RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7356
(1083 letters)
>gnl|CDD|220663 pfam10266, Strumpellin, Hereditary spastic paraplegia protein
strumpellin. This is a family of proteins conserved from
plants to humans, in which two closely situated point
mutations in the human protein lead to the condition of
hereditary spastic paraplegia. Strumpellin contains one
known domain called a spectrin repeat that consists of
three alpha-helices of a characteristic length wrapped in
a left-handed coiled coil. The spectrin proteins have
multiple copies of this repeat, which can then form
multimers in the cell. Spectrin associates with the cell
membrane via spectrin repeats in the ankyrin protein. The
spectrin repeat is a structural platform for cytoskeletal
protein assemblies.
Length = 1077
Score = 1122 bits (2905), Expect = 0.0
Identities = 477/1084 (44%), Positives = 720/1084 (66%), Gaps = 40/1084 (3%)
Query: 20 NAIIAELLRLKDHIPSIFQQTDVNKQYSDLIIDFSYFSQNETVDNKIEGSQQLQELDEKI 79
++IIAELLRL +HIP F+ +Y+ +I+DFSYF + ++ KIE +L ELDE+
Sbjct: 1 SSIIAELLRLSEHIPRDFRTHPEQSKYAKIILDFSYFKAQDQIEKKIESDPELLELDEEF 60
Query: 80 RDTYLEILVRFYVVFENIYKFAINLNQYVENLENNVYIQESIESVFLDEEGCQLMCEALY 139
R+T++E+L RFY +FE+IYK+ +LN+Y+E LE VYIQ+++E+V DE+G QL+CEALY
Sbjct: 61 RETHIELLERFYRLFESIYKYVQDLNRYIEELEEGVYIQQTLETVLQDEDGKQLLCEALY 120
Query: 140 LYGVMLLVTELYVPGAIREKLLVSYYRY-SLNKSQNFDEVCQLFSSSKKGNG-------Y 191
LYGVMLL+ + +PG +RE+LLVSYYRY N DEVC+L S+ G G Y
Sbjct: 121 LYGVMLLLMDYKIPGKVRERLLVSYYRYKGSGDISNIDEVCKLCRSTGYGAGSAKRPPNY 180
Query: 192 PENVFSRIPINENLVNMILGKLRTDDIYHSIVAYPLPQHRSTALANQASMLFVCLYFDTS 251
PE F+R+P+ E+ + M++G++R+DDIY+ + YPLP+HRSTALA QA ML+V L+F
Sbjct: 181 PEEYFNRVPLPESFITMVIGRIRSDDIYNMLSNYPLPEHRSTALALQAGMLYVLLFFSPQ 240
Query: 252 VLHNNTANMREVVDKFFPDNWIVSIYMGITVQLIDAWEPYRAAKLALSNSLETSNVKQYS 311
+L+N A MRE+VDK F DNW++S YMGITV L AWEP++AA+ A++N++ NV+
Sbjct: 241 ILNNQGAIMREIVDKHFADNWVISYYMGITVDLSVAWEPFKAARTAINNTITQENVQYLC 300
Query: 312 TFHTDRIIKLTSQTNQLLKDGALTEENVLDNTNKILNLARECNVTIRWLVLHTSSNHETI 371
+ + +L + ++L++G LTEE VLDN +K+LNL RECNV +RWL+LHTS + E
Sbjct: 301 QRYRTSMSELLTSVQEVLREGVLTEEYVLDNIHKLLNLIRECNVVLRWLLLHTSRSAEAA 360
Query: 372 SGVAASKKSKQIKDIVSNNINMSDVFQLILNTSEFELKIKELLKALLEDKQNKWNSCKQE 431
S ++ KQ++D++ + ++ QL+LNT++ E ++ + LL++K +W K+E
Sbjct: 361 S----NESQKQVRDLILYKFSDDELLQLLLNTAQLEFTLRNMFTTLLQEKDERWEESKKE 416
