BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7357
(302 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WYT|B Chain B, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Apo Form
pdb|1WYT|D Chain D, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Apo Form
pdb|1WYU|B Chain B, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Holo Form
pdb|1WYU|D Chain D, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Holo Form
pdb|1WYU|F Chain F, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Holo Form
pdb|1WYU|H Chain H, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Holo Form
pdb|1WYV|B Chain B, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Inhibitor-Bound Form
pdb|1WYV|D Chain D, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Inhibitor-Bound Form
pdb|1WYV|F Chain F, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Inhibitor-Bound Form
pdb|1WYV|H Chain H, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Inhibitor-Bound Form
Length = 474
Score = 174 bits (440), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 114/317 (35%), Positives = 163/317 (51%), Gaps = 42/317 (13%)
Query: 17 LTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQA 76
++HP+ A+G +L+ EL L +TG D I+ +P +GA GE G+ I+ YH+
Sbjct: 90 FADLHPYQDPRTAQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHED 149
Query: 77 Q-DAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSC 135
+ + R V L+P SAHG+NPA+A MAG V + +G +D L+ ++ + ++
Sbjct: 150 RGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSGPEGEVDLEALKRELGPH---VAA 206
Query: 136 LMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHK 195
LM+T P+T G+FE I ++ L E G Q+Y DGAN+NA +G RPGD G DV HLNLHK
Sbjct: 207 LMLTNPNTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMGWARPGDMGFDVVHLNLHK 266
Query: 196 TFCIXXXXXXXXXXXXXVKSHLAPFLPVHPLSS-------ID----SSIGAVSAAHYGSA 244
TF + VK+HLAP+LPV PL +D SIG V + YG+
Sbjct: 267 TFTVPHGGGGPGSGPVGVKAHLAPYLPV-PLVERGEEGFYLDFDRPKSIGRVR-SFYGNF 324
Query: 245 SILPISWAYIRRL---------------ESHYKTL-----FRSSRSGLVAHEFVIDVRDF 284
L +WAYIR L + K L +R G HEFV
Sbjct: 325 LALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEKGYRVPYDGPSMHEFVA----- 379
Query: 285 KKSANIEAVDIAKRLMD 301
+ A+D+AK L++
Sbjct: 380 QPPEGFRALDLAKGLLE 396
>pdb|1JG8|A Chain A, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1JG8|B Chain B, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1JG8|C Chain C, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1JG8|D Chain D, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1M6S|A Chain A, Crystal Structure Of Threonine Aldolase
pdb|1M6S|B Chain B, Crystal Structure Of Threonine Aldolase
pdb|1M6S|C Chain C, Crystal Structure Of Threonine Aldolase
pdb|1M6S|D Chain D, Crystal Structure Of Threonine Aldolase
Length = 347
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 71/166 (42%), Gaps = 21/166 (12%)
Query: 27 DQARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCL 86
D G + I ELE E G + F P SG G +I + Q D +
Sbjct: 31 DDVYGEDPTINELERLAAETFGKEAALFVP-SGTMGNQV---SIMAHTQRGDE-----VI 81
Query: 87 IPVSAH---GTNPASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKN-----KETLSCLMI 138
+ +H A A ++G+ PV K+G +D D+ ++ + +L +
Sbjct: 82 LEADSHIFWYEVGAMAVLSGVMPHPVP-GKNGAMDPDDVRKAIRPRNIHFPRTSLIAIEN 140
Query: 139 TYPSTFG--VFEENITDVCELIHEHGGQVYLDGANM-NAQVGLCRP 181
T+ + G V ENI ++C + EHG V++DGA + NA + P
Sbjct: 141 THNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVP 186
>pdb|1LW4|A Chain A, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity)
In Complex With L-Allo-Threonine
pdb|1LW4|B Chain B, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity)
In Complex With L-Allo-Threonine
pdb|1LW4|C Chain C, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity)
In Complex With L-Allo-Threonine
pdb|1LW4|D Chain D, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity)
