RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7356
(1083 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 88.4 bits (218), Expect = 8e-18
Identities = 103/636 (16%), Positives = 197/636 (30%), Gaps = 163/636 (25%)
Query: 98 YK--FAINLNQYVENLENNVYIQESIESVFLDEEGCQLMCE------ALYLYGVMLL--- 146
YK ++ + +V+N + +Q+ +S+ EE ++ L L+ +L
Sbjct: 18 YKDILSVFEDAFVDNFDCK-DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 147 -VTELYVPGAIRE--KLLVSYYRY-----SLNKSQNFDEVCQLFSSSKKGNGYPENVFSR 198
+ + +V +R K L+S + S+ ++ +L++ ++ Y NV SR
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY--NV-SR 133
Query: 199 IPINENLVNMILGKLRTDDIYHSIVAYPLPQHRSTALANQASMLFVCLY----FDTSVLH 254
+ L KLR AL V + + +
Sbjct: 134 LQ-------PYL-KLRQ------------------ALLELRPAKNVLIDGVLGSGKTWVA 167
Query: 255 NNTANMREVVDKFFPDN--WIVSIYMGITVQLIDAWEP--YRAAKLALSNSLETSNVKQY 310
+ +V K W+ +++ + Y+ S S +SN+K
Sbjct: 168 LDVCLSYKVQCKM-DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 311 STFHTD---RIIKLTSQTNQLLKDGALTEENVLDN--TNKILN-LARECNVTIRWLVLHT 364
R++K N LL VL N K N C + L+ T
Sbjct: 227 IHSIQAELRRLLKSKPYENCLL---------VLLNVQNAKAWNAFNLSCKI----LL--T 271
Query: 365 SSNHETISGVAASKKSKQIKDIVSNNINMS-------DVFQLILNTSEFELKIKE----- 412
+ V + I ++ +M+ + L+ +L +E
Sbjct: 272 TRF----KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP-REVLTTN 326
Query: 413 -----LLKALLEDKQNKWNSCKQECNERLNYLIELFSGAKPLPKVHKNQQLEKWFSEINS 467
++ + D W++ K ++L +IE LE +E
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL-----------NVLE--PAEYRK 373
Query: 468 HLESLN-FSDEMGSVQKI-VQFIQAL----------DSVKEFHGLSSNAQVEQWIDESIK 515
+ L+ F S I + + V + H S VE+ ES
Sbjct: 374 MFDRLSVFPP---SA-HIPTILLSLIWFDVIKSDVMVVVNKLHKYSL---VEKQPKESTI 426
Query: 516 YLN--IMVRSVNVKDKVMIHLQIIADLSYAWKL---IDQFTPLMQD----------AIKN 560
+ + V ++++ +H I+ Y D P D
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVD--HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484
Query: 561 EPSLLIKL-RALFLKLSTSLE--IPLLRINQAESEDLISVSQYYSNELVTYMQHVLQIIP 617
E + L R +FL LE I S +++ Q +L Y ++ P
Sbjct: 485 EHPERMTLFRMVFLDFRF-LEQKIRHDSTAWNASGSILNTLQ----QLKFYKPYICDNDP 539
Query: 618 QTMFTLMADITNLQTNVMLEVPTRLDKDKLKDYAQL 653
L+ I + + ++ L K D ++
Sbjct: 540 -KYERLVNAILDF----LPKIEENLICSKYTDLLRI 570
Score = 71.0 bits (173), Expect = 1e-12
Identities = 96/620 (15%), Positives = 202/620 (32%), Gaps = 161/620 (25%)
Query: 379 KSKQIKDIVSNNINMSDVFQLILNTSEFELKIKELLKALLEDKQNK-----WNSCKQECN 433
++I I+ + +S +L K +E+++ +E+ + K E
Sbjct: 47 SKEEIDHIIMSKDAVSGTLRLF---WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103
Query: 434 ER-------LNYLIELFSGAKPLPKVHKNQQLEKWFSEINSHLESLNFSDE-----MGSV 481
+ + L++ + K + ++ + + ++ L L + +
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSR--LQPYLKLRQALLELRPAKNVLIDGVLGS 161
Query: 482 QKIVQFIQALDSVKEFHGLSSNAQVEQWIDESIKYLNIMVRSVNVKDKVMIHLQIIADLS 541
K + S K V+ +D I +LN +++ N + V+ LQ L
Sbjct: 162 GKTWVALDVCLSYK----------VQCKMDFKIFWLN--LKNCNSPETVLEMLQ---KLL 206
Query: 542 YAWKLIDQFTPLMQDAIKNEPSLLIKLRALFLKLSTSLEIPLLRINQAESE--DLISVSQ 599
Y ID D N LRI+ ++E L+
Sbjct: 207 Y---QIDPNWTSRSDHSSNIK---------------------LRIHSIQAELRRLLKSKP 242
Query: 600 YYSNELVTYMQHV--LQIIPQTMFTLMADITNLQTNVMLEVPTRLDKDKLKDYAQLDTRF 657
Y + LV + +V + F NL ++ + TR K + D+ T
Sbjct: 243 YENCLLV--LLNVQNAKAW--NAF-------NLSCKIL--LTTR-FKQ-VTDFLSAATTT 287
Query: 658 EIAHLTHSISVFTQG-ILRMKSTLVGIVCID-PKQ------LLHNGIKKQLAETILTELN 709
I+ L H T + + + D P++ + I + + + + T N
