Query psy7357
Match_columns 302
No_of_seqs 300 out of 2474
Neff 8.1
Searched_HMMs 46136
Date Sat Aug 17 00:41:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7357.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7357hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1003 GcvP Glycine cleavage 100.0 2.3E-71 4.9E-76 508.2 23.9 296 1-302 76-404 (496)
2 KOG2040|consensus 100.0 1.2E-60 2.6E-65 452.5 20.3 301 1-302 549-877 (1001)
3 TIGR00461 gcvP glycine dehydro 100.0 3E-59 6.4E-64 473.2 27.7 301 1-302 497-826 (939)
4 PLN02414 glycine dehydrogenase 100.0 2.2E-56 4.8E-61 457.0 30.0 301 1-302 535-866 (993)
5 PRK12566 glycine dehydrogenase 100.0 8E-56 1.7E-60 445.8 29.0 301 1-302 510-835 (954)
6 PRK05367 glycine dehydrogenase 100.0 1.6E-54 3.5E-59 444.8 28.3 301 1-302 509-834 (954)
7 PF02347 GDC-P: Glycine cleava 100.0 2.6E-54 5.6E-59 406.2 18.5 268 3-300 78-395 (429)
8 COG0403 GcvP Glycine cleavage 100.0 3.6E-50 7.9E-55 368.9 19.5 259 3-282 88-398 (450)
9 PRK04366 glycine dehydrogenase 100.0 7.2E-46 1.6E-50 360.7 27.2 294 1-302 80-405 (481)
10 PRK12566 glycine dehydrogenase 100.0 6E-47 1.3E-51 381.7 19.3 251 3-282 92-393 (954)
11 TIGR00461 gcvP glycine dehydro 100.0 7E-46 1.5E-50 375.9 22.2 267 1-301 76-392 (939)
12 PRK05367 glycine dehydrogenase 100.0 5.3E-41 1.2E-45 345.1 21.1 266 3-302 89-404 (954)
13 PLN02414 glycine dehydrogenase 100.0 1.1E-38 2.3E-43 327.1 19.5 264 4-301 117-430 (993)
14 COG0112 GlyA Glycine/serine hy 100.0 3.8E-32 8.2E-37 248.3 18.6 246 27-300 62-336 (413)
15 PRK00451 glycine dehydrogenase 100.0 1.9E-31 4.2E-36 257.5 23.3 211 2-227 80-296 (447)
16 cd00613 GDC-P Glycine cleavage 100.0 5.3E-28 1.1E-32 229.6 24.7 197 16-224 47-249 (398)
17 PF00464 SHMT: Serine hydroxym 100.0 3.8E-29 8.2E-34 235.0 13.9 244 29-300 57-352 (399)
18 PLN02271 serine hydroxymethylt 100.0 4.1E-27 8.9E-32 227.0 23.6 257 16-300 171-487 (586)
19 KOG2040|consensus 99.9 2.7E-27 5.7E-32 225.9 13.7 202 4-228 132-340 (1001)
20 COG0520 csdA Selenocysteine ly 99.9 1.9E-24 4.2E-29 205.5 25.3 185 28-227 60-251 (405)
21 PRK13580 serine hydroxymethylt 99.9 1.2E-23 2.5E-28 202.1 20.4 251 29-301 86-392 (493)
22 COG1104 NifS Cysteine sulfinat 99.9 4.9E-24 1.1E-28 197.6 14.6 178 31-222 41-226 (386)
23 PLN02651 cysteine desulfurase 99.9 4.1E-21 8.8E-26 180.8 26.8 182 30-226 39-225 (364)
24 PRK09331 Sep-tRNA:Cys-tRNA syn 99.9 4.3E-21 9.2E-26 182.3 23.1 176 30-221 59-241 (387)
25 KOG2467|consensus 99.9 2.6E-21 5.7E-26 175.1 18.5 244 25-299 73-372 (477)
26 PLN03226 serine hydroxymethylt 99.9 1.2E-20 2.6E-25 183.1 23.2 245 27-300 70-366 (475)
27 TIGR01976 am_tr_V_VC1184 cyste 99.9 1.7E-20 3.6E-25 178.2 23.5 177 29-222 55-238 (397)
28 cd06453 SufS_like Cysteine des 99.9 2.3E-20 4.9E-25 175.8 23.8 179 29-223 38-223 (373)
29 PTZ00094 serine hydroxymethylt 99.9 2.7E-20 5.8E-25 180.3 23.3 240 34-301 79-356 (452)
30 TIGR03235 DNA_S_dndA cysteine 99.9 1.3E-19 2.7E-24 169.8 26.2 172 32-218 40-217 (353)
31 PF00266 Aminotran_5: Aminotra 99.9 2.9E-20 6.2E-25 175.4 21.8 179 27-221 36-221 (371)
32 TIGR01979 sufS cysteine desulf 99.9 1.1E-19 2.5E-24 173.0 26.1 176 32-222 60-242 (403)
33 PRK09295 bifunctional cysteine 99.9 8.4E-20 1.8E-24 174.3 24.5 180 30-224 63-249 (406)
34 COG0075 Serine-pyruvate aminot 99.9 6E-21 1.3E-25 178.0 16.1 181 28-224 32-217 (383)
35 TIGR03392 FeS_syn_CsdA cystein 99.9 7.7E-20 1.7E-24 174.0 24.0 177 32-223 58-241 (398)
36 PRK10874 cysteine sulfinate de 99.9 1E-19 2.2E-24 173.3 24.2 179 30-223 59-244 (401)
37 cd06451 AGAT_like Alanine-glyo 99.9 5E-20 1.1E-24 172.4 21.4 176 30-222 28-208 (356)
38 PLN02409 serine--glyoxylate am 99.9 1E-20 2.2E-25 180.5 15.7 178 29-221 37-222 (401)
39 PRK02769 histidine decarboxyla 99.9 3.7E-20 8.1E-25 175.2 19.3 188 21-221 52-252 (380)
40 PLN02855 Bifunctional selenocy 99.8 5.8E-19 1.3E-23 169.5 25.3 178 32-224 74-258 (424)
41 cd00615 Orn_deC_like Ornithine 99.8 3.8E-20 8.2E-25 169.5 15.0 167 34-216 59-236 (294)
42 COG0436 Aspartate/tyrosine/aro 99.8 2.5E-20 5.3E-25 177.2 14.0 179 29-222 64-260 (393)
43 KOG1549|consensus 99.8 2.2E-20 4.7E-25 174.2 13.2 173 30-215 81-257 (428)
44 KOG0257|consensus 99.8 1.7E-20 3.6E-25 173.1 12.0 187 11-220 56-266 (420)
45 PLN03032 serine decarboxylase; 99.8 2.5E-19 5.5E-24 168.7 20.0 180 30-221 62-255 (374)
46 PRK02948 cysteine desulfurase; 99.8 2.8E-18 6.1E-23 162.3 26.9 172 31-217 40-216 (381)
47 TIGR02006 IscS cysteine desulf 99.8 3.4E-19 7.3E-24 170.0 19.8 174 33-221 46-224 (402)
48 cd06452 SepCysS Sep-tRNA:Cys-t 99.8 1.4E-19 3.1E-24 170.1 16.7 172 34-221 44-222 (361)
49 TIGR02326 transamin_PhnW 2-ami 99.8 1.9E-19 4E-24 169.3 17.2 175 31-221 32-212 (363)
50 TIGR03402 FeS_nifS cysteine de 99.8 3.1E-19 6.8E-24 168.7 18.6 172 30-217 38-214 (379)
51 TIGR01437 selA_rel uncharacter 99.8 1.1E-18 2.4E-23 164.4 22.3 167 31-221 42-229 (363)
52 cd00378 SHMT Serine-glycine hy 99.8 1.1E-18 2.3E-23 166.2 21.6 165 38-221 69-245 (402)
53 TIGR01977 am_tr_V_EF2568 cyste 99.8 4.2E-19 9.1E-24 167.3 18.6 170 30-217 40-216 (376)
54 TIGR01788 Glu-decarb-GAD gluta 99.8 7.7E-18 1.7E-22 161.6 27.5 258 29-301 75-383 (431)
55 TIGR02539 SepCysS Sep-tRNA:Cys 99.8 3.7E-19 7.9E-24 168.1 18.1 179 29-223 46-231 (370)
56 TIGR03403 nifS_epsilon cystein 99.8 5.4E-18 1.2E-22 160.5 25.8 170 34-217 42-218 (382)
57 cd06450 DOPA_deC_like DOPA dec 99.8 7.8E-19 1.7E-23 163.5 19.1 180 29-214 33-230 (345)
58 PRK13479 2-aminoethylphosphona 99.8 5E-19 1.1E-23 166.6 17.5 177 31-223 34-216 (368)
59 PRK14012 cysteine desulfurase; 99.8 1.1E-18 2.3E-23 166.6 18.9 173 33-220 48-225 (404)
60 PRK13520 L-tyrosine decarboxyl 99.8 1.1E-17 2.3E-22 157.3 24.2 180 29-221 54-242 (371)
61 PRK00011 glyA serine hydroxyme 99.8 3.2E-18 6.9E-23 163.9 20.6 164 39-221 76-249 (416)
62 cd01494 AAT_I Aspartate aminot 99.8 5.3E-18 1.1E-22 140.7 17.3 161 36-214 2-170 (170)
63 TIGR03812 tyr_de_CO2_Arch tyro 99.8 3.5E-17 7.6E-22 154.0 24.9 183 29-221 54-247 (373)
64 KOG2862|consensus 99.8 6.2E-18 1.3E-22 150.6 17.9 181 29-226 45-231 (385)
65 TIGR03301 PhnW-AepZ 2-aminoeth 99.8 3.6E-18 7.9E-23 159.2 16.5 176 31-222 28-209 (355)
66 PRK11658 UDP-4-amino-4-deoxy-L 99.8 2.9E-17 6.3E-22 155.7 22.5 167 35-221 34-203 (379)
67 PRK06234 methionine gamma-lyas 99.8 5E-18 1.1E-22 162.0 16.7 163 35-221 65-235 (400)
68 PRK07504 O-succinylhomoserine 99.8 7.8E-18 1.7E-22 160.5 17.4 160 35-218 66-231 (398)
69 cd00616 AHBA_syn 3-amino-5-hyd 99.8 6.1E-17 1.3E-21 151.0 22.3 244 34-301 18-291 (352)
70 PRK13238 tnaA tryptophanase/L- 99.8 4.2E-17 9.1E-22 158.0 21.7 245 36-301 80-375 (460)
71 PRK13034 serine hydroxymethylt 99.8 3.4E-17 7.3E-22 157.1 20.9 246 28-301 65-339 (416)
72 PRK05968 hypothetical protein; 99.8 1.5E-17 3.3E-22 158.1 18.2 166 33-222 62-232 (389)
73 TIGR01328 met_gam_lyase methio 99.8 8.4E-18 1.8E-22 160.0 16.2 166 34-222 59-229 (391)
74 COG0076 GadB Glutamate decarbo 99.8 1.7E-16 3.8E-21 153.0 24.8 181 27-216 94-292 (460)
75 PRK07503 methionine gamma-lyas 99.8 8.8E-18 1.9E-22 160.4 15.7 166 34-222 65-235 (403)
76 PRK07681 aspartate aminotransf 99.8 7.6E-17 1.6E-21 153.7 21.7 178 30-222 69-262 (399)
77 TIGR01329 cysta_beta_ly_E cyst 99.8 3.5E-17 7.6E-22 155.1 19.1 164 34-221 47-216 (378)
78 PRK05957 aspartate aminotransf 99.8 1.5E-17 3.3E-22 158.0 16.3 180 29-223 64-257 (389)
79 PRK08134 O-acetylhomoserine am 99.8 2.7E-17 5.8E-22 158.2 18.0 146 34-199 64-214 (433)
80 PRK08133 O-succinylhomoserine 99.8 1.4E-17 3.1E-22 158.3 16.0 163 34-220 61-229 (390)
81 TIGR01325 O_suc_HS_sulf O-succ 99.8 2.5E-17 5.3E-22 156.2 16.6 164 34-221 54-223 (380)
82 TIGR01326 OAH_OAS_sulfhy OAH/O 99.8 5.1E-17 1.1E-21 155.9 19.0 158 34-215 57-219 (418)
83 PRK14807 histidinol-phosphate 99.8 6.6E-17 1.4E-21 151.5 19.3 172 37-222 62-236 (351)
84 PRK05613 O-acetylhomoserine am 99.8 3.4E-17 7.4E-22 157.5 17.5 151 29-198 64-219 (437)
85 PRK07810 O-succinylhomoserine 99.8 5.2E-17 1.1E-21 155.0 18.7 161 34-218 70-236 (403)
86 PRK06207 aspartate aminotransf 99.8 2.3E-17 5E-22 157.7 16.2 179 29-222 77-274 (405)
87 TIGR03540 DapC_direct LL-diami 99.8 9.5E-17 2.1E-21 152.0 20.1 179 29-222 66-260 (383)
88 PRK08114 cystathionine beta-ly 99.7 1.8E-17 4E-22 157.1 15.0 164 33-219 61-231 (395)
89 TIGR01324 cysta_beta_ly_B cyst 99.7 1.9E-17 4.2E-22 156.6 15.2 165 34-221 50-219 (377)
90 cd00614 CGS_like CGS_like: Cys 99.7 2.4E-17 5.2E-22 155.7 15.7 169 31-222 37-211 (369)
91 PLN02263 serine decarboxylase 99.7 1.1E-16 2.5E-21 153.6 20.0 176 31-218 130-319 (470)
92 TIGR01141 hisC histidinol-phos 99.7 4.2E-17 9.1E-22 152.2 16.7 169 37-222 57-233 (346)
93 PRK08776 cystathionine gamma-s 99.7 9.2E-17 2E-21 153.4 19.3 169 30-221 56-230 (405)
94 COG0399 WecE Predicted pyridox 99.7 3.5E-16 7.6E-21 146.2 22.5 242 34-300 34-306 (374)
95 PRK09028 cystathionine beta-ly 99.7 2.3E-17 4.9E-22 156.7 14.7 164 35-221 62-230 (394)
96 PRK08064 cystathionine beta-ly 99.7 6.5E-17 1.4E-21 153.8 17.9 169 29-221 49-223 (390)
97 PRK05939 hypothetical protein; 99.7 8.3E-17 1.8E-21 153.3 18.6 157 34-214 47-207 (397)
98 PF01276 OKR_DC_1: Orn/Lys/Arg 99.7 7.5E-18 1.6E-22 159.5 11.3 168 35-217 67-257 (417)
99 PRK12414 putative aminotransfe 99.7 3.5E-17 7.7E-22 155.2 16.0 184 21-222 60-258 (384)
100 PRK07811 cystathionine gamma-s 99.7 8.5E-17 1.8E-21 152.9 18.6 165 34-221 61-231 (388)
101 PRK06225 aspartate aminotransf 99.7 1.5E-16 3.2E-21 150.6 20.1 173 36-223 68-249 (380)
102 TIGR01814 kynureninase kynuren 99.7 6.4E-17 1.4E-21 154.6 17.5 167 34-215 71-247 (406)
103 cd06502 TA_like Low-specificit 99.7 1.1E-17 2.4E-22 155.2 11.8 172 34-222 32-217 (338)
104 PRK06108 aspartate aminotransf 99.7 3.5E-17 7.5E-22 154.6 15.4 179 29-222 60-255 (382)
105 PRK09276 LL-diaminopimelate am 99.7 2E-16 4.3E-21 149.9 20.3 179 29-222 68-262 (385)
106 PLN00175 aminotransferase fami 99.7 4.2E-17 9.1E-22 156.3 15.7 183 21-221 85-281 (413)
107 PRK05994 O-acetylhomoserine am 99.7 1.5E-16 3.3E-21 153.0 19.6 156 35-213 64-224 (427)
108 PRK06767 methionine gamma-lyas 99.7 5.7E-17 1.2E-21 154.1 16.3 163 35-220 62-229 (386)
109 PRK08861 cystathionine gamma-s 99.7 1.2E-16 2.7E-21 151.6 18.3 165 34-221 53-223 (388)
110 COG0079 HisC Histidinol-phosph 99.7 2.4E-16 5.2E-21 147.8 20.0 172 36-223 59-236 (356)
111 PRK09105 putative aminotransfe 99.7 1.5E-16 3.3E-21 150.3 18.6 168 36-221 80-255 (370)
112 TIGR00474 selA seryl-tRNA(sec) 99.7 7.3E-17 1.6E-21 155.6 16.7 170 34-225 122-312 (454)
113 PRK06176 cystathionine gamma-s 99.7 1.4E-16 2.9E-21 151.1 18.3 164 34-221 50-219 (380)
114 PF01041 DegT_DnrJ_EryC1: DegT 99.7 2.9E-16 6.3E-21 148.0 20.4 244 34-301 25-301 (363)
115 PRK08248 O-acetylhomoserine am 99.7 1.7E-16 3.7E-21 152.6 19.1 147 34-200 64-215 (431)
116 PRK05942 aspartate aminotransf 99.7 6.1E-17 1.3E-21 154.1 15.8 184 21-222 67-266 (394)
117 PRK05764 aspartate aminotransf 99.7 8.3E-16 1.8E-20 145.9 23.3 179 29-222 67-261 (393)
118 PLN02721 threonine aldolase 99.7 4.5E-16 9.8E-21 145.2 20.9 170 35-220 41-227 (353)
119 PLN02242 methionine gamma-lyas 99.7 5E-17 1.1E-21 155.8 14.7 166 32-222 74-247 (418)
120 cd06454 KBL_like KBL_like; thi 99.7 4.3E-17 9.3E-22 151.7 13.9 171 29-221 41-221 (349)
121 PRK07324 transaminase; Validat 99.7 5E-17 1.1E-21 153.7 14.4 175 29-222 61-245 (373)
122 PRK07050 cystathionine beta-ly 99.7 2.1E-16 4.7E-21 150.4 18.7 165 34-221 65-235 (394)
123 PRK09082 methionine aminotrans 99.7 4.9E-17 1.1E-21 154.3 14.3 182 21-221 61-258 (386)
124 PRK00950 histidinol-phosphate 99.7 1.1E-16 2.4E-21 150.2 16.5 170 37-221 72-245 (361)
125 PRK08249 cystathionine gamma-s 99.7 9.2E-17 2E-21 153.1 15.6 165 34-221 64-233 (398)
126 PRK08912 hypothetical protein; 99.7 9.8E-17 2.1E-21 152.2 15.6 178 29-221 62-254 (387)
127 PLN02509 cystathionine beta-ly 99.7 2.8E-16 6.1E-21 151.9 19.0 159 34-216 133-296 (464)
128 PLN03026 histidinol-phosphate 99.7 3.1E-16 6.6E-21 148.7 18.5 171 36-221 88-262 (380)
129 PRK08960 hypothetical protein; 99.7 1.5E-16 3.2E-21 151.0 16.3 178 29-221 68-256 (387)
130 PRK08574 cystathionine gamma-s 99.7 2.9E-16 6.2E-21 149.1 18.2 164 34-221 53-222 (385)
131 TIGR03799 NOD_PanD_pyr putativ 99.7 3.3E-16 7.1E-21 153.5 19.0 183 27-215 122-348 (522)
132 PRK07812 O-acetylhomoserine am 99.7 3.9E-16 8.5E-21 150.2 19.0 147 34-199 69-220 (436)
133 cd00609 AAT_like Aspartate ami 99.7 1.7E-16 3.7E-21 146.8 15.9 180 29-223 35-229 (350)
134 PRK08361 aspartate aminotransf 99.7 1.5E-16 3.3E-21 151.2 15.9 177 29-221 69-259 (391)
135 PRK08068 transaminase; Reviewe 99.7 1.6E-16 3.4E-21 150.9 15.9 178 29-221 69-262 (389)
136 PRK07309 aromatic amino acid a 99.7 2.9E-16 6.4E-21 149.3 17.7 182 29-222 66-260 (391)
137 PRK04311 selenocysteine syntha 99.7 1.5E-16 3.2E-21 153.8 15.7 171 34-226 127-318 (464)
138 TIGR03537 DapC succinyldiamino 99.7 2.3E-16 5E-21 147.7 16.5 183 29-222 35-229 (350)
139 PRK06702 O-acetylhomoserine am 99.7 4.1E-16 9E-21 149.5 18.4 148 34-200 61-213 (432)
140 TIGR02379 ECA_wecE TDP-4-keto- 99.7 1.6E-15 3.6E-20 143.6 22.3 170 34-221 31-203 (376)
141 PRK05967 cystathionine beta-ly 99.7 1.2E-16 2.6E-21 151.6 14.5 170 29-221 59-233 (395)
142 PRK07671 cystathionine beta-ly 99.7 4.7E-16 1E-20 147.3 18.4 165 33-221 49-219 (377)
143 TIGR01822 2am3keto_CoA 2-amino 99.7 1.8E-16 3.8E-21 150.4 15.5 172 29-221 78-260 (393)
144 PRK08247 cystathionine gamma-s 99.7 2.5E-16 5.5E-21 148.6 16.3 164 34-221 52-221 (366)
145 PRK09147 succinyldiaminopimela 99.7 1.8E-16 4E-21 150.8 15.4 178 29-221 64-267 (396)
146 PLN02368 alanine transaminase 99.7 3.5E-16 7.6E-21 149.5 17.3 183 29-221 106-317 (407)
147 KOG0259|consensus 99.7 3E-16 6.5E-21 143.2 15.8 179 20-216 96-288 (447)
148 PRK07682 hypothetical protein; 99.7 1.7E-16 3.6E-21 150.1 14.7 185 20-222 50-249 (378)
149 PRK07777 aminotransferase; Val 99.7 2.2E-16 4.7E-21 149.8 15.5 178 29-221 60-254 (387)
150 PRK09148 aminotransferase; Val 99.7 2.4E-16 5.3E-21 150.6 15.7 186 21-222 62-261 (405)
151 PRK06290 aspartate aminotransf 99.7 2.7E-16 6E-21 150.5 15.7 179 30-222 81-274 (410)
152 PRK07366 succinyldiaminopimela 99.7 2.4E-16 5.3E-21 149.5 15.0 179 29-222 67-262 (388)
153 PRK07337 aminotransferase; Val 99.7 2.6E-16 5.7E-21 149.3 15.1 178 29-221 66-254 (388)
154 PF00282 Pyridoxal_deC: Pyrido 99.7 4.6E-16 9.9E-21 147.0 16.5 183 27-215 72-277 (373)
155 PRK03158 histidinol-phosphate 99.7 7.6E-16 1.6E-20 144.6 18.0 170 36-221 66-244 (359)
156 PRK13355 bifunctional HTH-doma 99.7 4.3E-16 9.3E-21 153.4 16.9 171 29-214 184-368 (517)
157 PRK15407 lipopolysaccharide bi 99.7 5.3E-15 1.2E-19 142.6 23.9 169 35-215 64-235 (438)
158 PLN00145 tyrosine/nicotianamin 99.7 1E-15 2.3E-20 147.4 18.9 176 21-214 88-277 (430)
159 PRK06939 2-amino-3-ketobutyrat 99.7 3.5E-16 7.5E-21 148.2 15.1 174 27-221 80-264 (397)
160 PRK15029 arginine decarboxylas 99.7 4.9E-16 1.1E-20 156.7 16.8 166 35-215 206-401 (755)
161 PRK01688 histidinol-phosphate 99.7 3.4E-16 7.5E-21 146.8 14.8 171 37-223 60-237 (351)
162 PLN02187 rooty/superroot1 99.7 9.9E-16 2.1E-20 148.8 18.4 175 22-214 103-291 (462)
163 PRK11706 TDP-4-oxo-6-deoxy-D-g 99.7 2.8E-15 6E-20 141.9 21.0 151 33-198 30-184 (375)
164 PRK07550 hypothetical protein; 99.7 6.5E-16 1.4E-20 146.5 16.6 179 29-222 66-259 (386)
165 PRK08045 cystathionine gamma-s 99.7 1.2E-15 2.6E-20 144.9 18.4 165 34-221 52-222 (386)
166 PRK06460 hypothetical protein; 99.7 6.4E-16 1.4E-20 146.3 16.1 171 29-222 40-215 (376)
167 PRK03321 putative aminotransfe 99.7 4.8E-16 1E-20 145.5 15.1 172 36-222 59-239 (352)
168 PRK08636 aspartate aminotransf 99.7 7.9E-16 1.7E-20 146.9 16.7 182 29-222 70-271 (403)
169 PLN02880 tyrosine decarboxylas 99.7 3.5E-16 7.5E-21 152.7 14.3 183 27-215 115-322 (490)
170 PRK01533 histidinol-phosphate 99.7 8.2E-16 1.8E-20 145.1 16.4 169 37-222 67-245 (366)
171 PRK05387 histidinol-phosphate 99.7 1.3E-15 2.8E-20 142.5 17.6 164 37-221 63-232 (353)
172 PRK06084 O-acetylhomoserine am 99.7 1.3E-15 2.7E-20 146.5 17.8 147 34-200 58-209 (425)
173 TIGR02080 O_succ_thio_ly O-suc 99.7 1.7E-15 3.6E-20 143.8 18.4 165 34-221 51-221 (382)
174 TIGR03531 selenium_SpcS O-phos 99.7 2.8E-15 6.2E-20 143.8 19.5 178 32-221 103-295 (444)
175 PRK05166 histidinol-phosphate 99.7 2.6E-15 5.7E-20 141.8 18.6 169 38-221 75-254 (371)
176 PRK06348 aspartate aminotransf 99.7 1.3E-15 2.7E-20 144.6 16.3 178 29-221 65-256 (384)
177 PLN02656 tyrosine transaminase 99.7 2.4E-15 5.2E-20 143.9 18.3 171 29-214 72-256 (409)
178 PRK02731 histidinol-phosphate 99.7 2.2E-15 4.7E-20 141.8 17.6 169 37-221 70-247 (367)
179 PLN02376 1-aminocyclopropane-1 99.7 2.6E-15 5.7E-20 146.9 18.7 180 21-215 88-295 (496)
180 PTZ00377 alanine aminotransfer 99.7 1.3E-15 2.7E-20 148.8 16.5 188 21-221 109-325 (481)
181 PRK07683 aminotransferase A; V 99.7 1.6E-15 3.4E-20 144.1 16.3 179 29-222 64-256 (387)
182 PLN02590 probable tyrosine dec 99.7 2E-15 4.3E-20 148.1 17.3 183 27-215 163-370 (539)
183 cd00617 Tnase_like Tryptophana 99.7 4.5E-15 9.7E-20 142.5 19.2 245 36-301 55-350 (431)
184 TIGR03588 PseC UDP-4-keto-6-de 99.7 3.9E-15 8.5E-20 141.0 18.4 166 35-219 30-204 (380)
185 COG1103 Archaea-specific pyrid 99.7 1.4E-15 3E-20 133.5 13.8 170 35-221 62-239 (382)
186 PTZ00433 tyrosine aminotransfe 99.7 3.6E-15 7.8E-20 142.8 18.1 170 29-213 74-263 (412)
187 PRK07049 methionine gamma-lyas 99.7 3E-15 6.5E-20 144.0 17.5 169 35-222 84-265 (427)
188 PRK08056 threonine-phosphate d 99.7 3E-15 6.6E-20 140.6 17.2 169 36-222 57-236 (356)
189 TIGR03538 DapC_gpp succinyldia 99.7 1.4E-15 3E-20 144.7 14.9 178 29-221 63-266 (393)
190 PRK08175 aminotransferase; Val 99.7 2E-15 4.4E-20 143.7 16.0 181 29-222 66-260 (395)
191 PRK07582 cystathionine gamma-l 99.7 1.8E-15 3.9E-20 142.8 15.4 162 34-222 51-218 (366)
192 PRK06107 aspartate aminotransf 99.7 1.6E-15 3.4E-20 144.8 14.6 179 29-222 69-264 (402)
193 PLN00143 tyrosine/nicotianamin 99.7 5.9E-15 1.3E-19 141.3 18.4 171 29-214 73-257 (409)
194 PRK07179 hypothetical protein; 99.7 2E-15 4.3E-20 144.3 15.1 164 34-221 99-270 (407)
195 PRK15481 transcriptional regul 99.6 2.2E-15 4.8E-20 145.0 14.8 175 29-221 120-303 (431)
196 PRK07269 cystathionine gamma-s 99.6 6.7E-15 1.5E-19 138.8 17.7 162 34-221 54-221 (364)
197 PTZ00376 aspartate aminotransf 99.6 1.1E-15 2.4E-20 145.9 12.5 180 21-212 66-264 (404)
198 PRK04781 histidinol-phosphate 99.6 1.2E-14 2.5E-19 137.1 19.0 174 36-223 61-244 (364)
199 PRK03317 histidinol-phosphate 99.6 9.2E-15 2E-19 137.8 18.3 179 30-222 65-251 (368)
200 PRK08363 alanine aminotransfer 99.6 4.3E-15 9.3E-20 141.5 15.5 175 29-218 69-258 (398)
201 TIGR00858 bioF 8-amino-7-oxono 99.6 4.7E-15 1E-19 138.4 15.5 171 29-221 56-236 (360)
202 PRK07568 aspartate aminotransf 99.6 3.7E-14 7.9E-19 134.8 21.8 176 29-220 65-257 (397)
203 PF01053 Cys_Met_Meta_PP: Cys/ 99.6 1.6E-14 3.4E-19 136.8 18.8 166 33-221 54-227 (386)
204 PRK04870 histidinol-phosphate 99.6 1.3E-15 2.8E-20 142.9 11.3 171 37-223 66-241 (356)
205 TIGR01140 L_thr_O3P_dcar L-thr 99.6 1.1E-14 2.3E-19 135.5 17.2 162 37-223 50-218 (330)
206 PLN02231 alanine transaminase 99.6 4.2E-15 9E-20 146.5 15.1 183 29-221 167-377 (534)
207 PLN02450 1-aminocyclopropane-1 99.6 1.5E-14 3.2E-19 140.8 18.7 176 29-216 85-289 (468)
208 TIGR01825 gly_Cac_T_rel pyrido 99.6 4.9E-15 1.1E-19 140.1 14.9 171 29-221 73-252 (385)
209 PF00155 Aminotran_1_2: Aminot 99.6 3.5E-15 7.6E-20 139.8 13.5 191 20-223 37-245 (363)
210 PRK02610 histidinol-phosphate 99.6 2E-14 4.3E-19 136.0 18.7 178 30-221 66-256 (374)
211 PRK03080 phosphoserine aminotr 99.6 1.7E-15 3.7E-20 143.5 11.1 164 31-222 45-216 (378)
212 PLN02724 Molybdenum cofactor s 99.6 5.5E-15 1.2E-19 152.3 15.7 182 28-224 72-286 (805)
213 PF01212 Beta_elim_lyase: Beta 99.6 1.2E-15 2.7E-20 139.2 9.5 174 30-218 25-212 (290)
214 PRK04635 histidinol-phosphate 99.6 1.2E-15 2.7E-20 143.1 9.4 168 36-222 62-237 (354)
215 PRK09265 aminotransferase AlaT 99.6 1.7E-14 3.6E-19 137.8 17.4 172 29-214 71-255 (404)
216 PRK06836 aspartate aminotransf 99.6 1.9E-14 4E-19 137.1 17.6 175 29-218 72-263 (394)
217 PRK13392 5-aminolevulinate syn 99.6 5.4E-14 1.2E-18 134.5 20.7 169 32-220 89-266 (410)
218 PRK09257 aromatic amino acid a 99.6 1.1E-14 2.3E-19 138.7 15.7 179 22-213 64-260 (396)
219 PRK05839 hypothetical protein; 99.6 6.4E-15 1.4E-19 139.4 14.0 184 20-221 53-254 (374)
220 TIGR01264 tyr_amTase_E tyrosin 99.6 1.9E-14 4.2E-19 137.2 17.3 171 29-215 72-256 (401)
221 PRK06425 histidinol-phosphate 99.6 3.7E-14 8E-19 132.0 18.5 167 36-223 42-217 (332)
222 PLN02607 1-aminocyclopropane-1 99.6 2.9E-14 6.3E-19 138.0 18.2 188 17-219 85-300 (447)
223 PRK06855 aminotransferase; Val 99.6 2.8E-14 6E-19 137.6 18.0 177 21-214 67-258 (433)
224 TIGR01821 5aminolev_synth 5-am 99.6 8.9E-14 1.9E-18 132.7 20.7 171 31-221 87-266 (402)
225 PLN02397 aspartate transaminas 99.6 1.6E-14 3.4E-19 138.9 15.5 172 29-212 90-282 (423)
226 COG2873 MET17 O-acetylhomoseri 99.6 1.7E-14 3.7E-19 131.7 14.8 156 35-214 63-223 (426)
227 PRK08153 histidinol-phosphate 99.6 9.1E-15 2E-19 138.1 13.5 171 36-221 69-245 (369)
228 TIGR03576 pyridox_MJ0158 pyrid 99.6 1.1E-14 2.4E-19 136.4 13.9 166 30-222 50-225 (346)
229 PRK13578 ornithine decarboxyla 99.6 1.5E-14 3.2E-19 144.9 15.6 168 35-217 175-372 (720)
230 PRK05958 8-amino-7-oxononanoat 99.6 1.6E-14 3.6E-19 136.1 14.8 171 29-221 79-258 (385)
231 TIGR03801 asp_4_decarbox aspar 99.6 1.1E-14 2.3E-19 142.4 13.6 178 29-216 127-327 (521)
232 PLN02483 serine palmitoyltrans 99.6 1.7E-14 3.7E-19 141.0 14.8 171 30-222 142-331 (489)
233 TIGR01265 tyr_nico_aTase tyros 99.6 8.3E-14 1.8E-18 133.0 19.1 171 29-214 72-256 (403)
234 PLN03227 serine palmitoyltrans 99.6 2.1E-14 4.5E-19 136.8 14.4 168 30-220 39-228 (392)
235 PRK09275 aspartate aminotransf 99.6 1E-14 2.2E-19 142.7 12.3 182 29-222 133-339 (527)
236 PRK07865 N-succinyldiaminopime 99.6 9.8E-14 2.1E-18 130.6 18.1 171 29-222 61-246 (364)
237 PRK03967 histidinol-phosphate 99.6 1.5E-14 3.4E-19 134.9 11.6 165 37-221 58-226 (337)
238 PRK09064 5-aminolevulinate syn 99.6 2.9E-13 6.2E-18 129.3 19.9 171 31-221 88-267 (407)
239 PRK06434 cystathionine gamma-l 99.6 1.2E-13 2.7E-18 130.9 16.9 161 34-220 64-230 (384)
240 PLN02672 methionine S-methyltr 99.6 2.3E-13 5E-18 141.5 20.2 179 30-221 730-933 (1082)
241 KOG0053|consensus 99.6 4.7E-14 1E-18 131.7 13.6 169 33-224 76-250 (409)
242 TIGR02618 tyr_phenol_ly tyrosi 99.6 1.4E-13 3E-18 131.2 16.8 228 34-284 71-348 (450)
243 COG0626 MetC Cystathionine bet 99.5 2E-13 4.3E-18 128.6 17.0 167 33-221 62-234 (396)
244 PRK05937 8-amino-7-oxononanoat 99.5 2.2E-13 4.8E-18 128.7 17.4 167 27-214 49-225 (370)
245 PRK07590 L,L-diaminopimelate a 99.5 9.5E-14 2.1E-18 132.8 15.0 172 29-219 75-269 (409)
246 PRK07392 threonine-phosphate d 99.5 3.3E-13 7.2E-18 126.9 18.5 168 37-222 60-239 (360)
247 COG1168 MalY Bifunctional PLP- 99.5 5.7E-13 1.2E-17 122.4 19.3 247 32-302 62-343 (388)
248 PRK05355 3-phosphoserine/phosp 99.5 3.5E-14 7.6E-19 133.8 10.8 169 28-223 42-218 (360)
249 COG1982 LdcC Arginine/lysine/o 99.5 1.6E-13 3.5E-18 132.7 15.4 168 35-216 71-248 (557)
250 PRK13237 tyrosine phenol-lyase 99.5 3.6E-13 7.9E-18 128.6 17.6 228 34-284 78-355 (460)
251 PRK10534 L-threonine aldolase; 99.5 1.4E-13 3E-18 127.9 14.4 172 34-222 34-218 (333)
252 PRK14809 histidinol-phosphate 99.5 7.9E-14 1.7E-18 130.9 12.8 168 37-222 68-245 (357)
253 TIGR03811 tyr_de_CO2_Ent tyros 99.5 4.7E-13 1E-17 132.8 18.8 183 27-215 116-398 (608)
254 PRK15400 lysine decarboxylase 99.5 1.9E-13 4.2E-18 136.9 15.6 152 35-198 196-370 (714)
255 PRK06959 putative threonine-ph 99.5 5.7E-13 1.2E-17 124.5 17.4 160 37-223 56-222 (339)
256 PRK13393 5-aminolevulinate syn 99.5 2.9E-13 6.3E-18 129.4 15.2 171 31-221 87-266 (406)
257 TIGR03539 DapC_actino succinyl 99.5 1.5E-13 3.2E-18 129.2 12.5 170 29-222 55-240 (357)
258 PRK05664 threonine-phosphate d 99.5 1.8E-13 3.9E-18 127.3 12.9 158 37-222 52-215 (330)
259 COG2008 GLY1 Threonine aldolas 99.5 4E-13 8.6E-18 122.8 14.6 230 30-283 31-291 (342)
260 COG4992 ArgD Ornithine/acetylo 99.5 7.8E-12 1.7E-16 116.6 22.5 170 34-225 84-279 (404)
261 TIGR03542 DAPAT_plant LL-diami 99.5 4.8E-13 1E-17 127.7 14.7 171 29-218 74-265 (402)
262 PRK04073 rocD ornithine--oxo-a 99.5 1.1E-11 2.4E-16 118.2 23.7 173 34-222 82-278 (396)
263 PRK06358 threonine-phosphate d 99.5 7.2E-13 1.6E-17 124.5 14.9 169 36-221 56-236 (354)
264 PRK08354 putative aminotransfe 99.5 1E-12 2.2E-17 121.3 15.5 150 37-213 43-196 (311)
265 TIGR01364 serC_1 phosphoserine 99.5 2.4E-13 5.1E-18 127.6 11.2 166 29-223 32-207 (349)
266 PLN02822 serine palmitoyltrans 99.5 6.8E-13 1.5E-17 129.5 14.6 170 30-221 150-335 (481)
267 PRK07908 hypothetical protein; 99.5 6.4E-13 1.4E-17 124.4 13.5 163 37-222 61-227 (349)
268 PRK15399 lysine decarboxylase 99.5 1.3E-12 2.8E-17 130.9 16.2 164 35-215 196-382 (713)
269 PRK08637 hypothetical protein; 99.5 2.6E-12 5.6E-17 122.1 16.9 179 21-214 38-242 (388)
270 COG1167 ARO8 Transcriptional r 99.4 5.8E-12 1.2E-16 122.3 18.8 178 29-222 131-321 (459)
271 PRK09440 avtA valine--pyruvate 99.4 7.2E-13 1.6E-17 126.9 12.3 186 21-222 68-271 (416)
272 TIGR01366 serC_3 phosphoserine 99.4 4E-13 8.6E-18 126.7 9.4 165 29-222 36-207 (361)
273 PRK00854 rocD ornithine--oxo-a 99.4 7.1E-12 1.5E-16 119.5 17.4 173 34-222 83-279 (401)
274 PRK01278 argD acetylornithine 99.4 1.3E-11 2.9E-16 117.2 18.7 177 34-222 73-266 (389)
275 cd00611 PSAT_like Phosphoserin 99.4 4.4E-13 9.6E-18 126.0 7.9 169 30-223 40-215 (355)
276 TIGR01365 serC_2 phosphoserine 99.4 7.6E-13 1.6E-17 124.9 9.4 169 27-221 32-206 (374)
277 cd00610 OAT_like Acetyl ornith 99.4 1.4E-11 3E-16 117.5 18.0 175 32-221 77-281 (413)
278 TIGR03246 arg_catab_astC succi 99.4 1.5E-11 3.3E-16 117.3 18.0 172 34-222 77-270 (397)
279 PRK14808 histidinol-phosphate 99.4 2.7E-12 5.9E-17 119.7 11.4 161 37-222 59-225 (335)
280 TIGR00707 argD acetylornithine 99.4 1.4E-11 3E-16 116.3 15.5 178 34-223 69-262 (379)
281 COG0001 HemL Glutamate-1-semia 99.4 2E-11 4.2E-16 115.0 15.8 167 36-221 95-289 (432)
282 COG3844 Kynureninase [Amino ac 99.3 2E-11 4.3E-16 110.0 13.7 171 30-221 72-250 (407)