In Complex With L-Allo-Threonine
pdb|1LW5|A Chain A, X-ray Structure Of L-threonine Aldolase (low-specificity)
In Complex With Glycine
pdb|1LW5|B Chain B, X-ray Structure Of L-threonine Aldolase (low-specificity)
In Complex With Glycine
pdb|1LW5|C Chain C, X-ray Structure Of L-threonine Aldolase (low-specificity)
In Complex With Glycine
pdb|1LW5|D Chain D, X-ray Structure Of L-threonine Aldolase (low-specificity)
In Complex With Glycine
Length = 347
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 21/166 (12%)
Query: 27 DQARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCL 86
D G + I ELE E G + F P SG G +I + Q D +
Sbjct: 31 DDVYGEDPTINELERLAAETFGKEAALFVP-SGTXGNQV---SIXAHTQRGDE-----VI 81
Query: 87 IPVSAH---GTNPASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKN-----KETLSCLMI 138
+ +H A A ++G+ PV K+G D D+ ++ + +L +
Sbjct: 82 LEADSHIFWYEVGAXAVLSGVXPHPVP-GKNGAXDPDDVRKAIRPRNIHFPRTSLIAIEN 140
Query: 139 TYPSTFG--VFEENITDVCELIHEHGGQVYLDGANM-NAQVGLCRP 181
T+ + G V ENI ++C + EHG V++DGA + NA + P
Sbjct: 141 THNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVP 186
>pdb|2FM1|A Chain A, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
pdb|2FM1|B Chain B, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
pdb|2FM1|C Chain C, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
pdb|2FM1|D Chain D, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
Length = 355
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 71/166 (42%), Gaps = 21/166 (12%)
Query: 27 DQARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCL 86
D G + I ELE E G + F P SG G +I + Q D +
Sbjct: 39 DDVYGEDPTINELERLAAETFGKEAALFVP-SGTMGNQV---SIMAHTQRGDE-----VI 89
Query: 87 IPVSAH---GTNPASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKN-----KETLSCLMI 138
+ +H A A ++G+ PV K+G +D D+ ++ + +L +
Sbjct: 90 LEADSHIFWYEVGAMAVLSGVMPHPVP-GKNGAMDPDDVRKAIRPRNIHFPRTSLIAIEN 148
Query: 139 TYPSTFG--VFEENITDVCELIHEHGGQVYLDGANM-NAQVGLCRP 181
T+ + G V ENI ++C + EHG V++DGA + NA + P
Sbjct: 149 THNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVP 194
>pdb|1I29|A Chain A, Crystal Structure Of Csdb Complexed With
L-Propargylglycine
Length = 406
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 92 HGTNPASAQM----AGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVF 147
H N QM G + + + DGT+ L T E L IT+ S
Sbjct: 123 HHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFD---EKTRLLAITHVSNVLGT 179
Query: 148 EENITDVCELIHEHGGQVYLDGA 170
E + ++ L H+HG +V +DGA
Sbjct: 180 ENPLAEMITLAHQHGAKVLVDGA 202
>pdb|1KMJ|A Chain A, E. Coli NifsCSDB PROTEIN AT 2.0A WITH THE CYSTEINE
PERSULFIDE Intermediate (Residue Css).
pdb|1KMK|A Chain A, E. Coli NifsCSDB PROTEIN AT 2.20A WITH THE CYSTEINE
PERSELENIDE Intermediate (Residue Csz)
Length = 406
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 92 HGTNPASAQM----AGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVF 147
H N QM G + + + DGT+ L T E L IT+ S
Sbjct: 123 HHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFD---EKTRLLAITHVSNVLGT 179
Query: 148 EENITDVCELIHEHGGQVYLDGA 170
E + ++ L H+HG +V +DGA
Sbjct: 180 ENPLAEMITLAHQHGAKVLVDGA 202
>pdb|1JF9|A Chain A, Crystal Structure Of Selenocysteine Lyase
Length = 408
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 92 HGTNPASAQM----AGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVF 147
H N QM G + + + DGT+ L T E L IT+ S
Sbjct: 125 HHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFD---EKTRLLAITHVSNVLGT 181
Query: 148 EENITDVCELIHEHGGQVYLDGA 170
E + ++ L H+HG +V +DGA
Sbjct: 182 ENPLAEMITLAHQHGAKVLVDGA 204
>pdb|1DFO|A Chain A, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
pdb|1DFO|B Chain B, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
pdb|1DFO|C Chain C, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
pdb|1DFO|D Chain D, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