Sbjct: 288 HIS-LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 710 -KGLTFNTKSKTNKTDLMTKLGQLAVVMDGHKRSFEYIQDYVGIY--GLKVWYEVL---- 762
K + + + ++ L L +++ F+ + ++ + +L
Sbjct: 347 WKHVNCDKLTTIIESSL-NVLEP-----AEYRKMFDRL----SVFPPSAHIPTILLSLIW 396
Query: 763 NQVIEETVSSEIDSLSSTSGCTFVGRLADELVSMTDPKQSMY------------VENTTA 810
VI+ V ++ L S L ++ PK+S +EN A
Sbjct: 397 FDVIKSDVMVVVNKLHKYS-------LVEK-----QPKESTISIPSIYLELKVKLENEYA 444
Query: 811 -------WYNVKTQKEIFNMK-------IFSLI---IKAIGISGLVGLDNV--LGFRIVK 851
YN+ + ++ +S I +K I + L + L FR ++
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE 504
Query: 852 NIQSVFSQLFNYSNDKPCQDILAQM---SKELSPNTNPISNPTKLYPQYLSKMNKYLMGV 908
Q + ++ + L Q+ + N Y + ++ + +L +
Sbjct: 505 --QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP-------KYERLVNAILDFLPKI 555
Query: 909 NDSLIQIGQLQILRQLLRHE 928
++LI +LR L E
Sbjct: 556 EENLICSKYTDLLRIALMAE 575
Score = 64.9 bits (157), Expect = 1e-10
Identities = 90/663 (13%), Positives = 188/663 (28%), Gaps = 190/663 (28%)
Query: 23 IAELLRL---KDHIPSIFQQTDVNKQYSDLIIDFSYFSQNETVDNKIEGSQQLQE--LDE 77
+ ++ + K+ I I D + + Q E V +E ++ L
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAVSG-TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS 96
Query: 78 KIR----------DTYLEILVRFYVVFENIYKFAINLNQYVENLENNVYIQESIESVFLD 127
I+ Y+E R Y + K+ ++ Q L + ++V +D
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156
Query: 128 -EEGC---QLMCEALYLYGVM---------LLVTELYVPGAIREKLLVSYYRYSLNKSQN 174
G + + Y V L + P + E L Y+ N +
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 175 FDEVCQLFSSSKKGNGYPENVFSRIPINENLVNMILGKLRTDDIYHSIVAYPLPQHRSTA 234
D + + P L+ +L ++ ++ A
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLL--VL-----LNVQNAKAW--------NA 261
Query: 235 LANQASMLFVCLYFD-TSVLHNNTANMREVVDK---FFPDNW--IVSIYMGITVQLIDAW 288
+L + T L T + PD ++ Y+ Q +
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL--- 318
Query: 289 EPYRAAK---LALSNSLETSNVKQYSTFHTDRIIKLTSQTNQLLKDGALTEENVLDNTNK 345
P LS II + ++DG T +N
Sbjct: 319 -PREVLTTNPRRLS------------------IIA------ESIRDGLATWDN------- 346
Query: 346 ILNLARECNVTIRWLVLHTSSNHETISGVAASKKSKQIKD------IVSNNIN-MSDVFQ 398
W ++ I + + + + + + + +
Sbjct: 347 -------------WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393
Query: 399 LI---LNTSEFELKIKELLKALLEDKQNKWNSC---------KQECNERL---NYLIELF 443
LI + S+ + + +L K L +KQ K ++ K + +++ +
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453
Query: 444 SGAKPLPKVHKNQQLEK------WFSEINSHLESLNFSDEMGSVQKIVQFIQALDSVKEF 497
+ +PK + L ++S I HL+++ + M + + F LD F
Sbjct: 454 N----IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV--F---LD----F 500
Query: 498 HGLSSNAQVEQWIDESIKYLNIMVRSVNVKDKVMIHLQIIADLSYAWKLIDQFTPLMQDA 557
++++ I++ S AW +Q
Sbjct: 501 R----------FLEQKIRH-----------------------DSTAWNASGSILNTLQQL 527
Query: 558 -------IKNEPSLLIKLRAL--FLKLSTSLEIPLLRINQAESEDLISVSQYYSNELVTY 608
N+P + A+ FL +E L+ ++ DL+ ++ +E +
Sbjct: 528 KFYKPYICDNDPKYERLVNAILDFLP---KIEENLIC---SKYTDLLRIALMAEDEAIFE 581
Query: 609 MQH 611
H
Sbjct: 582 EAH 584
Score = 60.3 bits (145), Expect = 3e-09
Identities = 81/739 (10%), Positives = 191/739 (25%), Gaps = 241/739 (32%)
Query: 402 NTSEFELKIKELLKALLEDKQNKWNSCKQECNERLNYLIELFSGAKPLPKVHKNQQLEKW 461
T E + + K++L + + + +C + + + S +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNF-----DCKDVQDMPKSILSKEE-------------- 50
Query: 462 FSEINSHLESLNFSDEMGSVQKIVQFI--QALDSVKEF--HGLSSNAQVEQWIDESIKYL 517
I + D + ++ + + + V++F L N +++ IK