283 PRK03244 argD acetylornithine 99.3 5.3E-11 1.2E-15 113.4 17.6 163 37-222 88-274 (398)
284 PLN02955 8-amino-7-oxononanoat 99.3 2.4E-11 5.3E-16 117.2 14.2 181 27-221 140-338 (476)
285 PF06838 Met_gamma_lyase: Meth 99.3 2E-11 4.4E-16 112.0 12.8 196 9-226 35-250 (403)
286 COG0156 BioF 7-keto-8-aminopel 99.3 2.3E-11 5E-16 114.7 13.3 179 27-227 77-271 (388)
287 TIGR01885 Orn_aminotrans ornit 99.3 1.2E-10 2.7E-15 111.1 18.2 176 34-222 79-278 (401)
288 PTZ00125 ornithine aminotransf 99.3 1.1E-10 2.4E-15 111.1 16.8 179 34-222 73-270 (400)
289 PRK02936 argD acetylornithine 99.3 2.6E-10 5.6E-15 107.8 18.9 167 33-222 70-258 (377)
290 TIGR00713 hemL glutamate-1-sem 99.3 8.3E-11 1.8E-15 113.1 15.3 175 35-222 89-285 (423)
291 PRK05093 argD bifunctional N-s 99.3 1.9E-10 4.1E-15 109.9 17.7 173 34-223 82-276 (403)
292 COG1921 SelA Selenocysteine sy 99.3 3.7E-11 8.1E-16 111.9 11.8 166 38-226 72-248 (395)
293 PLN02624 ornithine-delta-amino 99.3 5.9E-10 1.3E-14 108.8 20.0 175 34-221 117-315 (474)
294 PRK12381 bifunctional succinyl 99.2 5.6E-10 1.2E-14 106.9 18.8 172 34-223 81-275 (406)
295 KOG0633|consensus 99.2 1.1E-11 2.3E-16 108.7 6.0 165 47-223 82-251 (375)
296 PRK07505 hypothetical protein; 99.2 1.5E-10 3.2E-15 110.6 14.5 128 32-172 89-219 (402)
297 KOG1368|consensus 99.2 6.3E-11 1.4E-15 105.6 10.6 172 34-220 56-244 (384)
298 KOG0256|consensus 99.2 1.6E-10 3.4E-15 107.0 13.6 185 16-216 110-320 (471)
299 PF03841 SelA: L-seryl-tRNA se 99.2 4.2E-12 9E-17 117.4 3.0 167 37-224 50-236 (367)
300 PRK02627 acetylornithine amino 99.2 5E-10 1.1E-14 106.4 17.3 178 33-222 80-273 (396)
301 PRK03715 argD acetylornithine 99.2 1.3E-09 2.9E-14 103.9 19.3 179 34-225 78-273 (395)
302 PRK04013 argD acetylornithine/ 99.2 1.2E-09 2.6E-14 103.1 18.1 157 34-217 66-247 (364)
303 PRK08117 4-aminobutyrate amino 99.2 1.4E-09 3.1E-14 104.9 18.9 175 34-222 86-298 (433)
304 COG0160 GabT 4-aminobutyrate a 99.2 4E-09 8.6E-14 100.9 21.0 178 34-227 99-318 (447)
305 PRK05964 adenosylmethionine--8 99.1 9.4E-10 2E-14 105.9 15.1 181 34-222 85-292 (423)
306 PRK12389 glutamate-1-semialdeh 99.1 3.2E-09 6.9E-14 102.4 18.7 168 35-222 94-290 (428)
307 PLN02452 phosphoserine transam 99.1 2.2E-10 4.7E-15 108.1 9.7 166 29-223 47-222 (365)
308 PRK09792 4-aminobutyrate trans 99.1 6.7E-09 1.4E-13 100.0 20.2 176 34-222 83-289 (421)
309 PRK06943 adenosylmethionine--8 99.1 3.5E-09 7.7E-14 102.7 17.5 180 34-221 97-313 (453)
310 PRK04612 argD acetylornithine 99.1 7.7E-09 1.7E-13 99.1 19.3 174 34-222 82-278 (408)
311 PRK00062 glutamate-1-semialdeh 99.1 2E-09 4.2E-14 103.8 15.2 168 36-222 92-287 (426)
312 PRK06541 hypothetical protein; 99.1 8.9E-09 1.9E-13 100.2 19.3 180 34-221 95-312 (460)
313 PRK04260 acetylornithine amino 99.1 3.1E-09 6.8E-14 100.5 15.6 153 53-222 87-256 (375)
314 PRK12403 putative aminotransfe 99.1 1.2E-08 2.5E-13 99.3 19.8 182 32-221 96-313 (460)
315 PRK07046 aminotransferase; Val 99.1 5.4E-09 1.2E-13 101.5 17.3 167 34-221 115-306 (453)
316 PLN02482 glutamate-1-semialdeh 99.1 8E-09 1.7E-13 100.7 18.0 168 35-222 140-336 (474)
317 PRK07482 hypothetical protein; 99.1 9.2E-09 2E-13 100.1 18.2 179 34-221 94-311 (461)
318 PRK08360 4-aminobutyrate amino 99.1 1.3E-08 2.8E-13 98.5 19.0 176 34-222 84-295 (443)
319 PLN00144 acetylornithine trans 99.1 1.7E-08 3.6E-13 96.0 19.2 174 34-222 57-258 (382)
320 PRK07678 aminotransferase; Val 99.1 1.4E-08 3E-13 98.6 18.9 182 34-222 89-305 (451)
321 TIGR00700 GABAtrnsam 4-aminobu 99.0 2E-08 4.3E-13 96.7 19.5 176 34-222 76-288 (420)
322 PRK06777 4-aminobutyrate amino 99.0 1.4E-08 3.1E-13 97.7 18.4 173 35-222 84-289 (421)
323 PRK08593 4-aminobutyrate amino 99.0 2E-08 4.4E-13 97.3 19.3 175 34-222 85-298 (445)
324 COG0161 BioA Adenosylmethionin 99.0 2.4E-09 5.1E-14 102.0 12.4 174 35-221 88-306 (449)
325 TIGR03372 putres_am_tran putre 99.0 2.4E-08 5.2E-13 96.6 19.2 171 34-221 117-315 (442)
326 PRK06916 adenosylmethionine--8 99.0 1.9E-08 4.2E-13 97.8 18.5 180 34-221 99-315 (460)
327 PRK05769 4-aminobutyrate amino 99.0 4.6E-08 1E-12 94.7 21.0 175 34-224 97-314 (441)
328 TIGR02617 tnaA_trp_ase tryptop 99.0 6.1E-09 1.3E-13 99.1 14.4 229 34-284 74-363 (467)
329 TIGR02407 ectoine_ectB diamino 99.0 4.2E-08 9E-13 94.2 19.8 174 34-221 78-284 (412)
330 KOG0629|consensus 99.0 4.1E-09 8.9E-14 98.1 12.3 181 27-215 134-336 (510)
331 PRK09264 diaminobutyrate--2-ox 99.0 4.3E-08 9.3E-13 94.5 19.9 172 34-218 82-286 (425)
332 PRK08742 adenosylmethionine--8 99.0 3.1E-08 6.8E-13 96.6 19.0 180 34-221 107-328 (472)
333 KOG1383|consensus 99.0 5.1E-09 1.1E-13 98.5 12.8 179 20-215 107-304 (491)
334 PRK07030 adenosylmethionine--8 99.0 1.4E-08 3.1E-13 98.8 16.5 179 34-221 90-306 (466)
335 PRK07495 4-aminobutyrate amino 99.0 4.5E-08 9.8E-13 94.3 19.7 175 34-222 83-289 (425)
336 PRK05965 hypothetical protein; 99.0 1.9E-08 4.2E-13 97.8 17.2 179 34-221 90-306 (459)
337 PRK07986 adenosylmethionine--8 99.0 9.7E-09 2.1E-13 99.0 14.9 180 34-222 86-297 (428)
338 PRK05630 adenosylmethionine--8 99.0 1.3E-08 2.9E-13 97.9 15.5 176 34-221 83-292 (422)
339 PRK00615 glutamate-1-semialdeh 99.0 1.8E-08 3.9E-13 97.2 16.1 173 35-221 94-290 (433)
340 PRK06058 4-aminobutyrate amino 99.0 4.4E-08 9.6E-13 94.9 18.9 173 34-222 99-310 (443)
341 PRK12462 phosphoserine aminotr 99.0 3.8E-09 8.3E-14 99.2 11.0 166 29-223 44-220 (364)
342 PRK06173 adenosylmethionine--8 99.0 2.5E-08 5.3E-13 96.2 16.3 179 34-221 87-298 (429)
343 PRK05639 4-aminobutyrate amino 99.0 5.7E-08 1.2E-12 94.5 18.9 177 34-224 96-315 (457)
344 TIGR00709 dat 2,4-diaminobutyr 99.0 7E-08 1.5E-12 93.5 19.3 171 34-217 82-292 (442)
345 PRK09221 beta alanine--pyruvat 98.9 2.8E-08 6E-13 96.4 16.0 179 34-221 92-309 (445)
346 PLN02760 4-aminobutyrate:pyruv 98.9 4.5E-08 9.8E-13 96.2 17.1 184 32-221 131-351 (504)
347 PRK06918 4-aminobutyrate amino 98.9 9.9E-08 2.1E-12 92.7 19.0 176 34-222 97-310 (451)
348 PRK13360 omega amino acid--pyr 98.9 5.2E-08 1.1E-12 94.3 17.0 179 34-221 89-306 (442)
349 PRK06105 aminotransferase; Pro 98.9 6.4E-08 1.4E-12 94.2 17.5 182 34-221 92-309 (460)
350 PRK06082 4-aminobutyrate amino 98.9 1.3E-07 2.8E-12 92.1 19.6 175 34-222 113-320 (459)
351 PRK11522 putrescine--2-oxoglut 98.9 7.1E-08 1.5E-12 93.8 17.7 177 34-221 124-322 (459)
352 PRK06917 hypothetical protein; 98.9 1.5E-07 3.3E-12 91.2 19.5 180 34-221 74-291 (447)
353 PF00202 Aminotran_3: Aminotra 98.9 2E-07 4.3E-12 87.2 19.6 183 33-223 58-269 (339)
354 PRK08088 4-aminobutyrate amino 98.9 8.4E-08 1.8E-12 92.5 17.5 174 36-222 86-290 (425)
355 PRK06062 hypothetical protein; 98.9 9.8E-08 2.1E-12 92.7 17.9 173 34-222 95-306 (451)
356 PRK07481 hypothetical protein; 98.9 8.1E-08 1.8E-12 93.2 16.9 179 34-221 86-304 (449)
357 PRK07480 putative aminotransfe 98.9 1.4E-07 3.1E-12 91.7 18.1 181 34-221 94-310 (456)
358 KOG1360|consensus 98.9 6.7E-08 1.4E-12 89.6 14.7 238 32-300 214-476 (570)
359 PRK06149 hypothetical protein; 98.9 1.8E-07 3.8E-12 98.8 19.4 174 34-222 624-836 (972)
360 PRK07483 hypothetical protein; 98.8 2.8E-07 6.1E-12 89.3 19.3 177 34-222 73-292 (443)
361 TIGR00508 bioA adenosylmethion 98.8 1.2E-07 2.6E-12 91.5 16.4 179 36-222 90-300 (427)
362 PRK07036 hypothetical protein; 98.8 1.7E-07 3.6E-12 91.4 17.3 181 34-221 95-312 (466)
363 PRK06938 diaminobutyrate--2-ox 98.8 4.9E-07 1.1E-11 88.1 19.6 167 34-217 106-317 (464)
364 KOG1402|consensus 98.8 2.5E-07 5.4E-12 83.9 15.3 172 35-225 102-303 (427)
365 PRK06931 diaminobutyrate--2-ox 98.8 5.3E-07 1.2E-11 87.7 18.3 171 34-217 101-311 (459)
366 COG3977 Alanine-alpha-ketoisov 98.8 3.1E-08 6.7E-13 88.8 8.6 188 18-221 65-270 (417)
367 TIGR00699 GABAtrns_euk 4-amino 98.8 6.7E-07 1.5E-11 87.0 18.5 160 34-198 105-325 (464)
368 PRK06209 glutamate-1-semialdeh 98.7 1.3E-07 2.9E-12 91.3 13.2 161 38-220 92-271 (431)
369 KOG1404|consensus 98.7 8E-08 1.7E-12 88.8 11.0 179 34-225 92-306 (442)
370 KOG0258|consensus 98.7 7.6E-08 1.7E-12 88.9 10.8 138 27-171 110-257 (475)
371 COG4100 Cystathionine beta-lya 98.7 1.2E-07 2.5E-12 85.1 10.5 193 10-226 47-261 (416)
372 KOG1357|consensus 98.7 5.4E-08 1.2E-12 91.4 7.6 170 30-222 178-367 (519)
373 KOG0634|consensus 98.7 3E-07 6.5E-12 86.1 12.1 133 29-171 99-246 (472)
374 KOG1401|consensus 98.7 1.1E-06 2.4E-11 81.8 15.8 177 38-223 102-298 (433)
375 PRK06148 hypothetical protein; 98.7 1.5E-06 3.2E-11 92.1 18.8 176 34-222 663-876 (1013)
376 PF05889 SLA_LP_auto_ag: Solub 98.6 6.3E-08 1.4E-12 90.5 6.4 179 37-226 59-254 (389)
377 KOG1359|consensus 98.6 1.5E-07 3.3E-12 84.1 7.3 166 30-221 108-283 (417)
378 TIGR03251 LAT_fam L-lysine 6-t 98.5 3.7E-06 8.1E-11 81.2 16.2 160 34-197 85-289 (431)
379 COG1448 TyrB Aspartate/tyrosin 98.5 1.8E-06 3.9E-11 80.0 12.1 172 29-214 68-261 (396)
380 COG3033 TnaA Tryptophanase [Am 98.5 5.2E-06 1.1E-10 76.4 14.2 237 34-287 79-369 (471)
381 PRK08297 L-lysine aminotransfe 98.4 7.2E-06 1.6E-10 79.5 15.8 160 34-197 92-296 (443)
382 PLN02974 adenosylmethionine-8- 98.4 2.2E-05 4.7E-10 81.2 19.6 180 34-222 409-677 (817)
383 PF12897 Aminotran_MocR: Alani 98.4 3.6E-06 7.8E-11 78.4 12.3 183 28-219 63-273 (425)
384 KOG0628|consensus 98.3 7.1E-06 1.5E-10 77.6 12.5 164 39-203 118-311 (511)
385 KOG3846|consensus 97.8 0.00053 1.1E-08 62.2 13.2 132 80-218 153-295 (465)
386 KOG1358|consensus 97.4 0.0016 3.5E-08 60.9 11.1 149 30-198 135-307 (467)
387 KOG1411|consensus 97.4 0.0012 2.6E-08 60.8 9.2 129 80-213 144-287 (427)
388 KOG1412|consensus 97.4 0.0038 8.3E-08 56.8 12.3 129 81-214 124-268 (410)
389 PLN02994 1-aminocyclopropane-1 96.4 0.01 2.2E-07 49.2 6.7 60 23-93 88-152 (153)
390 PF04864 Alliinase_C: Allinase 95.6 0.0055 1.2E-07 56.6 1.7 163 35-221 44-217 (363)
391 COG1932 SerC Phosphoserine ami 95.2 0.067 1.4E-06 49.9 7.2 167 30-224 46-223 (365)
392 KOG1403|consensus 94.7 0.031 6.8E-07 50.8 3.6 66 151-224 232-303 (452)
393 KOG3843|consensus 94.3 0.5 1.1E-05 42.5 10.2 182 35-226 58-256 (432)
394 KOG1405|consensus 91.9 0.46 9.9E-06 44.4 6.3 97 118-226 254-364 (484)
395 cd02070 corrinoid_protein_B12- 76.5 48 0.001 28.4 13.3 147 34-192 33-191 (201)
396 cd02067 B12-binding B12 bindin 75.7 21 0.00046 27.5 8.0 85 98-192 22-109 (119)
397 PF05368 NmrA: NmrA-like famil 70.2 37 0.0008 29.3 9.0 60 98-167 39-99 (233)
398 TIGR02026 BchE magnesium-proto 67.5 26 0.00056 34.6 8.2 68 99-172 32-102 (497)
399 PF02310 B12-binding: B12 bind 67.0 45 0.00097 25.4 8.0 67 98-172 23-91 (121)
400 PRK09375 quinolinate synthetas 65.8 8.7 0.00019 35.7 4.2 25 116-143 106-130 (319)
401 KOG0630|consensus 65.7 22 0.00048 35.0 6.9 116 83-200 232-366 (838)
402 TIGR00640 acid_CoA_mut_C methy 65.3 62 0.0013 25.9 8.6 57 98-162 25-81 (132)
403 COG2870 RfaE ADP-heptose synth 64.0 19 0.00041 34.6 6.0 63 105-169 115-178 (467)
404 TIGR02370 pyl_corrinoid methyl 62.4 99 0.0022 26.4 10.4 84 98-193 107-194 (197)
405 PF04748 Polysacc_deac_2: Dive 62.1 65 0.0014 28.0 8.8 129 31-166 72-206 (213)
406 COG2185 Sbm Methylmalonyl-CoA 61.6 54 0.0012 26.8 7.6 76 81-164 11-93 (143)
407 COG1171 IlvA Threonine dehydra 61.0 23 0.00049 33.4 6.0 93 9-110 138-230 (347)
408 PRK02261 methylaspartate mutas 60.5 87 0.0019 25.1 9.1 64 98-169 26-92 (137)
409 smart00642 Aamy Alpha-amylase 60.4 7.9 0.00017 32.3 2.7 27 143-170 65-91 (166)
410 KOG2790|consensus 59.6 1.1E+02 0.0025 28.1 9.9 169 29-221 47-225 (370)
411 COG1105 FruK Fructose-1-phosph 59.0 20 0.00043 33.2 5.2 56 116-171 110-168 (310)
412 PF00128 Alpha-amylase: Alpha 57.3 7.8 0.00017 34.6 2.3 27 143-170 47-73 (316)
413 cd01018 ZntC Metal binding pro 57.3 54 0.0012 29.3 7.8 73 81-166 169-244 (266)
414 PRK08091 ribulose-phosphate 3- 55.6 31 0.00067 30.5 5.7 72 117-192 129-207 (228)
415 PF10087 DUF2325: Uncharacteri 55.3 68 0.0015 23.9 6.9 63 96-168 16-81 (97)
416 PRK09722 allulose-6-phosphate 53.7 32 0.00069 30.4 5.5 87 99-192 104-197 (229)
417 cd01017 AdcA Metal binding pro 53.5 64 0.0014 29.1 7.7 76 81-166 170-247 (282)
418 TIGR01501 MthylAspMutase methy 53.3 49 0.0011 26.7 6.1 58 98-163 24-81 (134)
419 PRK14057 epimerase; Provisiona 51.6 37 0.00081 30.5 5.6 72 117-192 143-221 (254)
420 cd02072 Glm_B12_BD B12 binding 51.5 57 0.0012 26.1 6.1 58 98-163 22-79 (128)
421 PRK08883 ribulose-phosphate 3- 51.4 33 0.00071 30.1 5.2 87 99-192 102-195 (220)
422 COG1504 Uncharacterized conser 50.4 52 0.0011 25.6 5.4 49 115-168 47-95 (121)
423 PRK09441 cytoplasmic alpha-amy 49.9 13 0.00028 36.5 2.7 27 143-170 76-102 (479)
424 PF13407 Peripla_BP_4: Peripla 49.3 52 0.0011 28.4 6.3 62 98-167 23-85 (257)
425 COG2121 Uncharacterized protei 47.6 1.8E+02 0.0038 25.4 8.8 68 38-112 81-155 (214)
426 cd01019 ZnuA Zinc binding prot 47.6 99 0.0022 28.0 7.9 75 82-166 179-255 (286)
427 cd02071 MM_CoA_mut_B12_BD meth 45.7 1.1E+02 0.0025 23.6 7.1 64 98-169 22-88 (122)
428 cd01137 PsaA Metal binding pro 45.2 77 0.0017 28.8 6.8 74 82-165 177-252 (287)
429 TIGR03772 anch_rpt_subst ancho 45.1 3E+02 0.0065 27.2 11.2 77 82-166 371-449 (479)
430 PLN00196 alpha-amylase; Provis 44.2 19 0.00041 35.0 2.8 29 141-170 85-113 (428)
431 PF01297 TroA: Periplasmic sol 44.0 71 0.0015 28.2 6.3 75 82-166 150-226 (256)
432 PRK08745 ribulose-phosphate 3- 43.3 61 0.0013 28.5 5.6 72 117-192 121-199 (223)
433 PRK09545 znuA high-affinity zi 42.3 1.2E+02 0.0025 28.0 7.6 75 82-166 203-279 (311)
434 KOG4132|consensus 42.0 29 0.00063 30.6 3.2 47 95-142 19-65 (260)
435 cd06282 PBP1_GntR_like_2 Ligan 41.1 1.1E+02 0.0024 26.3 7.0 59 99-166 25-83 (266)
436 PF00532 Peripla_BP_1: Peripla 40.9 65 0.0014 28.9 5.6 72 85-167 6-84 (279)
437 COG0426 FpaA Uncharacterized f 40.1 1.7E+02 0.0037 28.0 8.3 96 51-155 215-320 (388)
438 PRK10886 DnaA initiator-associ 39.9 1.2E+02 0.0025 26.1 6.7 24 145-169 120-143 (196)
439 cd02069 methionine_synthase_B1 38.3 2.7E+02 0.0058 24.2 11.8 64 98-169 111-176 (213)
440 PF02571 CbiJ: Precorrin-6x re 38.1 32 0.00069 30.8 3.1 47 115-166 50-97 (249)
441 TIGR01305 GMP_reduct_1 guanosi 37.9 2.9E+02 0.0063 26.0 9.3 73 116-192 158-241 (343)
442 COG0296 GlgB 1,4-alpha-glucan 37.1 30 0.00066 35.2 3.0 29 142-171 208-236 (628)
443 PRK08057 cobalt-precorrin-6x r 37.1 33 0.00071 30.7 3.0 47 115-166 49-96 (248)
444 PRK10785 maltodextrin glucosid 37.1 27 0.00058 35.5 2.7 26 144-170 222-247 (598)
445 COG2004 RPS24A Ribosomal prote 37.0 29 0.00063 26.8 2.2 38 11-55 14-53 (107)
446 KOG4589|consensus 36.8 2.4E+02 0.0053 24.4 7.9 44 117-160 120-165 (232)
447 KOG3974|consensus 36.8 2.4E+02 0.0052 25.7 8.2 48 118-170 91-140 (306)
448 cd01020 TroA_b Metal binding p 36.8 99 0.0021 27.6 6.1 79 81-166 152-236 (264)
449 cd06281 PBP1_LacI_like_5 Ligan 36.7 1.6E+02 0.0034 25.6 7.4 59 99-166 25-83 (269)
450 TIGR02990 ectoine_eutA ectoine 36.6 3E+02 0.0066 24.3 10.0 69 98-172 140-215 (239)
451 COG1954 GlpP Glycerol-3-phosph 36.2 95 0.0021 26.2 5.3 44 118-169 12-57 (181)
452 PF03497 Anthrax_toxA: Anthrax 36.2 25 0.00053 29.8 1.9 65 144-219 13-80 (179)
453 COG0031 CysK Cysteine synthase 36.1 98 0.0021 28.6 5.9 68 53-128 65-134 (300)
454 TIGR00550 nadA quinolinate syn 35.0 1.8E+02 0.0039 26.9 7.6 36 105-144 75-116 (310)
455 COG0373 HemA Glutamyl-tRNA red 34.7 4.3E+02 0.0094 25.6 12.3 117 31-171 157-275 (414)
456 PF14871 GHL6: Hypothetical gl 34.3 1.4E+02 0.0031 23.8 6.0 17 150-166 45-61 (132)
457 cd04736 MDH_FMN Mandelate dehy 33.7 83 0.0018 29.8 5.2 72 115-191 243-317 (361)
458 cd01422 MGS Methylglyoxal synt 33.6 2.2E+02 0.0049 21.9 7.7 63 97-166 38-105 (115)
459 PRK12313 glycogen branching en 33.5 33 0.00071 35.0 2.7 26 144-170 216-241 (633)
460 TIGR02402 trehalose_TreZ malto 33.2 33 0.00072 34.3 2.6 27 143-170 155-181 (542)
461 PF04002 RadC: RadC-like JAB d 33.1 84 0.0018 24.7 4.4 49 116-168 50-105 (123)
462 PRK10933 trehalose-6-phosphate 32.6 35 0.00075 34.3 2.6 27 143-170 76-102 (551)
463 smart00857 Resolvase Resolvase 32.4 1.9E+02 0.0041 22.7 6.6 68 98-167 27-100 (148)
464 TIGR02403 trehalose_treC alpha 32.0 36 0.00078 34.1 2.6 26 144-170 71-96 (543)
465 cd01840 SGNH_hydrolase_yrhL_li 31.8 2.2E+02 0.0048 22.6 6.9 50 119-169 66-116 (150)
466 cd03319 L-Ala-DL-Glu_epimerase 31.5 3.2E+02 0.0069 24.9 8.7 48 117-168 238-285 (316)
467 PTZ00187 succinyl-CoA syntheta 31.4 2.2E+02 0.0048 26.5 7.5 67 90-166 75-144 (317)
468 PF02603 Hpr_kinase_N: HPr Ser 31.1 53 0.0011 26.0 3.0 47 116-168 64-111 (127)
469 cd06305 PBP1_methylthioribose_ 31.0 1.6E+02 0.0036 25.4 6.5 62 99-168 25-87 (273)
470 KOG3424|consensus 30.7 60 0.0013 25.6 3.1 38 10-54 16-55 (132)
471 TIGR01361 DAHP_synth_Bsub phos 30.2 1.2E+02 0.0026 27.3 5.4 86 114-199 139-236 (260)
472 PLN00191 enolase 30.2 3.4E+02 0.0074 26.6 9.0 83 82-168 311-394 (457)
473 PRK09505 malS alpha-amylase; R 30.1 41 0.00088 34.8 2.7 26 144-170 288-313 (683)
474 cd03315 MLE_like Muconate lact 29.8 3.5E+02 0.0075 23.9 8.5 48 117-168 190-237 (265)
475 PLN02361 alpha-amylase 29.8 42 0.00091 32.3 2.6 27 143-170 71-97 (401)
476 COG2022 ThiG Uncharacterized e 29.6 1.4E+02 0.003 26.7 5.4 57 131-193 150-212 (262)
477 COG0352 ThiE Thiamine monophos 29.5 1.6E+02 0.0035 25.6 5.9 47 119-169 24-72 (211)
478 PF15608 PELOTA_1: PELOTA RNA 29.4 2.6E+02 0.0056 21.4 6.9 60 40-111 25-88 (100)
479 PRK05402 glycogen branching en 29.4 41 0.0009 34.9 2.6 26 144-170 311-336 (726)
480 TIGR02826 RNR_activ_nrdG3 anae 29.1 1.3E+02 0.0028 24.5 5.0 52 115-169 44-95 (147)
481 cd01541 PBP1_AraR Ligand-bindi 28.7 2.4E+02 0.0052 24.4 7.2 39 99-140 25-63 (273)
482 cd03316 MR_like Mandelate race 28.6 4E+02 0.0086 24.7 9.0 48 117-168 250-297 (357)
483 PF13378 MR_MLE_C: Enolase C-t 28.4 51 0.0011 24.9 2.4 50 116-169 4-53 (111)
484 PRK05752 uroporphyrinogen-III 28.3 70 0.0015 28.3 3.6 60 82-142 3-65 (255)
485 PTZ00081 enolase; Provisional 27.9 1.5E+02 0.0033 28.9 6.1 49 116-168 334-382 (439)
486 PF00289 CPSase_L_chain: Carba 27.7 2.8E+02 0.0061 21.2 6.8 55 105-166 47-103 (110)
487 cd03320 OSBS o-Succinylbenzoat 27.6 2.8E+02 0.006 24.6 7.4 47 118-168 187-233 (263)
488 TIGR01515 branching_enzym alph 27.3 49 0.0011 33.7 2.7 26 144-170 202-227 (613)
489 cd06322 PBP1_ABC_sugar_binding 27.3 1.9E+02 0.004 25.0 6.2 62 99-168 25-87 (267)
490 TIGR02456 treS_nterm trehalose 27.2 48 0.001 33.1 2.6 26 144-170 72-97 (539)
491 TIGR00322 diphth2_R diphthamid 27.2 1.2E+02 0.0026 28.3 5.1 76 116-198 4-84 (332)
492 cd01542 PBP1_TreR_like Ligand- 27.1 2.3E+02 0.005 24.2 6.7 39 99-140 25-63 (259)
493 smart00481 POLIIIAc DNA polyme 26.9 2E+02 0.0044 19.3 5.9 47 114-166 12-58 (67)
494 PRK00077 eno enolase; Provisio 26.8 1.7E+02 0.0037 28.3 6.2 48 116-167 314-361 (425)
495 PRK08005 epimerase; Validated 26.6 1.4E+02 0.0031 25.9 5.2 87 99-192 102-191 (210)
496 PF04309 G3P_antiterm: Glycero 26.5 20 0.00044 30.3 -0.2 42 119-168 9-50 (175)
497 TIGR01060 eno phosphopyruvate 26.3 6E+02 0.013 24.5 10.7 80 83-167 279-362 (425)
498 PLN03244 alpha-amylase; Provis 26.2 59 0.0013 34.1 3.0 28 143-171 436-463 (872)
499 COG0366 AmyA Glycosidases [Car 26.0 54 0.0012 31.8 2.7 27 143-170 72-98 (505)
500 cd06292 PBP1_LacI_like_10 Liga 25.9 3.8E+02 0.0082 23.0 8.0 39 99-140 25-63 (273)
No 1
>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-71 Score=508.23 Aligned_cols=296 Identities=59% Similarity=1.028 Sum_probs=278.6
Q ss_pred CCccccccccccCCcCCccCCCCCCCcccccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCC
Q psy7357 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAH 80 (302)
Q Consensus 1 ~~~~p~~~~~~~~~~~ft~~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~ 80 (302)
|||||++++.++.+|||...|||||++..||.++++.++|++|++++|+|.+.+||.+||++|++.++++++|++.+|+.
T Consensus 76 MK~Np~~e~~~~~~p~f~~iHP~~pe~~vqG~l~li~~Lq~~L~~ITG~DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~ 155 (496)
T COG1003 76 MKLNPKAEMKPATWPEFANIHPFQPEEQVQGYLELIYELQEWLKEITGMDAVSLQPNAGAQGEYAGLLAIRAYHESRGEG 155 (496)
T ss_pred cccCchhhcccccccchhhcCCCCChHHHHHHHHHHHHHHHHHHHhcCCceeeccCCCCcchhhHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHH
Q psy7357 81 HRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHE 160 (302)
Q Consensus 81 ~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~ 160 (302)
.|++||||+++||+|++++.+.|++|+.|+++++|.+|+++|++++. ++++++|++|||+.|+++++|.+|++++|+
T Consensus 156 ~R~~~LIP~SAHGTNPASAam~G~~VV~V~~~~~G~VDlddLk~k~~---~~~AalMiTnPsT~GvFE~~I~ei~~ivH~ 232 (496)
T COG1003 156 HRNICLIPDSAHGTNPASAAMAGFKVVVVKCDENGNVDLDDLRAKAE---DNLAALMITNPSTLGVFEEDIREICEIVHE 232 (496)
T ss_pred cCcEEEeeccccCCChhhHhhcCceEEEEecCCCCCccHHHHHHHhc---cceeEEEeccCcccccchhhHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999 899999999999999998899999999999
Q ss_pred hCCEEEEecCCcccccccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCc----ccC------CC
Q psy7357 161 HGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHP----LSS------ID 230 (302)
Q Consensus 161 ~g~llivD~a~~~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~----~~~------~~ 230 (302)
+|++|++|+||.+++.++.+||++|+||++.++||||++|||+||||.|.+.+++++++++|+++ .+. ..
T Consensus 233 ~Gg~vY~DGANlNA~vG~~rPGd~G~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~~~ 312 (496)
T COG1003 233 AGGQVYYDGANLNAIVGLARPGDMGFDVVHLNLHKTFCIPHGGGGPGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYDGK 312 (496)
T ss_pred cCCEEEecCcchhhhhccccccccccceEEeecccccccCCCCCCCCCCceehHhhccccCCCCcccCCCccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999953 322 12
Q ss_pred CcchhhhHHHHhhHhhHHHHHHHHH-----------------------HHhcccccccccCCCcceeEEEEEEecccccc
Q psy7357 231 SSIGAVSAAHYGSASILPISWAYIR-----------------------RLESHYKTLFRSSRSGLVAHEFVIDVRDFKKS 287 (302)
Q Consensus 231 ~~l~~~~a~~~~~~~~~~~~~~y~~-----------------------~l~~g~~~~~~~~~~~~~~he~~~~~~~~~~~ 287 (302)
.+.+.++ ++|++++++.++|.|++ +|++.|+++|.+. ..|.|||++|.+++|++
T Consensus 313 ~s~g~~~-a~~Gs~~il~~a~~YI~~mG~~GL~~ase~AvLNANYia~rL~~~y~~~y~~~--~~~~HE~ild~r~l~~~ 389 (496)
T COG1003 313 KSIGVSA-APYGSASILPIAWAYIRMMGADGLKQASEVAVLNANYIARRLKGYYPVPYTGE--NRVAHECILDARPLKKE 389 (496)
T ss_pred ccceeec-cccCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhhcCccccCCC--CcceeEEEeechHhHhh
Confidence 3445555 79999999999998877 6767899999764 37899999999999999
Q ss_pred CCCCHHHHHHHhhcC
Q psy7357 288 ANIEAVDIAKRLMDY 302 (302)
Q Consensus 288 ~g~~~~~~~~~l~~~ 302 (302)
+|+++.||+|||+||
T Consensus 390 ~Gv~~~DvAKrLlD~ 404 (496)
T COG1003 390 TGVRALDVAKRLLDY 404 (496)
T ss_pred cCCcHHHHHHHHHhc
Confidence 999999999999997
No 2
>KOG2040|consensus
Probab=100.00 E-value=1.2e-60 Score=452.49 Aligned_cols=301 Identities=71% Similarity=1.224 Sum_probs=289.6
Q ss_pred CCccccccccccCCcCCccCCCCCCCcccccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCC
Q psy7357 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAH 80 (302)
Q Consensus 1 ~~~~p~~~~~~~~~~~ft~~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~ 80 (302)
||.|.......+.+|+|++.|||+|.|..||..|++.+++.+||+++|.|...++|+||+++|++.++++|+|+..+|++
T Consensus 549 MKLNsttEmmPiTwp~fanIHPF~P~eQaqGY~~lf~~Le~~Lc~iTG~D~~s~QPNsGA~GEYaGL~~IRaY~~~kge~ 628 (1001)
T KOG2040|consen 549 MKLNSTTEMMPITWPEFANIHPFAPVEQAQGYQQLFTELEKDLCEITGFDSFSLQPNSGAQGEYAGLRVIRAYLESKGEG 628 (1001)
T ss_pred eeccccceeccccchhhccCCCCCchHHHhhHHHHHHHHHHHhheeecccceeecCCCCcccchhhHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHH
Q psy7357 81 HRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHE 160 (302)
Q Consensus 81 ~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~ 160 (302)
.++..++|-++||+++++++++|++|+.|.++.+|.+|+.+|++..++|+++.+++|+++|++.|+++++|++++++.|+
T Consensus 629 hRnvClIPvSAHGTNPASA~MagmkvvpV~~~~~G~id~~dLk~kaekh~~~Laa~MvTYPST~GvfE~~i~d~cd~iHe 708 (1001)
T KOG2040|consen 629 HRNVCLIPVSAHGTNPASAAMAGMKVVPVGCDANGNIDMVDLKAKAEKHKDNLAALMVTYPSTHGVFEEGIDDICDIIHE 708 (1001)
T ss_pred cceeEEEeecccCCChhhHHhcCCEEEEeeccCCCCccHHHHHHHHHHhhhhhheeEEecccccccccccHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred hCCEEEEecCCcccccccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCccc-----CCCCcchh
Q psy7357 161 HGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLS-----SIDSSIGA 235 (302)
Q Consensus 161 ~g~llivD~a~~~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~~~-----~~~~~l~~ 235 (302)
||..|++|+|+..++.++.+||++|+||.+.++||||++|||+||||+|.|.+++++++++|+..|- +...+++.
T Consensus 709 hGGQVYlDGANMNAqVGlc~pGd~GaDV~HLNLHKTFcIPHGGGGPg~gPIgVK~HLapfLP~HpVvs~~~~~~~~~~gs 788 (1001)
T KOG2040|consen 709 HGGQVYLDGANMNAQVGLCRPGDIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSPGRPEDTSPVGS 788 (1001)
T ss_pred cCCEEEecCCCccceecccCCccccccceeecccceeeecCCCCCCCCCccchhhhccccCCCCCccCCCCCCCCCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999997663 24457899
Q ss_pred hhHHHHhhHhhHHHHHHHHH-----------------------HHhcccccccccCCCcceeEEEEEEeccccccCCCCH
Q psy7357 236 VSAAHYGSASILPISWAYIR-----------------------RLESHYKTLFRSSRSGLVAHEFVIDVRDFKKSANIEA 292 (302)
Q Consensus 236 ~~a~~~~~~~~~~~~~~y~~-----------------------~l~~g~~~~~~~~~~~~~~he~~~~~~~~~~~~g~~~ 292 (302)
++|+.|++.+++..+|+|++ ||+..++++|.+.. .+|-|||++|+++||+..|+++
T Consensus 789 VsaaP~Gsa~ILpISwaYikmMG~~GL~~as~~AiLNaNYMakRLe~hYkil~~~~~-~~vaHEFIlD~r~fK~~agiea 867 (1001)
T KOG2040|consen 789 VSAAPWGSALILPISWAYIKMMGSGGLKDASKIAILNANYMAKRLESHYKILFRGEN-GLVAHEFILDLRPFKKTAGIEA 867 (1001)
T ss_pred eeccCCCcceeehhHHHHHHHhcccccchhhHHHhhhhHHHHHHHhhccceeEecCC-cceeeeeeeechhhccccCCcH
Confidence 99999999999999999988 78788999999998 7999999999999999999999
Q ss_pred HHHHHHhhcC
Q psy7357 293 VDIAKRLMDY 302 (302)
Q Consensus 293 ~~~~~~l~~~ 302 (302)
.|++|||+||
T Consensus 868 vDvAKRL~DY 877 (1001)
T KOG2040|consen 868 VDVAKRLMDY 877 (1001)
T ss_pred HHHHHHHHhc
Confidence 9999999998
No 3
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=100.00 E-value=3e-59 Score=473.16 Aligned_cols=301 Identities=58% Similarity=1.013 Sum_probs=269.6
Q ss_pred CCccccccccccCCcCCccCCCCCCCcccccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCC
Q psy7357 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAH 80 (302)
Q Consensus 1 ~~~~p~~~~~~~~~~~ft~~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~ 80 (302)
||+||.+.+..++|+||..||||||++++||++|+++|+|+++|+++|||.+++++++||+||+++++++|.|++.+|+.