Length = 417
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 75/165 (45%), Gaps = 21/165 (12%)
Query: 32 YEQLIGELETDLC-EITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVS 90
Y ++ +L D E+ G D + QP+SG+Q +A A+ + L
Sbjct: 70 YVDIVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTAL--------LEPGDTVLGMNL 121
Query: 91 AHG---TNPASAQMAG--MSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFG 145
AHG T+ + +G ++ P + G ID++DLE + K++K + ++ + + G
Sbjct: 122 AHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQAKEHKPKM--IIGGFSAYSG 179
Query: 146 VFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDVSH 190
V + + E+ G +++D A++ GL G Y + V H
Sbjct: 180 VVD--WAKMREIADSIGAYLFVDMAHV---AGLVAAGVYPNPVPH 219
>pdb|1EQB|A Chain A, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
pdb|1EQB|B Chain B, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
pdb|1EQB|C Chain C, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
pdb|1EQB|D Chain D, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
Length = 417
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 72/160 (45%), Gaps = 11/160 (6%)
Query: 32 YEQLIGELETDLC-EITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVS 90
Y ++ +L D E+ G D + QP+SG+Q +A A+ N+
Sbjct: 70 YVDIVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTAL--LEPGDTVLGMNLAHGGHL 127
Query: 91 AHGTNPASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEEN 150
HG+ P + ++ P + G ID++DLE + K++K + ++ + + GV +
Sbjct: 128 THGS-PVNFSGKLYNIVPYGIDATGHIDYADLEKQAKEHKPKM--IIGGFSAYSGVVD-- 182
Query: 151 ITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDVSH 190
+ E+ G +++D A++ GL G Y + V H
Sbjct: 183 WAKMREIADSIGAYLFVDMAHV---AGLVAAGVYPNPVPH 219
>pdb|3G8M|A Chain A, Serine Hydroxymethyltransferase Y55f Mutant
Length = 417
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 72/160 (45%), Gaps = 11/160 (6%)
Query: 32 YEQLIGELETDLC-EITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVS 90
Y ++ +L D E+ G D + QP+SG+Q +A A+ N+
Sbjct: 70 YVDIVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTAL--LEPGDTVLGMNLAHGGHL 127
Query: 91 AHGTNPASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEEN 150
HG+ P + ++ P + G ID++DLE + K++K + ++ + + GV +
Sbjct: 128 THGS-PVNFSGKLYNIVPYGIDATGHIDYADLEKQAKEHKPKM--IIGGFSAYSGVVD-- 182
Query: 151 ITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDVSH 190
+ E+ G +++D A++ GL G Y + V H
Sbjct: 183 WAKMREIADSIGAYLFVDMAHV---AGLVAAGVYPNPVPH 219
>pdb|1C0N|A Chain A, Csdb Protein, Nifs Homologue
Length = 406
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 103 GMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHG 162
G + + + DGT+ L T L+ IT+ S E + ++ L H+HG
Sbjct: 138 GAELRVIPLNPDGTLQLETLPTLFDAATRLLA---ITHVSNVLGTENPLAEMITLAHQHG 194
Query: 163 GQVYLDGA 170
+V +DGA
Sbjct: 195 AKVLVDGA 202
>pdb|2ZB5|A Chain A, Crystal Structure Of The Measles Virus Hemagglutinin
(Complex-Sugar- Type)
pdb|2ZB6|A Chain A, Crystal Structure Of The Measles Virus Hemagglutinin
(Oligo-Sugar Type)
pdb|3ALZ|A Chain A, Crystal Structure Of The Measles Virus Hemagglutinin Bound
To Its Cellular Receptor Slam (Form I)
Length = 481
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 70 IQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGT 116
++C+ Q R+ C++ S G + + M GM V R+DGT
Sbjct: 423 VECFTWDQKLWCRHFCVLADSESGGHITHSGMVGMGVSCTVTREDGT 469
>pdb|3PJ0|A Chain A, Crystal Structure Of A Putative L-Allo-Threonine Aldolase
(Lmo0305) From Listeria Monocytogenes Egd-E At 1.80 A
Resolution
pdb|3PJ0|B Chain B, Crystal Structure Of A Putative L-Allo-Threonine Aldolase
(Lmo0305) From Listeria Monocytogenes Egd-E At 1.80 A
Resolution
pdb|3PJ0|C Chain C, Crystal Structure Of A Putative L-Allo-Threonine Aldolase
(Lmo0305) From Listeria Monocytogenes Egd-E At 1.80 A
Resolution
pdb|3PJ0|D Chain D, Crystal Structure Of A Putative L-Allo-Threonine Aldolase