Sbjct: 51 IDHI------IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY---KFLMSPIKTE 101
Query: 518 NIMVRSVNVKDKVMIHLQIIADLSYAWKLIDQFTPLMQDAIKNEPSLLIKLRALFLKLST 577
+ M+ I + F + +KLR L+L
Sbjct: 102 Q--------RQPSMMTRMYIEQRDRLYNDNQVFAKYN----VSRLQPYLKLRQALLELRP 149
Query: 578 SLEIPL----------LRINQAESEDL----------ISVSQYYSNELVTYMQHVLQIIP 617
+ + + + ++ S + +++ S E V M
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML------- 202
Query: 618 QTMFTLMADITNLQTNVMLEVPTRLD--KDKL------KDYAQ----LDTRFEIAHLTHS 665
Q + + +++ + R+ + +L K Y L + +
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL---NVQNAKA- 258
Query: 666 ISVFTQG--IL---RMKSTLVGIVCIDPKQLLHNGIKKQLAETILTELNKGLTFNTKSKT 720
+ F IL R K + + + L + L
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-----LLKYLDC 313
Query: 721 NKTDL---MTKLGQLAVVMDGHKRSFEYIQDYVGIYGLKVWYEVLNQVIEETVSSEIDSL 777
DL + + + E I+D + + W V + + S ++ L
Sbjct: 314 RPQDLPREVLTTNPRRLSIIA-----ESIRDGLATW--DNWKHVNCDKLTTIIESSLNVL 366
Query: 778 SSTSGCTFVGRLADELVSMTDPKQSMYVENTTAWYNVKTQKEIFNMKIFSLIIKAIGISG 837
E + M+ + +F
Sbjct: 367 EP-----------AEY-------RKMFDR----------------LSVFP---------- 382
Query: 838 LVGLDNVLGFRIVKNI-QSVFSQLFNYSNDKPCQDILAQMSKELSPNTNPISNPTKLYPQ 896
+ +I + S ++ ++ ++ K P + +
Sbjct: 383 ----PSA-------HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431
Query: 897 YLSKMNKYLMGVNDSLIQIGQLQILRQLLRHELSSCAQFESKNLHLCLETLDKSLLN--D 954
YL L+ L +E LH +S+++ +
Sbjct: 432 YLE---------------------LKVKLENE---------YALH-------RSIVDHYN 454
Query: 955 LRLYYSKEGMSLPTDNQELMTSICAYLKW-IGQDNPYHKIYVTSRNIPYFPLFLFLYSLS 1013
+ + + + P +Q Y IG +H + LF ++
Sbjct: 455 IPKTFDSDDLIPPYLDQ--------YFYSHIG----HH--LKNIEHPERMTLFRMVF--- 497
Query: 1014 VLSKVTYSSSQDL-FLTKK----GYEYCHTDCVVVLVGLHTLFHQFHKDIGEQYLVYLCQ 1068
D FL +K + + ++ + + + D +Y +
Sbjct: 498 ----------LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA 547
Query: 1069 YIK------SHVASSLDTD 1081
+ ++ S TD
Sbjct: 548 ILDFLPKIEENLICSKYTD 566
Score = 59.1 bits (142), Expect = 7e-09
Identities = 85/597 (14%), Positives = 177/597 (29%), Gaps = 167/597 (27%)
Query: 527 KDKVMIHLQ-IIADLSYAWKLIDQFTPLMQ----DAIKNEPSLLIKLRALFLKLSTSLEI 581
KD + + + + + D ++ D I + LF L + E
Sbjct: 19 KDILSVFEDAFVDNFDCK-DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE- 76
Query: 582 PLLRINQAESEDLISVSQYYSNELVTYMQHVLQIIPQTMFTLMADITNLQTNVMLEVPTR 641
+ Q E+++ ++ Y L++ ++ Q P ++M + Q + +
Sbjct: 77 ---EMVQKFVEEVLRIN--Y-KFLMSPIKTE-QRQP----SMMTRMYIEQRDRLYNDNQV 125
Query: 642 LDKD---KLKDYAQLDTRFEIAHLTHSISVFTQGILRM----KSTLVGIVCIDPKQLLH- 693
K +L+ Y +L R + L + +V G + K+ + VC+ K
Sbjct: 126 FAKYNVSRLQPYLKL--RQALLELRPAKNVLIDG---VLGSGKTWVALDVCLSYKVQCKM 180
Query: 694 -NGI------KKQLAETILTELNKGLTFNTKSKTNKTDLMTKLGQLAVVMDGHKRSFEYI 746
I ET+L L K L + T+++D + + + R
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 747 QDYVGIYGL----KVWY-EVLN------QVIEETVSSEI-DSLSSTSGCTFVGRLADELV 794
+ Y L V + N +++ T ++ D LS+ + T L +
Sbjct: 241 KPYEN--CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT--TTHISLDHHSM 296
Query: 795 SMTDPKQSMYVENTTAWYNVKTQKEIF----NMKIFSLIIKAIGISGLVGLDNVLGFRIV 850
++T P + K + + + L + + + +++ +
Sbjct: 297 TLT-PDEV---------------KSLLLKYLDCRPQDLPREVLTTNPRR--LSIIA-ESI 337
Query: 851 KNIQSVFSQLFNYSNDKPCQDILAQMS-KELSPNTNPISNPTKLYPQYLSKMNKYLMGVN 909
++ + + + + DK + + S L P K++ LS
Sbjct: 338 RDGLATWDNWKHVNCDK--LTTIIESSLNVLEPAEY-----RKMF-DRLSVFPP------ 383
Query: 910 DSLIQIGQLQILRQLLRHELSSCAQFESKNLHLCLETLDKSLLNDLRLYYSKEGMSLPTD 969
