHHHHHHHHHT--------TC---HHH
T ss_pred HHHHHHHHHHHHHHHhccccccCccHHHHHHH------------------HHHHHHHHHHHHHC--------CC---hhH
Confidence 56778888888888877532222221222221 45689999888753 22 134
Q ss_pred hhcccchhhhhhhh
Q psy7356 536 IIADLSYAWKLIDQ 549 (1083)
Q Consensus 536 ~i~D~SYAW~lid~ 549 (1083)
..+.++|||..||.
T Consensus 54 A~~~i~YA~g~lDA 67 (75)
T d2pmra1 54 SFGCITYAHGLLDS 67 (75)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56788999999986
No 7
>d1uana_ c.134.1.1 (A:) Hypothetical protein TT1542 {Thermus thermophilus [TaxId: 274]}
Probab=11.03 E-value=19 Score=34.91 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=29.1
Q ss_pred HHHHHHHHhcccccccccccCCCCCcchhhhhcccc
Q psy7356 205 LVNMILGKLRTDDIYHSIVAYPLPQHRSTALANQAS 240 (1083)
Q Consensus 205 ~V~~vigrLrsDDiy~q~~~yP~p~HRs~ala~Qas 240 (1083)
-+..+|..++-|=||-......||+||.++-+..++
T Consensus 86 ~l~~~i~~~~PdiV~t~~~~d~H~DH~~~~~av~~A 121 (227)
T d1uana_ 86 KLAQALRRLRPRVVFAPLEADRHPDHTAASRLAVAA 121 (227)
T ss_dssp HHHHHHHHHCEEEEEEECSCCSSHHHHHHHHHHHHH
T ss_pred hhhhheecccccEEEecCccccccchhhHHHHHHHH
Confidence 355678888888899888888999999987777655
No 8
>d1bg1a1 a.47.1.1 (A:136-321) STAT3b {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.95 E-value=6.3e+02 Score=23.54 Aligned_cols=84 Identities=14% Similarity=0.305 Sum_probs=50.8
Q ss_pred HHHHHHHHHhHHHhHHHhHHHHHHHHHHHHHHccCCCCCCccccchhHHHHHHHHHHhhhhcccCCcchhhHHHHHHHHH
Q psy7356 411 KELLKALLEDKQNKWNSCKQECNERLNYLIELFSGAKPLPKVHKNQQLEKWFSEINSHLESLNFSDEMGSVQKIVQFIQA 490 (1083)
Q Consensus 411 k~~~~~lL~~K~~~W~~~K~e~~erm~eLae~FsG~~pL~r~~kne~L~~WF~~is~~I~~Ld~~d~~~agRkI~qLiqA 490 (1083)
..+-..+|+++=..|...-+-|| .|.+|-+.. +.||.||+.+++- |.|+-|.
T Consensus 94 ~~lq~~ll~~eL~~WKrrQQlA~----------iG~P~~~~L---DqLQ~W~e~lAe~---------------i~q~Rqq 145 (186)
T d1bg1a1 94 EYVQKTLTDEELADWKRRQQIAC----------IGGPPNICL---DRLENWITSLAES---------------QLQTRQQ 145 (186)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHH----------TTCCCCCCC---HHHHHHHHHHHHH---------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh----------CCCCcccch---HHHHHHHHHHHHH---------------HHHHHHH
Confidence 34446678888888976665555 577776665 8899999887654 4555555
Q ss_pred HHHHHhhhC---ccc---chHHHHHHHHHHHHHHHHHH
Q psy7356 491 LDSVKEFHG---LSS---NAQVEQWIDESIKYLNIMVR 522 (1083)
Q Consensus 491 LeeVqefhq---l~~---nlqVkQ~L~etr~~L~~M~r 522 (1083)
|+.++++-+ .++ ...+-.-.+.+..+|..++.