Query: 432 CNERLNYLIELFSGAKPLPKVHKNQQLEKWFSEINSHLESLNFSDEMGSVQKIVQFIQAL 491
ER+ L E FSG KPL KV K++ L+KWF+EI+ +E L++ D + +KI Q IQAL
Sbjct: 417 AVERMQELAEFFSGTKPLSKVKKDENLQKWFAEISKEIEKLDYDDSTAAGRKIQQLIQAL 476
Query: 492 DSVKEFHGLSSNAQVEQWIDESIKYLNIMVRSVNVKDKVMIHLQIIADLSYAWKLIDQFT 551
+ V+EFH LSSN QV+Q++ E+ + L+ M+R++N+K+ V+I +Q + D SYAW+L+ +
Sbjct: 477 EEVQEFHQLSSNLQVKQYLQETRQDLHQMIRTINIKESVLITIQTVGDFSYAWELLSSYV 536
Query: 552 PLMQDAIKNEPSLLIKLRALFLKLSTSLEIPLLRINQAESEDLISVSQYYSNELVTYMQH 611
PLMQ+ IK++P L++KLRA FLKL++ LE+PLLRINQAES DL SVS+YYS ELV++++
Sbjct: 537 PLMQENIKSDPFLVVKLRATFLKLASILELPLLRINQAESPDLSSVSEYYSGELVSFVRK 596
Query: 612 VLQIIPQTMFTLMADITNLQTNVMLEVPTRLDKDKLKDYAQLDTRFEIAHLTHSISVFTQ 671
VLQIIP++MF ++A I +LQTNV+ E+PTRL+KD+LK+YAQL+ R ++A LT SISVFT+
Sbjct: 597 VLQIIPESMFEILAQIIDLQTNVLKELPTRLEKDELKEYAQLEERSQLAKLTASISVFTE 656
Query: 672 GILRMKSTLVGIVCIDPKQLLHNGIKKQLAETILTELNKGLTFNTKSKTNKTDLMTKLGQ 731
GIL M++TLVG++ +DPKQLL +GI+K+L + I L+ L F+ K K+ ++ KL +
Sbjct: 657 GILAMETTLVGVIEVDPKQLLEDGIRKELVKQITKALHSQLIFDNKKKSKASEFDEKLDK 716
Query: 732 LAVVMDGHKRSFEYIQDYVGIYGLKVWYEVLNQVIEETVSSEIDSLSSTSGC-------- 783
L ++G +RSFEYIQDYV I+GLK+W E ++++ V E ++
Sbjct: 717 LGRRIEGFRRSFEYIQDYVNIHGLKIWQEEFSRIVNYNVEMECNAFLKKKVYEWQSEYQS 776
Query: 784 ----------------TFVGRLADELVSMTDPKQSMYVENTTAWYNVKTQKEIFNMKIFS 827
F+GRLA EL+ +TDPK ++Y+++ WY+ KT KE+ ++ FS
Sbjct: 777 ESIPIPKFPPLDGESVNFIGRLARELLRITDPKTTVYLDSYGGWYDRKTHKEVLGIRTFS 836
Query: 828 LIIKAIGISGLVGLDNVLGFRIVKNIQSVFSQL-FNYSNDKPCQDILAQMSKELSPNTNP 886
I +A+G +GL GLD +L F + K +Q S L +K + L + EL P +
Sbjct: 837 RICEAVGPAGLTGLDRLLSFMLAKELQQFLSTLQEKLELEKRWRGALTNLQNELRPTSAF 896
Query: 887 ISNPTKLYPQYLSKMNKYLMGVNDSLIQIGQLQILRQLLRHELSSCAQFESKNLHLCLET 946
N K+Y Q +++ + D L QIGQ+Q+LR+ + +EL+ + +S +L LET
Sbjct: 897 PENSLKIYEQLTKRISPASAELLDWLAQIGQIQLLRRQIANELNLSCKIDSTSLFAALET 956
Query: 947 LDKSLLNDLRLYYSKEGMSLPTDNQELMTSICAYLKWIGQDNPYHKIYVTSRNIPYFPLF 1006
L+K++LND+ +Y + S P +++L+ + YL+ G +P KIY+T++ +P F L
Sbjct: 957 LNKAILNDIERHY-QSPDSNPYPSEDLLADLSKYLECAGLYDPLRKIYITTKPLPEFSLA 1015
Query: 1007 LFLYSLSVLSKVTYSSSQDLFLTKKGYEYCHTDCVVVLVGLHTLFHQFHKDIGEQYLVYL 1066
LFL++L L ++ Y + D + KK + D ++VGL TL QFH D +L YL
Sbjct: 1016 LFLFTLLQLPRLQYDDNLDSLVPKKKKDS--VDPTPLIVGLLTLLRQFHSDHTSLFLSYL 1073
Query: 1067 CQYI 1070
QY+
Sbjct: 1074 GQYV 1077
>gnl|CDD|223328 COG0250, NusG, Transcription antiterminator [Transcription].