+ I L ++ + LH SL+
Sbjct: 384 SAHIPTILLSLIWFDVIKS---DVMVVVNKLH------KYSLVE--------------KQ 420
Query: 970 NQELMTSICA-YLKWIGQ-DNPY--HKIYVTSRNIPYFPLFLFLYSLSVLSKVTYSSSQD 1025
+E SI + YL+ + +N Y H+ V NIP
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK----------------------- 457
Query: 1026 LFLTKKGYEYCHTDCVVVLVGLHTLFHQFHKDIGEQYLVYLCQYIKSHVASSLDTDR 1082
+ D +QY +I H+ + +R
Sbjct: 458 --------TFDSDD--------------LIPPYLDQYF---YSHIGHHLKNIEHPER 489
Score = 52.2 bits (124), Expect = 1e-06
Identities = 48/332 (14%), Positives = 101/332 (30%), Gaps = 95/332 (28%)
Query: 21 AIIAELLRLKDHIPSIFQQTDVNKQYSDLIIDFSYFSQNETVDNKIEGSQQLQELDEKIR 80
+IIAE +R D + + K + + IE S + E E R
Sbjct: 331 SIIAESIR--DG-LATWDNW---KHV-----------NCDKLTTIIESSLNVLEPAE-YR 372
Query: 81 DTYLEILVRFYVVFENIYKFAINLNQYVENLENNVYIQESIESVFLDEEGCQLMCEALYL 140
+ + ++ + +I + S+ + + +
Sbjct: 373 KMF--------------DRLSV--------FPPSAHIPTILLSL--------IWFDVIK- 401
Query: 141 YGVMLLVTELYVPGAIREKLLVSYYRYSLNKSQNFDEVCQL----FSSSKKGNGYPE--- 193
VM++V +L ++YSL + Q + + K
Sbjct: 402 SDVMVVVNKL--------------HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447
Query: 194 NVFSRIPINENLVNMILGKLRTDDIYHSIVAYPLPQHRSTALANQASMLFVCLYFDTSVL 253
++ I + + L D ++S + + H + LF ++ D L
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH----HLKNIEHPERMTLFRMVFLDFRFL 503
Query: 254 -----HNNTA-NMREVVDKFFPDNWIVSIYMG-ITVQLIDAWEPYRAAKL-ALSNSLETS 305
H++TA N + + Y I +P + A+ + L
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQ---LKFYKPYICDN-----DPKYERLVNAILDFLPKI 555
Query: 306 NVKQYSTFHTDRIIKLTSQTNQLLKDGALTEE 337
+ +TD ++++ +D A+ EE
Sbjct: 556 EENLICSKYTD-LLRIALMA----EDEAIFEE 582
Score = 40.6 bits (94), Expect = 0.003
Identities = 62/461 (13%), Positives = 128/461 (27%), Gaps = 143/461 (31%)
Query: 657 FEIAHLTHS----ISVFTQGILRMKSTLVGIVCIDPKQLLHNGIKKQLAETILTELNKGL 712
FE + +SVF + C D + + + + K+ + I+
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVD------NFDCKDVQDMPKSILSKEEIDHII------- 55
Query: 713 TFNTKSKTNKTDLMTKLGQLAVVMDGHKRSFEYIQDYVGIYGLKVWYEVLNQVIEETVSS 772
+K + T + ++ + +Q +V L++ Y+ L I+
Sbjct: 56 --MSKDAVSGTLRL-----FWTLLSKQEEM---VQKFVE-EVLRINYKFLMSPIKT--EQ 102
Query: 773 EIDSLSSTSGCTFVGRLADELVSMTDPKQSMYVENTTAWYNVKTQKEIFNMK--IFSLI- 829
S+ + RL ++ YNV + ++ + L
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAK-------------YNVSRLQPYLKLRQALLELRP 149
Query: 830 IKAIGISGLVGL-DNVLGFRIVKN--IQSVFS-QLF--NYSNDKPCQDILAQMSK---EL 880
K + I G++G + + + +Q ++F N N + +L + K ++
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 881 SPNTNPISNPTKLYPQYLSKMNKYLMGVNDSLIQIGQLQILRQLLRHELSSCAQFESKNL 940
PN S+ + ++ ++ LR +SK
Sbjct: 210 DPNWTSRSDHSSNIKL--------------------RIHSIQAELRR------LLKSKPY 243
Query: 941 HLCLETLD----KSLLNDLRLYYSKEGMSLPTDNQELMTSICAYLKWIGQDNPYHKIYVT 996
CL L N + C KI +T
Sbjct: 244 ENCLLVLLNVQNAKAWNAF-------------NLS------C-------------KILLT 271
Query: 997 SRNI-----------------PYFPLFLFLYSLSVLSKVTYSSSQDLFLTKKGYEYCHTD 1039
+R + S+L K QDL E T+
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL-----PREVLTTN 326
Query: 1040 CVVV-LVGLHTLFHQFHKDIGEQYLVYLCQYIKSHVASSLD 1079
+ ++ + + C + + + SSL+
Sbjct: 327 PRRLSIIA--ESIRD-GLATWDNWKHVNCDKLTTIIESSLN 364
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.8 bits (147), Expect = 2e-09
Identities = 96/632 (15%), Positives = 199/632 (31%), Gaps = 222/632 (35%)
Query: 10 VTILELVSRGNAIIAELLRLKDHIPSIFQQTDV----NKQYS--DLIIDFSYFSQNETVD 63
+L V + IA L+ + + + T+ ++ + +L+ F + V