T Consensus 497 mk~na~v~~l~~s~~ef~t~hPyqPe~~sqG~lq~i~elq~~l~eltGmd~~Sl~p~aGA~gE~agL~aiR~y~~~rge~ 576 (939)
T TIGR00461 497 MKLNATAEMMPITWPEFSNIHPFQPSNQVEGYQELIAQLEKWLCSITGFDAISLQPNSGAQGEYAGLRVIRSYHESRGEN 576 (939)
T ss_pred CccCHHHHHHHhcchhhcCcCCCCchHHhHHHHHHHHHHHHHHHHHHCCCCcccCCchHHHHHHHHHHHHHHHHHhcCCC
Confidence 89999999998999999669999997799999999999999999999999999999999999988999999999888866
Q ss_pred CCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHH
Q psy7357 81 HRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHE 160 (302)
Q Consensus 81 ~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~ 160 (302)
++++|++|...||+++.++++.|++++.+|++++|.+|+++|++++++++++|++|++++||++|.+++|+++|+++||+
T Consensus 577 ~R~~vlip~saHgtnPasa~~~G~~Vv~V~~d~~G~iDle~L~~~i~~~~~~taaV~iT~pst~G~~e~~I~eI~~iah~ 656 (939)
T TIGR00461 577 HRNICLIPVSAHGTNPASAAMAGMQVVPVNCDQDGNIDLVDLKNKAEQHGDELAAVMVTYPSTHGVFEPTIQHACDIVHS 656 (939)
T ss_pred CCCEEEEEccccCcCHHHHHHCCCEEEEeccCCCCCcCHHHHHHHHhhcCCceEEEEEEeCCcCceecccHHHHHHHHHH
Confidence 78899999999999999999999999999999899999999999998666799999999999899998569999999999
Q ss_pred hCCEEEEecCCcccccccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCcccC------------
Q psy7357 161 HGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLSS------------ 228 (302)
Q Consensus 161 ~g~llivD~a~~~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~~~~------------ 228 (302)
+|+++++|++|+.++..+.+|+++|+|+++++.||||++|||+||||+|++++++++.+++||+.+++
T Consensus 657 ~G~~v~VDgAq~~al~~l~~Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L~~~lPg~~v~~t~d~~greq~Ig 736 (939)
T TIGR00461 657 FGGQVYLDGANMNAQVGLTSPGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLIPFLPKHDVVSMITGIGGSKSIG 736 (939)
T ss_pred cCCEEEEEecChhhCCCCCCccccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhhchhhcCCCcccccccCCCCccccc
Confidence 99999999999999998889999999999999999999999999999999999999999999998753
Q ss_pred ------CCCcchhhhHHHHhhHh----h---HHHHH---HHHH-HHhcccccccccCCCcceeEEEEEEeccccccCCCC
Q psy7357 229 ------IDSSIGAVSAAHYGSAS----I---LPISW---AYIR-RLESHYKTLFRSSRSGLVAHEFVIDVRDFKKSANIE 291 (302)
Q Consensus 229 ------~~~~l~~~~a~~~~~~~----~---~~~~~---~y~~-~l~~g~~~~~~~~~~~~~~he~~~~~~~~~~~~g~~ 291 (302)
.|+.++++++.+|+.++ + .+.+. +|++ +|+++++++|++.. ..|+|||++|++++++++|++
T Consensus 737 a~s~~~~g~a~~~l~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~~~~~l~~~~~-~~~~hEfv~~~~~~~~~~g~~ 815 (939)
T TIGR00461 737 SVSAAPYGSASILPISWMYIKMMGNEGLPKASVVAILNANYMATRLKDHYPILFVGTL-KHVAHECILDLRPLKAKTGIE 815 (939)
T ss_pred cccccccCcHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhccCcccccCCC-CceeEEEEEeccchhhhcCCC
Confidence 23344456666665542 2 22222 5666 78789999998755 567999999999999999999
Q ss_pred HHHHHHHhhcC
Q psy7357 292 AVDIAKRLMDY 302 (302)
Q Consensus 292 ~~~~~~~l~~~ 302 (302)
++||+|+|+||
T Consensus 816 ~~dIakrL~d~ 826 (939)
T TIGR00461 816 AIDVAKRLQDY 826 (939)
T ss_pred HHHHHHHHHhC
Confidence 99999999996
No 4
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=100.00 E-value=2.2e-56 Score=457.05 Aligned_cols=301 Identities=61% Similarity=1.098 Sum_probs=266.4
Q ss_pred CCccccccccccCCcCCccCCCCCCCcccccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCC
Q psy7357 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAH 80 (302)
Q Consensus 1 ~~~~p~~~~~~~~~~~ft~~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~ 80 (302)
|||||++++.++++|||++.|||||.+..||.++.++++++++++++|++.+.+++++|+++|++.++++++|++.+|+.
T Consensus 535 mk~n~~~~~~~~~~~~~~~~hp~~p~~~~~g~~~~~~~~r~~la~i~g~~~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~ 614 (993)
T PLN02414 535 MKLNATTEMMPVTWPEFANIHPFAPVDQAQGYQEMFEDLGDLLCEITGFDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDH 614 (993)
T ss_pred cccCchhhhhhhcCcchhhcCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEcCCCcHHHHHHHHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998765655
Q ss_pred CCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHH
Q psy7357 81 HRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHE 160 (302)
Q Consensus 81 ~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~ 160 (302)
++++||+|..+|++++..+.+.|++++.+|++++|.+|+++|++++++++++|++|++++||+.|.+++|+++|+++||+
T Consensus 615 ~r~~vli~~~aH~sn~a~a~~~G~~vv~v~~d~~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~I~eI~~iah~ 694 (993)
T PLN02414 615 HRNVCIIPVSAHGTNPASAAMCGMKIVVVGTDAKGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEGIDEICDIIHD 694 (993)
T ss_pred CCCEEEeCCCcCccCHHHHHHCCCEEEEeccCCCCCcCHHHHHHHHhccCCCeEEEEEECCCccccccchHHHHHHHHHH
Confidence 67799999999999999999999999999999999999999999999665689999999998767665479999999999
Q ss_pred hCCEEEEecCCcccccccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCcccCC--------CCc
Q psy7357 161 HGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLSSI--------DSS 232 (302)
Q Consensus 161 ~g~llivD~a~~~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~~~~~--------~~~ 232 (302)
+|+++++|++|+++++++.+|+++|+|+++++.||||+.|+|+||||+|++++++++.++|||+.++.+ ..+
T Consensus 695 ~Galv~vDgAq~~a~~~l~~p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~p~lPg~~v~~~~~~~~r~~~s~ 774 (993)
T PLN02414 695 NGGQVYMDGANMNAQVGLTSPGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPRPEKTQP 774 (993)
T ss_pred cCCEEEEEecCHHhccCcCCccccCCCEEEecCCccCCcCcccCCCCeeeEEEchhhcccCCCCccccCCCcccccCCCC
Confidence 999999999999999888899999999999999999999999999999999999999999999976431 123
Q ss_pred chhhhHHHHhhHhhHHHHH----------------------HHHH-HHhcccccccccCCCcceeEEEEEEeccccccCC
Q psy7357 233 IGAVSAAHYGSASILPISW----------------------AYIR-RLESHYKTLFRSSRSGLVAHEFVIDVRDFKKSAN 289 (302)
Q Consensus 233 l~~~~a~~~~~~~~~~~~~----------------------~y~~-~l~~g~~~~~~~~~~~~~~he~~~~~~~~~~~~g 289 (302)
+|.+.+++|++.+++..+| +|++ +|++++++.|.++. ++|||||+++++.+++++|
T Consensus 775 iGt~~~a~~g~al~l~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~~~~~~~~~~~-~~~~hEfv~~~~~l~~~~g 853 (993)
T PLN02414 775 LGTISAAPWGSALILPISYTYIAMMGSEGLTDASKIAILNANYMAKRLEGHYPVLFRGKN-GTCAHEFIIDLRPFKNTAG 853 (993)
T ss_pred cCCccchhhhhHHHHHHHHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHhhCCccccCCC-CCeeeeEEEeccccccccC
Confidence 4555544553333222222 4555 77778999998766 5789999999999998899
Q ss_pred CCHHHHHHHhhcC
Q psy7357 290 IEAVDIAKRLMDY 302 (302)
Q Consensus 290 ~~~~~~~~~l~~~ 302 (302)
++++|++|+|+||
T Consensus 854 ~~~~di~krL~d~ 866 (993)
T PLN02414 854 IEPEDVAKRLMDY 866 (993)
T ss_pred CCHHHHHHHHHHc
Confidence 9999999999986
No 5
>PRK12566 glycine dehydrogenase; Provisional
Probab=100.00 E-value=8e-56 Score=445.85 Aligned_cols=301 Identities=56% Similarity=0.984 Sum_probs=267.6
Q ss_pred CCccccccccccCCcCCccCCCCCCCcccccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCC
Q psy7357 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAH 80 (302)
Q Consensus 1 ~~~~p~~~~~~~~~~~ft~~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~ 80 (302)
|||||...+..++||||...|||||.|.+||++|.++|+|+++|+++|++.+++++++|++||+++++++|.|+..+|+.
T Consensus 510 mK~n~~~~~~p~s~~eF~t~hPyqp~e~sQG~lq~i~elq~~l~eLtGmd~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~ 589 (954)
T PRK12566 510 MKLNATSEMIPITWPEFAQLHPFAPREQAEGYRAMIDELEAWLCAITGFDAICMQPNSGAQGEYAGLLAIRRYHRSRGQS 589 (954)
T ss_pred cCcCcHHhhhcccchhhhcCCCCCchhhhcCHHHHHHHHHHHHHHHHCCCeEeecCCchHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999444999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHH
Q psy7357 81 HRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHE 160 (302)
Q Consensus 81 ~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~ 160 (302)
.+++||++...|++|+.++...|++++.+|+|++|.+|+++|+++++++++++++|++++||+.|.+++|+++|+++||+
T Consensus 590 ~r~~vLIp~saHgtNpasa~~~GieVv~Vp~D~~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~ 669 (954)
T PRK12566 590 QRDICLIPSSAHGTNPASAQMAGMRVVIVECDPDGNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVYEEGIREICEVVHQ 669 (954)
T ss_pred CCCEEEecccccccCHHHHHHCCCEEEEeccCCCCCcCHHHHHHHhhccCCCEEEEEEEecCcCceecchHHHHHHHHHH
Confidence 78999999999999999999999999999999899999999999998777899999999999888887579999999999
Q ss_pred hCCEEEEecCCcccccccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCc----ccC--------
Q psy7357 161 HGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHP----LSS-------- 228 (302)
Q Consensus 161 ~g~llivD~a~~~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~----~~~-------- 228 (302)
+|+++++|++|++++..+.+|+++|+||+++++||||+.|+|+|||++|++.+++++.+.+|+.. -|.
T Consensus 670 ~Galv~vDgA~~~a~~~l~~Pg~~GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P~~d~~G~~~r~ga~S 749 (954)
T PRK12566 670 HGGQVYMDGANLNAQVGLARPADIGADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPVVPVEGPDPNNGAVS 749 (954)
T ss_pred cCCEEEEEeeChhhccCCCChhhcCCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhccCCCCcCCCCCCCCCCcee
Confidence 99999999999999999988999999999999999999999999999999999996555554321 111
Q ss_pred ---CCCcchhhhHHHHhhHh---h---HHHHH---HHHH-HHhcccccccccCCCcceeEEEEEEeccccccCCCCHHHH
Q psy7357 229 ---IDSSIGAVSAAHYGSAS---I---LPISW---AYIR-RLESHYKTLFRSSRSGLVAHEFVIDVRDFKKSANIEAVDI 295 (302)
Q Consensus 229 ---~~~~l~~~~a~~~~~~~---~---~~~~~---~y~~-~l~~g~~~~~~~~~~~~~~he~~~~~~~~~~~~g~~~~~~ 295 (302)
.|++++.++|..|+..+ + ...+. +|++ +|++++++.|.++. +.|||||++++.++++.+|++++|+
T Consensus 750 ~~~~gsa~~l~~A~~Yi~~lG~eLk~aa~~ailnAnYla~rL~~~~~v~~~~~~-~~~~hEfii~~~~l~~~~g~~~~dv 828 (954)
T PRK12566 750 AAPWGSASILPISWMYIAMMGPQLADASEVAILSANYLANQLGGAFPVLYRGRN-ERVAHECILDLRPLKAQTGISEEDV 828 (954)
T ss_pred ecccchHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHhHhhCCCCcCCCC-CCeeeEEEEEccccccccCCCHHHH
Confidence 45666778888887753 2 12122 6877 78889999997655 5679999999999988889999999
Q ss_pred HHHhhcC
Q psy7357 296 AKRLMDY 302 (302)
Q Consensus 296 ~~~l~~~ 302 (302)
+|+|+||
T Consensus 829 akRL~d~ 835 (954)
T PRK12566 829 AKRLMDY 835 (954)
T ss_pred HHHHHHC
Confidence 9999985
No 6
>PRK05367 glycine dehydrogenase; Provisional
Probab=100.00 E-value=1.6e-54 Score=444.81 Aligned_cols=301 Identities=65% Similarity=1.122 Sum_probs=264.1
Q ss_pred CCccccccccccCCcCCccCCCCCCCcccccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCC
Q psy7357 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAH 80 (302)
Q Consensus 1 ~~~~p~~~~~~~~~~~ft~~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~ 80 (302)
|||||++++.++++|||++||||||.|++||.+++++++++++|+++|++.+.+++++|++||++++++++.|+..+|+.
T Consensus 509 ~~~~p~~~~~~~~~~~f~~~hP~qp~e~~qG~l~~i~e~q~~l~eltG~d~~sl~~~~ga~ge~agL~a~r~~~~~~G~~ 588 (954)
T PRK05367 509 MKLNAAAEMIPITWPEFANLHPFAPAEQAAGYRELIDQLEAWLAEITGYDAVSLQPNAGAQGEYAGLLAIRAYHESRGEG 588 (954)
T ss_pred CcCCHHHHHHHHhCccccccCCCChHHHHHHHHHHHHHHHHHHHHHHCCCCEEECccHHHHHHHHHHHHHHHHhhccCCC
Confidence 99999999999999999889999999999999999999999999999999999999999999999999999887666655
Q ss_pred CCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHH
Q psy7357 81 HRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHE 160 (302)
Q Consensus 81 ~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~ 160 (302)
++++|++|+..|++++..+.+.|++++.+|++.+|.+|+++|+++++++++++++|++++||+.|.+++|+++|+++||+
T Consensus 589 ~r~~vlis~~aH~snp~sa~~~G~~vv~v~~d~~G~iD~~~L~~~i~~~~~~la~V~it~pst~G~~e~~I~eI~~i~h~ 668 (954)
T PRK05367 589 HRDVCLIPSSAHGTNPASAVMAGMKVVVVACDENGNIDLDDLRAKAEEHADNLAAIMITYPSTHGVFEETIREICEIVHE 668 (954)
T ss_pred CCCEEEEEchhhhhhHHHHHHCCCEEEEECCCCCCCcCHHHHHHHHhccCCCeEEEEEEcCCCCeeecCCHHHHHHHHHH
Confidence 57789999999999999999999999999998889999999999998655679999999999889885489999999999
Q ss_pred hCCEEEEecCCcccccccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCcccCC--CCcchhhhH
Q psy7357 161 HGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLSSI--DSSIGAVSA 238 (302)
Q Consensus 161 ~g~llivD~a~~~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~~~~~--~~~l~~~~a 238 (302)
+|++++||+||..++.++.+|+++|+|++++++||||+.|||+|||++|++++++++.++|||++++.+ ..+.+.+.+
T Consensus 669 ~G~~v~VDgA~~~al~~l~~pg~~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~l~p~lpg~~v~~~~~~~~~g~v~t 748 (954)
T PRK05367 669 HGGQVYLDGANMNAQVGLARPGDIGADVSHLNLHKTFCIPHGGGGPGVGPIGVKAHLAPFLPGHPVQIAGGETGIGAVSA 748 (954)
T ss_pred cCCEEEEECcChhhccCCCChhhcCCCEEEecCcccCCCCcCCCCCceEEEeecccccccCCCCccCcCCCCCCcCcchh
Confidence 999999999999888888889999999999999999999999999999999999999999999987541 122334444
Q ss_pred HHHhhHhhHHHHHH----------------------HHH-HHhcccccccccCCCcceeEEEEEEeccccccCCCCHHHH
Q psy7357 239 AHYGSASILPISWA----------------------YIR-RLESHYKTLFRSSRSGLVAHEFVIDVRDFKKSANIEAVDI 295 (302)
Q Consensus 239 ~~~~~~~~~~~~~~----------------------y~~-~l~~g~~~~~~~~~~~~~~he~~~~~~~~~~~~g~~~~~~ 295 (302)
+.+++++++..+|. |++ +|++++++.|.++. ++++|||+++++.+++++|++++|+
T Consensus 749 a~~g~al~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~~~~~~~~~~-~~~~~e~i~~~~~~~~~~g~~~~di 827 (954)
T PRK05367 749 APFGSASILPISWMYIRMMGAEGLRQATEVAILNANYIAKRLKDHYPVLYTGAN-GRVAHECILDLRPLKESTGITVDDI 827 (954)
T ss_pred HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhhcCccccCCC-CCcccceEEEeecccccCCCCHHHH
Confidence 44544333333333 444 67778999998776 6889999999998888889999999
Q ss_pred HHHhhcC
Q psy7357 296 AKRLMDY 302 (302)
Q Consensus 296 ~~~l~~~ 302 (302)
+|+|+||
T Consensus 828 ~krL~d~ 834 (954)
T PRK05367 828 AKRLIDY 834 (954)
T ss_pred HHHHHHC
Confidence 9999986
No 7
>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.
Probab=100.00 E-value=2.6e-54 Score=406.24 Aligned_cols=268 Identities=32% Similarity=0.482 Sum_probs=203.1
Q ss_pred cccccccc-ccCCcCC-ccCCCCCCCcccccHHHHHHHHHHHHHHHhCCCeeeEeeCchH--HHHHHHHHHHHHHHHhhc
Q psy7357 3 LNATTEMI-PCSFPQL-TNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGA--QGEYAGLRAIQCYHQAQD 78 (302)
Q Consensus 3 ~~p~~~~~-~~~~~~f-t~~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga--~a~~a~l~a~~~~~~~~g 78 (302)
|+|+++++ +++|||| |+|||||| |+|||++|+++|+|+++|+|+|||.+|.++++|+ .|| +++|+.+..
T Consensus 78 ~~P~~i~~~i~~~~ef~TaYtPYQp-EisQG~Lq~lfe~Qs~i~eLTGmdvaNaSlyd~atA~aE-a~~ma~r~~----- 150 (429)
T PF02347_consen 78 YVPAVIDRNILSRPEFYTAYTPYQP-EISQGRLQALFEYQSMICELTGMDVANASLYDGATAAAE-AMLMAVRAT----- 150 (429)
T ss_dssp ---HHHHH-HHCCHHCCCS-STTSG-GGBHHHHHHHHHHHHHHHHHHTSSEE-SEBSSCCHHHHH-HHHHHHHHH-----
T ss_pred eeChhhcCccccChhhhccCCCCCc-HHHHHHHHHHHHHHHHHHHhhCCCccCCCCCChhHHHHH-HHHHHHHhc-----
Confidence 68888888 9999999 99999999 9999999999999999999999999888777665 556 888887753
Q ss_pred CCCCCEEEEcCCCCcccHH----HHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHH
Q psy7357 79 AHHRNVCLIPVSAHGTNPA----SAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDV 154 (302)
Q Consensus 79 ~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I 154 (302)
.+++++|++++..|+.+.. ++...|++++.+|.++++..| + +++++|++++||++|+++ |+++|
T Consensus 151 ~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~~~~~~~~~d--------~---~~~a~v~vq~Pn~~G~~e-d~~~i 218 (429)
T PF02347_consen 151 KRKRNKVLVPESLHPQTRAVLRTYAAPLGIEIVEVPLDEDGTTD--------D---DDTAAVMVQNPNTFGVFE-DIKEI 218 (429)
T ss_dssp TT---EEEEETTS-CHHHHHHHHHCCHCCEEEEEE-BBTTCSB---------S---TTEEEEEEESS-TTSB---THHHH
T ss_pred ccCCcEEEEcCCcChhhHHHHHHhhhhCCeEEEEecccccCCcc--------c---cCeEEEEeecCCCCceEe-eHHHH
Confidence 1345799999999999877 455789999999998888777 4 899999999999999999 79999
Q ss_pred HHHHHHhCCEEEEecCCcccccccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCcccC------
Q psy7357 155 CELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLSS------ 228 (302)
Q Consensus 155 ~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~~~~------ 228 (302)
++++|++|+++++ ++++++++.+.+|+++|+||++++ ||+|+.||++|||++|+++++++++++||||+||+
T Consensus 219 ~~~~h~~gal~~~-~ad~~aL~~l~~Pge~GADI~vg~-~Q~fg~p~~~GGP~~G~~a~~~~l~r~lPGRiVG~t~D~~G 296 (429)
T PF02347_consen 219 ADIAHAAGALVIV-GADPNALGGLKSPGEYGADIVVGE-HQTFGIPMGFGGPGAGFFAVREDLVRQLPGRIVGQTKDADG 296 (429)
T ss_dssp HHHHHHTT-EEEE-CGGCCGCCTC--GGGGT-SEEEEC-CTTTT---CCC-S--EEEEE-GGGGGGS-S-EEEEEEBCCC
T ss_pred HHHHHHcCCEEEE-ecCHHHHhCcCChhhcCccEEeeC-CCCCcccCCCCCCCeeeEEEhhhhhhhCCCceecccccccc
Confidence 9999999999976 999999999999999999999988 99999999999999999999999999999999974
Q ss_pred -------------------------CCCcchhhhHHHHhhHh----h---HHHHH---HHHH-HHhcccccccccCCCcc
Q psy7357 229 -------------------------IDSSIGAVSAAHYGSAS----I---LPISW---AYIR-RLESHYKTLFRSSRSGL 272 (302)
Q Consensus 229 -------------------------~~~~l~~~~a~~~~~~~----~---~~~~~---~y~~-~l~~g~~~~~~~~~~~~ 272 (302)
+||.|++++|++|+++. + ++.+. +|++ +|++-+...|.+++
T Consensus 297 ~~~~~ltLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~~~~~~~~~~~--- 373 (429)
T PF02347_consen 297 KRAFVLTLQTREQHIRREKATSNICTNQALLALAAAIYLAYLGPEGLREIAERIHLNAHYLAERLKKIYGLPFDNPF--- 373 (429)
T ss_dssp SCCEEEE-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTBECSSSSS---
T ss_pred cceeeeccccccccccccchhhhhhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCC---
Confidence 78999999999999964 3 44443 6877 77643566666666
Q ss_pred eeEEEEEEeccccccCCCCHHHHHHHhh
Q psy7357 273 VAHEFVIDVRDFKKSANIEAVDIAKRLM 300 (302)
Q Consensus 273 ~~he~~~~~~~~~~~~g~~~~~~~~~l~ 300 (302)
||||+++..+- .+..++.++.+
T Consensus 374 -f~e~v~~~~~~-----~~~~~l~~~~~ 395 (429)
T PF02347_consen 374 -FFEFVVVFSKD-----KEVEELLKRGI 395 (429)
T ss_dssp -BSSEEEEESS------HHHHHHHHTT-
T ss_pred -ceeeeeecCCc-----HHHHHHHHHHH
Confidence 99999987631 23444555544
No 8
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]
Probab=100.00 E-value=3.6e-50 Score=368.90 Aligned_cols=259 Identities=25% Similarity=0.367 Sum_probs=225.0
Q ss_pred ccccccc-cccCCcCC-ccCCCCCCCcccccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHH-HHHHHHHHHHHHHhhcC
Q psy7357 3 LNATTEM-IPCSFPQL-TNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGAQG-EYAGLRAIQCYHQAQDA 79 (302)
Q Consensus 3 ~~p~~~~-~~~~~~~f-t~~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a-~~a~l~a~~~~~~~~g~ 79 (302)
|+|++++ .++++||| |+|||||| |+|||.+|+++|+|+++|+|+||+.+|.+++++++| -+|++|+.|.. .
T Consensus 88 ~~P~vI~rnile~pewyTaYTPYQp-EISQGrLqaLfefQtlv~dLTGm~VANASm~DeaTAaAEAm~ma~r~~-----k 161 (450)
T COG0403 88 YTPPVILRNILENPEWYTAYTPYQP-EISQGRLEALFEFQTLVADLTGLDVANASMLDEATAAAEAMLMAKRVT-----K 161 (450)
T ss_pred cCcHHHHHHhhcCccccccCCCCch-hhhhHHHHHHHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHhh-----c
Confidence 7899999 99999999 99999999 999999999999999999999999999999998743 33888887642 1
Q ss_pred CCCCEEEEcCCCCcccHHH----HHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHH
Q psy7357 80 HHRNVCLIPVSAHGTNPAS----AQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVC 155 (302)
Q Consensus 80 ~~~d~Vlv~~~~hg~~~~~----~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~ 155 (302)
.++++++|+...|+.+... ++..|++++.++.+ |+++++++ ++ .++.+|++++||++|.+++|+++|.
T Consensus 162 ~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~-----d~~~l~~~-~~--~~~~gv~vQyP~~~G~~~~d~~~l~ 233 (450)
T COG0403 162 KKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDAD-----DLDDLESA-DD--GDVFGVLVQYPNTFGIVEEDLRALI 233 (450)
T ss_pred CcCceEEecCCCCHHHHHHHHhhcccCceEEEEeccc-----hhhhhhhc-cc--cCeEEEEEecCCCCCccchhHHHHH
Confidence 3478999999999888664 44678899888875 88888888 51 5899999999999996655899999
Q ss_pred HHHHHhCCEEEEecCCcccccccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCcccC-------
Q psy7357 156 ELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLSS------- 228 (302)
Q Consensus 156 ~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~~~~------- 228 (302)
+++|++|++++ -++++.+++.+.+|+++|+||++++ .|.|+.|++||||..||+++++++.|+||||++|+
T Consensus 234 ~~~h~~~al~~-v~aDplaL~LL~pPGe~GADIvvG~-~QrfGvPmgfGGPhag~fA~~~~~~R~mPGRlVG~S~D~~G~ 311 (450)
T COG0403 234 EAAHSAGALVI-VAADPLALGLLKPPGEFGADIVVGS-AQRFGVPMGFGGPHAGYFAVKDEFKRQMPGRLVGVSVDAAGK 311 (450)
T ss_pred HHHhhcCCEEE-EEechhHhhccCCccccCCceEEec-CcccCCCcCCCCcceeeeeEhHhHhhcCCCceeeeeecCCCC
Confidence 99999999885 6678999999999999999999999 57899999999999999999999999999999996
Q ss_pred ------------------------CCCcchhhhHHHHhhHh----h---HHHHH---HHHH-HHh---cccccccccCCC
Q psy7357 229 ------------------------IDSSIGAVSAAHYGSAS----I---LPISW---AYIR-RLE---SHYKTLFRSSRS 270 (302)
Q Consensus 229 ------------------------~~~~l~~~~a~~~~~~~----~---~~~~~---~y~~-~l~---~g~~~~~~~~~~ 270 (302)
+||.|.+++|++|+++. + +++.+ +|++ +|+ .|++++++ .|
T Consensus 312 ~A~rLaLQTREQHIRReKATSNICTnQaLlA~~As~y~~~hGp~GLk~iA~r~~~~a~~la~~L~~~~~g~~~~~~-~f- 389 (450)
T COG0403 312 RAFRLALQTREQHIRREKATSNICTNQALLALAASMYAVYHGPQGLKEIAERIHRLAAYLAAGLKEIGAGVELVFD-HF- 389 (450)
T ss_pred chhhhhHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhcCCceEeccc-cc-
Confidence 78999999999999964 3 33333 5766 787 37999876 67
Q ss_pred cceeEEEEEEec
Q psy7357 271 GLVAHEFVIDVR 282 (302)
Q Consensus 271 ~~~~he~~~~~~ 282 (302)
|.+|+++++
T Consensus 390 ---Fdt~~v~~~ 398 (450)
T COG0403 390 ---FDTFTVRVP 398 (450)
T ss_pred ---eeeEEEecc
Confidence 999999988
No 9
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=100.00 E-value=7.2e-46 Score=360.71 Aligned_cols=294 Identities=44% Similarity=0.752 Sum_probs=242.3
Q ss_pred CCccccccccccCCcCCccCCCCCCCcccccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCC
Q psy7357 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAH 80 (302)
Q Consensus 1 ~~~~p~~~~~~~~~~~ft~~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~ 80 (302)
|+|+|.+++.++++++|++||||||+..+||.+++++++++++++++|++.+.+.+++|+.++.+++.+++.+....|+.
T Consensus 80 ~~~~p~i~~~~~~~~~~~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~~~~~l~~~~GA~a~~~~l~~~r~~~~~~Gd~ 159 (481)
T PRK04366 80 MKYNPKINEKVARLPGFAELHPLQPEETVQGALELMYELQEWLKEITGMDAVTLQPAAGAHGELTGLLMIRAYHEARGDT 159 (481)
T ss_pred CCCCHHHHHHHHhCcchhcCCCCCChhhhhHHHHHHHHHHHHHHHHhCCCceEEEeCcHHHHHHHHHHHHHHHhhccCcC
Confidence 78999999999999999999999995599999999999999999999999888888888887745444455443222222
Q ss_pred CCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHH
Q psy7357 81 HRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHE 160 (302)
Q Consensus 81 ~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~ 160 (302)
++++|+++++.|+++...++..|++++.+|+++++.+|+++|+++++ ++|++|++++||++|.+..|+++|+++||+
T Consensus 160 ~~~~Vlv~~~~hp~~~~~~~~~G~~vv~v~~~~~~~~D~e~L~~~i~---~~t~~V~v~~Pn~tG~~~~dl~eI~~~a~~ 236 (481)
T PRK04366 160 KRTEVIVPDSAHGTNPASAAMAGFKVVEIPSNEDGLVDLEALKAAVG---EDTAALMLTNPNTLGLFERNILEIAEIVHE 236 (481)
T ss_pred CCCEEEEcCCccHhHHHHHHHcCCEEEEeecCCCCCcCHHHHHhhcc---cCCeEEEEeCCCCccccchHHHHHHHHHHH
Confidence 45699999999999998889999999999998889999999999998 789999999999999883379999999999
Q ss_pred hCCEEEEecCCcccccccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCcccC------------
Q psy7357 161 HGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLSS------------ 228 (302)
Q Consensus 161 ~g~llivD~a~~~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~~~~------------ 228 (302)
+|++++||++++.++.+..+|+++|+|++++++||+|+.|+|+|||++|++++++++.+++|+++++.
T Consensus 237 ~gal~iVD~a~~~~~~g~~~~~~~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~lp~~~v~~~g~~~~l~~~r~ 316 (481)
T PRK04366 237 AGGLLYYDGANLNAILGKARPGDMGFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEELAPFLPVPVVEKDGDRYRLDYDRP 316 (481)
T ss_pred cCCEEEEEecChhhhcccCCccccCCCEEEEechhhcCCCCCCCCCCeeeeeehhhhHhhCCCCeeeccCCceeeccccc
Confidence 99999999999877554458999999999999999999999999999999999999999999988752
Q ss_pred ---------CCCcchhhhHHHHhhHh----hH---HHHH---HHHH-HHhcccccccccCCCcceeEEEEEEeccccccC
Q psy7357 229 ---------IDSSIGAVSAAHYGSAS----IL---PISW---AYIR-RLESHYKTLFRSSRSGLVAHEFVIDVRDFKKSA 288 (302)
Q Consensus 229 ---------~~~~l~~~~a~~~~~~~----~~---~~~~---~y~~-~l~~g~~~~~~~~~~~~~~he~~~~~~~~~~~~ 288 (302)
++|.+++++|..|+... +. ++.. +|++ +|++-+++.+++++ +|||+++.+.+. ..
T Consensus 317 ~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~~~~~~~~~~~----~~~~~~~~~~~~-~~ 391 (481)
T PRK04366 317 KSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLKARLKDIYDLPYDRPC----MHEFVLSGKKLK-ET 391 (481)
T ss_pred ccCCCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCcccCCCCe----eEEEEEECcccc-cc
Confidence 23456667777777642 22 2222 4655 56532666665555 999999987553 34
Q ss_pred CCCHHHHHHHhhcC
Q psy7357 289 NIEAVDIAKRLMDY 302 (302)
Q Consensus 289 g~~~~~~~~~l~~~ 302 (302)
|+++.+++++|.++
T Consensus 392 g~~~~~v~~~L~~~ 405 (481)
T PRK04366 392 GVRTLDIAKRLLDY 405 (481)
T ss_pred CCCHHHHHHHHHHC
Confidence 78999999999874
No 10
>PRK12566 glycine dehydrogenase; Provisional
Probab=100.00 E-value=6e-47 Score=381.70 Aligned_cols=251 Identities=19% Similarity=0.242 Sum_probs=216.5
Q ss_pred cccccc-ccccCCcCC-ccCCCCCCCcccccHHHHHHHHHHHHHHHhCCCeeeEeeCchH--HHHHHHHHHHHHHHHhhc
Q psy7357 3 LNATTE-MIPCSFPQL-TNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGA--QGEYAGLRAIQCYHQAQD 78 (302)
Q Consensus 3 ~~p~~~-~~~~~~~~f-t~~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga--~a~~a~l~a~~~~~~~~g 78 (302)
|+|+++ +.+++|||| |+|||||| |+|||.+|+++|+|+++++|+|||.+|.+.++++ .|| |++|+.+.. +
T Consensus 92 ~~P~vi~~~i~~~~~~yTaYTPYQp-EisQG~Lqal~e~Qtmi~~LtGm~vaNASl~D~atA~aE-A~~ma~~~~---~- 165 (954)
T PRK12566 92 VTPTVILRNVLENPGWYTAYTPYQP-EIAQGRLEALLNFQQMTIDLTGLDLANASLLDEATAAAE-AMALAKRVA---K- 165 (954)
T ss_pred cCcHHHHHHHHhCchhhhcCCCCCc-hhhhHHHHHHHHHHHHHHHHhCchhhhhhhccchhHHHH-HHHHHHHHh---h-
Confidence 789999 999999999 99999999 9999999999999999999999999988888885 446 888876531 1
Q ss_pred CCCCCEEEEcCCCCcccHHH----HHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHH
Q psy7357 79 AHHRNVCLIPVSAHGTNPAS----AQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDV 154 (302)
Q Consensus 79 ~~~~d~Vlv~~~~hg~~~~~----~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I 154 (302)
.++++|+|++..|+.+... ++..|++++. +++++.++ +++++|++++||++|.++ |+++|
T Consensus 166 -~k~~~~~v~~~~hP~~~~v~~t~~~~~g~~i~~-----------~~~~~~~~---~~~~~v~vq~P~~~G~i~-d~~~i 229 (954)
T PRK12566 166 -SKSNRFFVDEHCHPQTLSVLRTRAEGFGFELVV-----------DAVDNLAA---HAVFGALLQYPDTHGEIR-DLRPL 229 (954)
T ss_pred -cCCCEEEECCCCCHHHHHHHHHhhhcCCcEEEE-----------cchhhcCC---CCEEEEEEECCCCceEEc-cHHHH
Confidence 2367899999998876653 4477888874 33455555 679999999999999998 89999
Q ss_pred HHHHHHhCCEEEEecCCcccccccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCcccC------
Q psy7357 155 CELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLSS------ 228 (302)
Q Consensus 155 ~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~~~~------ 228 (302)
.+++|++|+++ ++++++++++.+.+|+++|+||++++ +|.|+.|+++|||+.||+++++++.++||||++|+
T Consensus 230 ~~~~h~~gal~-~~~~d~laL~ll~~Pge~GADI~vG~-~Q~fGvp~~~GGP~ag~~a~~~~~~R~~PGRivG~s~D~~G 307 (954)
T PRK12566 230 IDQLHGQQALA-CVAADLLSLLVLTPPGELGADVVLGS-TQRFGVPMGYGGPHAAYFACRDDYKRAMPGRIIGVSRDARG 307 (954)
T ss_pred HHHHHHcCCEE-EEEeCHHHHhCCCChhhcCCcEEeeC-CCcCCCCCCCCCCCeeeeeehHHHHhhCCCCccceeecCCC
Confidence 99999999997 58889999999999999999999998 89999999999999999999999999999999986
Q ss_pred -------------------------CCCcchhhhHHHHhhHh----h---HHHHH---HHHH-HHh-cccccccccCCCc
Q psy7357 229 -------------------------IDSSIGAVSAAHYGSAS----I---LPISW---AYIR-RLE-SHYKTLFRSSRSG 271 (302)
Q Consensus 229 -------------------------~~~~l~~~~a~~~~~~~----~---~~~~~---~y~~-~l~-~g~~~~~~~~~~~ 271 (302)
+||.|++++|++|++.. + +++.+ +|++ +|+ .|++++++ +|
T Consensus 308 ~~a~~l~LqtREQHIRReKAtSNICT~qaL~A~~a~~Y~~~~Gp~Gl~~ia~~~~~~a~~l~~~l~~~g~~~~~~-~f-- 384 (954)
T PRK12566 308 NTALRMALQTREQHIRREKANSNICTAQVLLANIAGFYAVYHGPEGLKRIAQRVHRLTAILAAGLEAKGIKRLNR-HF-- 384 (954)
T ss_pred CeeeehhhhHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcCCccccC-Cc--
Confidence 78999999999999862 3 34333 5665 677 69999886 78
Q ss_pred ceeEEEEEEec
Q psy7357 272 LVAHEFVIDVR 282 (302)
Q Consensus 272 ~~~he~~~~~~ 282 (302)
|+||++++.
T Consensus 385 --F~~~~v~~~ 393 (954)
T PRK12566 385 --FDTLTLEVG 393 (954)
T ss_pred --cceEEEEcc
Confidence 999999984
No 11
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=100.00 E-value=7e-46 Score=375.94 Aligned_cols=267 Identities=19% Similarity=0.254 Sum_probs=224.5
Q ss_pred CCccccccccccCCcCC-ccCCCCCCCcccccHHHHHHHHHHHHHHHhCCCeeeEeeCchH--HHHHHHHHHHHHHHHhh
Q psy7357 1 MKLNATTEMIPCSFPQL-TNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGA--QGEYAGLRAIQCYHQAQ 77 (302)
Q Consensus 1 ~~~~p~~~~~~~~~~~f-t~~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga--~a~~a~l~a~~~~~~~~ 77 (302)
|||+|.+.+.++++||| |+|||||| |+|||.||+++++|+++++|+||+.+|.+.++++ .+| +++++.+.- +
T Consensus 76 ~~~p~~i~r~v~~~p~~~TaytPyQ~-EisQG~Le~l~e~Qt~i~eLtGm~~aNaSl~d~atA~aE-a~~~a~~~~---~ 150 (939)
T TIGR00461 76 TILPPVIQRNLLENPGWYTAYTPYQP-EISQGRLEALLNFQTVVSDLTGLPVANASLLDEGTAAAE-AMALSFNVS---K 150 (939)
T ss_pred CcCChHHHHHHHhCchhhhcCCCCCh-hhhhHHHHHHHHHHHHHHHHHCCChhhhhccchhhHHHH-HHHHHHHhh---c
Confidence 67778888799999998 99999999 8999999999999999999999999877766665 446 777765421 1
Q ss_pred cCCCCCEEEEcCCCCcccHH----HHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHH
Q psy7357 78 DAHHRNVCLIPVSAHGTNPA----SAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITD 153 (302)
Q Consensus 78 g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~ 153 (302)
+++++|+|++..|+.+.. +++..|++++.++ +++|++.+ ++++|++++||++|.++ |+++
T Consensus 151 --~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~v~~~~--------~~~l~~~~-----~~~~v~~q~Pn~~G~ie-d~~~ 214 (939)
T TIGR00461 151 --KKANKFFVAKDLHPQTKSVLHTRAKPFGIEVIVVD--------CSDIKKAV-----DVFGCLLQYPATDGSIL-DYKQ 214 (939)
T ss_pred --CCCCEEEECCCCCcchHHHHHHHHHhcCcEEEEEc--------HHHHhhcC-----CEEEEEEECCCCCeEEe-cHHH
Confidence 245899999999988764 3468899999874 34555443 57899999999999999 8999
Q ss_pred HHHHHHHhCCEEEEecCCcccccccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCcccC-----
Q psy7357 154 VCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLSS----- 228 (302)
Q Consensus 154 I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~~~~----- 228 (302)
|++++|++|+++++ ++++.++..+.+|+++|+||++++ ||+|+.|+++|||+.|++++++++.++||||++|.