T Consensus 146 lk~l~~l~~k~~y~~dpi~~~~~~L~~~~~~Ll~~Lv~ 183 (186)
T d1bg1a1 146 IKKLEELQQKVSYKGDPIVQHRPMLEERIVELFRNLMK 183 (186)
T ss_dssp HHHHHHHHHHSCCTTCTTTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCccccchhHHHHHHHHHHHHHHh
Confidence 555555421 122 22444444555555555543
No 9
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.89 E-value=46 Score=30.09 Aligned_cols=75 Identities=16% Similarity=0.250 Sum_probs=48.9
Q ss_pred hhhcccchhhhhhh-hhHHHHHHHhhhCCchHHHHHHHHHHHHhhccccccccccccCcc---hhHHHHHhHHHH---HH
Q psy7356 535 QIIADLSYAWKLID-QFTPLMQDAIKNEPSLLIKLRALFLKLSTSLEIPLLRINQAESED---LISVSQYYSNEL---VT 607 (1083)
Q Consensus 535 ~~i~D~SYAW~lid-~yt~~mQ~~Ik~~P~~v~kLRa~FLKLaS~L~lPLlRI~Qa~S~D---l~sVS~yYS~eL---v~ 607 (1083)
.+=+=|.|||.++. .+...++++|+- |+.++ |. -|-. .-| ...|.-|.-++. ..
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~l-------Le~~~-~~-----~p~~------~rd~lY~Lav~yyklgdy~~A~~ 94 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKI-------LTDIY-KE-----AESR------RRECLYYLTIGCYKLGEYSMAKR 94 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHH-------HHHHH-HH-----CGGG------HHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHH-------HHHHH-hc-----Cchh------HHHHHHHHHHHHHHHhhHHHHHH
Confidence 34467999999994 588888888876 55543 21 1111 112 456666655554 46
Q ss_pred HHHHHHhhcchHHHHH-HHHHH
Q psy7356 608 YMQHVLQIIPQTMFTL-MADIT 628 (1083)
Q Consensus 608 ~vR~VLqIIP~smF~i-L~~Ii 628 (1083)
|++++|+|=|..+-.. |.+.|
T Consensus 95 ~~~~~L~ieP~n~qA~~L~~~I 116 (124)
T d2pqrb1 95 YVDTLFEHERNNKQVGALKSMV 116 (124)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHccCCCcHHHHHHHHHH
Confidence 8999999999987665 44444
No 10
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.23 E-value=5.8e+02 Score=27.24 Aligned_cols=74 Identities=18% Similarity=0.270 Sum_probs=45.2
Q ss_pred CChhHHHHHHHhhhHhHHHHHHHHHHHHHhHHHhHHHhHHHHHHHHHHHHHHccCCCCCCccccchhHHHHHHHHHHhhh
Q psy7356 391 INMSDVFQLILNTSEFELKIKELLKALLEDKQNKWNSCKQECNERLNYLIELFSGAKPLPKVHKNQQLEKWFSEINSHLE 470 (1083)
Q Consensus 391 ~~~~~l~~LLL~taqlE~~lk~~~~~lL~~K~~~W~~~K~e~~erm~eLae~FsG~~pL~r~~kne~L~~WF~~is~~I~ 470 (1083)
++++||.+-| .++ .++.++-. .+-+.|++++ +|+.||.--.|-++++|.+ |=.|..+
T Consensus 329 ~~Dedl~edl---~~L----~~~L~~~~-k~lTsfd~Y~----------~Ev~Sg~L~WSP~H~se~F--W~EN~~k--- 385 (477)
T d1ho8a_ 329 YSDEELRQDI---SNL----KEILENEY-QELTSFDEYV----------AELDSKLLCWSPPHVDNGF--WSDNIDE--- 385 (477)
T ss_dssp CSSHHHHHHH---HHH----HHHHHHHH-HTCCHHHHHH----------HHHHHTCCCCCGGGGCHHH--HHHHSGG---
T ss_pred CCCHHHHHHH---HHH----HHHHHHHH-HhcCcHHHHH----------HHHhcCCCCCCCCcCChhH--HHHHHHh---
Confidence 7777765532 222 23333222 4556788775 5678999999999999999 9888543
Q ss_pred hcccCCcchhhHHHHHHHH
Q psy7356 471 SLNFSDEMGSVQKIVQFIQ 489 (1083)
Q Consensus 471 ~Ld~~d~~~agRkI~qLiq 489 (1083)
++-+|- ..-|++.++++
T Consensus 386 -f~e~~~-~llk~L~~lL~ 402 (477)
T d1ho8a_ 386 -FKKDNY-KIFRQLIELLQ 402 (477)
T ss_dssp -GSSGGG-HHHHHHHHHHH
T ss_pred -hcccch-HHHHHHHHHHh
Confidence 332222 33455555544
Done!