Sbjct: 18 HVLL--VPTASFFIASQLQ-EQFNKILPEPTEGFAADDEPTTPAELVGKFLGY-----VS 69
Query: 64 NKIEGSQQLQELDEKIRDTYLEILVRFYVVFENIYKFAINLNQYVENLENNVYIQESIES 123
+ +E S+ Q + ++L FEN Y LE N I +
Sbjct: 70 SLVEPSKVGQ---------FDQVLNLCLTEFENCY------------LEGN-----DIHA 103
Query: 124 VFLDEEGCQLMCEALYLYGVMLLVTELYVPGAIREKLLVSYYRYSLNKSQNFDEVCQ--L 181
+ L+ E ++L+ +Y + + FD+ L
Sbjct: 104 L------------------AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL 145
Query: 182 FSSSKKGN----------GYPENVFSRIPINENLVNMILGKLRTDDIYHSIVAYPLPQHR 231
F + +GN G ++ F E LR D+Y + Y
Sbjct: 146 FRAVGEGNAQLVAIFGGQGNTDDYFE-----E---------LR--DLYQT---YH---VL 183
Query: 232 STALANQASMLFVCLYFDTSVLHNNTANMREVVDKFFPD-----NWI------------- 273
L ++ + +K F W+
Sbjct: 184 VGDLIKFSAETL-----------SELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL 232
Query: 274 ---VSI-YMGITVQLIDAWEPY-RAAKLALSNSLETSNVKQYSTFHTDRII--KLTSQTN 326
+S +G+ QL Y AKL E + + +T H+ ++ ++
Sbjct: 233 SIPISCPLIGVI-QLAH----YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE-- 285
Query: 327 QLLKDGALTEENVLDNTNKILNLARECNVTIRWLVLHTSSNHETISGVAASKKSKQIKDI 386
+ E+ + K + + ++ + +E + ++D
Sbjct: 286 ------TDSWESFFVSVRKAITVL-------FFIGVRC---YEAYPNTSLP--PSILEDS 327
Query: 387 VSNNIN----MSDVFQLILNTSEFELKIKELLKALLEDKQNKWNSCKQECNERLNYLIEL 442
+ NN M L I L + ++D NK NS +++ I L
Sbjct: 328 LENNEGVPSPM--------------LSISNLTQEQVQDYVNKTNSHLPA-GKQVE--ISL 370
Query: 443 FSGAKPL-----PK--VHKNQQLEKWFSEINSHLESLN--FSDEMGSVQKIV---QF--I 488
+GAK L P+ N L K ++ S L+ FS+ K+ +F +
Sbjct: 371 VNGAKNLVVSGPPQSLYGLNLTLRK--AKAPSGLDQSRIPFSER-----KLKFSNRFLPV 423
Query: 489 QALDSVKEFHGLSS-----NAQVEQWIDESI-----KYLNIMVRSV-NVKDKVMIHLQII 537
+ FH S + + + + ++ K + I V + D L+++
Sbjct: 424 AS-----PFH--SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD-----LRVL 471
Query: 538 ADLSYAWKLIDQFT--PL-MQDAIKNEPSLLI 566
+ S + +++D P+ + + + + ++
Sbjct: 472 SG-SISERIVDCIIRLPVKWETTTQFKATHIL 502
Score = 55.8 bits (134), Expect = 8e-08
Identities = 91/519 (17%), Positives = 158/519 (30%), Gaps = 141/519 (27%)
Query: 538 ADLSYAWKLIDQFT-----PLMQDAIKNEPSLLIKLRALFLKLSTSLEIPLLRINQAESE 592
A A +L +QF P A +EP+ +L FL +SL + ++
Sbjct: 25 ASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSL------VEPSKVG 78
Query: 593 DLISVSQYYSNELV-TYMQHVLQIIPQTMFTLMADITNLQTNVMLEVPTRLDKDK--LKD 649
V E Y++ DI L ++ E T L K K +K+
Sbjct: 79 QFDQVLNLCLTEFENCYLEG-------------NDIHALAAKLLQENDTTLVKTKELIKN 125
Query: 650 YAQLDTRFEIAHLTHSISVFTQGILRMKSTLVGIVCIDPKQLLHNGIKKQ-LAETILTEL 708
Y + S S + + + LV I G Q + EL
Sbjct: 126 YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF---------GG---QGNTDDYFEEL 173
Query: 709 NKGLTFNTKSKTNKTDLMT----KLGQLAVVMDGHKRSFEYI---------------QDY 749
+ T DL+ L +L ++ F +DY
Sbjct: 174 RD--LYQT-YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY 230
Query: 750 ----------VGIYGLKVWYEVLNQVIEETVSSEIDSLSSTSGCTFVGRLADELVSMTDP 799
+G+ L Y V +++ T L +G + LV+
Sbjct: 231 LLSIPISCPLIGVIQL-AHYVVTAKLLGFTPGELRSYLKGATGH------SQGLVT---- 279
Query: 800 KQSMYVENTTAWYNVKTQKEIFNMKIFSLIIKAIGISGLVGLDNVLGFRIVKNIQSVFSQ 859
++ + T +W E F F + KAI + +G+ + S+
Sbjct: 280 --AVAIAETDSW-------ESF----FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED 326
Query: 860 LFNYSNDKPC-------------QDILAQMSKELSPNTNPIS----N-PTKL----YPQY 897
+ P QD + + + L P + N L PQ
Sbjct: 327 SLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL-PAGKQVEISLVNGAKNLVVSGPPQS 385
Query: 898 LSKMNKYL------MGVNDSLIQIGQLQILRQL-LRHE-LSSCAQFESKNLHLCLETLDK 949