T Consensus 215 i~~~~h~~gal~~~-~ad~~al~ll~~Pge~GaDi~vg~-~q~fg~p~g~GGP~aG~~a~~~~l~r~lPgrivG~s~D~~ 292 (939)
T TIGR00461 215 LIDALHSHKSLVSV-AADLMALTLLTPPGHYGADIVLGS-SQRFGVPMGYGGPHAAFFAVKDEYNRKMPGRIVGVSKDAL 292 (939)
T ss_pred HHHHHHHcCCEEEE-EechHHhCCcCCHHHcCCcEEeeC-CCccCCCCCCCCCceeeeeecHhhHhhCCCCceeEEecCC
Confidence 99999999999988 568899999999999999999887 89999999999999999999999999999999984
Q ss_pred --------------------------CCCcchhhhHHHHhhHh----h---HHHHH---HHHH-HHh-cccccccccCCC
Q psy7357 229 --------------------------IDSSIGAVSAAHYGSAS----I---LPISW---AYIR-RLE-SHYKTLFRSSRS 270 (302)
Q Consensus 229 --------------------------~~~~l~~~~a~~~~~~~----~---~~~~~---~y~~-~l~-~g~~~~~~~~~~ 270 (302)
+||.|++++|++|+... + +++.+ +|++ +|+ .|++++++ +|
T Consensus 293 G~~~~~l~LqtReqhIrRekAtSNICt~qaL~a~~a~~Y~~~~G~~GL~~iA~~~~~~a~~l~~~L~~~G~~~~~~-~f- 370 (939)
T TIGR00461 293 GNTALRLALQTREQHIRRDKATSNICTAQVLLANVASSYCVYHGPKGLKNIARRIHSLTSILANGLENDPHELINK-TW- 370 (939)
T ss_pred CCccceeecccccccccccccCcchhHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC-Cc-
Confidence 56888999999998853 3 33333 4655 676 69999886 78
Q ss_pred cceeEEEEEEeccccccCCCCHHHHHHHhhc
Q psy7357 271 GLVAHEFVIDVRDFKKSANIEAVDIAKRLMD 301 (302)
Q Consensus 271 ~~~~he~~~~~~~~~~~~g~~~~~~~~~l~~ 301 (302)
|+||+|+++. .+++++.++|++
T Consensus 371 ---F~~~~v~~~~------~~~~~i~~~~~~ 392 (939)
T TIGR00461 371 ---FDTLTVKVGN------GISSELLKAAEE 392 (939)
T ss_pred ---cceEEEEeCC------CCHHHHHHHHHH
Confidence 9999999862 468888888875
No 12
>PRK05367 glycine dehydrogenase; Provisional
Probab=100.00 E-value=5.3e-41 Score=345.10 Aligned_cols=266 Identities=18% Similarity=0.219 Sum_probs=215.3
Q ss_pred cccccc-ccccCCcCC-ccCCCCCCCcccccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHH-HHHHHHHHHHHHHhhcC
Q psy7357 3 LNATTE-MIPCSFPQL-TNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGAQG-EYAGLRAIQCYHQAQDA 79 (302)
Q Consensus 3 ~~p~~~-~~~~~~~~f-t~~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a-~~a~l~a~~~~~~~~g~ 79 (302)
|+|+++ +.++++|+| |+|||||| |+|||.+|+++++|+++++|+||+.+|++..+++++ .++++++++ +. .
T Consensus 89 ~~P~vi~~~i~~~~~~~t~ytPyQ~-EisQG~Leal~~~Qt~la~LtG~~~anaSl~d~aTAa~ea~~~a~~-~~----~ 162 (954)
T PRK05367 89 HTPPVILRNILENPAWYTAYTPYQP-EISQGRLEALLNFQTMVADLTGLEIANASLLDEATAAAEAMALAKR-VS----K 162 (954)
T ss_pred cCcHHHHHHHHhCcchhhccCCCCh-HHHHHHHHHHHHHHHHHHHHHCCChhhccccccHHHHHHHHHHhhh-hc----c
Confidence 899977 889999998 99999999 899999999999999999999999987776666532 337777654 21 0
Q ss_pred CCCCEEEEcCCCCcccHH----HHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHH
Q psy7357 80 HHRNVCLIPVSAHGTNPA----SAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVC 155 (302)
Q Consensus 80 ~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~ 155 (302)
+++++|++++..|+.+.. .++..|++|+.+|.+.+ ++ + +++.++++++||++|.++ |+++|+
T Consensus 163 ~~~~~vlv~~~~hP~~~~v~~t~a~~~G~ev~~~~~~~d----~~------~---~~~~~vlvq~p~~~G~i~-d~~~i~ 228 (954)
T PRK05367 163 SKSNRFFVDDDVHPQTLDVLRTRAEPLGIEVVVGDAAKA----LD------H---DDVFGVLLQYPGTSGEVR-DYTALI 228 (954)
T ss_pred CCCCEEEEcCccCHHHHHHHHHHHHhCCCEEEEecCccC----CC------c---ccEEEEEEecCCCCeeec-cHHHHH
Confidence 125899999999988765 34678999999997542 11 2 578889999999999999 899999
Q ss_pred HHHHHhCCEEEEecCCcccccccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCcccC-------
Q psy7357 156 ELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLSS------- 228 (302)
Q Consensus 156 ~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~~~~------- 228 (302)
++||++|+++++|+ +..+++.+.+|+++|+||+++++||+. .|+|+|||+.|++++++++.++||++++|.
T Consensus 229 ~~ah~~Gal~~vda-~~~Al~~l~~pge~GaDi~vgs~qkfg-~P~g~GGP~aGflavr~~~~r~lpgrivG~s~d~~g~ 306 (954)
T PRK05367 229 AAAHARGALVAVAA-DLLALTLLTPPGEMGADIAVGSAQRFG-VPMGFGGPHAAYFAVRDAYKRSMPGRIVGVSVDAAGN 306 (954)
T ss_pred HHHHHcCCEEEEEe-hhhhccCCCChhhcCCCEEEeeCcccC-CCCCCCCCCEEEEEECHHHHhhCCCCeeeeecccCCC
Confidence 99999999999986 456777778899999999999999866 999999999999999999999999999973
Q ss_pred ------------------------CCCcchhhhHHHHhhHh----h---HHHHH---HHHH-HHh-cccccccccCCCcc
Q psy7357 229 ------------------------IDSSIGAVSAAHYGSAS----I---LPISW---AYIR-RLE-SHYKTLFRSSRSGL 272 (302)
Q Consensus 229 ------------------------~~~~l~~~~a~~~~~~~----~---~~~~~---~y~~-~l~-~g~~~~~~~~~~~~ 272 (302)
++|.|.++.|++|+... + +++.. +|++ +|+ .|++++++ .+
T Consensus 307 ~~~~lalqtReqhiRrekaTsNict~qaL~a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~~G~~~~~~-~~--- 382 (954)
T PRK05367 307 PALRLALQTREQHIRREKATSNICTAQVLLAVMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRALGLEVVHD-SF--- 382 (954)
T ss_pred cccccccccccccccccccccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCcccCCC-CC---
Confidence 23456667777776632 2 23332 4655 676 58998764 56
Q ss_pred eeEEEEEEeccccccCCCCHHHHHHHhhcC
Q psy7357 273 VAHEFVIDVRDFKKSANIEAVDIAKRLMDY 302 (302)
Q Consensus 273 ~~he~~~~~~~~~~~~g~~~~~~~~~l~~~ 302 (302)
|++|.++++ .+++++.++|+++
T Consensus 383 -f~~~~~~~~-------~~~~~i~~~l~~~ 404 (954)
T PRK05367 383 -FDTLTVEVG-------GDAAAVLARALAA 404 (954)
T ss_pred -CCeEEEeCC-------CCHHHHHHHHHHC
Confidence 899999865 4789999999874
No 13
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=100.00 E-value=1.1e-38 Score=327.15 Aligned_cols=264 Identities=16% Similarity=0.188 Sum_probs=214.1
Q ss_pred ccccc-ccccCCcCC-ccCCCCCCCcccccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHH-HHHHHHHHHHHHHhhcCC
Q psy7357 4 NATTE-MIPCSFPQL-TNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGAQG-EYAGLRAIQCYHQAQDAH 80 (302)
Q Consensus 4 ~p~~~-~~~~~~~~f-t~~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a-~~a~l~a~~~~~~~~g~~ 80 (302)
.|+++ +.+++++|| |+|||||| |+|||.+|.++++|+++++|+|++.+|++.++++++ .++++++.+.- .+
T Consensus 117 ~P~~v~~~i~~~~~~~TaytPYqa-EisQG~lqal~~~Qt~ia~LtG~~~anaSL~d~aTAaaea~~~a~~~~-----~g 190 (993)
T PLN02414 117 VPPVILRNILENPGWYTQYTPYQA-EIAQGRLESLLNYQTMITDLTGLPMSNASLLDEGTAAAEAMAMCNNIL-----KG 190 (993)
T ss_pred CCHHHHHHHHhChHHHhhcCCCch-HHHHHHHHHHHHHHHHHHHHhCCChhhEeecCChHHHHHHHHHHHhcc-----cC
Confidence 55555 999999999 99999999 999999999999999999999999988887777643 33666665420 12
Q ss_pred CCCEEEEcCCCCcccHH----HHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHH
Q psy7357 81 HRNVCLIPVSAHGTNPA----SAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCE 156 (302)
Q Consensus 81 ~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ 156 (302)
++++|++++..|+.+.. .++..|++|+.+|.+. .| ..+ +.+.++++++||++|.+. |+++|++
T Consensus 191 ~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v~~~~---~~------~~~---~~v~~vlvq~P~~~G~v~-dv~~I~~ 257 (993)
T PLN02414 191 KKKKFLIASNCHPQTIDVCQTRADGLGLEVVVADEKD---FD------YSS---GDVCGVLVQYPATDGEVL-DYAEFVK 257 (993)
T ss_pred CCCEEEEcCccCHhHHHHHHHhhhhcCCEEEEecchh---hc------ccc---CceEEEEEecCCCCeEEc-CHHHHHH
Confidence 45889999999998865 3456799999998743 11 112 467888899999999999 8999999
Q ss_pred HHHHhCCEEEEecCCcccccccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCcccC--------
Q psy7357 157 LIHEHGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLSS-------- 228 (302)
Q Consensus 157 ia~~~g~llivD~a~~~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~~~~-------- 228 (302)
+||++|+++++ ++++++++.+.+|+++|+||+++++|||+ .|+|+|||+.|++++++++.+++|||++|.
T Consensus 258 ~ah~~GaL~iV-aad~lal~~l~~pge~GADi~vgsgqKwg-~P~G~GGP~aGflavr~~~~r~~PgriVG~s~d~~g~~ 335 (993)
T PLN02414 258 NAHANGVKVVM-ATDLLALTMLKPPGEWGADIVVGSAQRFG-VPMGYGGPHAAFLATSQEYKRLMPGRIIGVSVDSSGKP 335 (993)
T ss_pred HHHHcCCEEEE-EECHHHhcCCCCHhhccCcEEEECCCccc-cCCCCCCCCeeEEEECHHHHhhCCCcccCcccCCCCCc
Confidence 99999999998 88999999988899999999999999985 999999999999999999999999999874
Q ss_pred -----------------------CCCcchhhhHHHHhhH----hh---HHHHH---HHHH-HHh-cccccccccCCCcce
Q psy7357 229 -----------------------IDSSIGAVSAAHYGSA----SI---LPISW---AYIR-RLE-SHYKTLFRSSRSGLV 273 (302)
Q Consensus 229 -----------------------~~~~l~~~~a~~~~~~----~~---~~~~~---~y~~-~l~-~g~~~~~~~~~~~~~ 273 (302)
++|+|++..+++|++. ++ +++.. +|++ +|. .|+++.++ ++
T Consensus 336 ~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~Ia~ri~~la~~l~~~L~~~G~~~~~~-~~---- 410 (993)
T PLN02414 336 ALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFAAGLKKLGFQVQSL-PF---- 410 (993)
T ss_pred ccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhcCCccCCC-CC----
Confidence 3457777777777754 22 33332 4655 676 58998765 67
Q ss_pred eEEEEEEeccccccCCCCHHHHHHHhhc
Q psy7357 274 AHEFVIDVRDFKKSANIEAVDIAKRLMD 301 (302)
Q Consensus 274 ~he~~~~~~~~~~~~g~~~~~~~~~l~~ 301 (302)
|++|.++++ +.+++.++|++
T Consensus 411 f~~vt~~~~--------~~~~v~~~L~~ 430 (993)
T PLN02414 411 FDTVKVKCS--------DADAIADAAAK 430 (993)
T ss_pred cCeEEEecC--------CHHHHHHHHHH
Confidence 899999976 24788888875
No 14
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.8e-32 Score=248.35 Aligned_cols=246 Identities=20% Similarity=0.210 Sum_probs=194.2
Q ss_pred cccccHHHHHHHHH----HHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH----
Q psy7357 27 DQARGYEQLIGELE----TDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS---- 98 (302)
Q Consensus 27 e~sqG~l~~~~e~~----~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~---- 98 (302)
.+++|+ +++++++ ++.++|||++.+|++|.||++|++++++|+. ++||+|+..+..||.|...
T Consensus 62 RyYgGc-e~VD~vE~laierak~LFga~~anVQPhSGs~AN~av~~All--------~pGDtimgm~l~~GGHltHg~~v 132 (413)
T COG0112 62 RYYGGC-EYVDEVEELAIERAKKLFGAEYANVQPHSGSQANQAVYLALL--------QPGDTIMGLDLSHGGHLTHGSPV 132 (413)
T ss_pred cccCCC-eeHHHHHHHHHHHHHHHhCCCccccCCCCchHHHHHHHHHHc--------CCCCeEecccCCCCCcccCCCCC
Confidence 556665 7777766 5899999999999999999999999999987 7999999999989877542
Q ss_pred -HHhCCCEEEEeecCC-CCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCcccc-
Q psy7357 99 -AQMAGMSVEPVSVRK-DGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQ- 175 (302)
Q Consensus 99 -~~~~g~~v~~i~~~~-~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~- 175 (302)
....-++++.+|+|+ ++.||+|++++.+.+++|+ +|+... +.+-... |++++++||++.|+++++|.||..++
T Consensus 133 ~~sG~~~~~v~Y~vd~et~~IDyD~~~k~a~e~kPK--~ii~G~-SaY~r~i-d~~~~reIad~VGA~L~~DmAHiaGLV 208 (413)
T COG0112 133 NFSGKLFNVVSYGVDPETGLIDYDEVEKLAKEVKPK--LIIAGG-SAYSRPI-DFKRFREIADEVGAYLMVDMAHVAGLI 208 (413)
T ss_pred CccceeEEeEecccccccCccCHHHHHHHHHHhCCC--EEEECc-ccccccc-CHHHHHHHHHHhCceEEehHHHHHHHH
Confidence 122227899999985 6999999999999987665 455544 5444555 89999999999999999999996443
Q ss_pred --cccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeC-CCCCCCCCCcccC-CCCcchhhhHHHHhhHh-hHHHH
Q psy7357 176 --VGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKS-HLAPFLPVHPLSS-IDSSIGAVSAAHYGSAS-ILPIS 250 (302)
Q Consensus 176 --~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~-~l~~~lpg~~~~~-~~~~l~~~~a~~~~~~~-~~~~~ 250 (302)
+.+++|-.+ +|||++++||||. |||.|+|++++ ++.+++...+|+. ...+++++.|+...++. +++..
T Consensus 209 A~G~~p~P~~~-AdvVTtTTHKTlr------GPrGG~Il~~~eel~kkin~aVFPg~qggpl~HviAakaVa~~Eal~p~ 281 (413)
T COG0112 209 AGGVHPNPLPH-ADVVTTTTHKTLR------GPRGGIILTNDEELAKKINSAVFPGLQGGPLMHVIAAKAVAFKEALEPE 281 (413)
T ss_pred hcccCCCCCCc-cceEeCCcccCCC------CCCceEEEeccHHHHHHhhhhcCCccCCChHHHHHHHHHHHHHHHcChh
Confidence 445778777 9999999999998 89999999995 8999988877753 22345555556888876 44555
Q ss_pred -HHHHH-----------HHh-cccccccccCCCcceeEEEEEEeccccccCCCCHHHHHHHhh
Q psy7357 251 -WAYIR-----------RLE-SHYKTLFRSSRSGLVAHEFVIDVRDFKKSANIEAVDIAKRLM 300 (302)
Q Consensus 251 -~~y~~-----------~l~-~g~~~~~~~~~~~~~~he~~~~~~~~~~~~g~~~~~~~~~l~ 300 (302)
..|++ +|. .|++++.++++ +|+|+||+++ .|++++++.+.|-
T Consensus 282 fk~Ya~qVv~NAkaLAe~l~~~G~~vvsGgTd----nHl~lVDl~~----~~~~Gk~ae~~L~ 336 (413)
T COG0112 282 FKEYAKQVVKNAKALAEALKERGFKVVSGGTD----NHLVLVDLRS----KGLTGKKAEAALE 336 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCeEecCCcc----ceEEEEEccc----CCCCHHHHHHHHH
Confidence 37766 455 79999976555 9999999993 2688888888774
No 15
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=100.00 E-value=1.9e-31 Score=257.49 Aligned_cols=211 Identities=25% Similarity=0.371 Sum_probs=177.1
Q ss_pred CccccccccccCCcCC-ccCCCCCCCcccccHHHHHHHHHHHHHHHhCCCeeeEeeCchHH-HHHHHHHHHHHHHHhhcC
Q psy7357 2 KLNATTEMIPCSFPQL-TNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGAQ-GEYAGLRAIQCYHQAQDA 79 (302)
Q Consensus 2 ~~~p~~~~~~~~~~~f-t~~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~ 79 (302)
+++|..+...+.++++ ++|+||++ +.++|.++.+.|+++++++++|++..++..++|++ +.++++++++.
T Consensus 80 ~~~p~~~~~~~~~~~~~~~y~~~~~-~~~~g~~~~~~e~~~~la~l~g~~~~~v~~~~g~t~~~~~~~~a~~~------- 151 (447)
T PRK00451 80 HYIPAVVDHIISRSEFYTAYTPYQP-EISQGTLQAIFEYQTMICELTGMDVANASMYDGATALAEAALMAVRI------- 151 (447)
T ss_pred CcCcHHHHHHHhchhHHHhcCCCCC-ccchHHHHHHHHHHHHHHHHhCCCcceEEecCcHHHHHHHHHHHHHh-------
Confidence 5778888888888888 89999999 88999999999999999999999887776666664 34355555431
Q ss_pred CCCCEEEEcCCCCcccHHHHH----hCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHH
Q psy7357 80 HHRNVCLIPVSAHGTNPASAQ----MAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVC 155 (302)
Q Consensus 80 ~~~d~Vlv~~~~hg~~~~~~~----~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~ 155 (302)
.++++|+++++.|+++...++ ..|++++.+|++++ .+|+++++++++ ++|++|++++||++|.+. |+++|+
T Consensus 152 ~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~-~~d~~~l~~~i~---~~t~~v~l~~pn~tG~v~-~l~~I~ 226 (447)
T PRK00451 152 TKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYEDG-VTDLEALEAAVD---DDTAAVVVQYPNFFGVIE-DLEEIA 226 (447)
T ss_pred cCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecCCCC-CCCHHHHHHhcC---CCeEEEEEECCCCCCeeC-CHHHHH
Confidence 478899999999988876443 47999999999877 899999999998 789999999999999999 799999
Q ss_pred HHHHHhCCEEEEecCCcccccccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCccc
Q psy7357 156 ELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLS 227 (302)
Q Consensus 156 ~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~~~ 227 (302)
++||++|++++++ .+..+.+.+..|+++++|++++++|| |++|+.+||||+|++++++++++.+|.+++|
T Consensus 227 ~~a~~~~~~~iv~-~d~~~~g~~~~~~~~~~D~~~~s~~k-~~~~~~~~Gpg~G~l~~~~~~~~~~~~~~~g 296 (447)
T PRK00451 227 EIAHAGGALFIVG-VDPVSLGLLKPPGEYGADIVVGEGQP-LGIPLSFGGPYLGFFATRKKLVRQMPGRLVG 296 (447)
T ss_pred HHHHHCCCEEEEE-cChHHhccCCCcccCCCCEEEECCCc-CCCCCCCCCCCchHHHhhHHHHhhCCCCEee
Confidence 9999999999883 22345555556789999999999765 8999999999999999999988888766443
No 16
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=99.96 E-value=5.3e-28 Score=229.62 Aligned_cols=197 Identities=44% Similarity=0.705 Sum_probs=159.1
Q ss_pred CCccCCCCCCCcccccHHHHHHHHHHHHHHHhCCCe--eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCc
Q psy7357 16 QLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDK--ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHG 93 (302)
Q Consensus 16 ~ft~~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~--~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg 93 (302)
..+.|+||.| ..++|..+.++++++++++++|++. +.+..++|+.++ +++++++.. .+++|+|+++++.|+
T Consensus 47 ~~~~~~~~~~-~~~~g~~~~~~~~~~~la~~~g~~~~~v~~~~~g~~~~~-~~~~~~~~~-----~~~gd~Vl~~~~~h~ 119 (398)
T cd00613 47 FYTAYTPYQP-EISQGRLQALFELQTMLCELTGMDVANASLQDEATAAAE-AAGLAAIRA-----YHKRNKVLVPDSAHP 119 (398)
T ss_pred CcccCCCCCh-hhhhhHHHHHHHHHHHHHHHHCCCccceeccCchHHHHH-HHHHHHHhc-----ccCCCEEEEcCccCc
Confidence 3478888887 7789999999999999999999974 333333333445 333333210 024899999999999
Q ss_pred ccHHHHHhCC----CEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEec
Q psy7357 94 TNPASAQMAG----MSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDG 169 (302)
Q Consensus 94 ~~~~~~~~~g----~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~ 169 (302)
++.......| ++++.+|.++++.+|+++++++++ ++|++|++++||++|.+.+.+++|+++|+++|+++|+|+
T Consensus 120 ~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~---~~t~~viv~~~~~~G~~~~~l~~i~~la~~~g~~livD~ 196 (398)
T cd00613 120 TNPAVARTRGEPLGIEVVEVPSDEGGTVDLEALKEEVS---EEVAALMVQYPNTLGVFEDLIKEIADIAHSAGALVYVDG 196 (398)
T ss_pred chHHHHHHhcccCCcEEEEeccCCCCCcCHHHHHHhcC---CCeEEEEEECCCCCceecchHHHHHHHHHhcCCEEEEEe
Confidence 9987666555 999999987778899999999997 789999999999889997335999999999999999999
Q ss_pred CCcccccccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCC
Q psy7357 170 ANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVH 224 (302)
Q Consensus 170 a~~~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~ 224 (302)
++.... ...+++.+++|++++++||++ +|+++|||++|++++++++.+.+++.
T Consensus 197 ~~~~~~-~~~~~~~~~~d~~~~s~~K~~-~p~g~Ggp~~g~l~~~~~~~~~~~~~ 249 (398)
T cd00613 197 DNLNLT-GLKPPGEYGADIVVGNLQKTG-VPHGGGGPGAGFFAVKKELVRFLPGR 249 (398)
T ss_pred cccccc-CCCChHHcCCCEEEeeccccC-CCCCCCCCceeEEEEhhhhHhhCCCC
Confidence 875444 334677889999999999999 99999999999999998888877654
No 17
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=99.96 E-value=3.8e-29 Score=235.03 Aligned_cols=244 Identities=22% Similarity=0.239 Sum_probs=166.0
Q ss_pred cccHHHHHHHHH----HHHHHHhCCC----eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH---
Q psy7357 29 ARGYEQLIGELE----TDLCEITGYD----KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA--- 97 (302)
Q Consensus 29 sqG~l~~~~e~~----~~l~~l~g~~----~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~--- 97 (302)
+.|-.+.+++++ ++++++||++ .++++|.||+.|++++++|+. ++||+|+..+..||.|..
T Consensus 57 yy~G~~~id~iE~la~~ra~~lF~~~~~~w~anvqp~SGs~An~av~~aLl--------~pGD~Im~l~l~~GGHlshg~ 128 (399)
T PF00464_consen 57 YYGGCEYIDEIEELAIERAKELFGAEPKEWYANVQPHSGSQANLAVYMALL--------KPGDTIMGLSLPHGGHLSHGS 128 (399)
T ss_dssp SSSSTHHHHHHHHHHHHHHHHHHT-STTTEEEE---SSHHHHHHHHHHHHT---------TT-EEEEEEGGGT--GGGT-
T ss_pred cccCcchhhHHHHHHHHHHHHHhCCCcccceEEeecCCchHHHHHHHHHHH--------hhcCcEEecChhhcccccccc
Confidence 333347776644 6899999999 999999999999989999887 789999999988887643
Q ss_pred H--H-----HhCCCEEEEeecC-CCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEec
Q psy7357 98 S--A-----QMAGMSVEPVSVR-KDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDG 169 (302)
Q Consensus 98 ~--~-----~~~g~~v~~i~~~-~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~ 169 (302)
. . ....++++.+++| +++.||+|++++.+.+++|+ +|++.. +.+-... |++++++||++.|+++++|.
T Consensus 129 ~~~~~~~~~~~~~~~~~~y~~d~~~~~ID~d~l~~~a~~~kPk--lIi~G~-S~y~~~~-d~~~~reIad~vga~l~~D~ 204 (399)
T PF00464_consen 129 SVNFKKISASGLYFESVPYPVDPDTGLIDYDELEKLAKEHKPK--LIICGA-SSYPRPI-DFKRFREIADEVGAYLMADI 204 (399)
T ss_dssp TTSHSBSSHHHHHSEEEEEEB-TTTSSB-HHHHHHHHHHH--S--EEEEE--SSTSS----HHHHHHHHHHTT-EEEEE-
T ss_pred cccccccccccceEEEEeeeeecCCCeECHHHHHHHHhhcCCC--EEEECc-hhccCcc-CHHHHHHHHHhcCcEEEecc
Confidence 1 1 3345799999998 46899999999999987665 465555 4433444 89999999999999999999
Q ss_pred CCcccc---cccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEe--------------CCCCCCCCCCcccC--CC
Q psy7357 170 ANMNAQ---VGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVK--------------SHLAPFLPVHPLSS--ID 230 (302)
Q Consensus 170 a~~~~~---~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~--------------~~l~~~lpg~~~~~--~~ 230 (302)
+|..++ +.+++|-++ +||+++++||||. ||+.|+|+++ +++.++|...+++. ++
T Consensus 205 sH~~GLIa~g~~~~P~~~-ADvvt~sThKtl~------GPrggiI~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~ 277 (399)
T PF00464_consen 205 SHIAGLIAGGLFPNPFPY-ADVVTGSTHKTLR------GPRGGIILTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGG 277 (399)
T ss_dssp TTTHHHHHTTSS--GCCT-SSEEEEESSGGG-------SSS-EEEEES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS
T ss_pred cccccceehheecCcccc-ceEEEeecccccc------ccCceEEEEcCCccccCCcccccHHHHHHHhccccCCCcccC
Confidence 996444 445778876 9999999999998 8999999999 56777765555432 55
Q ss_pred CcchhhhHHHHhhHhhH-HH-HHHHHH-----------HHh-cccccccccCCCcceeEEEEEEeccccccCCCCHHHHH
Q psy7357 231 SSIGAVSAAHYGSASIL-PI-SWAYIR-----------RLE-SHYKTLFRSSRSGLVAHEFVIDVRDFKKSANIEAVDIA 296 (302)
Q Consensus 231 ~~l~~~~a~~~~~~~~~-~~-~~~y~~-----------~l~-~g~~~~~~~~~~~~~~he~~~~~~~~~~~~g~~~~~~~ 296 (302)
..++.++ +...++..+ .. ...|++ .|. .|+++++++++ +|+++||+++ .|+++.+++
T Consensus 278 ~h~~~ia-alAval~ea~~~~fk~Ya~qVv~NAk~La~~L~~~G~~v~~ggTd----~H~vlvd~~~----~~~~g~~a~ 348 (399)
T PF00464_consen 278 PHMHRIA-ALAVALKEALSPEFKEYAKQVVKNAKALAEALQERGFKVVTGGTD----NHQVLVDLRS----FGIDGKEAE 348 (399)
T ss_dssp --HHHHH-HHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT-EEGGGS-S----SSEEEEEGGG----GTS-HHHHH
T ss_pred cchhHHH-HHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhCCcEEEECCCC----CCeEEEEecc----cccchHHHH
Confidence 6666776 455555422 22 236766 455 69999986555 9999999985 368899998
Q ss_pred HHhh
Q psy7357 297 KRLM 300 (302)
Q Consensus 297 ~~l~ 300 (302)
++|-
T Consensus 349 ~~Le 352 (399)
T PF00464_consen 349 KALE 352 (399)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8874
No 18
>PLN02271 serine hydroxymethyltransferase
Probab=99.96 E-value=4.1e-27 Score=227.03 Aligned_cols=257 Identities=18% Similarity=0.134 Sum_probs=179.2
Q ss_pred CC-ccCCCCCCCcccccHHHHHHHHH----HHHHHHhCCCe----eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEE
Q psy7357 16 QL-TNMHPFIPQDQARGYEQLIGELE----TDLCEITGYDK----ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCL 86 (302)
Q Consensus 16 ~f-t~~~py~p~e~sqG~l~~~~e~~----~~l~~l~g~~~----~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vl 86 (302)
.| ..|.-..|...+.|-.+.+++++ ++.+++||++. +|++|+||+.|++++++++. +++|+|+
T Consensus 171 ~ltnkYaEG~pG~Ryy~G~~~iD~iE~la~era~~lF~~~~~~~gaNVQp~SGs~AN~aV~~ALl--------~PGD~IL 242 (586)
T PLN02271 171 HLTNKYSEGMPGARYYTGNQYIDQIERLCCERALAAFGLDSEKWGVNVQPYSCTSANFAVYTGLL--------LPGDRIM 242 (586)
T ss_pred cccccCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHhCCcccccccceeeccHHHHHHHHHHHhc--------CCCCEEE
Confidence 45 33433334444444457777765 68889999887 89999999999989988875 7999999
Q ss_pred EcCCCCcccHHH---------HHhCCCE--EEEeecC-CCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHH
Q psy7357 87 IPVSAHGTNPAS---------AQMAGMS--VEPVSVR-KDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDV 154 (302)
Q Consensus 87 v~~~~hg~~~~~---------~~~~g~~--v~~i~~~-~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I 154 (302)
..+..||.|... +...|.. ++.++++ ++|.+|+++|++.+.+ .++++|++...++. ... |+++|
T Consensus 243 ~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~~g~IDyd~lek~a~~--~rPKLII~g~Sayp-r~~-D~~~i 318 (586)
T PLN02271 243 GLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQTGYIDYDKLEEKALD--FRPKILICGGSSYP-REW-DYARF 318 (586)
T ss_pred EecCCCCCchhcccccccccccccccceEEEEEcccccccCccCHHHHHHHhhh--cCCeEEEECchhcc-CcC-CHHHH
Confidence 999999988542 1344644 4444565 4689999999995543 67888888663332 445 89999
Q ss_pred HHHHHHhCCEEEEecCCccccccc---CCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC--------
Q psy7357 155 CELIHEHGGQVYLDGANMNAQVGL---CRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV-------- 223 (302)
Q Consensus 155 ~~ia~~~g~llivD~a~~~~~~~~---~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg-------- 223 (302)
++||+++|+++++|++|..++... .+|.. ++|++++++||||. ||+.|+|+++++..+.+.|
T Consensus 319 ~eIAdevGA~LmvD~AH~aGLIa~g~~~sP~~-~aDvvt~TTHKtLr------GPrGG~I~~r~~~~~~~~g~~gs~s~~ 391 (586)
T PLN02271 319 RQIADKCGAVLMCDMAHISGLVAAKECVNPFD-YCDIVTSTTHKSLR------GPRGGIIFYRKGPKLRKQGMLLSHGDD 391 (586)
T ss_pred HHHHHHcCCEEEEECcccccccccCcCCCCCc-CCcEEEeCCcccCC------CCCceEEEecccccccccCCccccccc
Confidence 999999999999999997666532 34544 59999999999998 7877999998653322222
Q ss_pred ------------CcccC--CCCcchhhhHHHHhhHhh-HHHH-HHHHH-----------HHh-cccccccccCCCcceeE
Q psy7357 224 ------------HPLSS--IDSSIGAVSAAHYGSASI-LPIS-WAYIR-----------RLE-SHYKTLFRSSRSGLVAH 275 (302)
Q Consensus 224 ------------~~~~~--~~~~l~~~~a~~~~~~~~-~~~~-~~y~~-----------~l~-~g~~~~~~~~~~~~~~h 275 (302)
.+++. ++...+.++ +...++.. .... ..|++ .|. .||+++.+|++ +|
T Consensus 392 ~~~~d~~~kI~~aVfPglqgGphn~~IA-alAvalkea~~~efk~Ya~QVv~NAkaLA~~L~~~G~~vv~ggTd----nH 466 (586)
T PLN02271 392 NSHYDFEEKINFAVFPSLQGGPHNNHIA-ALAIALKQVATPEYKAYMQQVKKNAQALASALLRRKCRLVTGGTD----NH 466 (586)
T ss_pred cccHHHHHHhhcccCCccccChhHHHHH-HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHCCCeEeeCCCC----cc
Confidence 22211 222233333 45555442 1222 36665 454 79999986555 99
Q ss_pred EEEEEeccccccCCCCHHHHHHHhh
Q psy7357 276 EFVIDVRDFKKSANIEAVDIAKRLM 300 (302)
Q Consensus 276 e~~~~~~~~~~~~g~~~~~~~~~l~ 300 (302)
+++||+++ .|++++++.++|-
T Consensus 467 lvLvDl~~----~g~~G~~ae~~Le 487 (586)
T PLN02271 467 LLLWDLTT----LGLTGKNYEKVCE 487 (586)
T ss_pred eeeecCcc----cCCCHHHHHHHHH
Confidence 99999985 3688888888774
No 19
>KOG2040|consensus
Probab=99.95 E-value=2.7e-27 Score=225.91 Aligned_cols=202 Identities=19% Similarity=0.292 Sum_probs=162.6
Q ss_pred ccccc-ccccCCcCC-ccCCCCCCCcccccHHHHHHHHHHHHHHHhCCCeeeEeeC-chHHHHHHHHHHHHHHHHhhcCC
Q psy7357 4 NATTE-MIPCSFPQL-TNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPN-SGAQGEYAGLRAIQCYHQAQDAH 80 (302)
Q Consensus 4 ~p~~~-~~~~~~~~f-t~~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~~~~~~~-~Ga~a~~a~l~a~~~~~~~~g~~ 80 (302)
+|.++ ..++..|+| |+|||||| |+|||.+|.+-.+|+++++++|++.+|.+.- .|+.|.+|+.++.+. +
T Consensus 132 vP~~I~RNilenp~W~TqYTPYQ~-EIsQGRLEsllNyQTmi~dlTGL~~aNASLLDEgTAaaEAm~l~~~~-------~ 203 (1001)
T KOG2040|consen 132 VPAVILRNILENPGWYTQYTPYQA-EISQGRLESLLNYQTMITDLTGLPMANASLLDEGTAAAEAMALCNRI-------N 203 (1001)
T ss_pred CcHHHHHHhhhCCcceeccCCCch-hhhhhhHHHHhhhHHhhhhccCCcccchhhhccchhHHHHHHHHHhh-------c
Confidence 34443 347888999 99999999 9999999999999999999999998766533 344333377776653 5
Q ss_pred CCCEEEEcCCCCcccHHHHH----hCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHH
Q psy7357 81 HRNVCLIPVSAHGTNPASAQ----MAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCE 156 (302)
Q Consensus 81 ~~d~Vlv~~~~hg~~~~~~~----~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ 156 (302)
++++.++....|+.+...++ ..|++++. .|+++..... +++.+|++++|++.|.+. |..++.+
T Consensus 204 krkk~vvd~~~hpqtlsV~~TRa~~~~i~v~~--------~~~~~~~~s~----~~v~gvlvQYP~t~G~i~-d~~el~~ 270 (1001)
T KOG2040|consen 204 KRKKFVVDSNCHPQTLSVVKTRAKGFGIKVVV--------SDIKEADYSS----KDVSGVLVQYPDTEGSVL-DFDELVE 270 (1001)
T ss_pred ccceEEecCCCCcchhhhhhccccccceeEEe--------cCHHHhhccc----cceeEEEEEcCCCCCccc-CHHHHHH
Confidence 77788999889988877654 23334322 2333332222 568999999999999999 8999999
Q ss_pred HHHHhCCEEEEecCCcccccccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCcccC
Q psy7357 157 LIHEHGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLSS 228 (302)
Q Consensus 157 ia~~~g~llivD~a~~~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~~~~ 228 (302)
.+|+.|.+++ -+.+..++-.+.+|+++|+||++++ .|-|+.|+|.|||..||+++++++.+.||||++|.
T Consensus 271 ~a~~~~s~vv-~atDLLaLtiLrpPgefGaDIavGS-sQRFGVPlGYGGPHAaFfAv~~~l~R~mPGRiiGv 340 (1001)
T KOG2040|consen 271 LAHANGSLVV-MATDLLALTILRPPGEFGADIAVGS-SQRFGVPLGYGGPHAAFFAVSESLVRMMPGRIIGV 340 (1001)
T ss_pred HhhccCceEE-EeehhhHHHccCChhhcCceeeecc-ccccCccccCCCchHHHHHHHHHHHhhCCCceEee
Confidence 9999999975 4457788888899999999999999 57799999999999999999999999999999985
No 20
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.9e-24 Score=205.47 Aligned_cols=185 Identities=20% Similarity=0.267 Sum_probs=150.5
Q ss_pred ccccHHHHHHHHHHHHHHHhCCCe-eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhC
Q psy7357 28 QARGYEQLIGELETDLCEITGYDK-ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMA 102 (302)
Q Consensus 28 ~sqG~l~~~~e~~~~l~~l~g~~~-~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~ 102 (302)
.++-..+.+++.|+.+++++|++. .++..+.|++ + +..+.+..+... ..+||+||+++.+|+++.. .++..
T Consensus 60 ~~~~~t~~~e~aRe~va~~~~a~~~~eIvft~~tT-~-aln~va~~l~~~--~~~gdeIv~s~~EH~sn~~pw~~~~~~~ 135 (405)
T COG0520 60 LAEEATDLYEAAREAVARFLNADSSDEIVFTRGTT-E-ALNLVARGLGRS--LKPGDEIVVSDLEHHSNIVPWQELAKRT 135 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChh-H-HHHHHHHHhhhh--hcCCCEEEEccCcchhhHHHHHHHHHhc
Confidence 455667799999999999999984 6666666653 1 223323322100 1578999999999998854 45577
Q ss_pred CCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCC
Q psy7357 103 GMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRP 181 (302)
Q Consensus 103 g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p 181 (302)
|++++++|++++|.+|++++++.++ ++|++|.+++- |.+|++. |+++|+++||++|++++||++|..+...+ +.