(Lmo0305) From Listeria Monocytogenes Egd-E At 1.80 A
Resolution
Length = 359
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 57/143 (39%), Gaps = 15/143 (10%)
Query: 35 LIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGT 94
+I + ET + +I G F P SG + LR A +R V P+S
Sbjct: 49 VIEDFETKIAKILGKQSAVFFP-SGTXAQQIALRI-----WADRKENRRVAYHPLSHLEI 102
Query: 95 NPASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPS-----TFGVFEE 149
+ + P+ + GT + +K +E +S ++I P FEE
Sbjct: 103 HEQDGLKELQQITPLLL---GTANQLLTIDDIKSLREPVSSVLIELPQREIGGQLPAFEE 159
Query: 150 NITDVCELIHEHGGQVYLDGANM 172
+ + E HE G ++LDGA +
Sbjct: 160 -LEKISEYCHEQGISLHLDGARL 181
>pdb|2RKC|A Chain A, Crystal Structure Of The Measles Virus Hemagglutinin
Length = 462
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 70 IQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGT 116
++C+ Q R+ C++ S G + + M GM V R+DGT
Sbjct: 413 VECFTWDQKLWCRHFCVLADSESGGHITHSGMVGMGVSCTVTREDGT 459
>pdb|3INB|A Chain A, Structure Of The Measles Virus Hemagglutinin Bound To The
Cd46 Receptor
pdb|3INB|B Chain B, Structure Of The Measles Virus Hemagglutinin Bound To The
Cd46 Receptor
Length = 466
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 70 IQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGT 116
++C+ Q R+ C++ S G + + M GM V R+DGT
Sbjct: 417 VECFTWDQKLWCRHFCVLADSESGGHITHSGMVGMGVSCTVTREDGT 463
>pdb|3MAF|A Chain A, Crystal Structure Of Stspl (Asymmetric Form)
Length = 518
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 85 CLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTF 144
++PVSAH +AQ G+ + + D D + + + N ++ YP
Sbjct: 199 AVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYP--H 256
Query: 145 GVFEENITDVCELIHEHGGQVYLD 168
GV + I ++ L EHG ++D
Sbjct: 257 GVVDP-IPEIAALAAEHGIGCHVD 279
>pdb|3MAD|A Chain A, Crystal Structure Of Stspl (Symmetric Form)
pdb|3MAD|B Chain B, Crystal Structure Of Stspl (Symmetric Form)
Length = 514
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 85 CLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTF 144
++PVSAH +AQ G+ + + D D + + + N ++ YP
Sbjct: 195 AVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPH-- 252
Query: 145 GVFEENITDVCELIHEHGGQVYLD 168
GV + I ++ L EHG ++D
Sbjct: 253 GVVDP-IPEIAALAAEHGIGCHVD 275
>pdb|3MAF|B Chain B, Crystal Structure Of Stspl (Asymmetric Form)
Length = 518
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 85 CLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTF 144
++PVSAH +AQ G+ + + D D + + + N ++ YP
Sbjct: 199 AVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYP--H 256
Query: 145 GVFEENITDVCELIHEHGGQVYLD 168
GV + I ++ L EHG ++D
Sbjct: 257 GVVDP-IPEIAALAAEHGIGCHVD 279
>pdb|3MAU|A Chain A, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|B Chain B, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|C Chain C, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|D Chain D, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
Length = 514
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 85 CLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTF 144
++PVSAH +AQ G+ + + D D + + + N ++ YP
Sbjct: 195 AVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYP--H 252
Query: 145 GVFEENITDVCELIHEHGGQVYLD 168
GV + I ++ L EHG ++D
Sbjct: 253 GVVDP-IPEIAALAAEHGIGCHVD 275
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,717,644
Number of Sequences: 62578
Number of extensions: 342194
Number of successful extensions: 807
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 790
Number of HSP's gapped (non-prelim): 22
length of query: 302
length of database: 14,973,337
effective HSP length: 98
effective length of query: 204
effective length of database: 8,840,693
effective search space: 1803501372
effective search space used: 1803501372
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)