L +N L G++ S I + R+L + L + F S L + ++K
Sbjct: 386 LYGLNLTLRKAKAPSGLDQSRIPFSE----RKLKFSNRFLPVASPFHSHLLVPASDLINK 441
Query: 950 SLLN--------DLRL--YYSKEGMSLPTDNQELMTSIC 978
L+ D+++ Y + +G L + + I
Sbjct: 442 DLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIV 480
Score = 52.0 bits (124), Expect = 1e-06
Identities = 91/528 (17%), Positives = 167/528 (31%), Gaps = 163/528 (30%)
Query: 655 TR-FEIAH--LTHSISVFTQGILRMKSTLVGIVCIDPKQLLHNGIKKQLAET---ILTEL 708
TR ++H L H + V P QL E IL E
Sbjct: 6 TRPLTLSHGSLEHVLLV-------------------PTASFFIA--SQLQEQFNKILPEP 44
Query: 709 NKGLTFNTKSKTNKTDLMTK-LGQLA-VVMDGHKRSFEYIQDYVGIYGLKVWYEVLNQVI 766
+G + + T +L+ K LG ++ +V F+ + L + L +
Sbjct: 45 TEGFAADDEPTT-PAELVGKFLGYVSSLVEPSKVGQFDQV--------LNL---CLTE-F 91
Query: 767 EETV--SSEIDSLSSTSGCTFVGRLADELVSMTDPKQSMYVENTTAWYNVKTQ-KEIFNM 823
E ++I +L +L E T K ++N + + K F+
Sbjct: 92 ENCYLEGNDIHAL--------AAKLLQE-NDTTLVKTKELIKN---YITARIMAKRPFDK 139
Query: 824 KIFSLIIKAIGISGLVGLDNVL---GFRIVKNIQSVFSQLFN-YSNDKPC-QDILAQMSK 878
K S + +A+G G L + G N F +L + Y D++ ++
Sbjct: 140 KSNSALFRAVG-EGNAQLVAIFGGQG-----NTDDYFEELRDLYQTYHVLVGDLIKFSAE 193
Query: 879 ELSPNTNPISNPTKLYPQYLSKMN-----------KYLMGVNDSLIQIGQLQI------L 921
LS + K++ Q L+ + YL+ + S IG +Q+
Sbjct: 194 TLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTA 253
Query: 922 RQL------LRHELSS---CAQ-------------FES--KNLHLCLETL---------- 947
+ L LR L +Q +ES ++ + L
Sbjct: 254 KLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEA 313
Query: 948 --DKSLLNDLRLYYSKEGMSLPTDNQELMTSICAY-----LKWIGQDNPY----HKIYVT 996
+ SL + + +P+ M SI ++ + N + ++ ++
Sbjct: 314 YPNTSLPPSILEDSLENNEGVPS----PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS 369
Query: 997 SRNIPY------FPLFLFLYSLSV-LSKVTYSSSQD----LFLTKK---GYEY------C 1036
N P LY L++ L K S D F +K +
Sbjct: 370 LVNGAKNLVVSGPP--QSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF 427
Query: 1037 HTDCVVVLVGLHTLFHQFHKDIGEQYLVYLCQYIKSHVASSLD-TDRR 1083
H+ L +KD+ + + + + I+ V + D +D R
Sbjct: 428 HSHL------LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLR 469
Score = 43.9 bits (103), Expect = 3e-04
Identities = 63/326 (19%), Positives = 106/326 (32%), Gaps = 119/326 (36%)
Query: 383 IKDIVSNN-INMSDVFQLILNTSEFELKIKELLKALLEDKQNKWNSCKQECNERLNYLIE 441
I DIV NN +N++ I E +I+E NY
Sbjct: 1661 ILDIVINNPVNLT-----IHFGGEKGKRIRE------------------------NYSAM 1691
Query: 442 LFSGAKPLPKVHKNQQLEKWFSEINSHLESLNFSDEMGSVQKIVQFIQ-ALDSVKEFHGL 500
+F V + EK F EIN H S F E G + QF Q AL L
Sbjct: 1692 IFETI-----VDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA-TQFTQPAL-----T--L 1738
Query: 501 SSNAQVEQWIDESIKYLNIMVRSVNVKDKVMI-H-------LQIIAD-LSYAWKLIDQFT 551
A E + + D H L +AD +S
Sbjct: 1739 MEKAAFEDLKSKGLI----------PADATFAGHSLGEYAALASLADVMS---------- 1778
Query: 552 PLMQDAIKNEPSLLIKLRALFLKLSTSLEIPLLRINQAESEDLI------SVSQYYSNEL 605
++ ++ ++ R + ++ + +P R S + V+ +S E
Sbjct: 1779 --IESLVE-----VVFYRGMTMQ----VAVP--RDELGRSNYGMIAINPGRVAASFSQEA 1825
Query: 606 VTYMQHVLQIIPQTMFTLMADITNL-----Q-----TNVMLEVPTR-LDKDKLKDYAQLD 654
+ Y+ V ++ +T + + +I N Q L+ T L+ KL+
Sbjct: 1826 LQYV--VERVGKRTGWLV--EIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQ------ 1875
Query: 655 TRFEIAHLTHSISVFTQGILRMKSTL 680
+ +I L S+S + ++ L
Sbjct: 1876 -KIDIIELQKSLS-----LEEVEGHL 1895
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.15
Identities = 11/40 (27%), Positives = 14/40 (35%), Gaps = 17/40 (42%)