T Consensus 136 Ga~v~~i~~~~~g~~~~~~~~~~i~---~~Tklvais~vSn~tG~~~-pv~~I~~la~~~ga~v~VDaaq~~~h~~i-dv 210 (405)
T COG0520 136 GAKVRVIPLDDDGLLDLDALEKLIT---PKTKLVALSHVSNVTGTVN-PVKEIAELAHEHGALVLVDAAQAAGHLPI-DV 210 (405)
T ss_pred CcEEEEEecCCCCCcCHHHHHHhcC---CCceEEEEECccccccccc-hHHHHHHHHHHcCCEEEEECccccCccCC-Cc
Confidence 9999999999899999999999998 89999999984 7899999 79999999999999999999997777654 66
Q ss_pred CccCCcEEEeCCCcccCCCCCCCCC-cceeEEEeCCCCCCCCCCccc
Q psy7357 182 GDYGSDVSHLNLHKTFCIPHGGGGP-GMGPIGVKSHLAPFLPVHPLS 227 (302)
Q Consensus 182 ~~~gaDiv~~~~hK~l~~p~~~gGp-~~G~l~~~~~l~~~lpg~~~~ 227 (302)
.++++|++++|+||||. || |+|++++++++.+.|+....|
T Consensus 211 ~~l~~Df~afsgHKwl~------gP~GiGvLy~r~~~l~~l~P~~~g 251 (405)
T COG0520 211 QELGCDFLAFSGHKWLL------GPTGIGVLYVRKELLEELEPFLGG 251 (405)
T ss_pred hhcCCCEEEEccccccc------CCCceEEEEEchHHHhhcCCcccC
Confidence 78999999999999997 56 899999999999988554443
No 21
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=99.92 E-value=1.2e-23 Score=202.11 Aligned_cols=251 Identities=18% Similarity=0.166 Sum_probs=172.3
Q ss_pred cccHHHHHHHHH----HHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHH------HH-----------------hhcCCC
Q psy7357 29 ARGYEQLIGELE----TDLCEITGYDKISFQPNSGAQGEYAGLRAIQCY------HQ-----------------AQDAHH 81 (302)
Q Consensus 29 sqG~l~~~~e~~----~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~------~~-----------------~~g~~~ 81 (302)
+.|-.+.+++++ ++.+++||++++|++|.||+.|++++++++..- ++ .|..-.
T Consensus 86 yy~g~~~~d~ie~l~~~ra~~lf~a~~anvqp~Sg~~An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~ 165 (493)
T PRK13580 86 FYAGCQNVDTVEWEAAEHAKELFGAEHAYVQPHSGADANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELG 165 (493)
T ss_pred ccCCCchHHHHHHHHHHHHHHHhCCCcccccCCCcHHHHHHHHHHHhcccccCcchhccccccccccchhhhhhhhccCC
Confidence 334336666665 588999999999999999999999999988721 00 000001
Q ss_pred CCEEEEcCCCCcccHH-----HHHhCCCEEEEeecCC-CCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHH
Q psy7357 82 RNVCLIPVSAHGTNPA-----SAQMAGMSVEPVSVRK-DGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVC 155 (302)
Q Consensus 82 ~d~Vlv~~~~hg~~~~-----~~~~~g~~v~~i~~~~-~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~ 155 (302)
+|+|+..+..+|.|.. ......++++.+++++ +|.+|++++++.++ +++..|+++..+.++... |+++|+
T Consensus 166 gd~i~~l~l~~GGHlthg~~~n~~~~~~~~~~y~vd~~~g~iD~d~l~~~~~---~~~plvii~g~S~~~~~~-dl~~i~ 241 (493)
T PRK13580 166 NQRLLGMSLDSGGHLTHGFRPNISGKMFHQRSYGVDPDTGLLDYDEIAALAR---EFKPLILVAGYSAYPRRV-NFAKLR 241 (493)
T ss_pred CCEEEeecCCCCCeeecCcccchhhheeeeEecccCcccCccCHHHHHHHHh---hcCCEEEEeCccccCCCc-CHHHHH
Confidence 7999999888876632 1223346788888875 68999999999998 566667777755446666 799999
Q ss_pred HHHHHhCCEEEEecCCccccccc-C-----CCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC---CCCcc
Q psy7357 156 ELIHEHGGQVYLDGANMNAQVGL-C-----RPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL---PVHPL 226 (302)
Q Consensus 156 ~ia~~~g~llivD~a~~~~~~~~-~-----~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l---pg~~~ 226 (302)
++|+++|+++++|+||..++.+. . .|. .++||+++++||||+ ||++|++++++++.+++ ...++
T Consensus 242 eia~~~gA~L~VD~AH~~Gligg~~~~~~~~~~-~~~D~vtgT~hKaL~------GP~GG~I~~~~~l~~~L~~a~P~i~ 314 (493)
T PRK13580 242 EIADEVGAVLMVDMAHFAGLVAGKVFTGDEDPV-PHADIVTTTTHKTLR------GPRGGLVLAKKEYADAVDKGCPLVL 314 (493)
T ss_pred HHHHHcCCEEEEECchhhceeccccchhhcCCC-CCCcEEEeCChhhcc------CCCeEEEEecHHHHHHHhhCCCccc
Confidence 99999999999999997666432 1 232 368999999999997 67889999998877766 22233
Q ss_pred cCCCCcchhhhHHHHhhHhhHH-HH-HHHHH-----------HHh-cccccccccCCCcceeEEEEEEeccccccCCCCH
Q psy7357 227 SSIDSSIGAVSAAHYGSASILP-IS-WAYIR-----------RLE-SHYKTLFRSSRSGLVAHEFVIDVRDFKKSANIEA 292 (302)
Q Consensus 227 ~~~~~~l~~~~a~~~~~~~~~~-~~-~~y~~-----------~l~-~g~~~~~~~~~~~~~~he~~~~~~~~~~~~g~~~ 292 (302)
++.....++ +...++..+. .. ..|.+ +|. .||+++.+++. +|.+.|++.+. +++.
T Consensus 315 --gg~l~p~iA-A~avAl~e~~~~ef~~y~~~l~~Na~~La~~L~~~G~~vv~ggTd----shIV~V~lg~~----~~~g 383 (493)
T PRK13580 315 --GGPLPHVMA-AKAVALAEARTPEFQKYAQQVVDNARALAEGFLKRGARLVTGGTD----NHLVLIDVTSF----GLTG 383 (493)
T ss_pred --CCCccHHHH-HHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCC----CCEEEEEeCCH----HHHH
Confidence 222223333 3333443211 11 12322 565 69998754444 99999999753 3456
Q ss_pred HHHHHHhhc
Q psy7357 293 VDIAKRLMD 301 (302)
Q Consensus 293 ~~~~~~l~~ 301 (302)
++++++|.+
T Consensus 384 ~~a~~~L~e 392 (493)
T PRK13580 384 RQAESALLD 392 (493)
T ss_pred HHHHHHHHH
Confidence 677777754
No 22
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=99.91 E-value=4.9e-24 Score=197.59 Aligned_cols=178 Identities=21% Similarity=0.331 Sum_probs=142.4
Q ss_pred cHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHH-HHhhcCCCCCEEEEcCCCCcccHHHHH---hCCCEE
Q psy7357 31 GYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCY-HQAQDAHHRNVCLIPVSAHGTNPASAQ---MAGMSV 106 (302)
Q Consensus 31 G~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~-~~~~g~~~~d~Vlv~~~~hg~~~~~~~---~~g~~v 106 (302)
-..+++++.|+.+++++|++...++.+||++ | +.++++... ...+...++++|+++..+|.+....++ ..|++|
T Consensus 41 ~A~~~ve~AR~~iA~llga~~~eIiFTSG~T-E-snNlaI~g~~~a~~~~~~~~HIIts~iEH~aVl~~~~~Le~~g~~V 118 (386)
T COG1104 41 EARKAVEEAREQIAKLLGADPEEIIFTSGAT-E-SNNLAIKGAALAYRNAQKGKHIITSAIEHPAVLNTCRYLERQGFEV 118 (386)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEecCCc-H-HHHHHHHhhHHhhhcccCCCeEEEcccccHHHHHHHHHHHhcCCeE
Confidence 4678999999999999999987777777763 2 445555541 111212367899999999987766544 459999
Q ss_pred EEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccC
Q psy7357 107 EPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYG 185 (302)
Q Consensus 107 ~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~g 185 (302)
.++|++.+|.+|+++|+++|+ |+|.+|.+... |.+|+++ ||++|+++|+++|++|++|++|.++...+ ++.+++
T Consensus 119 tyl~V~~~G~v~~e~L~~al~---~~T~LVSim~aNnE~G~IQ-pI~ei~~i~k~~~i~fHvDAvQa~Gkipi-~~~~~~ 193 (386)
T COG1104 119 TYLPVDSNGLVDLEQLEEALR---PDTILVSIMHANNETGTIQ-PIAEIGEICKERGILFHVDAVQAVGKIPI-DLEELG 193 (386)
T ss_pred EEeCCCCCCeEcHHHHHHhcC---CCceEEEEEecccCeeecc-cHHHHHHHHHHcCCeEEEehhhhcCceec-cccccC
Confidence 999999999999999999999 88888777665 5899999 79999999999999999999997777665 567778
Q ss_pred CcEEEeCCCcccCCCCCCCCC-cceeEEEeCC--CCCCCC
Q psy7357 186 SDVSHLNLHKTFCIPHGGGGP-GMGPIGVKSH--LAPFLP 222 (302)
Q Consensus 186 aDiv~~~~hK~l~~p~~~gGp-~~G~l~~~~~--l~~~lp 222 (302)
+|++++|+|| ++|| |+|++++++. +.+.+.
T Consensus 194 vD~ls~SaHK-------~~GpkGiGaLyv~~~~~~~p~i~ 226 (386)
T COG1104 194 VDLLSFSAHK-------FGGPKGIGALYVRPGVRLEPLIH 226 (386)
T ss_pred cceEEeehhh-------ccCCCceEEEEECCCCccCceec
Confidence 9999999999 5578 8999999753 334443
No 23
>PLN02651 cysteine desulfurase
Probab=99.89 E-value=4.1e-21 Score=180.82 Aligned_cols=182 Identities=16% Similarity=0.265 Sum_probs=141.7
Q ss_pred ccHHHHHHHHHHHHHHHhCCCeeeEe-eCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH---HHhCCCE
Q psy7357 30 RGYEQLIGELETDLCEITGYDKISFQ-PNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS---AQMAGMS 105 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~~~~~-~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~---~~~~g~~ 105 (302)
..+.+.++++++.+++++|.+..++. ..+|+.++..++.++.... .+++++|++++..|+++... .+..|++
T Consensus 39 ~~~~~~~~~~r~~la~~~g~~~~~v~~t~~~t~a~~~~l~~~~~~~----~~~g~~vl~~~~~h~s~~~~~~~~~~~g~~ 114 (364)
T PLN02651 39 WESEDAVEKARAQVAALIGADPKEIIFTSGATESNNLAIKGVMHFY----KDKKKHVITTQTEHKCVLDSCRHLQQEGFE 114 (364)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhc----cCCCCEEEEcccccHHHHHHHHHHHhcCCE
Confidence 34567899999999999999765444 4445555434444432211 14688999999999876442 3367999
Q ss_pred EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCcc
Q psy7357 106 VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDY 184 (302)
Q Consensus 106 v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~ 184 (302)
++.+|+++++.+|+++++++++ +++++|+++++ |++|.+. |+++|+++||++|+++++|+++..+...+ ++.++
T Consensus 115 v~~v~~~~~~~~d~~~l~~~i~---~~t~lv~v~~~~n~tG~~~-~l~~I~~~~~~~g~~~~vD~a~~~g~~~~-~~~~~ 189 (364)
T PLN02651 115 VTYLPVKSDGLVDLDELAAAIR---PDTALVSVMAVNNEIGVIQ-PVEEIGELCREKKVLFHTDAAQAVGKIPV-DVDDL 189 (364)
T ss_pred EEEEccCCCCcCCHHHHHHhcC---CCcEEEEEECCCCCceecc-cHHHHHHHHHHcCCEEEEEcchhhCCccc-CcccC
Confidence 9999998889999999999998 78999999987 5899999 79999999999999999999986655443 56788
Q ss_pred CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCcc
Q psy7357 185 GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPL 226 (302)
Q Consensus 185 gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~~ 226 (302)
++|++++++||+ +.| +|+|++++++++.++++....
T Consensus 190 ~~D~~~~s~hK~-~gp-----~G~g~l~v~~~~~~~l~p~~~ 225 (364)
T PLN02651 190 GVDLMSISGHKI-YGP-----KGVGALYVRRRPRVRLEPLMS 225 (364)
T ss_pred CCCEEEechhhh-CCC-----CceEEEEEcCCCCCCCCcccc
Confidence 999999999996 422 489999999987777654443
No 24
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=99.88 E-value=4.3e-21 Score=182.29 Aligned_cols=176 Identities=19% Similarity=0.264 Sum_probs=140.8
Q ss_pred ccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEe
Q psy7357 30 RGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPV 109 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i 109 (302)
.+....+.++++.+++++|++.+.+ ..+|+.++.+++.++. +++|+|+++++.|.+....++..|++++.+
T Consensus 59 ~~~~~~~~~l~~~lA~~~g~~~~~~-~~g~t~a~~~al~~l~--------~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v 129 (387)
T PRK09331 59 QIKKPPIADFHEDLAEFLGMDEARV-THGAREGKFAVMHSLC--------KKGDYVVLDGLAHYTSYVAAERAGLNVREV 129 (387)
T ss_pred cccChHHHHHHHHHHHHhCCCcEEE-eCCHHHHHHHHHHHhc--------CCCCEEEECCCchHHHHHHHHHcCCEEEEE
Confidence 3445579999999999999987544 4555666655555443 688999999998877666678889999999
Q ss_pred ec--CCCCCCCHHHHHHHHhcc----CCCeEEEEEecCC-CceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCC
Q psy7357 110 SV--RKDGTIDFSDLETKVKKN----KETLSCLMITYPS-TFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPG 182 (302)
Q Consensus 110 ~~--~~~g~iD~~~l~~~i~~~----~~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~ 182 (302)
|. ++++.+|+++++++++++ .+++++|++++|+ ++|.+. |+++|+++||++|+++++|+++..+...+ +..
T Consensus 130 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~-~l~~I~~la~~~g~~livD~a~~~g~~~~-~~~ 207 (387)
T PRK09331 130 PKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLA-DAKKVAKVAHEYGIPFLLNGAYTVGRMPV-DGK 207 (387)
T ss_pred eCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCcccc-cHHHHHHHHHHcCCEEEEECCcccCCcCC-CHH
Confidence 98 667889999999999743 2478999999996 699999 79999999999999999999986543332 345
Q ss_pred ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 183 DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 183 ~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
.+++|++++++||+|+. ++++|++++++++++.+
T Consensus 208 ~~g~D~~~~s~~K~l~~-----~~~~G~l~~~~~~i~~~ 241 (387)
T PRK09331 208 KLGADFIVGSGHKSMAA-----SAPSGVLATTEEYADKV 241 (387)
T ss_pred HcCCCEEEeeCcccccC-----CCCEEEEEECHHHHhhc
Confidence 67899999999999974 36899999998766654
No 25
>KOG2467|consensus
Probab=99.88 E-value=2.6e-21 Score=175.08 Aligned_cols=244 Identities=19% Similarity=0.257 Sum_probs=172.8
Q ss_pred CCcccccHHHHHHHHH----HHHHHHhCCCe----eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH
Q psy7357 25 PQDQARGYEQLIGELE----TDLCEITGYDK----ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP 96 (302)
Q Consensus 25 p~e~sqG~l~~~~e~~----~~l~~l~g~~~----~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~ 96 (302)
|.+.+-|--|++++++ ++..+.|++|. +|++|+||+-|+++++.|+. .+.++|+-.+..+|.|.
T Consensus 73 PG~RYYGGne~ID~iE~LCq~RALeaF~ldp~kWGVNVQp~SGSPANfavYtall--------~Ph~RiMGLDLP~GGHL 144 (477)
T KOG2467|consen 73 PGARYYGGNEYIDQIELLCQKRALEAFGLDPEKWGVNVQPYSGSPANFAVYTALL--------KPHERIMGLDLPSGGHL 144 (477)
T ss_pred CcccccCcchHHHHHHHHHHHHHHHHhCCCHHHCceeeccCCCCchhhHHHhhhc--------CCCCeeeeccCCCCCcc
Confidence 4455666668888876 46677899986 59999999999999999987 78999998887777664
Q ss_pred H---HHHhCC-------CEEEEeecCC-CCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEE
Q psy7357 97 A---SAQMAG-------MSVEPVSVRK-DGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQV 165 (302)
Q Consensus 97 ~---~~~~~g-------~~v~~i~~~~-~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~ll 165 (302)
. ...... ++--.+.+|+ +|.||.|.||+.....+|+ . +++..+.+.... |.+++++||.+.|+++
T Consensus 145 sHGy~T~~kkISa~SiyFeSmPYkv~~~TG~IDYD~Le~~A~~frPk--~-iiaG~SaY~R~~-DYaR~R~Iad~~gA~L 220 (477)
T KOG2467|consen 145 SHGYQTPTKKISATSIYFESMPYKVDPSTGYIDYDKLEKTATLFRPK--L-IIAGTSAYSRLI-DYARFRKIADKVGAYL 220 (477)
T ss_pred ccccccCCceeeeeeeecccCceeeCCCCCceehHHHHHHHHhcCCc--E-EEeccccchhhc-cHHHHHHHHHhcCcee
Confidence 2 111111 2222233453 6899999999988755555 3 455545555555 7999999999999999
Q ss_pred EEecCCcccc---cccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCC---------------CCCC-----C
Q psy7357 166 YLDGANMNAQ---VGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHL---------------APFL-----P 222 (302)
Q Consensus 166 ivD~a~~~~~---~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l---------------~~~l-----p 222 (302)
++|.||..++ +...+|-++ +|||+.++||+|. |||.|+|..++.. -++| |
T Consensus 221 m~DMAHISgLVAA~vipsPFey-~DiVTTTTHKsLR------GPRg~mIFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP 293 (477)
T KOG2467|consen 221 MADMAHISGLVAAGVIPSPFEY-CDIVTTTTHKSLR------GPRGAMIFYRKGVKSIKPKQGKEILYDLEDKINFAVFP 293 (477)
T ss_pred ehhhhhHHHHHhcccCCCcccc-cceeecccccccc------CCcceeEEEeccCCcCCCCCCCcceechhhhhhhhccc
Confidence 9999986444 344667665 8999999999998 8999999988522 1222 4
Q ss_pred CCcccCCCCcchhhhHHHHhhHhh-HHH-HHHHHH-----------HHh-cccccccccCCCcceeEEEEEEeccccccC
Q psy7357 223 VHPLSSIDSSIGAVSAAHYGSASI-LPI-SWAYIR-----------RLE-SHYKTLFRSSRSGLVAHEFVIDVRDFKKSA 288 (302)
Q Consensus 223 g~~~~~~~~~l~~~~a~~~~~~~~-~~~-~~~y~~-----------~l~-~g~~~~~~~~~~~~~~he~~~~~~~~~~~~ 288 (302)
|.+-|..|+.+.++| .++.. ... ...|.+ +|. .|++++.+|++ .|.+++|+++ .
T Consensus 294 ~lQGGPHNhtIaalA----vALkQa~tpefk~Yq~qV~~Nakala~~l~~~Gy~lvtgGTD----nHlvLvDLr~----~ 361 (477)
T KOG2467|consen 294 GLQGGPHNHTIAALA----VALKQAMTPEFKEYQKQVLKNAKALASALISRGYKLVTGGTD----NHLVLVDLRP----K 361 (477)
T ss_pred cccCCCCcchHHHHH----HHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHcCceEecCCcc----ceEEEEeccc----c
Confidence 444444666666655 22221 111 125544 555 79999988777 9999999996 4
Q ss_pred CCCHHHHHHHh
Q psy7357 289 NIEAVDIAKRL 299 (302)
Q Consensus 289 g~~~~~~~~~l 299 (302)
|+++..+.+-|
T Consensus 362 G~dGarvE~vl 372 (477)
T KOG2467|consen 362 GVDGARVEKVL 372 (477)
T ss_pred CCchHHHHHHH
Confidence 78888776654
No 26
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=99.87 E-value=1.2e-20 Score=183.13 Aligned_cols=245 Identities=20% Similarity=0.211 Sum_probs=159.8
Q ss_pred cccccHHHHHHHHHH----HHHHHhCCCe----eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH
Q psy7357 27 DQARGYEQLIGELET----DLCEITGYDK----ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS 98 (302)
Q Consensus 27 e~sqG~l~~~~e~~~----~l~~l~g~~~----~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~ 98 (302)
....|+ +.++++++ +.+++|+.+. .+++++||+.|+++++.++. +++|+|+..+..+|.|...
T Consensus 70 r~~~G~-~~~d~lE~~~~~~~~~~f~~~~~~~~~nv~~~SG~~AN~av~~aL~--------~pgD~Il~~d~~~gGhl~H 140 (475)
T PLN03226 70 RYYGGN-EYIDQIETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFAVYTALL--------QPHDRIMGLDLPHGGHLSH 140 (475)
T ss_pred cCcCCC-hhHHHHHHHHHHHHHHHhCCCcceeEEecCcCchHHHHHHHHHHhC--------CCCCEEEECCCCcCcchhh
Confidence 344565 37777765 6788899776 68889999999988888876 7899999866555555432
Q ss_pred H------H--hCCCEEE--EeecC-CCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEE
Q psy7357 99 A------Q--MAGMSVE--PVSVR-KDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYL 167 (302)
Q Consensus 99 ~------~--~~g~~v~--~i~~~-~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~lliv 167 (302)
. + ..+..+. .++.+ ++|.+|+++|++.+.++ +++.|++.. +.+|... |+++|+++|+++|+++++
T Consensus 141 ~~~~~g~~~s~~~~~~~~~~y~~~~~~g~iD~d~Le~~l~~~--~pklIv~~~-S~~s~~~-D~a~i~~ia~~~ga~Llv 216 (475)
T PLN03226 141 GYQTDGKKISATSIYFESMPYRLDESTGLIDYDKLEKKAMLF--RPKLIIAGA-SAYPRDW-DYARMRKIADKVGALLMC 216 (475)
T ss_pred hhhhcccccccceEEEEeeeeeecCCCCCcCHHHHHHHHhhc--CCeEEEEec-CcCCCcc-CHHHHHHHHHHcCCEEEE
Confidence 1 1 1121222 33344 46899999999999753 445555533 5567777 899999999999999999
Q ss_pred ecCCccccccc---CCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC--------------CCCccc--C
Q psy7357 168 DGANMNAQVGL---CRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL--------------PVHPLS--S 228 (302)
Q Consensus 168 D~a~~~~~~~~---~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l--------------pg~~~~--~ 228 (302)
|+||..++.+. ..|.+ ++|++++++||||+ ||++|++++++++.+.+ ....+. +
T Consensus 217 D~AH~~Gli~~~~~~~p~~-~~Div~~t~hK~L~------GP~Gg~I~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~ 289 (475)
T PLN03226 217 DMAHISGLVAAQEAASPFE-YCDVVTTTTHKSLR------GPRGGMIFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQ 289 (475)
T ss_pred EchhhhCcccCCCCCCCCC-CCeEEEecCccccc------CCCceEEEEchhhcccccCCCccHHHHHHHhccccCCccC
Confidence 99997665432 23333 69999999999997 57669999987544221 111100 1
Q ss_pred CCCcchhhhHHHHhhHhhH-HHHH-----------HHHH-HHh-cccccccccCCCcceeEEEEEEeccccccCCCCHHH
Q psy7357 229 IDSSIGAVSAAHYGSASIL-PISW-----------AYIR-RLE-SHYKTLFRSSRSGLVAHEFVIDVRDFKKSANIEAVD 294 (302)
Q Consensus 229 ~~~~l~~~~a~~~~~~~~~-~~~~-----------~y~~-~l~-~g~~~~~~~~~~~~~~he~~~~~~~~~~~~g~~~~~ 294 (302)
+..+... .|+...++..+ ...+ .|++ .|. .|++++.+++. .|.++|++.+ .|++..+
T Consensus 290 g~p~~~~-iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~~G~~l~~~~t~----~hi~lv~~~~----~gi~~~~ 360 (475)
T PLN03226 290 GGPHNHT-IAALAVALKQAMTPEFKAYQKQVKANAAALANRLMSKGYKLVTGGTD----NHLVLWDLRP----LGLTGSR 360 (475)
T ss_pred CCchHHH-HHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhCCCEEEcCCCC----CCEEEEEccC----CCCCHHH
Confidence 2222222 22333333311 1111 1222 455 59999765555 8999999864 3688888
Q ss_pred HHHHhh
Q psy7357 295 IAKRLM 300 (302)
Q Consensus 295 ~~~~l~ 300 (302)
+.+.|-
T Consensus 361 ~~~~L~ 366 (475)
T PLN03226 361 VEKVLD 366 (475)
T ss_pred HHHHHH
Confidence 888774
No 27
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=99.87 E-value=1.7e-20 Score=178.24 Aligned_cols=177 Identities=21% Similarity=0.256 Sum_probs=137.7
Q ss_pred cccHHHHHHHHHHHHHHHhCCCeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH----HHHHhCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYDKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP----ASAQMAG 103 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~----~~~~~~g 103 (302)
+++..+.++++++.+++++|.+..++..++|+ .+...+..++... .+++|+|+++++.|.++. ..++..|
T Consensus 55 ~~~~~~~~~~l~~~ia~~~~~~~~~v~~~~~~t~~l~~~~~~~~~~-----~~~gd~vl~~~~~~~s~~~~~~~~~~~~g 129 (397)
T TIGR01976 55 SRRADQVVDDAREAVADLLNADPPEVVFGANATSLTFLLSRAISRR-----WGPGDEVIVTRLDHEANISPWLQAAERAG 129 (397)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHHHHHhc-----CCCCCEEEEcCCchHhHHHHHHHHHHhcC
Confidence 45677889999999999999876545554454 4332233333211 157899999999887653 2356789
Q ss_pred CEEEEeecCC-CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCC
Q psy7357 104 MSVEPVSVRK-DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRP 181 (302)
Q Consensus 104 ~~v~~i~~~~-~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p 181 (302)
++++.++.++ ++.+|+++++++++ +++++|++++| |++|.+. |+++|+++||++|+++++|+++..+... ...
T Consensus 130 ~~~~~~~~~~~~~~~~~~~l~~~i~---~~~~lv~i~~~~n~tG~~~-~~~~i~~~~~~~~~~~ivD~a~~~~~~~-~~~ 204 (397)
T TIGR01976 130 AKVKWARVDEATGELHPDDLASLLS---PRTRLVAVTAASNTLGSIV-DLAAITELVHAAGALVVVDAVHYAPHGL-IDV 204 (397)
T ss_pred CEEEEEeccccCCCcCHHHHHHhcC---CCceEEEEeCCCCCCCccC-CHHHHHHHHHHcCCEEEEehhhhccccC-CCH
Confidence 9999999876 68899999999998 78999999998 5899998 7999999999999999999998544332 244
Q ss_pred CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 182 GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 182 ~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
.++++|++++++||+| ||++|++++++++++.+.
T Consensus 205 ~~~~~d~~~~s~~K~~-------g~~~G~l~~~~~~~~~l~ 238 (397)
T TIGR01976 205 QATGADFLTCSAYKFF-------GPHMGILWGRPELLMNLP 238 (397)
T ss_pred HHcCCCEEEEechhhc-------CCceEEEEEcHHHHhhCC
Confidence 5678999999999987 367999999987766654
No 28
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=99.87 E-value=2.3e-20 Score=175.82 Aligned_cols=179 Identities=18% Similarity=0.243 Sum_probs=137.9
Q ss_pred cccHHHHHHHHHHHHHHHhCCC-eeeEeeC-chHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH----HHHHhC
Q psy7357 29 ARGYEQLIGELETDLCEITGYD-KISFQPN-SGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP----ASAQMA 102 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~-~~~~~~~-~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~----~~~~~~ 102 (302)
++...+.+.++++.+++++|.+ ..++... +++.+...++.++. . +..++++|+++++.|++.. ..++..
T Consensus 38 ~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~---~--~~~~g~~vl~~~~~~~~~~~~~~~~~~~~ 112 (373)
T cd06453 38 SARATDAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLG---R--ANKPGDEIVTSVMEHHSNIVPWQQLAERT 112 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhh---h--cCCCCCEEEECcchhHHHHHHHHHHHhhc
Confidence 4567788899999999999988 4445444 44455434444433 0 0017899999999987752 234577
Q ss_pred CCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCC
Q psy7357 103 GMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRP 181 (302)
Q Consensus 103 g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p 181 (302)
|++++.++.++++.+|++++++.++ +++++|++++| |++|.+. |+++|.++|+++|+++++|+++..+...+ ..
T Consensus 113 g~~~~~v~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~~~tG~~~-~~~~i~~~~~~~~~~li~D~a~~~~~~~~-~~ 187 (373)
T cd06453 113 GAKLKVVPVDDDGQLDLEALEKLLT---ERTKLVAVTHVSNVLGTIN-PVKEIGEIAHEAGVPVLVDGAQSAGHMPV-DV 187 (373)
T ss_pred CcEEEEeecCCCCCcCHHHHHHHhc---CCceEEEEeCcccccCCcC-CHHHHHHHHHHcCCEEEEEhhhhcCceee-ec
Confidence 9999999998888999999999998 68899999998 5899999 79999999999999999999875333222 33
Q ss_pred CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 182 GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 182 ~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
.++++|++++++||+|+ ++|+|++++++++.+.+..
T Consensus 188 ~~~~~d~~~~s~~K~~~------~~g~g~~~~~~~~~~~~~~ 223 (373)
T cd06453 188 QDLGCDFLAFSGHKMLG------PTGIGVLYGKEELLEEMPP 223 (373)
T ss_pred cccCCCEEEeccccccC------CCCcEEEEEchHHhhcCCC
Confidence 46789999999999986 3678999999887776654
No 29
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=99.87 E-value=2.7e-20 Score=180.27 Aligned_cols=240 Identities=19% Similarity=0.192 Sum_probs=156.3
Q ss_pred HHHHH-HHHHHHHHhCCCee----eEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHH--------
Q psy7357 34 QLIGE-LETDLCEITGYDKI----SFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQ-------- 100 (302)
Q Consensus 34 ~~~~e-~~~~l~~l~g~~~~----~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~-------- 100 (302)
+.+++ .++.++++||++.. ++++.+|+.++.+++.++. +++|+|++++..|+++.....
T Consensus 79 ~~iE~~ar~~~a~lf~a~~~~~~~~~~~~sgt~an~~v~~al~--------~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~ 150 (452)
T PTZ00094 79 DKIENLCQKRALEAFGLDPEEWGVNVQPYSGSPANFAVYTALL--------QPHDRIMGLDLPSGGHLTHGFYTAKKKVS 150 (452)
T ss_pred HHHHHHHHHHHHHHhCCCcccceeecCCCchHHHHHHHHHHhc--------CCCCEEEecccccCCcccccccccccccc
Confidence 44443 56799999999763 4556788887766666653 678999999999988754321
Q ss_pred --hCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCccccccc
Q psy7357 101 --MAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGL 178 (302)
Q Consensus 101 --~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~ 178 (302)
..++++..++++++|.+|+++|+++++++ +++.|++.+ +.+|... |+++|+++||++|+++++|++|..+..+.
T Consensus 151 ~~~~~~~~~~~~~~~~g~id~~~L~~~l~~~--~~~lvi~~~-s~~g~~~-di~~I~~i~~~~ga~l~vDaaq~~G~i~~ 226 (452)
T PTZ00094 151 ATSIYFESLPYQVNEKGLIDYDKLEELAKAF--RPKLIIAGA-SAYPRDI-DYKRFREICDSVGAYLMADIAHTSGLVAA 226 (452)
T ss_pred cceeeeeeeecccCCCCCcCHHHHHHHHHHh--CCCEEEEeC-CCCCCcc-CHHHHHHHHHHcCCEEEEeccchhccccC
Confidence 12355666777778999999999999743 344566655 4579888 89999999999999999999997666532
Q ss_pred ---CCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCC----CCCCccc--CCCCcchhhhHHHHhhHhhH-H
Q psy7357 179 ---CRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPF----LPVHPLS--SIDSSIGAVSAAHYGSASIL-P 248 (302)
Q Consensus 179 ---~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~----lpg~~~~--~~~~~l~~~~a~~~~~~~~~-~ 248 (302)
..|. .++|++++++||||. ||.+|++++++++.+. +...++. .+..+...++ +...++..+ .
T Consensus 227 ~~~~~~~-~~~D~l~~S~hK~l~------GP~Gg~l~~~~~~~~~l~~~~~~~~~p~~~G~~~~~~ia-al~~al~~~~~ 298 (452)
T PTZ00094 227 GVLPSPF-PYADVVTTTTHKSLR------GPRSGLIFYRKKVKPDIENKINEAVFPGLQGGPHNHQIA-AIAVQLKEVQS 298 (452)
T ss_pred CCCCCCC-CCCcEEEcCCccCCC------CCCceEEEEecccchHHHHhhccccCCCCCCCchHHHHH-HHHHHHHHHhC
Confidence 1232 379999999999997 5666888888765432 1111111 0112222222 222222211 1
Q ss_pred HHH-----------HHHH-HHh-cccccccccCCCcceeEEEEEEeccccccCCCCHHHHHHHhhc
Q psy7357 249 ISW-----------AYIR-RLE-SHYKTLFRSSRSGLVAHEFVIDVRDFKKSANIEAVDIAKRLMD 301 (302)
Q Consensus 249 ~~~-----------~y~~-~l~-~g~~~~~~~~~~~~~~he~~~~~~~~~~~~g~~~~~~~~~l~~ 301 (302)
..+ .|+. .|. .|+++..+++. .|..++++.. .|++..++.++|-+
T Consensus 299 ~~~~~~~~~i~~l~~~l~~~L~~~g~~v~~~~~~----~~~~~v~~~~----~~~~~~~~~~~L~~ 356 (452)
T PTZ00094 299 PEWKEYAKQVLKNAKALAAALEKRGYDLVTGGTD----NHLVLVDLRP----FGITGSKMEKLLDA 356 (452)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCcEEecCCCC----CceEeecCCc----CCCCHHHHHHHHHH
Confidence 111 2222 454 48888654333 5778887752 25788888887743
No 30
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=99.86 E-value=1.3e-19 Score=169.80 Aligned_cols=172 Identities=16% Similarity=0.245 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHHHHhCCCeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCC-CEEEEcCCCCcccHHH---HHhCCCEE
Q psy7357 32 YEQLIGELETDLCEITGYDKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHR-NVCLIPVSAHGTNPAS---AQMAGMSV 106 (302)
Q Consensus 32 ~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~-d~Vlv~~~~hg~~~~~---~~~~g~~v 106 (302)
..+.++++++++++++|++..++..++|+ .++..++.++... +.+++ ++|+++...|+++... ++..|+++
T Consensus 40 ~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~----~~~~g~~~vi~~~~~~~s~~~~~~~~~~~G~~v 115 (353)
T TIGR03235 40 AKKAVERARKQVAEALGADTEEVIFTSGATESNNLAILGLARA----GEQKGKKHIITSAIEHPAVLEPIRALERNGFTV 115 (353)
T ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHh----cccCCCCeeeEcccccHHHHHHHHHHHhcCCEE
Confidence 44678999999999999986556555554 5554555444321 11234 7889998898877543 44679999
Q ss_pred EEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccC
Q psy7357 107 EPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYG 185 (302)
Q Consensus 107 ~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~g 185 (302)
+.+|.++++.+|+++++++++ +++++|++++| |++|.+. |+++|.++||++|+++++|+++..+...+ +..+++
T Consensus 116 ~~v~~~~~~~~d~~~l~~~l~---~~~~lv~~~~~~n~tG~~~-~~~~I~~l~~~~~~~~ivD~a~~~g~~~~-~~~~~~ 190 (353)
T TIGR03235 116 TYLPVDESGRIDVDELADAIR---PDTLLVSIMHVNNETGSIQ-PIREIAEVLEAHEAFFHVDAAQVVGKITV-DLSADR 190 (353)
T ss_pred EEEccCCCCcCCHHHHHHhCC---CCCEEEEEEcccCCceecc-CHHHHHHHHHHcCCEEEEEchhhcCCccc-cccccC
Confidence 999998888999999999997 67899999998 5899999 79999999999999999999986555443 445678
Q ss_pred CcEEEeCCCcccCCCCCCCCCcceeEEEeCCCC
Q psy7357 186 SDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLA 218 (302)
Q Consensus 186 aDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~ 218 (302)
+|++++++||+++ | ||+|+++++++..
T Consensus 191 ~D~~~~s~~K~~g-p-----~g~g~l~~~~~~~ 217 (353)
T TIGR03235 191 IDLISCSGHKIYG-P-----KGIGALVIRKRGK 217 (353)
T ss_pred CCEEEeehhhcCC-C-----CceEEEEEccCcc
Confidence 9999999999753 3 4789999998754
No 31
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=99.86 E-value=2.9e-20 Score=175.37 Aligned_cols=179 Identities=21% Similarity=0.305 Sum_probs=144.6
Q ss_pred cccccHHHHHHHHHHHHHHHhCCCe-eeE-eeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHH
Q psy7357 27 DQARGYEQLIGELETDLCEITGYDK-ISF-QPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQ 100 (302)
Q Consensus 27 e~sqG~l~~~~e~~~~l~~l~g~~~-~~~-~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~ 100 (302)
..++-..+.++++++.+++++|++. .++ ...+++.+...++.++...+ +++++|++.+..|+++.. .++
T Consensus 36 ~~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~l~~~~-----~~g~~vl~~~~~~~s~~~~~~~~~~ 110 (371)
T PF00266_consen 36 HRSREFAEILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASSLLNPL-----KPGDEVLVTSNEHPSNRYPWEEIAK 110 (371)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHHHHHHG-----TTTCEEEEEESSHHHHHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHHHHhcCCccccccccccccchhhhhhhhcccccc-----ccccccccccccccccccccccccc
Confidence 3455678899999999999999987 554 45555566655555553211 678999999999887762 344
Q ss_pred hCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccC
Q psy7357 101 MAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLC 179 (302)
Q Consensus 101 ~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~ 179 (302)
..|++++.+|.+.++.+|++++++.|+ +++++|++++- |.+|++. |+++|+++||++|+++++|+++.++...+
T Consensus 111 ~~g~~v~~i~~~~~~~~~~~~~~~~l~---~~~~lv~~~~~~~~tG~~~-pi~~I~~~~~~~~~~~~vD~~~~~g~~~i- 185 (371)
T PF00266_consen 111 RKGAEVRVIPADPGGSLDLEDLEEALN---PDTRLVSISHVENSTGVRN-PIEEIAKLAHEYGALLVVDAAQSAGCVPI- 185 (371)
T ss_dssp HTTEEEEEEEEGTTSSCSHHHHHHHHH---TTESEEEEESBETTTTBBS-SHHHHHHHHHHTTSEEEEE-TTTTTTSS--
T ss_pred cchhhhccccccccchhhhhhhhhhhc---cccceEEeecccccccEEe-eeceehhhhhccCCceeEechhccccccc-
Confidence 789999999998889999999999998 89999988885 6789999 79999999999999999999987777664
Q ss_pred CCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 180 RPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 180 ~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
+..++++|++++++|| |+. +||+|++++++++.+++
T Consensus 186 d~~~~~~D~~~~s~~K-l~g-----p~G~g~l~v~~~~~~~~ 221 (371)
T PF00266_consen 186 DLDELGADFLVFSSHK-LGG-----PPGLGFLYVRPEAIERL 221 (371)
T ss_dssp -TTTTTESEEEEESTS-TTS-----SSTEEEEEEEHHHHHHH
T ss_pred cccccccceeeecccc-cCC-----CCchhhheehhhhhhcc
Confidence 5678899999999999 874 36899999999776666
No 32
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=99.86 E-value=1.1e-19 Score=172.95 Aligned_cols=176 Identities=19% Similarity=0.279 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHHHHhCCC-eeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCE
Q psy7357 32 YEQLIGELETDLCEITGYD-KISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMS 105 (302)
Q Consensus 32 ~l~~~~e~~~~l~~l~g~~-~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~ 105 (302)
..+.++++++.+++++|++ ..++...+|+ .+...++.++.. ...+++++|+++++.|+++.. .++..|++
T Consensus 60 ~~~~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~l~~~~~~~~~----~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~ 135 (403)
T TIGR01979 60 ATEAYEAVREKVAKFINAASDEEIVFTRGTTESINLVAYSWGD----SNLKAGDEIVISEMEHHANIVPWQLLAERTGAT 135 (403)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHHhhh----hcCCCCCEEEECcchhhHHHHHHHHHHHhcCcE
Confidence 4467889999999999997 4445545554 443233333210 001578999999999887532 34578999
Q ss_pred EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCcc
Q psy7357 106 VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDY 184 (302)
Q Consensus 106 v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~ 184 (302)
++.+|+++++.+|+++++++++ ++|++|++++| |++|.+. |+++|+++||++|+++++|+++..+...+ +..++
T Consensus 136 ~~~v~~~~~~~~~~~~l~~~i~---~~~~lv~~~~~~~~tG~~~-~~~~i~~~~~~~~~~~ivD~a~~~g~~~~-~~~~~ 210 (403)
T TIGR01979 136 LKFIPLDDDGTLDLDDLEKLLT---EKTKLVAITHVSNVLGTVN-PVEEIAKLAHQVGAKVLVDGAQAVPHMPV-DVQAL 210 (403)
T ss_pred EEEEecCCCCCCCHHHHHHHhc---cCCeEEEEEcccccccccC-CHHHHHHHHHHcCCEEEEEchhhcCcccc-Ccccc
Confidence 9999998889999999999998 78999999997 5899999 79999999999999999999985543322 34567
Q ss_pred CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 185 GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 185 gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
++|++++++||+++ | +|+|++++++++.+.++
T Consensus 211 ~~d~~~~s~~K~~g-p-----~G~g~l~~~~~~~~~~~ 242 (403)
T TIGR01979 211 DCDFYVFSGHKMYG-P-----TGIGVLYGKEELLEQMP 242 (403)
T ss_pred CCCEEEEecccccC-C-----CCceEEEEchHHHhcCC
Confidence 89999999999764 3 46899999988777665
No 33
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=99.86 E-value=8.4e-20 Score=174.31 Aligned_cols=180 Identities=18% Similarity=0.244 Sum_probs=137.9
Q ss_pred ccHHHHHHHHHHHHHHHhCC-CeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH----HHHHhCC
Q psy7357 30 RGYEQLIGELETDLCEITGY-DKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP----ASAQMAG 103 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~-~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~----~~~~~~g 103 (302)
+-..+.++++++.+++++|. +..++..++|+ ++...++.++.. . ..+++|+|++++..|++.. ..++..|
T Consensus 63 ~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~~l~~~~~~~~~---~-~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g 138 (406)
T PRK09295 63 AQATEKMENVRKQAALFINARSAEELVFVRGTTEGINLVANSWGN---S-NVRAGDNIIISEMEHHANIVPWQMLCARVG 138 (406)
T ss_pred HHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHhhh---h-cCCCcCEEEECcchhhHHHHHHHHHHHHcC
Confidence 34567889999999999998 44455555555 443233333210 0 0157899999999987652 2456789
Q ss_pred CEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCC
Q psy7357 104 MSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPG 182 (302)
Q Consensus 104 ~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~ 182 (302)
++++.+|.++++.+|+++|+++++ ++|++|++++| |++|.+. |+++|.++||++|+++++|++|..+...+ +..