Length = 178
Score = 33.1 bits (76), Expect = 0.46
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 358 RWLVLHTSSNHETISGVAASKKSKQIKDIVSNNINMSDVFQLILNTSEFELKIKELLKAL 417
RW V+ T S E KK K+ + + + M D+ +L +E +++K K +
Sbjct: 4 RWYVVQTYSGQE--------KKVKENLERKAELLGMEDLIFEVLVPTEEVVEVKGKRKVI 55
Query: 418 LEDK 421
+E K
Sbjct: 56 VERK 59
>gnl|CDD|182742 PRK10800, PRK10800, acyl-CoA thioesterase YbgC; Provisional.
Length = 130
Score = 30.9 bits (70), Expect = 1.2
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 12/59 (20%)
Query: 638 VPTRLDKDKLKDYAQLDTRFEIAHLTHSISVFTQGILRMKSTL-----VGIVCIDPKQL 691
P RLD L+ + EI + + FTQ I+ + TL V IVC+DP ++
Sbjct: 65 APARLDD-------MLEVQSEITSMRGTSLTFTQRIVNAEGTLLNEAEVLIVCVDPLKM 116
>gnl|CDD|179791 PRK04214, rbn, ribonuclease BN/unknown domain fusion protein;
Reviewed.
Length = 412
Score = 30.1 bits (68), Expect = 6.4
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 973 LMTSICAYL-KW-----IGQDNPYHKIYVTSRNIPYFPLFLFLYSLSVLSKVTYSSS 1023
L+T++ L KW +G Y +IY +P L+++L + VL + +SS
Sbjct: 216 LLTAVLLELVKWGFGFYLGNFQTYQRIYGAFAAVPILLLWIYLLWVLVLLGASLTSS 272
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family
protein.
Length = 348
Score = 30.0 bits (67), Expect = 6.5
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 554 MQDAIKNEPSLLIKLRALFLKLSTSLEIPLLRINQAESEDLISVSQYYSNELVTYMQHV 612
++D I+ PS I R + + +TS+ +L + +A SE L SN L + QH+
Sbjct: 141 IEDFIEEWPSTPISFREVTAEYATSVRALVLTLLEAISESLGLEKDRVSNTLGKHGQHM 199
>gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional.
Length = 499
Score = 30.2 bits (68), Expect = 6.8
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 460 KWFSEINSHLESLNFSDEMGSVQKIVQFIQALDSVKEFHGLS--SNAQVEQWIDESI 514
K + + +H+ SLNFS G V++I L +K+ H +S N+Q E + I
Sbjct: 92 KLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDEHTVSYGDNSQEETITAKYI 148
>gnl|CDD|184553 PRK14176, PRK14176, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 287
Score = 29.8 bits (67), Expect = 8.6
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 761 VLNQVIEETVSSEIDSLSSTSGCTFVGRLADELVSMTDPKQSMYV 805
L + IE V S ++ L S G LA LV DP MYV
Sbjct: 15 ALAKKIEAEVRSGVERLKSNRG--ITPGLATILVG-DDPASKMYV 56
>gnl|CDD|222783 PHA00350, PHA00350, putative assembly protein.
Length = 399
Score = 29.8 bits (67), Expect = 8.8
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 989 PYH--KIYVT--SRNIPYFPLFLFLYSLSVLS--KVTYSSSQDLFLTKKGYEYCH-TDCV 1041
PYH +YV+ ++ I Y L + + + ++S D+ L K GY++ DCV
Sbjct: 304 PYHDFSLYVSGHAKQIAYKKLTFYHVYIEAYTPRGFSFSLD-DIDLEKMGYQFEALDDCV 362
Query: 1042 VVL 1044
L
Sbjct: 363 YRL 365
>gnl|CDD|148303 pfam06619, DUF1149, Protein of unknown function (DUF1149). This
family consists of several hypothetical bacterial
proteins of unknown function.
Length = 126
Score = 28.5 bits (64), Expect = 8.8
Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 38 QQTDVNKQYSDLIIDFSYFSQNETVDNKIEGSQQLQELDE---KIRDTYLEILVRFYVVF 94
++ VN+ + D + +N T + +E + QL E DE + + T ++ F +V
Sbjct: 5 EKEFVNQYHYDARN-LEWEKENGTPETNLEVTFQLIEKDEEAKQEKGTSFVAVLPFMIVL 63
Query: 95 ENI 97
+
Sbjct: 64 DEF 66
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.382
Gapped
Lambda K H
0.267 0.0704 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 53,372,527
Number of extensions: 5255089
Number of successful extensions: 4719
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4711
Number of HSP's successfully gapped: 46
Length of query: 1083
Length of database: 10,937,602
Length adjustment: 107
Effective length of query: 976
Effective length of database: 6,191,724
Effective search space: 6043122624
Effective search space used: 6043122624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (28.5 bits)