Query: 559 KNEPSLLIKLRALFLKLSTSLEI------PLLRINQAESE 592
K +K KL SL++ P L I A E
Sbjct: 19 KQA----LK------KLQASLKLYADDSAPALAIK-ATME 47
Score = 33.0 bits (74), Expect = 0.25
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 24/54 (44%)
Query: 454 KNQQLEKWFSEINSHLESLNFSDEMGSVQKIVQFIQALDSVKEFHGLSSNAQVE 507
+ Q L+K L++ S++ + A DS L+ A +E
Sbjct: 18 EKQALKK--------LQA--------SLK-----LYADDSAP---ALAIKATME 47
Score = 29.9 bits (66), Expect = 2.7
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 9/33 (27%)
Query: 535 QIIADLSYAWKLIDQFTPLMQDAIKNEPSLLIK 567
Q + L + KL + D+ P+L IK
Sbjct: 20 QALKKLQASLKL---YAD---DS---APALAIK 43
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.8 bits (74), Expect = 0.31
Identities = 14/75 (18%), Positives = 25/75 (33%), Gaps = 7/75 (9%)
Query: 419 EDKQNKWNSCKQECNERLNYLIELFSGAKPLPKVHKNQQLEKWFSEINSHLESLNFSDEM 478
+ KW ++E +RL L + + + LE+W + +E
Sbjct: 84 PESIRKW---REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKN--KINN 138
Query: 479 GSVQKIVQFIQALDS 493
K F Q D+
Sbjct: 139 RIADK--AFYQQPDA 151
Score = 30.1 bits (67), Expect = 2.6
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 9/68 (13%)
Query: 65 KIEGSQQLQELDEKIRDTYLEILVRFYVVFENIYKFAINLNQYVENLENNVYIQESIESV 124
+ E ++LQELD + E + E + + E +E N +
Sbjct: 91 REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQ------RQSEQVEKNKINNRIADKA 144
Query: 125 FL---DEE 129
F D +
Sbjct: 145 FYQQPDAD 152
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein,
muscle, Z- LINE, actin-binding protein; 2.8A {Homo
sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Length = 476
Score = 33.7 bits (76), Expect = 0.33
Identities = 32/205 (15%), Positives = 74/205 (36%), Gaps = 13/205 (6%)
Query: 456 QQLEKWFSEINSHLESLNFSDEMGSVQKIVQFIQALDSVKEFHGLSSNAQVEQWIDESIK 515
+L +W LE+ M ++QK ++ + + + Q+E +
Sbjct: 21 SELLEWIRRTIPWLENRTPEKTMQAMQKKLEDFRDYRRKHKPPKVQEKCQLEINFNT--- 77
Query: 516 YLNIMVRSVNVKDKVMIHLQIIADLSYAWKLIDQFTPLMQDAIKNEPSLLIKLRALFLKL 575
L +R N + ++++D++ AW+ ++Q ++ + NE L +L L K
Sbjct: 78 -LQTKLRISNRPAFMPSEGKMVSDIAGAWQRLEQAEKGYEEWLLNEIRRLERLEHLAEKF 136
Query: 576 STSLEIPLLRINQAESEDLISVSQYYSNELVTYMQHVLQIIPQTMFTLMADITNLQTNV- 634
E ++ Y S L ++ + + +D+ Q V
Sbjct: 137 RQKAS--THETWAYGKEQILLQKDYESASL-----TEVRALLRKHEAFESDLAAHQDRVE 189
Query: 635 -MLEVPTRLDKDKLKDYAQLDTRFE 658
+ + L++ D ++ R +
Sbjct: 190 QIAAIAQELNELDYHDAVNVNDRCQ 214
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin
repeat structural protein, crosslinking; 2.22A {Homo
sapiens}
Length = 210
Score = 30.7 bits (69), Expect = 1.9
Identities = 13/98 (13%), Positives = 28/98 (28%), Gaps = 6/98 (6%)
Query: 396 VFQLILNTSEFELKIKELLKALLEDKQNKWNSCKQECNERLNYLIELFSGAKPLPKVHKN 455
+ + + + + + L ++ RL L L S V
Sbjct: 61 IERARSDEGQLSPATRGAYRDCLGRLDLQYAKLLNSSKARLRSLESLHS------FVAAA 114
Query: 456 QQLEKWFSEINSHLESLNFSDEMGSVQKIVQFIQALDS 493
+ W +E ++SD ++ + AL
Sbjct: 115 TKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMR 152
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 29.7 bits (67), Expect = 3.8
Identities = 7/46 (15%), Positives = 14/46 (30%), Gaps = 7/46 (15%)
Query: 327 QLLKDGALTEENVLDNTN-------KILNLARECNVTIRWLVLHTS 365
+L G + ++ +TN A+E + V
Sbjct: 70 SILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVP 115
>3u1n_A SAM domain and HD domain-containing protein 1; deoxynucleotide
triphosphohydrolase, hydrolase; 3.10A {Homo sapiens}
Length = 528
Score = 30.1 bits (67), Expect = 4.9
Identities = 8/43 (18%), Positives = 17/43 (39%)