T Consensus 139 ~~v~~v~~~~~~~~d~~~l~~~i~---~~t~lv~l~~~~n~tG~~~-~~~~i~~~~~~~~~~vivD~a~~~g~~~~-~~~ 213 (406)
T PRK09295 139 AELRVIPLNPDGTLQLETLPALFD---ERTRLLAITHVSNVLGTEN-PLAEMIALAHQHGAKVLVDGAQAVMHHPV-DVQ 213 (406)
T ss_pred cEEEEEecCCCCCCCHHHHHHhcC---CCcEEEEEecchhcccccC-CHHHHHHHHHHcCCEEEEEcccccCcccc-Cch
Confidence 999999998888999999999998 78999999998 5899999 79999999999999999999986554333 345
Q ss_pred ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCC
Q psy7357 183 DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVH 224 (302)
Q Consensus 183 ~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~ 224 (302)
++++|++++++||.++ | +|+|++++++++.+.++..
T Consensus 214 ~~~~D~~~~s~~K~~g-p-----~G~G~l~~~~~~~~~~~~~ 249 (406)
T PRK09295 214 ALDCDFYVFSGHKLYG-P-----TGIGILYVKEALLQEMPPW 249 (406)
T ss_pred hcCCCEEEeehhhccC-C-----CCcEEEEEchHhHhhCCCc
Confidence 6789999999999443 3 4689999998887777643
No 34
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=99.86 E-value=6e-21 Score=178.01 Aligned_cols=181 Identities=17% Similarity=0.295 Sum_probs=149.4
Q ss_pred ccccHHHHHHHHHHHHHHHhCCC--eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCC-CCcccH-HHHHhCC
Q psy7357 28 QARGYEQLIGELETDLCEITGYD--KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVS-AHGTNP-ASAQMAG 103 (302)
Q Consensus 28 ~sqG~l~~~~e~~~~l~~l~g~~--~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~-~hg~~~-~~~~~~g 103 (302)
.+.-+..++.++.+.++.+++.+ .+.+.+++|+.+.+|++.++. +++|+||+... .||... ..++.+|
T Consensus 32 ~s~~F~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl~--------~pgdkVLv~~nG~FG~R~~~ia~~~g 103 (383)
T COG0075 32 RSPDFVGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASLV--------EPGDKVLVVVNGKFGERFAEIAERYG 103 (383)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhcc--------CCCCeEEEEeCChHHHHHHHHHHHhC
Confidence 45678889999999999999988 456667888888778887766 68888777654 666554 3788999
Q ss_pred CEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEec-CCCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCC
Q psy7357 104 MSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITY-PSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPG 182 (302)
Q Consensus 104 ~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~-Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~ 182 (302)
.+++.+..++.-.+|+++++++++++ ++.++|.+++ -++||+++ |+++|+++|++||+++|||++..++... ..+.
T Consensus 104 ~~v~~~~~~wg~~v~p~~v~~~L~~~-~~~~~V~~vH~ETSTGvln-pl~~I~~~~k~~g~l~iVDaVsS~Gg~~-~~vd 180 (383)
T COG0075 104 AEVVVLEVEWGEAVDPEEVEEALDKD-PDIKAVAVVHNETSTGVLN-PLKEIAKAAKEHGALLIVDAVSSLGGEP-LKVD 180 (383)
T ss_pred CceEEEeCCCCCCCCHHHHHHHHhcC-CCccEEEEEeccCcccccC-cHHHHHHHHHHcCCEEEEEecccCCCcc-cchh
Confidence 99999999887889999999999854 4566666666 36899999 8999999999999999999975444333 4678
Q ss_pred ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCC
Q psy7357 183 DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVH 224 (302)
Q Consensus 183 ~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~ 224 (302)
+||+|+++.+++|+|+.| ||+|+++++++.++.+..+
T Consensus 181 ~wgiDv~itgSQK~l~~P-----PGla~v~~S~~a~e~~~~~ 217 (383)
T COG0075 181 EWGIDVAITGSQKALGAP-----PGLAFVAVSERALEAIEER 217 (383)
T ss_pred hcCccEEEecCchhccCC-----CccceeEECHHHHHHHhcC
Confidence 999999999999999987 8999999998877777654
No 35
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=99.86 E-value=7.7e-20 Score=173.98 Aligned_cols=177 Identities=16% Similarity=0.149 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHHHHHhCCC-eeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH----HHHHhCCCE
Q psy7357 32 YEQLIGELETDLCEITGYD-KISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP----ASAQMAGMS 105 (302)
Q Consensus 32 ~l~~~~e~~~~l~~l~g~~-~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~----~~~~~~g~~ 105 (302)
..+.++++++.+++++|++ ..++..++|+ ++...++.++. . ...+++|+||++++.|+++. ..++..|++
T Consensus 58 ~~~~~~~~r~~la~~~g~~~~~~i~~t~g~t~~l~~~~~~~~---~-~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~ 133 (398)
T TIGR03392 58 LTARYELARQQVARFLNAPDAENIVWTRGTTESINLVAQSYA---R-PRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAK 133 (398)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEeCChHHHHHHHHHHhh---h-ccCCCCCEEEECCcchhHHHHHHHHHHHHcCcE
Confidence 4567889999999999985 4455444444 54433333331 0 00157899999999987642 245788999
Q ss_pred EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCcc
Q psy7357 106 VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDY 184 (302)
Q Consensus 106 v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~ 184 (302)
++.+|.++++.+|+++++++++ ++|++|++++| |++|.+. |+++|+++||++|+++++|+++..+...+ +..++
T Consensus 134 v~~v~~~~~~~~~~~~l~~~i~---~~t~lv~i~~~~n~tG~~~-~~~~i~~~~~~~~~~~ivD~a~~~~~~~~-~~~~~ 208 (398)
T TIGR03392 134 VVKLPIGADLLPDIRQLPELLT---PRTRILALGQMSNVTGGCP-DLARAITLAHQYGAVVVVDGAQGVVHGPP-DVQAL 208 (398)
T ss_pred EEEEecCCCCCcCHHHHHHHhc---cCceEEEEECccccccccC-CHHHHHHHHHHcCCEEEEEhhhhcCCCCC-Chhhc
Confidence 9999998888899999999998 78999999998 5899999 79999999999999999999985443322 33456
Q ss_pred CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 185 GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 185 gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
++|++++++||.++ | +|+|++++++++.++++.
T Consensus 209 ~~d~~~~s~~K~~g-p-----~G~G~l~~~~~~~~~~~~ 241 (398)
T TIGR03392 209 DIDFYAFSGHKLYG-P-----TGIGVLYGKTELLEAMPP 241 (398)
T ss_pred CCCEEEEecccccC-C-----CceEEEEEcHHHHhhCCC
Confidence 89999999999553 3 469999999888777653
No 36
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=99.86 E-value=1e-19 Score=173.31 Aligned_cols=179 Identities=16% Similarity=0.164 Sum_probs=137.9
Q ss_pred ccHHHHHHHHHHHHHHHhCC-CeeeEeeCch-HHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH----HHHHhCC
Q psy7357 30 RGYEQLIGELETDLCEITGY-DKISFQPNSG-AQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP----ASAQMAG 103 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~-~~~~~~~~~G-a~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~----~~~~~~g 103 (302)
+...+.++++++.+++++|+ +..++..++| +++...++.++. . ...+++|+||++++.|+++. ..++..|
T Consensus 59 ~~~~~~~~~~r~~la~~~g~~~~~~i~~~~~~t~~i~~~~~~~~---~-~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g 134 (401)
T PRK10874 59 QRLTARYEAAREQVAQLLNAPDAKNIVWTRGTTESINLVAQSYA---R-PRLQPGDEIIVSEAEHHANLVPWLMVAQQTG 134 (401)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHhh---h-ccCCCcCEEEECCcchHHHHHHHHHHHHHhC
Confidence 44567889999999999999 5555554444 454433333331 0 00157899999999987642 2456789
Q ss_pred CEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCC
Q psy7357 104 MSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPG 182 (302)
Q Consensus 104 ~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~ 182 (302)
++++.+|.++++.+|++++++.++ ++|++|++++| |++|.+. |+++|+++||++|+++++|+++..+...+ +..
T Consensus 135 ~~v~~v~~~~~~~~d~~~l~~~i~---~~t~lv~i~~~~n~tG~~~-~~~~i~~l~~~~g~~~ivD~a~~~g~~~~-~~~ 209 (401)
T PRK10874 135 AKVVKLPLGADRLPDVDLLPELIT---PRTRILALGQMSNVTGGCP-DLARAITLAHQAGMVVMVDGAQGAVHFPA-DVQ 209 (401)
T ss_pred CEEEEEecCCCCcCCHHHHHHhcC---cCcEEEEEeCCcccccCcC-CHHHHHHHHHHcCCEEEEECCcccccccC-Cch
Confidence 999999998888999999999998 78999999998 5899999 79999999999999999999985444332 345
Q ss_pred ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 183 DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 183 ~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
.+++|++++++||.++ | +|+|++++++++.+.++.
T Consensus 210 ~~~~d~~~~s~~K~~g-p-----~G~G~l~~~~~~~~~~~~ 244 (401)
T PRK10874 210 ALDIDFYAFSGHKLYG-P-----TGIGVLYGKSELLEAMSP 244 (401)
T ss_pred hcCCCEEEEecccccC-C-----CccEEEEEchHHHhcCCC
Confidence 6789999999999553 3 478999999888777653
No 37
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=99.86 E-value=5e-20 Score=172.44 Aligned_cols=176 Identities=17% Similarity=0.262 Sum_probs=137.5
Q ss_pred ccHHHHHHHHHHHHHHHhCCCe--eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCccc--HHHHHhCCCE
Q psy7357 30 RGYEQLIGELETDLCEITGYDK--ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTN--PASAQMAGMS 105 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~--~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~--~~~~~~~g~~ 105 (302)
....+.++++++.+++++|.+. ..+.+.+|++++..++.++. .++++|+++++.|.++ ...++..|.+
T Consensus 28 ~~~~~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~~--------~~g~~vl~~~~~~~~~~~~~~~~~~g~~ 99 (356)
T cd06451 28 PEFLALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNLL--------EPGDKVLVGVNGVFGDRWADMAERYGAD 99 (356)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHhC--------CCCCEEEEecCCchhHHHHHHHHHhCCC
Confidence 3567889999999999999953 24456666766544444432 5789999988766553 3456788999
Q ss_pred EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCcc
Q psy7357 106 VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDY 184 (302)
Q Consensus 106 v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~ 184 (302)
++.+|.++++.+|++++++.+++ .++++|++++| |++|.+. |+++|.++|+++|+++++|+++..+... .++..+
T Consensus 100 ~~~v~~~~~~~~~~~~l~~~i~~--~~~~~v~i~~~~~~~G~~~-~~~~i~~~a~~~~~~li~D~~~~~g~~~-~~~~~~ 175 (356)
T cd06451 100 VDVVEKPWGEAVSPEEIAEALEQ--HDIKAVTLTHNETSTGVLN-PLEGIGALAKKHDALLIVDAVSSLGGEP-FRMDEW 175 (356)
T ss_pred eEEeecCCCCCCCHHHHHHHHhc--cCCCEEEEeccCCCccccc-CHHHHHHHHHhcCCEEEEeeehhccCcc-cccccc
Confidence 99999987788999999999982 27888999888 5899998 7999999999999999999987543322 245567
Q ss_pred CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 185 GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 185 gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
++|+++.++||+|+.| +|+|+++.++++++.+.
T Consensus 176 ~~d~~~~s~~K~l~~p-----~g~G~l~~~~~~~~~~~ 208 (356)
T cd06451 176 GVDVAYTGSQKALGAP-----PGLGPIAFSERALERIK 208 (356)
T ss_pred CccEEEecCchhccCC-----CCcceeEECHHHHHHHH
Confidence 8999999999999854 47899999987765543
No 38
>PLN02409 serine--glyoxylate aminotransaminase
Probab=99.85 E-value=1e-20 Score=180.49 Aligned_cols=178 Identities=16% Similarity=0.211 Sum_probs=140.9
Q ss_pred cccHHHHHHHHHHHHHHHhCCCe--eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH--HHHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYDK--ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP--ASAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~--~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~--~~~~~~g~ 104 (302)
+.++.+.++++++++++++|.+. ..+.+++|+.++++++..+. ++||+|+++++.|.+.. ..++..|+
T Consensus 37 ~~~~~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~~--------~~Gd~Vlv~~~~~~~~~~~~~~~~~g~ 108 (401)
T PLN02409 37 SPAFPALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNTL--------SPGDKVVSFRIGQFSLLWIDQMQRLNF 108 (401)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhcC--------CCCCEEEEeCCCchhHHHHHHHHHcCC
Confidence 56788999999999999999864 35566666665544443332 68999999998775553 35678899
Q ss_pred EEEEeecCCCCCCCHHHHHHHHhccC-CCeEEEEEecC-CCceeccccHHHHHHH--HHHhCCEEEEecCCcccccccCC
Q psy7357 105 SVEPVSVRKDGTIDFSDLETKVKKNK-ETLSCLMITYP-STFGVFEENITDVCEL--IHEHGGQVYLDGANMNAQVGLCR 180 (302)
Q Consensus 105 ~v~~i~~~~~g~iD~~~l~~~i~~~~-~~t~~V~i~~P-n~~G~~~~di~~I~~i--a~~~g~llivD~a~~~~~~~~~~ 180 (302)
+++.++.++++.+|+++++++++++. +++++|+++++ |++|.+. |+++|+++ ||++|+++++|+++..+... .+
T Consensus 109 ~v~~v~~~~~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~-~~~~i~~l~~~~~~g~~~vvD~v~s~g~~~-id 186 (401)
T PLN02409 109 DVDVVESPWGQGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTN-DLAGVRKLLDCAQHPALLLVDGVSSIGALD-FR 186 (401)
T ss_pred ceEEEECCCCCCCCHHHHHHHHhhCcCCCccEEEEEeecccccccC-CHHHHHHHHhhhccCcEEEEEcccccCCcc-cc
Confidence 99999998766789999999998421 27889999886 6899999 79999999 99999999999987544332 24
Q ss_pred CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 181 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 181 p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
..++++|+++.++||||+.| ||+|++++++++++++
T Consensus 187 ~~~~~~D~~~~s~~K~l~~P-----~G~G~l~~~~~~~~~~ 222 (401)
T PLN02409 187 MDEWGVDVALTGSQKALSLP-----TGLGIVCASPKALEAS 222 (401)
T ss_pred ccccCccEEEEcCccccCcC-----CCcceeEECHHHHHHH
Confidence 56789999999999999854 5799999998776554
No 39
>PRK02769 histidine decarboxylase; Provisional
Probab=99.85 E-value=3.7e-20 Score=175.15 Aligned_cols=188 Identities=16% Similarity=0.206 Sum_probs=142.4
Q ss_pred CCCCCCcccccHHHHHHHHHHHHHHHhCCCeee---EeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH
Q psy7357 21 HPFIPQDQARGYEQLIGELETDLCEITGYDKIS---FQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA 97 (302)
Q Consensus 21 ~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~~~---~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~ 97 (302)
.|+......+.+.+..+++.+++++++|++... +++++|++++..++.+.|.+ .++++|++++.+|.+...
T Consensus 52 np~~~~~~g~~~~~~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~~------~~~~~ii~s~~~H~Sv~k 125 (380)
T PRK02769 52 DPYSKSNYPLNSFDFERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLAREL------FPDGTLYYSKDTHYSVSK 125 (380)
T ss_pred CccccCCCCCChHHHHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHHh------CCCcEEEeCCCceehHHH
Confidence 344332233467889999999999999997432 34455566654444333322 357899999999999888
Q ss_pred HHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCC-CceeccccHHHHHHHHHHhC---CEEEEecCCcc
Q psy7357 98 SAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPS-TFGVFEENITDVCELIHEHG---GQVYLDGANMN 173 (302)
Q Consensus 98 ~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~g---~llivD~a~~~ 173 (302)
.++..|.+.+.||++++|.+|+++|++++++.+.+|.+|+++.+| .+|.++ |+++|+++|+++| +++++|+|+..
T Consensus 126 a~~~lg~~~~~V~~~~~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~id-pi~~I~~i~~~~g~~~~~lHVDaA~gg 204 (380)
T PRK02769 126 IARLLRIKSRVITSLPNGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAID-NIKEIQEILKKIGIDDYYIHADAALSG 204 (380)
T ss_pred HHHHcCCCCceeccCCCCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccC-CHHHHHHHHHHhCCCceEEEEEecccc
Confidence 888889999999998899999999999998443358888888875 799999 8999999999998 69999999855
Q ss_pred ccccc------CCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 174 AQVGL------CRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 174 ~~~~~------~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
....+ .+.. .++|.++.++||+++.| .+.|+++++++..+.+
T Consensus 205 ~~~p~~~~~~~~d~~-~~vDsis~s~HK~~~~P-----~g~G~l~~r~~~~~~~ 252 (380)
T PRK02769 205 MILPFVNNPPPFSFA-DGIDSIAISGHKFIGSP-----MPCGIVLAKKKYVERI 252 (380)
T ss_pred eeecccCccccCCcc-CCCCEEEECCcccCCCC-----CCcEEEEEehhhhhhc
Confidence 44321 1112 28999999999988755 2688999998766554
No 40
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=99.84 E-value=5.8e-19 Score=169.50 Aligned_cols=178 Identities=17% Similarity=0.213 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHHHHhCCC-eeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCE
Q psy7357 32 YEQLIGELETDLCEITGYD-KISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMS 105 (302)
Q Consensus 32 ~l~~~~e~~~~l~~l~g~~-~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~ 105 (302)
..+.++++++.+++++|++ ..++..++|+ ++...++.++. + ...+++|+|+++++.|++... .++..|++
T Consensus 74 ~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~al~~i~~~~~-~---~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~ 149 (424)
T PLN02855 74 ATDAYELARKKVAAFINASTSREIVFTRNATEAINLVAYTWG-L---ANLKPGDEVILSVAEHHSNIVPWQLVAQKTGAV 149 (424)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEeCCHHHHHHHHHHHhh-h---hcCCCcCEEEECCCccHHHHHHHHHHHHHcCCE
Confidence 3456789999999999995 3445555554 44322222210 0 001578999999999876532 35678999
Q ss_pred EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCcc
Q psy7357 106 VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDY 184 (302)
Q Consensus 106 v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~ 184 (302)
++.+|+++++.+|++++++.++ ++|++|++++| |++|.+. |+++|+++||++|+++++|+++..+...+ +..++
T Consensus 150 v~~v~~~~~~~~~~~~l~~~i~---~~t~lv~i~~~~n~tG~~~-~~~~I~~l~~~~g~~vivD~a~~~g~~~~-~~~~~ 224 (424)
T PLN02855 150 LKFVGLTPDEVLDVEQLKELLS---EKTKLVATHHVSNVLGSIL-PVEDIVHWAHAVGAKVLVDACQSVPHMPV-DVQTL 224 (424)
T ss_pred EEEEecCCCCCcCHHHHHHHhc---cCceEEEEeCccccccccC-CHHHHHHHHHHcCCEEEEEhhhhcCCcCC-Cchhc
Confidence 9999998778899999999998 78999999998 5899999 79999999999999999999986554433 34567
Q ss_pred CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCC
Q psy7357 185 GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVH 224 (302)
Q Consensus 185 gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~ 224 (302)
++|++++++|| +..| +|+|++++++++.++++..
T Consensus 225 ~~d~~~~s~~K-~~gp-----~G~G~l~~~~~~~~~~~p~ 258 (424)
T PLN02855 225 GADFLVASSHK-MCGP-----TGIGFLWGKSDLLESMPPF 258 (424)
T ss_pred CCCEEEeeccc-ccCC-----CccEEEEEchhhhhcCCCE
Confidence 89999999999 4322 4799999999888777644
No 41
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=99.84 E-value=3.8e-20 Score=169.53 Aligned_cols=167 Identities=20% Similarity=0.189 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCC
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRK 113 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~ 113 (302)
..+.++|+.+++++|.+.+.+.+++++.++.++++++. +++|+|+++++.|.+....+...|.++++++.+.
T Consensus 59 g~i~~~~~~~A~~~ga~~~~~~~~Gst~a~~~~l~al~--------~~gd~Vlv~~~~h~s~~~~~~~~g~~~~~v~~~~ 130 (294)
T cd00615 59 GPIKEAQELAARAFGAKHTFFLVNGTSSSNKAVILAVC--------GPGDKILIDRNCHKSVINGLVLSGAVPVYLKPER 130 (294)
T ss_pred hHHHHHHHHHHHHhCCCCEEEEcCcHHHHHHHHHHHcC--------CCCCEEEEeCCchHHHHHHHHHCCCEEEEecCcc
Confidence 35899999999999998766555555566656665543 6899999999999887777788899999998753
Q ss_pred C------CCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCcccc--cc-c-CCCCc
Q psy7357 114 D------GTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQ--VG-L-CRPGD 183 (302)
Q Consensus 114 ~------g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~--~~-~-~~p~~ 183 (302)
+ +.+|+++++++++++ +++++|++++||++|.+. |+++|+++||++|+++++|+++.... .. + .....
T Consensus 131 ~~~~~~~~~i~~~~l~~~l~~~-~~~k~v~l~~p~~~G~~~-dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~ 208 (294)
T cd00615 131 NPYYGIAGGIPPETFKKALIEH-PDAKAAVITNPTYYGICY-NLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAM 208 (294)
T ss_pred CcccCcCCCCCHHHHHHHHHhC-CCceEEEEECCCCCCEec-CHHHHHHHHHhcCCeEEEECcchhhhccCcccCcchhh
Confidence 2 378999999999743 578999999999999999 89999999999999999999974321 11 1 12234
Q ss_pred cCCcEEEeCCCcccCCCCCCCCC-cceeEEEeCC
Q psy7357 184 YGSDVSHLNLHKTFCIPHGGGGP-GMGPIGVKSH 216 (302)
Q Consensus 184 ~gaDiv~~~~hK~l~~p~~~gGp-~~G~l~~~~~ 216 (302)
+++|+++.|+||+++ || +.|++.++++
T Consensus 209 ~~~div~~S~hK~l~------g~~~~~~l~~~~~ 236 (294)
T cd00615 209 AGADIVVQSTHKTLP------ALTQGSMIHVKGD 236 (294)
T ss_pred cCCcEEEEchhcccc------hHhHHHHHHhCCC
Confidence 689999999999875 55 4577777655
No 42
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=99.84 E-value=2.5e-20 Score=177.19 Aligned_cols=179 Identities=20% Similarity=0.228 Sum_probs=137.0
Q ss_pred cccHHHHHHHHHHHHHHHhCCCe--e-eEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYDK--I-SFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~--~-~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~ 104 (302)
++|..++++.+.+.+.+.+|.+. . ++..+.|+ +|...+++++. ++||+|++++|.|.+|.......|.
T Consensus 64 ~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~~~~a~~--------~pGDeVlip~P~Y~~y~~~~~~~gg 135 (393)
T COG0436 64 SAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFLALL--------NPGDEVLIPDPGYPSYEAAVKLAGG 135 (393)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHHHHHHhc--------CCCCEEEEeCCCCcCHHHHHHhcCC
Confidence 78999999999999999998543 2 37777776 55544555544 7999999999999999999999999
Q ss_pred EEEEeecC---CCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceec--cccHHHHHHHHHHhCCEEEEecCCc-ccccc
Q psy7357 105 SVEPVSVR---KDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVF--EENITDVCELIHEHGGQVYLDGANM-NAQVG 177 (302)
Q Consensus 105 ~v~~i~~~---~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~--~~di~~I~~ia~~~g~llivD~a~~-~~~~~ 177 (302)
+++.+|++ .+..+|+++|+++++ ++|++|++++| ||||.+ .+.+++|+++|++||++++.|.++. +...+
T Consensus 136 ~~v~v~l~~~~~~f~~d~~~l~~~i~---~ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~ 212 (393)
T COG0436 136 KPVPVPLDEEENGFKPDLEDLEAAIT---PKTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDG 212 (393)
T ss_pred EEEEEeCCcCccCCcCCHHHHHhhcC---ccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCC
Confidence 99999975 257899999999999 79999999999 599987 2369999999999999999999862 11211
Q ss_pred --cCCCCccC--Cc--EEEeCCCcccCCCCCCCCCcceeEEEe-CCCCCCCC
Q psy7357 178 --LCRPGDYG--SD--VSHLNLHKTFCIPHGGGGPGMGPIGVK-SHLAPFLP 222 (302)
Q Consensus 178 --~~~p~~~g--aD--iv~~~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~lp 222 (302)
..+..+.. .| |.+.|.+|+++ +.|||+||++++ +++++.+.
T Consensus 213 ~~~~s~~~~~~~~~~~i~i~s~SK~~~----mtGwRvG~~v~~~~~l~~~~~ 260 (393)
T COG0436 213 AEHPSILELAGARDRTITINSFSKTYG----MTGWRIGWVVGPPEELIAALR 260 (393)
T ss_pred CCcCCHhhcCCCcceEEEEeccccccc----ccccceeEeecChHHHHHHHH
Confidence 11111111 12 44445566555 569999999999 66655543
No 43
>KOG1549|consensus
Probab=99.84 E-value=2.2e-20 Score=174.19 Aligned_cols=173 Identities=18% Similarity=0.288 Sum_probs=140.3
Q ss_pred ccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH---HHhCCCEE
Q psy7357 30 RGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS---AQMAGMSV 106 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~---~~~~g~~v 106 (302)
......+++.|+.++++.|+|..+++.++|++ | +..++++.+....+.+..++||+...+|++.... .+..|++|
T Consensus 81 w~~~~~~E~aR~~VAklInAd~~dIiFts~AT-E-s~Nlvl~~v~~~~~~~~~k~iitl~~eH~~v~~s~~~l~~~g~~V 158 (428)
T KOG1549|consen 81 WKAEDAVEAAREQVAKLINADPSDIVFTSGAT-E-SNNLVLKGVARFFGDKTKKHIITLQTEHPCVLDSCRALQEEGLEV 158 (428)
T ss_pred hhhhHHHHHHHHHHHHHhCCCCCcEEEeCCch-H-HHHHHHHHhhccccccccceEEEecccCcchhHHHHHHHhcCeEE
Confidence 34445589999999999999987787777774 2 5566666653322221222899999999987653 45779999
Q ss_pred EEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccC
Q psy7357 107 EPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYG 185 (302)
Q Consensus 107 ~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~g 185 (302)
+++|++.+|.+|++.+++.|+ ++|++|.+..- |..|+++ |++||.++|++.|+.|++|+||.++...+ +..+++
T Consensus 159 t~lpv~~~~~~d~~~~~~~i~---~~T~lv~I~~Vnn~~gv~~-Pv~EI~~icr~~~v~v~~DaAQavG~i~v-DV~eln 233 (428)
T KOG1549|consen 159 TYLPVEDSGLVDISKLREAIR---SKTRLVSIMHVNNEIGVLQ-PVKEIVKICREEGVQVHVDAAQAVGKIPV-DVQELN 233 (428)
T ss_pred EEeccCccccccHHHHHHhcC---CCceEEEEEecccCccccc-cHHHHHHHhCcCCcEEEeehhhhcCCccc-cHHHcC
Confidence 999999889999999999999 89998888775 5789999 79999999999999999999997777664 667899
Q ss_pred CcEEEeCCCcccCCCCCCCCCcceeEEEeC
Q psy7357 186 SDVSHLNLHKTFCIPHGGGGPGMGPIGVKS 215 (302)
Q Consensus 186 aDiv~~~~hK~l~~p~~~gGp~~G~l~~~~ 215 (302)
+|+++.++||+++ -|++|++++++
T Consensus 234 ~D~~s~s~HK~yg------p~~iGaLYvr~ 257 (428)
T KOG1549|consen 234 ADFLSISAHKIYG------PPGIGALYVRR 257 (428)
T ss_pred chheeeecccccC------CCcceEEEEcc
Confidence 9999999999886 24699999996
No 44
>KOG0257|consensus
Probab=99.84 E-value=1.7e-20 Score=173.09 Aligned_cols=187 Identities=22% Similarity=0.222 Sum_probs=149.5
Q ss_pred ccCCcCCccCCCCCCCcccccHHHHHHHHHHHHHHHhCCCe---eeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEE
Q psy7357 11 PCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDK---ISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCL 86 (302)
Q Consensus 11 ~~~~~~ft~~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~---~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vl 86 (302)
.++.+.++.|++ ..|..++...+++++++++|... .++..++|+ ++...+++++. ++||+|+
T Consensus 56 ~~~~~~~~qYt~------~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~--------~~GDeVi 121 (420)
T KOG0257|consen 56 AAKEPSTNQYTR------GYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLL--------NPGDEVI 121 (420)
T ss_pred Hhccchhccccc------cCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHc--------CCCCEEE
Confidence 344444455554 57899999999999999888543 367778888 55544555544 7999999
Q ss_pred EcCCCCcccHHHHHhCCCEEEEeecC--------CCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceec--cccHHHHH
Q psy7357 87 IPVSAHGTNPASAQMAGMSVEPVSVR--------KDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVF--EENITDVC 155 (302)
Q Consensus 87 v~~~~hg~~~~~~~~~g~~v~~i~~~--------~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~--~~di~~I~ 155 (302)
|.+|.|..|.....+.|.+++.+|.. +++.+|.++++.+++ ++|++|++++| |++|.+ .+.+++|+
T Consensus 122 i~eP~fd~Y~~~~~maG~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t---~kTk~Ii~ntPhNPtGkvfsReeLe~ia 198 (420)
T KOG0257|consen 122 VFEPFFDCYIPQVVMAGGTPVFVPLKPKEGNVSSSDWTLDPEELESKIT---EKTKAIILNTPHNPTGKVFSREELERIA 198 (420)
T ss_pred EecCcchhhhhHHhhcCCcceeeccccccccccCccccCChHHHHhhcc---CCccEEEEeCCCCCcCcccCHHHHHHHH
Confidence 99999999988999999999999976 256899999999999 89999999999 699976 33699999
Q ss_pred HHHHHhCCEEEEecCCc---------ccccccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCC
Q psy7357 156 ELIHEHGGQVYLDGANM---------NAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPF 220 (302)
Q Consensus 156 ~ia~~~g~llivD~a~~---------~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~ 220 (302)
++|++||.++|.|+++- .....+ |+.+..-+-++|.+|+|+ +.||++|+++.++.+...
T Consensus 199 ~l~~k~~~lvisDevYe~~v~d~~~h~r~asl--Pgm~ertitvgS~gKtf~----~TGWrlGW~igp~~L~~~ 266 (420)
T KOG0257|consen 199 ELCKKHGLLVISDEVYEWLVYDGNKHIRIASL--PGMYERTITVGSFGKTFG----VTGWRLGWAIGPKHLYSA 266 (420)
T ss_pred HHHHHCCEEEEEhhHhHHHhhCCCcceeeecC--CchhheEEEeccccceee----eeeeeeeeeechHHhhhh
Confidence 99999999999998852 222222 787877888898899987 459999999997766554
No 45
>PLN03032 serine decarboxylase; Provisional
Probab=99.84 E-value=2.5e-19 Score=168.74 Aligned_cols=180 Identities=17% Similarity=0.176 Sum_probs=138.0
Q ss_pred ccHHHHHHHHHHHHHHHhCCCeee---EeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEE
Q psy7357 30 RGYEQLIGELETDLCEITGYDKIS---FQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSV 106 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~~~---~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v 106 (302)
....++..++.+++++++|++... +++++|++|+..++.+.|.. .++.+|++++.+|.+....++..|.++
T Consensus 62 ~~a~~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ar~~------~~~~~vi~s~~~H~Sv~kaa~~lg~~~ 135 (374)
T PLN03032 62 VHSRQFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGREV------FPDGILYASRESHYSVFKAARMYRMEA 135 (374)
T ss_pred ccHHHHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHHHHHh------CCCcEEEeCCCceeHHHHHHHHcCCCC
Confidence 478899999999999999997543 45556666664444443321 244689999999988888888899999
Q ss_pred EEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhC-----CEEEEecCCcccccccC-
Q psy7357 107 EPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHG-----GQVYLDGANMNAQVGLC- 179 (302)
Q Consensus 107 ~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g-----~llivD~a~~~~~~~~~- 179 (302)
+.||++++|.+|+++|+++|+++..++.+|+++.. |.+|.++ |+++|+++|+++| +++++|+|+..+...+.
T Consensus 136 ~~V~~d~~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~id-pi~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~ 214 (374)
T PLN03032 136 VKVPTLPSGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVD-DLDRILRILKELGYTEDRFYIHCDGALFGLMMPFVS 214 (374)
T ss_pred eEeeeCCCCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCC-CHHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccC
Confidence 99999999999999999999843335777777665 4899999 7999999999997 48999998754433320
Q ss_pred -C---CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 180 -R---PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 180 -~---p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
. ....++|.++.++||.++.|. ++|++++++++.+.+
T Consensus 215 ~~~~~~~~~~vDSis~s~HK~~g~P~-----g~G~ll~r~~~~~~~ 255 (374)
T PLN03032 215 RAPEVTFRKPIGSVSVSGHKFLGCPM-----PCGVALTRKKHVKAL 255 (374)
T ss_pred CCcccCCCcCCcEEEECcccccCCCc-----CeEEEEEEchhhHhh
Confidence 0 112468999999999776553 678999997665544
No 46
>PRK02948 cysteine desulfurase; Provisional
Probab=99.83 E-value=2.8e-18 Score=162.27 Aligned_cols=172 Identities=17% Similarity=0.283 Sum_probs=134.5
Q ss_pred cHHHHHHHHHHHHHHHhCCCeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH---HHhCCCEE
Q psy7357 31 GYEQLIGELETDLCEITGYDKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS---AQMAGMSV 106 (302)
Q Consensus 31 G~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~---~~~~g~~v 106 (302)
-..+.++++++.+++++|.+..++..++|+ +++..++.++.. .. .+++++|++++..|+++..+ ++..|+++
T Consensus 40 ~~~~~~~~~r~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~---~~-~~~g~~vv~~~~~h~s~~~~~~~~~~~g~~v 115 (381)
T PRK02948 40 TASSLLQVCRKTFAEMIGGEEQGIYFTSGGTESNYLAIQSLLN---AL-PQNKKHIITTPMEHASIHSYFQSLESQGYTV 115 (381)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHH---hc-cCCCCEEEECCcccHHHHHHHHHHHhCCCEE
Confidence 345678999999999999877666555554 554344433321 11 13578999999999877553 45679999
Q ss_pred EEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccC
Q psy7357 107 EPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYG 185 (302)
Q Consensus 107 ~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~g 185 (302)
+.+|+++++.+|+++|++.++ +++++|++++| |++|.+. |+++|.++|+++|+++++|+++..+...+ +..+++
T Consensus 116 ~~v~~~~~~~~d~~~l~~~l~---~~~~lv~~~~~~n~tG~~~-~~~~I~~l~~~~~~~vivD~~~~~g~~~~-~~~~~~ 190 (381)
T PRK02948 116 TEIPVDKSGLIRLVDLERAIT---PDTVLASIQHANSEIGTIQ-PIAEIGALLKKYNVLFHSDCVQTFGKLPI-DVFEMG 190 (381)
T ss_pred EEEeeCCCCCCCHHHHHHhcC---CCCEEEEEECCcCCcEeeh-hHHHHHHHHHHcCCEEEEEChhhcccccc-CcccCC
Confidence 999998889999999999997 78899999998 5899999 79999999999999999998875554332 345678
Q ss_pred CcEEEeCCCcccCCCCCCCCCcceeEEEeCCC
Q psy7357 186 SDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHL 217 (302)
Q Consensus 186 aDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l 217 (302)
+|+++.++||+++ | +|+|++++++++
T Consensus 191 ~d~~~~s~~K~~g-p-----~G~G~l~~~~~~ 216 (381)
T PRK02948 191 IDSLSVSAHKIYG-P-----KGVGAVYINPQV 216 (381)
T ss_pred CCEEEecHHhcCC-C-----CcEEEEEEcCCC
Confidence 9999999999764 3 468999998765
No 47
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=99.83 E-value=3.4e-19 Score=170.03 Aligned_cols=174 Identities=17% Similarity=0.296 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHHHHhCCCeeeEeeC-chHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH---HHhCCCEEEE
Q psy7357 33 EQLIGELETDLCEITGYDKISFQPN-SGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS---AQMAGMSVEP 108 (302)
Q Consensus 33 l~~~~e~~~~l~~l~g~~~~~~~~~-~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~---~~~~g~~v~~ 108 (302)
.+.++++++.+++++|++...+... +|+.++..++.++.... .+++++|++++.+|+++... ++..|++++.
T Consensus 46 ~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~----~~~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v~~ 121 (402)
T TIGR02006 46 EEAVENARNQVAELIGADSREIVFTSGATESNNLAIKGIAHFY----KSKGNHIITSKTEHKAVLDTCRYLEREGFEVTY 121 (402)
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhh----cCCCCEEEECCCccHHHHHHHHHHHhcCCEEEE
Confidence 4678899999999999976545444 44556544444443211 14688999999998876543 3457999999
Q ss_pred eecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCc
Q psy7357 109 VSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSD 187 (302)
Q Consensus 109 i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaD 187 (302)
+|+++++.+|+++++++++ +++++|+++++ |++|.+. |+++|+++||++|+++++|+++..+...+ +..++++|
T Consensus 122 v~~~~~~~~d~~~l~~~l~---~~~~lv~v~~~~n~tG~~~-~~~~I~~l~~~~g~~livD~a~a~g~~~~-~~~~~~~D 196 (402)
T TIGR02006 122 LPPKSNGLIDLEELKAAIR---DDTILVSIMHVNNEIGVIQ-DIAAIGEICRERKVFFHVDAAQSVGKIPI-NVNELKVD 196 (402)
T ss_pred EccCCCCcCCHHHHHHhcC---CCCEEEEEECCCcCceecc-cHHHHHHHHHHcCCEEEEEcchhcCCccc-CccccCCC
Confidence 9998889999999999997 67899999998 5899999 79999999999999999999986554432 44567899
Q ss_pred EEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 188 VSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 188 iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
++++++||.++ | +|+|+++++++...++
T Consensus 197 ~~~~s~~K~~g-p-----~G~G~l~~~~~~~~~~ 224 (402)
T TIGR02006 197 LMSISGHKIYG-P-----KGIGALYVRRKPRVRL 224 (402)
T ss_pred EEEEehhhhcC-C-----CceEEEEEccCCCCCC
Confidence 99999999653 2 4799999997655444
No 48
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=99.83 E-value=1.4e-19 Score=170.08 Aligned_cols=172 Identities=19% Similarity=0.279 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCC
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRK 113 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~ 113 (302)
....++++.+++++|++.. +...+|++++..++.++. +++|+|+++++.|.+....++..|++++.+|.++
T Consensus 44 ~~~~~l~~~la~~~g~~~i-~~~~g~t~al~~~l~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~ 114 (361)
T cd06452 44 PPIKDFHHDLAEFLGMDEA-RVTPGAREGKFAVMHSLC--------EKGDWVVVDGLAHYTSYVAAERAGLNVREVPNTG 114 (361)
T ss_pred chHHHHHHHHHHHcCCceE-EEeCCHHHHHHHHHHHhc--------CCCCEEEEcCCcchHHHHHHHhcCCEEEEEecCC
Confidence 5688999999999999543 333444455544444432 6789999998888666666788999999999987
Q ss_pred CC--CCCHHHHHHHHhccC----CCeEEEEEecCC-CceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCC
Q psy7357 114 DG--TIDFSDLETKVKKNK----ETLSCLMITYPS-TFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGS 186 (302)
Q Consensus 114 ~g--~iD~~~l~~~i~~~~----~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~ga 186 (302)
++ .+|++++++++++.. +++++|++++|| ++|.+. |+++|.++|+++|+++++|+++..+... ..+.++++
T Consensus 115 ~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~-~~~~i~~~~~~~~~~vivD~a~~~g~~~-~~~~~~~~ 192 (361)
T cd06452 115 HPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLH-DAKKIAKVCHEYGVPLLLNGAYTVGRMP-VSGKELGA 192 (361)
T ss_pred CCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeec-cHHHHHHHHHHcCCeEEEECCcccCCcC-CCHHHcCC
Confidence 65 899999999997321 368999999995 799998 8999999999999999999997543222 23446789
Q ss_pred cEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 187 DVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 187 Div~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
|+++.++||+|+. ++++|++++++++++++
T Consensus 193 d~~~~s~~K~l~~-----~~~~G~l~~~~~~~~~l 222 (361)
T cd06452 193 DFIVGSGHKSMAA-----SAPIGVLATTEEWADIV 222 (361)
T ss_pred CEEEecCCccccC-----CCCeEEEEECHHHHHHH
Confidence 9999999999973 35899999998776655
No 49
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=99.83 E-value=1.9e-19 Score=169.27 Aligned_cols=175 Identities=15% Similarity=0.179 Sum_probs=133.5
Q ss_pred cHHHHHHHHHHHHHHHhCCCe---eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCE-EEEcCCCCccc-HHHHHhCCCE
Q psy7357 31 GYEQLIGELETDLCEITGYDK---ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNV-CLIPVSAHGTN-PASAQMAGMS 105 (302)
Q Consensus 31 G~l~~~~e~~~~l~~l~g~~~---~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~-Vlv~~~~hg~~-~~~~~~~g~~ 105 (302)
.+.+.++++++.+++++|++. ..+.+.+|+.+..+++.++. .++++ |++.+..|+.. ...++..|++
T Consensus 32 ~~~~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l~--------~~~~~vlv~~~~~~~~~~~~~a~~~g~~ 103 (363)
T TIGR02326 32 DYNIVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSAV--------PKDGKLLVVINGAYGARIVQIAEYLGIP 103 (363)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhcC--------CCCCeEEEEeCChhhHHHHHHHHHcCCc
Confidence 577889999999999999964 23455666777655555543 34454 55566666654 3456788999
Q ss_pred EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCcc
Q psy7357 106 VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDY 184 (302)
Q Consensus 106 v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~ 184 (302)
++.+|+++++.+|+++++++++++ ++++.|.++++ |++|++. |+++|+++||++|+++++|+++..+... .+..++
T Consensus 104 ~~~v~~~~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~~~tG~~~-~i~~I~~l~~~~g~~livD~~~~~g~~~-~~~~~~ 180 (363)
T TIGR02326 104 HHVVDTGEVEPPDVVEVEAILAAD-PAITHIALVHCETTTGILN-PIEAVAKLAHRHGKVTIVDAMSSFGGIP-IDIAEL 180 (363)
T ss_pred eEEEeCCCCCCCCHHHHHHHHhhC-CCccEEEEEeecCCccccC-cHHHHHHHHHHcCCEEEEEccccccCcc-cchhhc
Confidence 999999888899999999999743 35566666664 6899999 7999999999999999999987543322 244567
Q ss_pred CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 185 GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 185 gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
++|++++++||+|+.| ||+|+++++++.++++
T Consensus 181 ~~D~~~~s~~K~l~~p-----~G~G~l~~~~~~~~~~ 212 (363)
T TIGR02326 181 HIDYLISSANKCIQGV-----PGFGFVIARQAELAAC 212 (363)
T ss_pred CccEEEecCccccccC-----CcceEEEECHHHHHHh
Confidence 8999999999999743 6889999998766544
No 50
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=99.83 E-value=3.1e-19 Score=168.68 Aligned_cols=172 Identities=13% Similarity=0.271 Sum_probs=133.5
Q ss_pred ccHHHHHHHHHHHHHHHhCCCeeeEe-eCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH---HHHhCCCE
Q psy7357 30 RGYEQLIGELETDLCEITGYDKISFQ-PNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA---SAQMAGMS 105 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~~~~~-~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~---~~~~~g~~ 105 (302)
+-+.+.++++++++++++|.+...+. ..+|++++..++.++... ..++++|++++..|+++.. .++..|++
T Consensus 38 ~~~~~~~~~~r~~la~~~g~~~~~i~~t~~~t~a~~~al~~~~~~-----~~~~~~vv~~~~~~~s~~~~~~~~~~~G~~ 112 (379)
T TIGR03402 38 GEVGKAVEEAREQVAKLLGAEPDEIIFTSGGTESDNTAIKSALAA-----QPEKRHIITTAVEHPAVLSLCQHLEKQGYK 112 (379)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHh-----cCCCCeEEEcccccHHHHHHHHHHHHcCCE
Confidence 44577899999999999999865444 445556554444443311 1346889999989877643 23457999
Q ss_pred EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCcc
Q psy7357 106 VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDY 184 (302)
Q Consensus 106 v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~ 184 (302)
++.+|.+++|.+|+++++++++ +++++|+++++ |++|.+. |+++|+++||++|+++++|+++..+...+ +..++
T Consensus 113 v~~v~~~~~g~~~~~~l~~~i~---~~~~lv~i~~~~n~tG~~~-~~~~I~~l~~~~g~~vivD~~~~~g~~~~-~~~~~ 187 (379)
T TIGR03402 113 VTYLPVDEEGRLDLEELRAAIT---DDTALVSVMWANNETGTIF-PIEEIGEIAKERGALFHTDAVQAVGKIPI-DLKEM 187 (379)
T ss_pred EEEEccCCCCcCCHHHHHHhcC---CCcEEEEEEcccCCeeecc-cHHHHHHHHHHcCCEEEEECccccccccc-CcccC
Confidence 9999998888999999999998 78899999987 5899999 79999999999999999999986544332 44568
Q ss_pred CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCC
Q psy7357 185 GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHL 217 (302)
Q Consensus 185 gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l 217 (302)
++|++++++|| +..| +|+|+++++++.
T Consensus 188 ~~D~~~~s~~K-~~gp-----~G~g~l~v~~~~ 214 (379)
T TIGR03402 188 NIDMLSLSGHK-LHGP-----KGVGALYIRKGT 214 (379)
T ss_pred CCCEEEEcHHH-cCCC-----CceEEEEECCCC
Confidence 99999999999 5533 479999998754
No 51
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=99.83 E-value=1.1e-18 Score=164.42 Aligned_cols=167 Identities=16% Similarity=0.217 Sum_probs=127.5
Q ss_pred cHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCC---------------EEEEcCCCCccc
Q psy7357 31 GYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRN---------------VCLIPVSAHGTN 95 (302)
Q Consensus 31 G~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d---------------~Vlv~~~~hg~~ 95 (302)
+..+.++++++++++++|.+.+ +...+++.|+..+++++. ++|| +|+++.+.+..+
T Consensus 42 ~~~~~~~~~~~~~a~~~g~~~~-~~~~g~t~al~~al~al~--------~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~ 112 (363)
T TIGR01437 42 EIKELVNKTGEYIANLLGVEDA-VIVSSASAGIAQSVAAVI--------TRGNRYLVENLHDSKIEVNEVVLPKGHNVDY 112 (363)
T ss_pred CHHHHHHHHHHHHHHhhCCCeE-EEEcCHHHHHHHHHHHHh--------cCCCcchhhcccccccccceEEEECccchhc
Confidence 3557889999999999999865 556667777656666553 3455 888887533322
Q ss_pred ----HHHHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEE-EecC-CCceeccccHHHHHHHHHHhCCEEEEec
Q psy7357 96 ----PASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLM-ITYP-STFGVFEENITDVCELIHEHGGQVYLDG 169 (302)
Q Consensus 96 ----~~~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~-i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~ 169 (302)
.......|+++++++. ++.+|+++++++++ ++|++++ +++| |++|.+. |+++|+++||++|+++++|+
T Consensus 113 ~~~~~~~~~~~g~~~v~v~~--~~~~d~~~le~ai~---~~t~ai~~v~~~~~~~g~~~-~~~~i~~~a~~~gi~vivD~ 186 (363)
T TIGR01437 113 GAPVETMVRLGGGKVVEAGY--ANECSAEQLEAAIT---EKTAAILYIKSHHCVQKSML-SVEDAAQVAQEHNLPLIVDA 186 (363)
T ss_pred CCchHHHHHhcCCeEEEEcC--CCCCCHHHHHHhcC---hhceEEEEEecCCCCcCCcC-CHHHHHHHHHHcCCeEEEEC
Confidence 3456678999999986 35699999999998 7888777 4554 6889888 79999999999999999999
Q ss_pred CCcccccccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 170 ANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 170 a~~~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
+|.. .+..+..+|+|++++|.||+|+ ||.+|+++.++++++.+
T Consensus 187 a~~~---~~~~~~~~g~D~~~~S~~K~l~------gp~~G~l~~~~~~i~~~ 229 (363)
T TIGR01437 187 AAEE---DLQKYYRLGADLVIYSGAKAIE------GPTSGLVLGKKKYIEWV 229 (363)
T ss_pred CCCC---chHHHHHcCCCEEEEeCCcccC------CCceEEEEEcHHHHHHH
Confidence 9852 1122345688999999999885 78889999887666554
No 52
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=99.82 E-value=1.1e-18 Score=166.21 Aligned_cols=165 Identities=22% Similarity=0.221 Sum_probs=125.8
Q ss_pred HHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH-----HHhCCCEEEEeecC
Q psy7357 38 ELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS-----AQMAGMSVEPVSVR 112 (302)
Q Consensus 38 e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~-----~~~~g~~v~~i~~~ 112 (302)
..++.+++++|.+...+.+++|++|+.+++.++. ++||+|+++++.|+.+... ++..|.+++.++++
T Consensus 69 ~~~~~~~~~~g~~~~~v~~~sgt~a~~~~l~~l~--------~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 140 (402)
T cd00378 69 LAIERAKKLFGAEYANVQPHSGSQANLAVYFALL--------EPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYG 140 (402)
T ss_pred HHHHHHHHHhCCCceeeecCCcHHHHHHHHHHhc--------CCCCEEEEecCccCccccccccccccccceeEEEecCC
Confidence 3667889999998877777778877655555553 6899999999998876443 55678877777765
Q ss_pred C---CCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCccccc---ccCCCCccCC
Q psy7357 113 K---DGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQV---GLCRPGDYGS 186 (302)
Q Consensus 113 ~---~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~---~~~~p~~~ga 186 (302)
. ++.+|++++++++.+ +++++|++++|++ |... |+++|+++||++|+++++|++|..+.. ....+.. ++
T Consensus 141 ~~~~~~~id~~~l~~~i~~--~~~~~v~~~~~~~-~~~~-~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~-~~ 215 (402)
T cd00378 141 VDPETGLIDYDALEKMALE--FKPKLIVAGASAY-PRPI-DFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP-GA 215 (402)
T ss_pred cCcccCCcCHHHHHHHHHh--CCCCEEEecCccc-CCCc-CHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc-CC
Confidence 3 578999999999963 4678888888753 6777 799999999999999999998754332 1122223 68
Q ss_pred cEEEeCCCcccCCCCCCCCCcceeEEEeC-CCCCCC
Q psy7357 187 DVSHLNLHKTFCIPHGGGGPGMGPIGVKS-HLAPFL 221 (302)
Q Consensus 187 Div~~~~hK~l~~p~~~gGp~~G~l~~~~-~l~~~l 221 (302)
|+++.++||+|. ||++|++++++ ++.+++
T Consensus 216 dv~~~s~sK~l~------G~~gg~i~~~~~~~~~~l 245 (402)
T cd00378 216 DVVTTTTHKTLR------GPRGGLILTRKGELAKKI 245 (402)
T ss_pred cEEEeccccCCC------CCCceEEEeccHHHHHHH
Confidence 999999999884 78889999886 766554
No 53
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=99.82 E-value=4.2e-19 Score=167.25 Aligned_cols=170 Identities=14% Similarity=0.199 Sum_probs=132.3
Q ss_pred ccHHHHHHHHHHHHHHHhCCCee-eEeeC-chHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCC
Q psy7357 30 RGYEQLIGELETDLCEITGYDKI-SFQPN-SGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAG 103 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~~-~~~~~-~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g 103 (302)
++..+.+.++++.+++++|++.. ++..+ +++++...++.++. +++|+|++++..|+++.. .++..|
T Consensus 40 ~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~~~~~g 111 (376)
T TIGR01977 40 LRASREVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALKGLL--------KEGDHVITTPMEHNSVARPLECLKEQIG 111 (376)
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHhcc--------CCCCEEEECcchhhHHHHHHHHHHHHcC
Confidence 34557889999999999998643 45444 44455434333321 578999999988877643 345669
Q ss_pred CEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCC
Q psy7357 104 MSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPG 182 (302)
Q Consensus 104 ~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~ 182 (302)
.+++.++.++++.+|+++++++++ +++++|++++| |++|.+. |+++|.++||++|+++++|+++..+...+ ...
T Consensus 112 ~~~~~v~~~~~~~~d~~~l~~~~~---~~~~~v~~~~~~n~tG~~~-~~~~i~~l~~~~~~~livD~a~~~g~~~~-~~~ 186 (376)
T TIGR01977 112 VEITIVKCDNEGLISPERIKRAIK---TNTKLIVVSHASNVTGTIL-PIEEIGELAQENGIFFILDAAQTAGVIPI-DMT 186 (376)
T ss_pred cEEEEEecCCCCCcCHHHHHHhcC---CCCeEEEEECCCCCccccC-CHHHHHHHHHHcCCEEEEEhhhccCccCC-Cch
Confidence 999999998888899999999997 78899999998 5899999 79999999999999999999985554433 345
Q ss_pred ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCC
Q psy7357 183 DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHL 217 (302)
Q Consensus 183 ~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l 217 (302)
.+++|++++++||+|+.| +|.|+++++++.
T Consensus 187 ~~~~D~~~~s~~K~l~~p-----~g~g~l~~~~~~ 216 (376)
T TIGR01977 187 ELAIDMLAFTGHKGLLGP-----QGTGGLYIREGI 216 (376)
T ss_pred hcCCCEEEecccccccCC-----CCceEEEEcCCc
Confidence 678999999999999854 367878877653
No 54
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=99.82 E-value=7.7e-18 Score=161.64 Aligned_cols=258 Identities=13% Similarity=0.073 Sum_probs=167.3
Q ss_pred cccHHHHHHHHHHHHHHHhCCC-e--e-eEe-eCchHHHHHHHHHHHHHHHHhh----cC-CCCCEEEEcCCCCcccHHH
Q psy7357 29 ARGYEQLIGELETDLCEITGYD-K--I-SFQ-PNSGAQGEYAGLRAIQCYHQAQ----DA-HHRNVCLIPVSAHGTNPAS 98 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~-~--~-~~~-~~~Ga~a~~a~l~a~~~~~~~~----g~-~~~d~Vlv~~~~hg~~~~~ 98 (302)
+....++.++.++++++++|++ . . ... +++|++|+..++.+++..+..+ +. ..+.+|++++.+|.+....
T Consensus 75 ~~~~~~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~g~~~~~~~ii~s~~~H~sv~ka 154 (431)
T TIGR01788 75 YPQTAEIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVCWEKF 154 (431)
T ss_pred CccHHHHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCcchHHHHHH
Confidence 3445589999999999999997 2 2 222 3555666555554444211110 10 0134799999999888888
Q ss_pred HHhCCCEEEEeecCCC-CCCCHHHHHHHHhccCCCeEEEEEecCC-CceeccccHHHHHHHHHHh------CCEEEEecC
Q psy7357 99 AQMAGMSVEPVSVRKD-GTIDFSDLETKVKKNKETLSCLMITYPS-TFGVFEENITDVCELIHEH------GGQVYLDGA 170 (302)
Q Consensus 99 ~~~~g~~v~~i~~~~~-g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~------g~llivD~a 170 (302)
++..|++++.+|++++ +.+|+++|+++|+ ++|.+|+++..| .+|.++ |+++|+++|+++ |+++++|++
T Consensus 155 ~~~lg~~v~~i~~d~~~~~vd~~~L~~~i~---~~t~lV~~t~g~t~tG~id-pi~~I~~i~~~~~~~~~~~~~~HvDaa 230 (431)
T TIGR01788 155 ARYFDVELREVPMDPGRYVIDPEQVVEAVD---ENTIGVVCILGTTYTGEYE-DVKALNDALDEYNAKTGWDIPIHVDAA 230 (431)
T ss_pred HHHcCceeEEEecCCCceeeCHHHHHHHHh---hCCeEEEEEeCCCCCcccC-CHHHHHHHHHHHHhhhCCCceEEEecc
Confidence 8888999999999876 5899999999998 778888888775 899999 799999999999 999999999
Q ss_pred Cccccc-----cc-CCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCC--CCCC-------CCCCcccCCCC---c
Q psy7357 171 NMNAQV-----GL-CRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSH--LAPF-------LPVHPLSSIDS---S 232 (302)
Q Consensus 171 ~~~~~~-----~~-~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~--l~~~-------lpg~~~~~~~~---~ 232 (302)
+..+.. .. .+....++|.++.++||++..| .++|+++++++ +.+. +.+.....+.+ +
T Consensus 231 q~g~~~p~~~~~~~~~~~~~~~DSis~s~HK~~~~P-----~g~G~l~~r~~~~l~~~~~~~~~yl~~~~~~~t~~~sR~ 305 (431)
T TIGR01788 231 SGGFIAPFVYPDLEWDFRLPRVKSINVSGHKYGLVY-----PGVGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRP 305 (431)
T ss_pred cHHHHHHHhCCCchhhcCCCCceEEEECchhccCCC-----CCcEEEEEeChHHcchhheecccccCCCCCCcceecCch
Confidence 852221 11 1123457899999999987644 37899999864 3332 22211000000 1
Q ss_pred chhhhHHHHhhHh------h---HHHHH---HHHH-HHh--cccccccccCCCcceeEEEEEEeccccccCCCCHHHHHH
Q psy7357 233 IGAVSAAHYGSAS------I---LPISW---AYIR-RLE--SHYKTLFRSSRSGLVAHEFVIDVRDFKKSANIEAVDIAK 297 (302)
Q Consensus 233 l~~~~a~~~~~~~------~---~~~~~---~y~~-~l~--~g~~~~~~~~~~~~~~he~~~~~~~~~~~~g~~~~~~~~ 297 (302)
-.... +.|..+. + .+.+. .|+. +|. ++|+++.+++. ++.+.++.++.. +.+.+..++.+
T Consensus 306 g~~al-~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~~~----~~iV~Fr~~~~~-~~~~~~~~l~~ 379 (431)
T TIGR01788 306 ANQVI-AQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEIISDGSG----IPLVAFKLKDDA-DPGYTLYDLSH 379 (431)
T ss_pred HHHHH-HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCCCC----ceEEEEEeCCCC-CCCcCHHHHHH
Confidence 01111 2555532 1 11111 3443 565 46888643244 788888776421 12467788888
Q ss_pred Hhhc
Q psy7357 298 RLMD 301 (302)
Q Consensus 298 ~l~~ 301 (302)
+|-+
T Consensus 380 ~L~~ 383 (431)
T TIGR01788 380 RLRE 383 (431)
T ss_pred HHHH
Confidence 8754
No 55
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=99.82 E-value=3.7e-19 Score=168.05 Aligned_cols=179 Identities=17% Similarity=0.238 Sum_probs=139.9
Q ss_pred cccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEE
Q psy7357 29 ARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEP 108 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~ 108 (302)
.+|....+.++++.+++++|++.+.+ ..+|.+++.+++.++. +++|+|+++.+.|.+....++..|++++.
T Consensus 46 ~~~~~~~~~~~~e~lA~~~g~~~~~i-~~g~~~a~~~~~~~l~--------~~gd~Vl~~~~~h~s~~~~~~~~g~~~~~ 116 (370)
T TIGR02539 46 DQITKPPIHDFLEDLAEFLGMDEARV-THGAREGKFAVMHALC--------KEGDWVVLDGLAHYTSYVAAERAGLNVKE 116 (370)
T ss_pred ccccchHHHHHHHHHHHHhCCCceEE-ECChHHHHHHHHHHhh--------CCCCEEEECCcccHHHHHHHHHcCCEEEE
Confidence 45566678899999999999987665 4556676655555553 67899999888876655667889999999
Q ss_pred eecCC--CCCCCHHHHHHHHhcc----CCCeEEEEEecCC-CceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCC
Q psy7357 109 VSVRK--DGTIDFSDLETKVKKN----KETLSCLMITYPS-TFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRP 181 (302)
Q Consensus 109 i~~~~--~g~iD~~~l~~~i~~~----~~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p 181 (302)
+|.++ ++.+|+++|++++++. .+++++|++++|+ ++|.+. |+++|.++|+++|+++++|++|..+..+. ..
T Consensus 117 ~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~-~l~~i~~la~~~~~~livDea~~~g~~~~-~~ 194 (370)
T TIGR02539 117 VPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLP-DAGKVAKVCREKGVPLLLNCAYTVGRMPV-SA 194 (370)
T ss_pred EecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCcccc-CHHHHHHHHHHcCCeEEEECccccCCcCC-CH
Confidence 99863 4789999999999632 1367899999995 899999 89999999999999999999986542221 23
Q ss_pred CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 182 GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 182 ~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
..+++|+++.++||+++. |.++|++++++++++.+..
T Consensus 195 ~~~~~di~v~s~sK~~~~-----~g~~G~l~~~~~~i~~l~~ 231 (370)
T TIGR02539 195 KEIGADFIVGSGHKSMAA-----SGPCGVLGMSEEWEDIVLR 231 (370)
T ss_pred HHcCCCEEEeeCcccccC-----CCCEEEEEECHHHHhhhcc
Confidence 356789999999999973 2359999999887776643
No 56
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=99.82 E-value=5.4e-18 Score=160.47 Aligned_cols=170 Identities=16% Similarity=0.191 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHhCC-CeeeEeeCchH-HHHHHHHHHHHHHHHh-hcCCCCCEEEEcCCCCcccHHH---HHhCCCEEE
Q psy7357 34 QLIGELETDLCEITGY-DKISFQPNSGA-QGEYAGLRAIQCYHQA-QDAHHRNVCLIPVSAHGTNPAS---AQMAGMSVE 107 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~-~~~~~~~~~Ga-~a~~a~l~a~~~~~~~-~g~~~~d~Vlv~~~~hg~~~~~---~~~~g~~v~ 107 (302)
+.+++.++.+.+.+|. +..++..++|+ ++. ..+++.+... .-...+++|++++.+|+++... ++..|++++
T Consensus 42 ~~l~~a~~~~~~~~~~~~~~~i~~t~g~teal---~~~~~~~~~~~~~~~~~~~vi~~~~e~ps~~~~~~~~~~~G~~v~ 118 (382)
T TIGR03403 42 PAIAEALDKLYKGINARDLDDIIITSCATESN---NWVLKGVYFDEILKGGKNHIITTEVEHPAVRATCAFLESLGVEVT 118 (382)
T ss_pred HHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHH---HHHHHHHHHhhcccCCCCEEEEcCCccHHHHHHHHHHHHCCCEEE
Confidence 4455555566666676 44556555565 444 3333322100 0012357899999999877553 456899999
Q ss_pred EeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCC
Q psy7357 108 PVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGS 186 (302)
Q Consensus 108 ~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~ga 186 (302)
.+|+++++.+|+++++++++ +++++|++++| |++|.+. |+++|.++|+++|+++++|+++..+...+ +..++++
T Consensus 119 ~v~~~~~g~~d~~~l~~~i~---~~t~lv~~~~~~n~tG~~~-~~~~I~~la~~~g~~~ivD~a~~~g~~~~-~~~~~~~ 193 (382)
T TIGR03403 119 YLPINEQGTITAEQVREAIT---EKTALVSVMWANNETGMIF-PIKEIGEICKERGVLFHTDAVQAIGKIPV-DVQKAGV 193 (382)
T ss_pred EEecCCCCCCCHHHHHHhcc---cCCeEEEEEcccCCCcccc-CHHHHHHHHHHcCCEEEEechhhcCCCcc-CccccCC
Confidence 99998889999999999998 78899999987 5899999 79999999999999999999976544332 4557889
Q ss_pred cEEEeCCCcccCCCCCCCCCcceeEEEeCCC
Q psy7357 187 DVSHLNLHKTFCIPHGGGGPGMGPIGVKSHL 217 (302)
Q Consensus 187 Div~~~~hK~l~~p~~~gGp~~G~l~~~~~l 217 (302)
|+++.++||+++ | ||+|++++++++
T Consensus 194 D~~~~s~~K~~g-p-----~G~g~l~vr~~~ 218 (382)
T TIGR03403 194 DFLSFSAHKFHG-P-----KGVGGLYIRKGV 218 (382)
T ss_pred CEEEEcchhhCC-C-----CceEEEEECCCC
Confidence 999999999753 3 578999998654
No 57
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=99.82 E-value=7.8e-19 Score=163.46 Aligned_cols=180 Identities=17% Similarity=0.188 Sum_probs=134.4
Q ss_pred cccHHHHHHHHHHHHHHHhCCC---eeeEeeCchHHHHHHHHHHHHHHHHhh------cCCCCCEEEEcCCCCcccHHHH
Q psy7357 29 ARGYEQLIGELETDLCEITGYD---KISFQPNSGAQGEYAGLRAIQCYHQAQ------DAHHRNVCLIPVSAHGTNPASA 99 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~---~~~~~~~~Ga~a~~a~l~a~~~~~~~~------g~~~~d~Vlv~~~~hg~~~~~~ 99 (302)
+.+..++.+++++++++++|.+ ...+++.+|++|+..++.+++...... +...+++|+++++.|.++...+
T Consensus 33 ~~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~~~~ 112 (345)
T cd06450 33 SPAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAA 112 (345)
T ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhHHHHHH
Confidence 7788999999999999999986 234566677777756665554211000 0112458889999998877777
Q ss_pred HhCCCEEEEeecCCCCCCCHHHHHHHHhc---cCCCeEEEEEecCC-CceeccccHHHHHHHHHHhCCEEEEecCCcccc
Q psy7357 100 QMAGMSVEPVSVRKDGTIDFSDLETKVKK---NKETLSCLMITYPS-TFGVFEENITDVCELIHEHGGQVYLDGANMNAQ 175 (302)
Q Consensus 100 ~~~g~~v~~i~~~~~g~iD~~~l~~~i~~---~~~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~ 175 (302)
...|.+++.+|+++++.+|+++|++++++ +..++++|++++|+ ++|.+. |+++|+++|+++|+++++|+++....
T Consensus 113 ~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~-~~~~i~~~~~~~~~~l~vD~a~~~~~ 191 (345)
T cd06450 113 AYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAID-PLEEIADLAEKYDLWLHVDAAYGGFL 191 (345)
T ss_pred HHHhcCeEEeeeCCCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCC-CHHHHHHHHHHhCCeEEEechhhHHH
Confidence 77799999999988889999999999973 11277888888874 899998 79999999999999999999975443
Q ss_pred cccCCC-----CccCCcEEEeCCCcccCCCCCCCCCcceeEEEe
Q psy7357 176 VGLCRP-----GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVK 214 (302)
Q Consensus 176 ~~~~~p-----~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~ 214 (302)
...... ...++|++++++||+++.| +++|+++++
T Consensus 192 ~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p-----~g~g~~~~~ 230 (345)
T cd06450 192 LPFPEPRHLDFGIERVDSISVDPHKYGLVP-----LGCSAVLVR 230 (345)
T ss_pred hhChhhHHHhcCccccCEEEEchhHhhCCC-----cchHHHHHH
Confidence 222111 1136899999999998754 467887766
No 58
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=99.82 E-value=5e-19 Score=166.59 Aligned_cols=177 Identities=15% Similarity=0.219 Sum_probs=135.5
Q ss_pred cHHHHHHHHHHHHHHHhCCCe--e-eEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCC-CCccc-HHHHHhCCCE
Q psy7357 31 GYEQLIGELETDLCEITGYDK--I-SFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVS-AHGTN-PASAQMAGMS 105 (302)
Q Consensus 31 G~l~~~~e~~~~l~~l~g~~~--~-~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~-~hg~~-~~~~~~~g~~ 105 (302)
.+.+.++++++.+++++|.+. . .+.+++|+.+..+++.++. .++++|++..+ .|+.. ...++..|++
T Consensus 34 ~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~--------~~~~~vlv~~~~~~~~~~~~~~~~~g~~ 105 (368)
T PRK13479 34 DFNALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLV--------PRDGKVLVPDNGAYGARIAQIAEYLGIA 105 (368)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhcc--------CCCCeEEEEeCCchHHHHHHHHHHcCCc
Confidence 356789999999999999863 3 3356677777656655553 46677776654 44433 2456788999
Q ss_pred EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCcc
Q psy7357 106 VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDY 184 (302)
Q Consensus 106 v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~ 184 (302)
++.+|.++++.+|+++++++++++ ++++.|++++| |++|... |+++|.++||++|+++++|+++..+... .+..++
T Consensus 106 ~~~i~~~~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~~~tG~~~-~~~~i~~l~~~~~~~livDa~~~~g~~~-~~~~~~ 182 (368)
T PRK13479 106 HVVLDTGEDEPPDAAEVEAALAAD-PRITHVALVHCETTTGILN-PLDEIAAVAKRHGKRLIVDAMSSFGAIP-IDIAEL 182 (368)
T ss_pred EEEEECCCCCCCCHHHHHHHHHhC-CCCcEEEEEcccCcccccc-CHHHHHHHHHHcCCEEEEEcccccCCcc-cccccc
Confidence 999999877889999999999742 56778889998 4899999 7999999999999999999876444322 234567
Q ss_pred CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 185 GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 185 gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
++|++++++||+|..| ||+|++++++++++.+..
T Consensus 183 ~~d~~v~s~~K~l~g~-----~G~G~l~~~~~~~~~~~~ 216 (368)
T PRK13479 183 GIDALISSANKCIEGV-----PGFGFVIARRSELEACKG 216 (368)
T ss_pred CceEEEecCccccccC-----CCceEEEECHHHHHHhhc
Confidence 8999999999999743 678999999877666544
No 59
>PRK14012 cysteine desulfurase; Provisional
Probab=99.81 E-value=1.1e-18 Score=166.64 Aligned_cols=173 Identities=16% Similarity=0.290 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHHHhCCCeeeE-eeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH---HHhCCCEEEE
Q psy7357 33 EQLIGELETDLCEITGYDKISF-QPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS---AQMAGMSVEP 108 (302)
Q Consensus 33 l~~~~e~~~~l~~l~g~~~~~~-~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~---~~~~g~~v~~ 108 (302)
.+.++++++.+++++|.+...+ ..++|+.+...++.++..+. .+++|+|++++..|+++... .+..|++++.
T Consensus 48 ~~~~~~~r~~ia~~~g~~~~~v~~~~g~t~al~~~l~~l~~~~----~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~ 123 (404)
T PRK14012 48 EEAVDIARNQIADLIGADPREIVFTSGATESDNLAIKGAAHFY----QKKGKHIITSKTEHKAVLDTCRQLEREGFEVTY 123 (404)
T ss_pred HHHHHHHHHHHHHHcCcCcCeEEEeCCHHHHHHHHHHHHHHhh----cCCCCEEEEecCccHHHHHHHHHHHhCCCEEEE
Confidence 3678899999999999976544 44455565544444443211 14689999999998776443 3356999999
Q ss_pred eecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCc
Q psy7357 109 VSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSD 187 (302)
Q Consensus 109 i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaD 187 (302)
++.+++|.+|+++|+++++ +++++|+++++ |++|.+. |+++|.++||++|+++++|+++..+...+ +...+++|
T Consensus 124 v~~~~~g~~d~~~l~~~i~---~~t~lv~~~~~~n~tG~~~-~~~~I~~la~~~g~~vivD~a~~~g~~~~-~~~~~~~D 198 (404)
T PRK14012 124 LDPQSNGIIDLEKLEAAMR---DDTILVSIMHVNNEIGVIQ-DIAAIGEICRERGIIFHVDAAQSVGKVPI-DLSKLKVD 198 (404)
T ss_pred EccCCCCcCCHHHHHHhcC---CCCEEEEEECcCCCccchh-hHHHHHHHHHHcCCEEEEEcchhcCCccc-CcccCCCC
Confidence 9998889999999999998 78899999987 5899999 79999999999999999999985544322 34567899
Q ss_pred EEEeCCCcccCCCCCCCCCcceeEEEeCCCCCC
Q psy7357 188 VSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPF 220 (302)
Q Consensus 188 iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~ 220 (302)
++++++||.++ | +|.|+++++++...+
T Consensus 199 ~~~~s~~K~~g-p-----~g~G~l~~~~~~~~~ 225 (404)
T PRK14012 199 LMSFSAHKIYG-P-----KGIGALYVRRKPRVR 225 (404)
T ss_pred EEEEehhhccC-C-----CceEEEEEecCCCCC
Confidence 99999999553 2 368999988764433
No 60
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=99.81 E-value=1.1e-17 Score=157.28 Aligned_cols=180 Identities=17% Similarity=0.165 Sum_probs=131.8
Q ss_pred cccHHHHHHHHHHHHHHHhCCCeee-EeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEE
Q psy7357 29 ARGYEQLIGELETDLCEITGYDKIS-FQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVE 107 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~~~-~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~ 107 (302)
..+..+..+++++++++++|++..+ +...+|+.+++.++.+++.. ..+++++|++++..|.++...++..|++++
T Consensus 54 ~~~~~~~~~~~~~~la~~~g~~~~~~~~~~ggt~a~~~a~~~~~~~----~~~~~~~vl~~~~~h~s~~~~~~~~g~~~~ 129 (371)
T PRK13520 54 FPGTAKLEEEAVEMLGELLHLPDAYGYITSGGTEANIQAVRAARNL----AKAEKPNIVVPESAHFSFDKAADMLGVELR 129 (371)
T ss_pred CccHHHHHHHHHHHHHHHhCCCCCCeEEecCcHHHHHHHHHHHHhh----ccCCCceEEecCcchHHHHHHHHHcCceEE
Confidence 3578888899999999999987643 44555666654554444321 012568999999998877777788899999
Q ss_pred EeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCccccccc-C-----C
Q psy7357 108 PVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGL-C-----R 180 (302)
Q Consensus 108 ~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~-~-----~ 180 (302)
.+|.++++.+|+++|+++++ +++++|++.++ |++|.+. |+++|+++|+++|+++++|++|....... . .