Query: 364 TSSNHETISGVAASKKSKQIKDIVSNNINMSDVFQLILNTSEF 406
S +H A + D + +I + + I++T +F
Sbjct: 1 ASWSHPQFEKGALEVLFQGPGDPIHGHIELHPLLVRIIDTPQF 43
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer,
complex, three-helix bundle, alpha helix repeat, helical
linker, actin capping; 2.80A {Homo sapiens}
Length = 185
Score = 29.1 bits (65), Expect = 5.8
Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 18/119 (15%)
Query: 398 QLILNTSEFELKIKELLKALLEDKQ---NKWNSCKQECNERLNYLIELFSGAKPLPKVHK 454
L+ + +I+E L+ ++ ++ KW + E L + + A
Sbjct: 69 SLLQRQHQASEEIREKLQQVMSRRKEMNEKW-EARWERLRMLLEVCQFSRDA-------- 119
Query: 455 NQQLEKWFSEINSHLESLNFSDEMGSVQKIVQ----FIQALDSVKE-FHGLSSNAQVEQ 508
E W +L S +F + SV+K+++ F ++ S E F L +E
Sbjct: 120 -SVAEAWLIAQEPYLASGDFGHTVDSVEKLIKRHEAFEKSTASWAERFAALEKPTTLEL 177
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of
spectrin, alpha-helical linker region, 3-helix
coiled-coil, structural protein; 2.50A {Gallus gallus}
SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Length = 322
Score = 29.1 bits (65), Expect = 7.2
Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 412 ELLKALLEDKQNKWNSCKQECNERLNYLIELFSGAKPLPKVHKN-QQLEKWFSEINSHLE 470
E ++ L + W KQ R L E + + N ++ E W +E + +
Sbjct: 184 EEIQQRLAQFVDHWKELKQLAAARGQRLEE----SLEYQQFVANVEEEEAWINEKMTLVA 239
Query: 471 SLNFSDEMGSVQKIVQFIQAL 491
S ++ D + ++Q +++ +A
Sbjct: 240 SEDYGDTLAAIQGLLKKHEAF 260
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding,
protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP:
h.1.27.2
Length = 79
Score = 27.3 bits (60), Expect = 7.3
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 572 FLKLSTSLEIPLLRINQAESED 593
F+KLS +L++ L RI QA+S +
Sbjct: 38 FVKLSQTLQVQLERIRQADSLE 59
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal
helicase, DNA repair,, DNA binding protein/DNA complex;
3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2
c.37.1.19 c.37.1.19 PDB: 2p6u_A
Length = 702
Score = 29.4 bits (66), Expect = 7.9
Identities = 21/133 (15%), Positives = 47/133 (35%), Gaps = 15/133 (11%)
Query: 383 IKDIVSNNINMSDVFQLILNTSEF-ELKIKELLKALLEDKQNKWNSCKQECNERLNYLIE 441
+ ++ LI T + L +++ + E+ + L+Y
Sbjct: 497 HDVLSRMELSDIGALHLICRTPDMERLTVRKTDSWVEEEAF--------RLRKELSYYPS 548
Query: 442 LFSGAKP--LPKVHKNQQLEKWFSEINSHLESLNFSDEMGSVQKIVQ----FIQALDSVK 495
FS L +V L+ W E + + G +++IV+ A++ +
Sbjct: 549 DFSVEYDWFLSEVKTALCLKDWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSNAMNRIA 608
Query: 496 EFHGLSSNAQVEQ 508
E G +S + + +
Sbjct: 609 EEVGNTSVSGLTE 621
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 28.9 bits (64), Expect = 8.6
Identities = 7/46 (15%), Positives = 14/46 (30%), Gaps = 7/46 (15%)
Query: 327 QLLKDGALTEENVLDNTN-------KILNLARECNVTIRWLVLHTS 365
+L G + ++ +TN A+E + V
Sbjct: 70 SILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVP 115
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.382
Gapped
Lambda K H
0.267 0.0506 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 15,578,692
Number of extensions: 923009
Number of successful extensions: 1976
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1952
Number of HSP's successfully gapped: 51
Length of query: 1083
Length of database: 6,701,793
Length adjustment: 104
Effective length of query: 979
Effective length of database: 3,798,009
Effective search space: 3718250811
Effective search space used: 3718250811
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.2 bits)