T Consensus 130 ~v~~~~~~~~d~~~l~~~i~---~~~~~vi~~~~~~~tG~~~-~l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~ 205 (371)
T PRK13520 130 RAPLDDDYRVDVKAVEDLID---DNTIGIVGIAGTTELGQVD-PIPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFD 205 (371)
T ss_pred EecCCCCCcCCHHHHHHHHh---hCCEEEEEEcCCcCCcccC-CHHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCcc
Confidence 99998888999999999998 67777776666 5899999 79999999999999999999875322111 1 1
Q ss_pred CCccCCcEEEeCCCcccCCCCCCCCCcceeEEE-eCCCCCCC
Q psy7357 181 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGV-KSHLAPFL 221 (302)
Q Consensus 181 p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~-~~~l~~~l 221 (302)
....++|.+++++||+... |.++|++++ ++++.+.+
T Consensus 206 ~~~~~vd~~~~s~~K~~~a-----~~~~G~~~~~~~~~~~~l 242 (371)
T PRK13520 206 FSLPGVDSITIDPHKMGLA-----PIPAGGILFRDESYLDAL 242 (371)
T ss_pred ccCCCCceEEECCccccCc-----cCCceEEEEcCHHHHHhh
Confidence 1235789999999997643 234555555 44454443
No 61
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=99.80 E-value=3.2e-18 Score=163.89 Aligned_cols=164 Identities=23% Similarity=0.223 Sum_probs=123.4
Q ss_pred HHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH-----HHHhCCCEEEEeecCC
Q psy7357 39 LETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA-----SAQMAGMSVEPVSVRK 113 (302)
Q Consensus 39 ~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~-----~~~~~g~~v~~i~~~~ 113 (302)
.++.+++++|++...+.+++|+.|+.+++.++. ++||+|+++++.|+++.. .....|++++.+++++
T Consensus 76 ~~~~la~~~g~~~~~i~~~sgt~al~~~l~~l~--------~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 147 (416)
T PRK00011 76 AIDRAKELFGAEYANVQPHSGSQANAAVYFALL--------KPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDE 147 (416)
T ss_pred HHHHHHHHhCCCceeeecCCchHHHHHHHHHhc--------CCCCEEEEeccccCCccccccccccccceeeEeecCcCc
Confidence 456899999998877777788877655554442 689999999999986532 1234567898998874
Q ss_pred -CCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCcccccc---cCCCCccCCcEE
Q psy7357 114 -DGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVG---LCRPGDYGSDVS 189 (302)
Q Consensus 114 -~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~---~~~p~~~gaDiv 189 (302)
++.+|++++++++++ .++++|++++++ +|... |+++|+++|+++|+++++|++|..+... ...+.. ++|++
T Consensus 148 ~~~~~d~~~l~~~i~~--~~~k~v~~~~~~-~~~~~-~~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~-~~di~ 222 (416)
T PRK00011 148 ETGLIDYDEVEKLALE--HKPKLIIAGASA-YSRPI-DFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVP-HADVV 222 (416)
T ss_pred ccCCcCHHHHHHHHHh--cCCCEEEECCCc-CCCcc-CHHHHHHHHHHcCCEEEEECcchhcccccCccCCCCC-CCcEE
Confidence 588999999999973 367788887644 46666 7999999999999999999998544321 122333 68999
Q ss_pred EeCCCcccCCCCCCCCCcceeEEEe-CCCCCCC
Q psy7357 190 HLNLHKTFCIPHGGGGPGMGPIGVK-SHLAPFL 221 (302)
Q Consensus 190 ~~~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~l 221 (302)
++++||+|+ ||++|+++++ +++.+++
T Consensus 223 ~~S~~K~l~------g~~gg~i~~~~~~~~~~l 249 (416)
T PRK00011 223 TTTTHKTLR------GPRGGLILTNDEELAKKI 249 (416)
T ss_pred EecCCcCCC------CCCceEEEeCCHHHHHHH
Confidence 999999874 6888999996 4666554
No 62
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=99.79 E-value=5.3e-18 Score=140.72 Aligned_cols=161 Identities=28% Similarity=0.388 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHh--CCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH-HHHHhCCCEEEEeecC
Q psy7357 36 IGELETDLCEIT--GYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP-ASAQMAGMSVEPVSVR 112 (302)
Q Consensus 36 ~~e~~~~l~~l~--g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~-~~~~~~g~~v~~i~~~ 112 (302)
+.++++++++++ +.+...+.+ +|+.|+..+++++. +++++|+++++.|+++. ..+...|++++.++.+
T Consensus 2 ~~~~~~~l~~~~~~~~~~~~~~~-~~t~a~~~~~~~~~--------~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 72 (170)
T cd01494 2 LEELEEKLARLLQPGNDKAVFVP-SGTGANEAALLALL--------GPGDEVIVDANGHGSRYWVAAELAGAKPVPVPVD 72 (170)
T ss_pred HHHHHHHHHHHcCCCCCcEEEeC-CcHHHHHHHHHHhC--------CCCCEEEEeecccceehhhHHHhcCCEEEEeccC
Confidence 468999999999 655555544 66666656666553 46789999999988777 6778889999999987
Q ss_pred CCCCCCH--HHHHHHHhccCCCeEEEEEecCC-CceeccccHHHHHHHHHHhCCEEEEecCCccccccc--CCCCccCCc
Q psy7357 113 KDGTIDF--SDLETKVKKNKETLSCLMITYPS-TFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGL--CRPGDYGSD 187 (302)
Q Consensus 113 ~~g~iD~--~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~--~~p~~~gaD 187 (302)
.++..+. +++++... .++++++++++|+ ++|... |+++|+++|+++|+++++|+++....... ..+...++|
T Consensus 73 ~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~g~~~-~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~d 149 (170)
T cd01494 73 DAGYGGLDVAILEELKA--KPNVALIVITPNTTSGGVLV-PLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGAD 149 (170)
T ss_pred CCCccchhhhhhhhccc--cCceEEEEEecCcCCCCeEc-CHHHHHHHHHHcCCEEEEecccccccccccccccccccCC
Confidence 6554433 35554433 2688999999885 778877 79999999999999999999875333221 124456799
Q ss_pred EEEeCCCcccCCCCCCCCCcceeEEEe
Q psy7357 188 VSHLNLHKTFCIPHGGGGPGMGPIGVK 214 (302)
Q Consensus 188 iv~~~~hK~l~~p~~~gGp~~G~l~~~ 214 (302)
+++.++||+|+ +|++|++.+|
T Consensus 150 ~~~~s~~K~~~------~~~~G~l~~~ 170 (170)
T cd01494 150 VVTFSLHKNLG------GEGGGVVIVK 170 (170)
T ss_pred EEEEEcccccC------CCceEEEEeC
Confidence 99999999986 5899999875
No 63
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=99.79 E-value=3.5e-17 Score=154.01 Aligned_cols=183 Identities=17% Similarity=0.213 Sum_probs=128.7
Q ss_pred cccHHHHHHHHHHHHHHHhCCCeee-EeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEE
Q psy7357 29 ARGYEQLIGELETDLCEITGYDKIS-FQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVE 107 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~~~-~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~ 107 (302)
+.|..+..+++++.+++++|++..+ +...+|+.++..++.+++... .. ..++++|+++++.|.++...++..|++++
T Consensus 54 ~~~~~~~~~~~~~~la~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~-~~~g~~vl~~~~~h~~~~~~~~~~G~~~~ 131 (373)
T TIGR03812 54 FPGTKKIEEEVVGSLGNLLHLPDAYGYIVSGGTEANIQAVRAAKNLA-RE-EKRTPNIIVPESAHFSFEKAAEMLGLELR 131 (373)
T ss_pred CccHHHHHHHHHHHHHHHhCCCCCCeEEeccHHHHHHHHHHHHHHHH-hc-cCCCcEEEECCcchHHHHHHHHHcCCeEE
Confidence 3567788899999999999997654 344445554434433333211 01 13568999999998877777888999999
Q ss_pred EeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCccccccc--------
Q psy7357 108 PVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGL-------- 178 (302)
Q Consensus 108 ~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~-------- 178 (302)
.+|.++++.+|+++++++++ +++.++++..| |++|.+. |+++|.++||++|+++++|+++......+
T Consensus 132 ~v~~~~~~~~d~~~l~~~l~---~~~~~vv~~~~~~~tG~~~-~~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~ 207 (373)
T TIGR03812 132 YAPLDEDYTVDVKDVEDLID---DNTIGIVGIAGTTELGQID-DIEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPP 207 (373)
T ss_pred EEeeCCCCCcCHHHHHHHHh---hCcEEEEEECCCCCCCccC-CHHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCC
Confidence 99998888999999999998 55544444434 6899998 79999999999999999999985322111
Q ss_pred -CCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 179 -CRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 179 -~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
......++|.+++++||++..| .|..|+++.++++.+.+
T Consensus 208 ~~d~~~~~~d~~~~s~~K~~~~~----~~~G~~~~~~~~~~~~l 247 (373)
T TIGR03812 208 PFDFSLPGVQSITIDPHKMGLSP----IPAGGILFRSKSYLKYL 247 (373)
T ss_pred CccccCCCCCEEEECccccCCCc----CCceEEEEeCHHHHhhh
Confidence 0111247899999999965433 12234555566666554
No 64
>KOG2862|consensus
Probab=99.79 E-value=6.2e-18 Score=150.57 Aligned_cols=181 Identities=18% Similarity=0.252 Sum_probs=143.5
Q ss_pred cccHHHHHHHHHHHHHHHhCCCe--eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCC-CCcccH-HHHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYDK--ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVS-AHGTNP-ASAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~--~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~-~hg~~~-~~~~~~g~ 104 (302)
|.-+.|+++++.+-++..|.... ..+..++|..|.++++..+. .+||+|++-.. .+|... ..++++|+
T Consensus 45 sPe~~qIm~~v~egikyVFkT~n~~tf~isgsGh~g~E~al~N~l--------ePgd~vLv~~~G~wg~ra~D~~~r~ga 116 (385)
T KOG2862|consen 45 SPEFVQIMDEVLEGIKYVFKTANAQTFVISGSGHSGWEAALVNLL--------EPGDNVLVVSTGTWGQRAADCARRYGA 116 (385)
T ss_pred CHHHHHHHHHHHHHHHHHhccCCCceEEEecCCcchHHHHHHhhc--------CCCCeEEEEEechHHHHHHHHHHhhCc
Confidence 34577899999999999998765 35667888888777776655 68888777654 444333 36779999
Q ss_pred EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCccccccc-CCCC
Q psy7357 105 SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGL-CRPG 182 (302)
Q Consensus 105 ~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~-~~p~ 182 (302)
+|..++.+..+...++++++.+.+|++ ++|++++. +.||++++.++.+.++||+|+++++||++. ++++. ...+
T Consensus 117 ~V~~v~~~~G~~~~le~i~~~lsqh~p--~~vfv~hgdsSTgV~q~~~~~~g~lc~k~~~lllVD~Va--Slggt~F~mD 192 (385)
T KOG2862|consen 117 EVDVVEADIGQAVPLEEITEKLSQHKP--KAVFVTHGDSSTGVLQDLLAISGELCHKHEALLLVDTVA--SLGGTEFEMD 192 (385)
T ss_pred eeeEEecCcccCccHHHHHHHHHhcCC--ceEEEEecCccccccchHHHHHHHHhhcCCeEEEEechh--hcCCccceeh
Confidence 999999988888999999999998655 56888775 589999933888899999999999999874 45443 3568
Q ss_pred ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCcc
Q psy7357 183 DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPL 226 (302)
Q Consensus 183 ~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~~ 226 (302)
+||+|++...++|.|+.| ||+++++.+++..+++..|-.
T Consensus 193 ewgVDvaytgSQKaL~aP-----~GLsiisfS~ka~~~~~~rK~ 231 (385)
T KOG2862|consen 193 EWGVDVAYTGSQKALGAP-----AGLSIISFSDKALEAIRDRKT 231 (385)
T ss_pred hhcccEEEecchhhcCCC-----CCcceeecCHHHHHHHhhccC
Confidence 999999999999999876 689999999887777765554
No 65
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=99.79 E-value=3.6e-18 Score=159.19 Aligned_cols=176 Identities=13% Similarity=0.187 Sum_probs=133.0
Q ss_pred cHHHHHHHHHHHHHHHhCCCee--eE-eeCchHHHHHHHHHHHHHHHHhhcCCCCCE-EEEcCCCCcc-cHHHHHhCCCE
Q psy7357 31 GYEQLIGELETDLCEITGYDKI--SF-QPNSGAQGEYAGLRAIQCYHQAQDAHHRNV-CLIPVSAHGT-NPASAQMAGMS 105 (302)
Q Consensus 31 G~l~~~~e~~~~l~~l~g~~~~--~~-~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~-Vlv~~~~hg~-~~~~~~~~g~~ 105 (302)
.+.+.++++++++++++|++.. .+ ...+|+.+..+++.++. +++++ |++.++.|+. ....++..|.+
T Consensus 28 ~~~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~--------~~~~~vi~~~~~~~~~~~~~~a~~~g~~ 99 (355)
T TIGR03301 28 EFNDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLV--------PRDGKLLVLINGAYGERLAKICEYLGIP 99 (355)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhcc--------CCCCeEEEECCCchhhHHHHHHHHcCCc
Confidence 4568899999999999999752 23 45677776655555443 34555 5555566665 23466788999
Q ss_pred EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCcc
Q psy7357 106 VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDY 184 (302)
Q Consensus 106 v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~ 184 (302)
++.++.++++.+|++++++.++++ ++++.|+++++ |++|.+. |+++|+++|+++|+++++|+++..+... .+...+
T Consensus 100 ~~~i~~~~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~~~~G~~~-~~~~i~~l~~~~~~~livD~~~s~g~~~-~~~~~~ 176 (355)
T TIGR03301 100 HTDLNFSEYEPPDLNRIEEALAAD-PDITHVATVHHETTTGILN-PLEAIAKVARSHGAVLIVDAMSSFGAIP-IDIEEL 176 (355)
T ss_pred eEEEecCCCCCCCHHHHHHHHHhC-CCceEEEEEecCCcccchh-HHHHHHHHHHHcCCEEEEEeccccCCcc-cchhhc
Confidence 999998777889999999999753 56677777776 5789999 7999999999999999999876433222 234567
Q ss_pred CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 185 GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 185 gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
++|+++.++||+|+. +||+|++++++++++.+.
T Consensus 177 ~~d~~~~s~~K~l~~-----~~G~g~~~~~~~~~~~~~ 209 (355)
T TIGR03301 177 DVDALIASANKCLEG-----VPGFGFVIARRDLLEASA 209 (355)
T ss_pred CccEEEecCCccccc-----CCceeEEEECHHHHHHhh
Confidence 899999999999863 468999999987766554
No 66
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=99.78 E-value=2.9e-17 Score=155.68 Aligned_cols=167 Identities=16% Similarity=0.146 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCC
Q psy7357 35 LIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKD 114 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~ 114 (302)
...++++.+++++|.+.+ +.+.+|+.|...++.++. .++||+|+++++.|..+...+...|++++.++++++
T Consensus 34 ~~~~le~~la~~~g~~~~-v~~~sgt~al~lal~al~-------~~~Gd~Viv~~~~~~~~~~~~~~~G~~~v~vd~~~~ 105 (379)
T PRK11658 34 KNQALEQAFCQLTGNQHA-IAVSSATAGMHITLMALG-------IGPGDEVITPSLTWVSTLNMIVLLGATPVMVDVDRD 105 (379)
T ss_pred hHHHHHHHHHHHhCCCeE-EEECCHHHHHHHHHHHcC-------CCCCCEEEECCCcHHHHHHHHHHcCCEEEEEecCCC
Confidence 478999999999999864 456677776645544431 157999999999988887777889999999999865
Q ss_pred -CCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCccccccc-CCCCccCCcEEEeC
Q psy7357 115 -GTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGL-CRPGDYGSDVSHLN 192 (302)
Q Consensus 115 -g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~-~~p~~~gaDiv~~~ 192 (302)
+.+|+++++++++ ++|++|+..+| +|... |+++|+++|+++|+++++|+++..+.... ...+.+|.|+..++
T Consensus 106 ~~~~d~~~l~~~i~---~~tkav~~~~~--~G~~~-d~~~i~~~a~~~gi~vi~D~a~a~g~~~~~~~~g~~g~~~~Sf~ 179 (379)
T PRK11658 106 TLMVTPEAIEAAIT---PRTKAIIPVHY--AGAPA-DLDAIRAIGERYGIPVIEDAAHAVGTYYKGRHIGARGTAIFSFH 179 (379)
T ss_pred cCCcCHHHHHHhcc---cCCeEEEEeCC--CCCcC-CHHHHHHHHHHcCCeEEEECCCccCCeECCeecCCCCCEEEeCC
Confidence 4689999999998 78999887664 68888 89999999999999999999986443221 23567787777777
Q ss_pred CCcccCCCCCCCCCcceeEEEe-CCCCCCC
Q psy7357 193 LHKTFCIPHGGGGPGMGPIGVK-SHLAPFL 221 (302)
Q Consensus 193 ~hK~l~~p~~~gGp~~G~l~~~-~~l~~~l 221 (302)
.+|.+. ++.+|+++++ +++.+++
T Consensus 180 ~~K~l~------~g~GG~v~~~~~~~~~~~ 203 (379)
T PRK11658 180 AIKNIT------CAEGGLVVTDDDELADRL 203 (379)
T ss_pred CCCcCc------ccCceEEEECCHHHHHHH
Confidence 778765 3467888775 4554433
No 67
>PRK06234 methionine gamma-lyase; Provisional
Probab=99.78 E-value=5e-18 Score=161.96 Aligned_cols=163 Identities=17% Similarity=0.192 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEEEEee
Q psy7357 35 LIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSVEPVS 110 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~i~ 110 (302)
-..++++.+++++|.+. .+..++|+.|..+++.++. ++||+|+++++.|+.+.. .++..|++++.++
T Consensus 65 ~~~~Le~~iA~~~g~~~-~l~~~sG~~Ai~~al~~ll--------~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd 135 (400)
T PRK06234 65 TSTEVENKLALLEGGEA-AVVAASGMGAISSSLWSAL--------KAGDHVVASDTLYGCTFALLNHGLTRYGVEVTFVD 135 (400)
T ss_pred cHHHHHHHHHHHhCCCc-EEEEcCHHHHHHHHHHHHh--------CCCCEEEEecCccchHHHHHHHHHhhCCeEEEEEC
Confidence 35689999999999875 4567778876655555443 689999999998876543 3467899999988
Q ss_pred cCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHh--CCEEEEecCCcccccccCCCCccCCc
Q psy7357 111 VRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEH--GGQVYLDGANMNAQVGLCRPGDYGSD 187 (302)
Q Consensus 111 ~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~--g~llivD~a~~~~~~~~~~p~~~gaD 187 (302)
.+ |+++++++++ ++|++|++++| |++|.+. |+++|.++|+++ |+++++|+++.... ...|..+++|
T Consensus 136 ~~-----d~e~l~~~i~---~~tklI~iesP~NPtG~v~-dl~~I~~la~~~~~~i~livDea~~~~~--~~~~l~~g~D 204 (400)
T PRK06234 136 TS-----NLEEVRNALK---ANTKVVYLETPANPTLKVT-DIKAISNIAHENNKECLVFVDNTFCTPY--IQRPLQLGAD 204 (400)
T ss_pred CC-----CHHHHHHHhc---cCCeEEEEECCCCCCCCcC-CHHHHHHHHHhcCCCCEEEEECCCCchh--cCCchhhCCc
Confidence 63 8999999998 78999999999 5899998 899999999997 99999999864332 2355667899
Q ss_pred EEEeCCCcccCCCCCCCCC-cceeEEEeCCCCCCC
Q psy7357 188 VSHLNLHKTFCIPHGGGGP-GMGPIGVKSHLAPFL 221 (302)
Q Consensus 188 iv~~~~hK~l~~p~~~gGp-~~G~l~~~~~l~~~l 221 (302)
+++.|.+|+++++ |. .+|++++++++++++
T Consensus 205 ivv~S~sK~l~g~----g~~~gG~v~~~~~~~~~l 235 (400)
T PRK06234 205 VVVHSATKYLNGH----GDVIAGFVVGKEEFINQV 235 (400)
T ss_pred EEEeeccccccCC----CCceeEEEEecHHHHHHH
Confidence 9999999999743 33 369999998776665
No 68
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=99.78 E-value=7.8e-18 Score=160.53 Aligned_cols=160 Identities=14% Similarity=0.217 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH----HHhCCCEEEEee
Q psy7357 35 LIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS----AQMAGMSVEPVS 110 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~----~~~~g~~v~~i~ 110 (302)
...++++++++++|.+.+.+ ..+|+.++.+++.++. ++||+|+++++.|+.+... +...|++++.++
T Consensus 66 ~~~~Le~~lA~l~G~~~~~~-~~sG~~Ai~~~l~~~l--------~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd 136 (398)
T PRK07504 66 TVDMFEKRMCALEGAEDARA-TASGMAAVTAAILCQV--------KAGDHVVAARALFGSCRYVVETLLPRYGIESTLVD 136 (398)
T ss_pred hHHHHHHHHHHHhCCCeeeE-ecCHHHHHHHHHHHHh--------CCCCEEEEcCCchhHHHHHHHHHHhhcCeEEEEEC
Confidence 46889999999999988765 5678776644444332 6899999999988866432 346788888886
Q ss_pred cCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcEE
Q psy7357 111 VRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDVS 189 (302)
Q Consensus 111 ~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDiv 189 (302)
.+|+++++++++ ++|++|++++| |++|.+. |+++|.++|+++|+++++|+++.... ...|.++|+|++
T Consensus 137 -----~~d~e~l~~ai~---~~tklV~lesp~NptG~v~-dl~~I~~la~~~gi~lvvD~a~a~~~--~~~~~~~gaDiv 205 (398)
T PRK07504 137 -----GLDLDNWEKAVR---PNTKVFFLESPTNPTLEVI-DIAAVAKIANQAGAKLVVDNVFATPL--FQKPLELGAHIV 205 (398)
T ss_pred -----CCCHHHHHHhcC---cCceEEEEECCCCCCcEec-CHHHHHHHHHHcCCEEEEECCccccc--cCCchhhCCCEE
Confidence 279999999998 88999999999 5899998 89999999999999999999874333 245677899999
Q ss_pred EeCCCcccCCCCCCCCCcc-eeEEEeCCCC
Q psy7357 190 HLNLHKTFCIPHGGGGPGM-GPIGVKSHLA 218 (302)
Q Consensus 190 ~~~~hK~l~~p~~~gGp~~-G~l~~~~~l~ 218 (302)
+.|+||+|+.+ |+++ |+++++++++
T Consensus 206 v~S~sK~l~g~----g~~~GG~vv~~~~~i 231 (398)
T PRK07504 206 VYSATKHIDGQ----GRCLGGVVLSDKAWI 231 (398)
T ss_pred EeeccccccCC----ccceEEEEEeCcHHH
Confidence 99999999854 5555 5777776554
No 69
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=99.77 E-value=6.1e-17 Score=150.98 Aligned_cols=244 Identities=15% Similarity=0.129 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCC
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRK 113 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~ 113 (302)
....++++.+++++|.+.+ +...+|+.|...++.++. ..++|+|+++.+.|.++...+...|++++.+++++
T Consensus 18 ~~~~~~~~~la~~~~~~~~-~~~~sgt~al~~~l~~l~-------~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~ 89 (352)
T cd00616 18 PKVREFEKAFAEYLGVKYA-VAVSSGTAALHLALRALG-------IGPGDEVIVPSFTFVATANAILLLGATPVFVDIDP 89 (352)
T ss_pred HHHHHHHHHHHHHhCCCeE-EEECCHHHHHHHHHHHcC-------CCCCCEEEeCCcchHHHHHHHHHcCCeEEEEecCC
Confidence 4678999999999998754 445678776655555442 15789999999998877777788999999999987
Q ss_pred -CCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCcccccccC-CCCccCCcEEEe
Q psy7357 114 -DGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLC-RPGDYGSDVSHL 191 (302)
Q Consensus 114 -~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~-~p~~~gaDiv~~ 191 (302)
++.+|++++++.++ +++++|++++ ++|... |+++|.++|+++|+++++|++|..+..... ..+.+ .|+.++
T Consensus 90 ~~~~~d~~~l~~~i~---~~~~~v~~~~--~~G~~~-~~~~i~~l~~~~~i~li~D~a~~~g~~~~~~~~~~~-~d~~~~ 162 (352)
T cd00616 90 DTYNIDPELIEAAIT---PRTKAIIPVH--LYGNPA-DMDAIMAIAKRHGLPVIEDAAQALGATYKGRKVGTF-GDAGAF 162 (352)
T ss_pred CcCCcCHHHHHHhcC---cCCeEEEEEC--CCCCcC-CHHHHHHHHHHcCCeEEEECCCCCCCeECCEEcccC-cceeEE
Confidence 68899999999997 7899999886 468888 799999999999999999999865432211 12333 488888
Q ss_pred CCC--cccCCCCCCCCCcceeEEEeC-CCCCCCC-----CCccc-------C--CCCcchhhhHHHHhhHh--h----HH
Q psy7357 192 NLH--KTFCIPHGGGGPGMGPIGVKS-HLAPFLP-----VHPLS-------S--IDSSIGAVSAAHYGSAS--I----LP 248 (302)
Q Consensus 192 ~~h--K~l~~p~~~gGp~~G~l~~~~-~l~~~lp-----g~~~~-------~--~~~~l~~~~a~~~~~~~--~----~~ 248 (302)
++| |+|+ ++.+|++++++ ++.+++. +.... . .+..+..+.+++..... + ..
T Consensus 163 S~~~~K~~~------~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~l~~~~~~~~~ 236 (352)
T cd00616 163 SFHPTKNLT------TGEGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAIGLAQLEKLDEIIAR 236 (352)
T ss_pred cCCCCCCCc------ccCceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHHHHHHHHHhhHHHHHH
Confidence 755 8773 34567787763 5544332 11100 0 12223333332222211 0 11
Q ss_pred --HHHHHHH-HHh--cccccccccCCCcceeEEEEEEeccccccCCCCHHHHHHHhhc
Q psy7357 249 --ISWAYIR-RLE--SHYKTLFRSSRSGLVAHEFVIDVRDFKKSANIEAVDIAKRLMD 301 (302)
Q Consensus 249 --~~~~y~~-~l~--~g~~~~~~~~~~~~~~he~~~~~~~~~~~~g~~~~~~~~~l~~ 301 (302)
....|+. .|. +|+++....+......+-+.+.+++. .|.+..++.+.|.+
T Consensus 237 ~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~L~~ 291 (352)
T cd00616 237 RREIAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDPE---AGESRDELIEALKE 291 (352)
T ss_pred HHHHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEECCc---CCCCHHHHHHHHHH
Confidence 1113333 565 47877543321013467777777631 24788899988864
No 70
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=99.77 E-value=4.2e-17 Score=157.99 Aligned_cols=245 Identities=16% Similarity=0.141 Sum_probs=158.4
Q ss_pred HHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCC--
Q psy7357 36 IGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRK-- 113 (302)
Q Consensus 36 ~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~-- 113 (302)
+.++++.+++++|.+.+ +.+.+|+.|+..+++++. ++|| |+++++.|.++.......|.+++.+|+++
T Consensus 80 ~~~Lreaia~~~~~~~v-v~t~ggt~A~~~~~~all--------~pGD-Vii~~p~~~~~~~~i~~~G~~~v~v~~~~~~ 149 (460)
T PRK13238 80 YYRLEDAVKDIFGYPYT-IPTHQGRAAEQILFPVLI--------KKGD-VVPSNYHFDTTRAHIELNGATAVDLVIDEAL 149 (460)
T ss_pred HHHHHHHHHHHhCCCcE-EECCCHHHHHHHHHHHhC--------CCCC-EEccCCcccchHHHHHHcCCEEEEEeccccc
Confidence 46677788999998765 455667777755555543 6899 89999977778777889999999999853
Q ss_pred --------CCCCCHHHHHHHHhccC-CCeEEEEEecC-CCce-ec--cccHHHHHHHHHHhCCEEEEecCCccc--cc--
Q psy7357 114 --------DGTIDFSDLETKVKKNK-ETLSCLMITYP-STFG-VF--EENITDVCELIHEHGGQVYLDGANMNA--QV-- 176 (302)
Q Consensus 114 --------~g~iD~~~l~~~i~~~~-~~t~~V~i~~P-n~~G-~~--~~di~~I~~ia~~~g~llivD~a~~~~--~~-- 176 (302)
.|.+|+++|++.+++++ ++|++|++++| |++| .. ..++++|+++|+++|+++|.|+++... ..
T Consensus 150 ~~~~~~~f~g~id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~ 229 (460)
T PRK13238 150 DTGSRHPFKGNFDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIK 229 (460)
T ss_pred cccccccccCCcCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhh
Confidence 25599999999998543 47999999998 5776 43 126899999999999999999987431 11
Q ss_pred ----cc--CCCCc------cCCcEEEeCCCcccCCCCCCCCCcceeEEEe-CCCCCCCCCCccc-CCC---Ccch-hhhH
Q psy7357 177 ----GL--CRPGD------YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVK-SHLAPFLPVHPLS-SID---SSIG-AVSA 238 (302)
Q Consensus 177 ----~~--~~p~~------~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~lpg~~~~-~~~---~~l~-~~~a 238 (302)
+. .+..+ -..|+++++++|.+. ||.+|+++++ +++.+++....+. ++. .++. +..+
T Consensus 230 ~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~------~~~GG~i~~~d~~l~~~~~~~~~~~~g~~t~~g~~~~~~~ 303 (460)
T PRK13238 230 QREPGYKDKSIKEIAREMFSYADGLTMSAKKDAM------VNIGGLLCFRDEDLFTECRTLCILYEGFPTYGGLAGRDME 303 (460)
T ss_pred hccccccCCCHHHHhhhhcccCcEEEEecccCCC------CcceeEEEcChHHHHHHhhhcccccCCcccccCcHHHHHH
Confidence 01 11111 136999999999776 4556899988 4777776544321 111 1110 1011
Q ss_pred HHHhhHh-hHHHH--------HHHHH-HHh-cccccccccCCCcceeEEEEEEeccccc---cCCCCHHHHHHHhhc
Q psy7357 239 AHYGSAS-ILPIS--------WAYIR-RLE-SHYKTLFRSSRSGLVAHEFVIDVRDFKK---SANIEAVDIAKRLMD 301 (302)
Q Consensus 239 ~~~~~~~-~~~~~--------~~y~~-~l~-~g~~~~~~~~~~~~~~he~~~~~~~~~~---~~g~~~~~~~~~l~~ 301 (302)
+...++. ..... ..|+. .|. .|++++.+ .. .|-+.+|++.+.- ..+.+..+++..|+.
T Consensus 304 Ala~~l~e~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~p-~G----g~~v~~d~~~~~~~~~~~~~~~~~~a~~L~~ 375 (460)
T PRK13238 304 ALAVGLYEGMDEDYLAYRIGQVEYLGEGLEEAGVPIQTP-AG----GHAVFVDAGKFLPHIPAEQFPAQALACELYL 375 (460)
T ss_pred HHHhhHHHhhChHHHHHHHHHHHHHHHHHHHCCCCeEcc-CC----ceEEEEEchhcCCCCCCCCCchHHHHHHHHH
Confidence 1111111 11111 12333 565 58988643 33 5889999986521 113456778877763
No 71
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=99.77 E-value=3.4e-17 Score=157.06 Aligned_cols=246 Identities=20% Similarity=0.256 Sum_probs=157.3
Q ss_pred ccccHHHHHHHHHH----HHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH-HHH--
Q psy7357 28 QARGYEQLIGELET----DLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA-SAQ-- 100 (302)
Q Consensus 28 ~sqG~l~~~~e~~~----~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~-~~~-- 100 (302)
..-| .+...++++ .+++++|.+.+.+.++||+.|+.+++.++. +++|+|++++..|+++.. -++
T Consensus 65 ~~~G-~~~~~~lE~~~~~~la~l~g~~~alv~~~SG~~A~~~~l~al~--------~~GD~Vl~~~~~~~~~~~~g~~~~ 135 (416)
T PRK13034 65 YYGG-CEFVDEVEALAIERAKQLFGCDYANVQPHSGSQANGAVYLALL--------KPGDTILGMSLSHGGHLTHGAKVS 135 (416)
T ss_pred ccCC-ChHHHHHHHHHHHHHHHHhCCCceEEecCCcHHHHHHHHHHhc--------CCCCEEEEcCccceeeeecCCcce
Confidence 3345 477888888 999999999887778899988877777764 789999999998876421 111
Q ss_pred hCCC--EEEEeecCC-CCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCcccccc
Q psy7357 101 MAGM--SVEPVSVRK-DGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVG 177 (302)
Q Consensus 101 ~~g~--~v~~i~~~~-~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~ 177 (302)
..+. +...++.+. ++.+|++++++.++. .++++|+++++. +|... |+++|.++|+++|+++++|++|..+...
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~--~~~klVi~~~~~-~g~~~-dl~~l~~la~~~g~~livD~Aha~G~~~ 211 (416)
T PRK13034 136 LSGKWYNAVQYGVDRLTGLIDYDEVEELAKE--HKPKLIIAGFSA-YPREL-DFARFREIADEVGALLMVDMAHIAGLVA 211 (416)
T ss_pred eccceeeeEEcccccccCCcCHHHHHHHHhh--cCCeEEEECCCc-ccccc-CHHHHHHHHHHcCCEEEEeCcccccCcc
Confidence 1122 223455443 467999999999864 356788776644 57777 8999999999999999999998654432
Q ss_pred c-CCCCc-cCCcEEEeCCCcccCCCCCCCCCcceeEEEeC-CCCCCCCCCccc--CCCCcchhhhHHHHhhHh-hHHHH-
Q psy7357 178 L-CRPGD-YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKS-HLAPFLPVHPLS--SIDSSIGAVSAAHYGSAS-ILPIS- 250 (302)
Q Consensus 178 ~-~~p~~-~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~-~l~~~lpg~~~~--~~~~~l~~~~a~~~~~~~-~~~~~- 250 (302)
. ..++. .++|++++++||+|+ ||.+|++++++ ++.+++...++. +++.....++| ...++. +....
T Consensus 212 ~g~~~~~~~~~Di~~~s~~K~l~------g~~GG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa-~~~al~~~~~~~~ 284 (416)
T PRK13034 212 AGEHPNPFPHAHVVTTTTHKTLR------GPRGGMILTNDEEIAKKINSAVFPGLQGGPLMHVIAA-KAVAFGEALQPEF 284 (416)
T ss_pred cCCCCCCCCCceEEEEeCcccCC------CCCCeEEEECcHHHHHHHHhhcCCcccCCccHHHHHH-HHHHHHHHhChhH
Confidence 2 11111 258999999999996 45568887765 333333222221 11111112222 222221 11110
Q ss_pred -------H---HHHH-HHh-cccccccccCCCcceeEEEEEEeccccccCCCCHHHHHHHhhc
Q psy7357 251 -------W---AYIR-RLE-SHYKTLFRSSRSGLVAHEFVIDVRDFKKSANIEAVDIAKRLMD 301 (302)
Q Consensus 251 -------~---~y~~-~l~-~g~~~~~~~~~~~~~~he~~~~~~~~~~~~g~~~~~~~~~l~~ 301 (302)
+ .|++ +|. .|+++..+++. .|.+.|++.. .+.+..++.++|.+
T Consensus 285 ~~~~~~l~~~a~~l~~~L~~~G~~~~~~~~~----t~i~~v~~~~----~~~~~~~~~~~L~~ 339 (416)
T PRK13034 285 KTYAKQVIANAQALAEVLKERGYDLVSGGTD----NHLLLVDLRP----KGLSGKDAEQALER 339 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEeccCCCC----CcEEEEEcCC----CCCCHHHHHHHHHh
Confidence 1 2333 555 58887632233 8999998863 24677777777754
No 72
>PRK05968 hypothetical protein; Provisional
Probab=99.77 E-value=1.5e-17 Score=158.11 Aligned_cols=166 Identities=13% Similarity=0.116 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH----HHHHhCCCEEEE
Q psy7357 33 EQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP----ASAQMAGMSVEP 108 (302)
Q Consensus 33 l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~----~~~~~~g~~v~~ 108 (302)
.....++++.+++++|.+.+. ...+|+.|+.+++.++. ++||+|+++++.|+.+. ..+...|++++.
T Consensus 62 ~p~~~~le~~lA~l~g~~~av-~~~sG~~Ai~~al~al~--------~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~ 132 (389)
T PRK05968 62 NPTVRAFEEMLAKLEGAEDAR-GFASGMAAISSTVLSFV--------EPGDRIVAVRHVYPDAFRLFETILKRMGVEVDY 132 (389)
T ss_pred ChhHHHHHHHHHHHhCCCcEE-EECCHHHHHHHHHHHHh--------CCCCEEEEeCCCchHHHHHHHHHHHHcCceEEE
Confidence 355889999999999998764 45778776645554433 68999999998887643 245578999999
Q ss_pred eecCCCCCCCHHHHHHHHhccCCCeEEEEEecCC-CceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCc
Q psy7357 109 VSVRKDGTIDFSDLETKVKKNKETLSCLMITYPS-TFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSD 187 (302)
Q Consensus 109 i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaD 187 (302)
++.+ |++++++++. +|++|++++|+ +++.+. |+++|+++||++|+++++|+++.... ...|..+|+|
T Consensus 133 vd~~-----d~~~l~~~i~----~tklV~ie~pt~~~~~~~-dl~~i~~la~~~gi~vivD~a~a~~~--~~~p~~~g~D 200 (389)
T PRK05968 133 VDGR-----DEEAVAKALP----GAKLLYLESPTSWVFELQ-DVAALAALAKRHGVVTMIDNSWASPV--FQRPITLGVD 200 (389)
T ss_pred eCCC-----CHHHHHHhcc----cCCEEEEECCCCCCCcHH-HHHHHHHHHHHcCCEEEEECCCcchh--ccCchhcCCc
Confidence 8753 8999998873 57889999984 677777 89999999999999999999864322 2346678999
Q ss_pred EEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 188 VSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 188 iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+++.|++|+|+.| |++++|+++.++++++++.
T Consensus 201 ivv~S~tK~l~g~---~~~~gG~i~~~~~~~~~l~ 232 (389)
T PRK05968 201 LVIHSASKYLGGH---SDTVAGVVAGSKEHIARIN 232 (389)
T ss_pred EEEeeccccccCC---CCeEEEEEEECHHHHHHHH
Confidence 9999999999854 3456799998877665543
No 73
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=99.77 E-value=8.4e-18 Score=159.98 Aligned_cols=166 Identities=19% Similarity=0.202 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~i 109 (302)
....++++.+++++|.+.+ +...+|+.|+..++.++. +++|+|+++++.|+.+.. .+...|++++.+
T Consensus 59 p~~~~le~~lA~l~g~~~a-v~~~sG~~Ai~~~l~al~--------~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~~~~v 129 (391)
T TIGR01328 59 PTVSNLEGRIAFLEGTEAA-VATSSGMGAIAATLLTIL--------KAGDHLISDECLYGCTFALLEHALTKFGIQVDFI 129 (391)
T ss_pred chHHHHHHHHHHHhCCCcE-EEECCHHHHHHHHHHHHh--------CCCCEEEEecCcchHHHHHHHHHHhcCCeEEEEE
Confidence 3578899999999999874 566778776655554443 689999999998875433 345679999988
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
+.+ |+++++++++ ++|++|++++| |++|.+. |+++|+++||++|+++++|+++.... ...|...++|+
T Consensus 130 d~~-----d~e~l~~~i~---~~tklV~le~p~Np~G~v~-dl~~I~~la~~~gi~livD~a~a~~~--~~~~~~~g~Di 198 (391)
T TIGR01328 130 NMA-----IPEEVKAHIK---DNTKIVYFETPANPTMKLI-DMERVCRDAHSQGVKVIVDNTFATPM--LTNPVALGVDV 198 (391)
T ss_pred CCC-----CHHHHHHhhc---cCCeEEEEECCCCCCCccc-CHHHHHHHHHHcCCEEEEECCCchhc--cCCchhcCCCE
Confidence 864 8999999998 78999999999 5899998 89999999999999999999874332 23566789999
Q ss_pred EEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 189 SHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
++.+.+|+|+.+ |++.+|+++.++++++++.
T Consensus 199 vv~S~sK~lgg~---g~~~gG~v~~~~~li~~l~ 229 (391)
T TIGR01328 199 VVHSATKYIGGH---GDVVAGLICGKAELLQQIR 229 (391)
T ss_pred EEccccccccCC---CCceEEEEEcCHHHHHHHH
Confidence 999999998743 2344789888887766553
No 74
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=99.77 E-value=1.7e-16 Score=153.02 Aligned_cols=181 Identities=19% Similarity=0.202 Sum_probs=141.3
Q ss_pred cccccHHHHHHHHHHHHHHHhCCCe--eeEeeCchHHHHHHHHHHHHHHHHh-hcC-----CCCCEEEEcCCCCcccHHH
Q psy7357 27 DQARGYEQLIGELETDLCEITGYDK--ISFQPNSGAQGEYAGLRAIQCYHQA-QDA-----HHRNVCLIPVSAHGTNPAS 98 (302)
Q Consensus 27 e~sqG~l~~~~e~~~~l~~l~g~~~--~~~~~~~Ga~a~~a~l~a~~~~~~~-~g~-----~~~d~Vlv~~~~hg~~~~~ 98 (302)
+.+.++.++-.++-.+++++++.+. .-.++.+|+++++-+++++|..+.. .+. ....+|++|...|.+....
T Consensus 94 ~~~p~a~~~E~~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~~~~~P~ii~s~~aH~s~~Ka 173 (460)
T COG0076 94 DESPAAAELEERVVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEKA 173 (460)
T ss_pred ccChhHHHHHHHHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcccccCCCCeEEecCcchhHHHHH
Confidence 4677888899999999999999953 3556677788887777777765531 110 1123799999999999999
Q ss_pred HHhCCCEEEEeecCC-CCCCCHHHHHHHHhccCCCeEE--EEEecCC-CceeccccHHHHHHHHHHhCCEEEEecCCccc
Q psy7357 99 AQMAGMSVEPVSVRK-DGTIDFSDLETKVKKNKETLSC--LMITYPS-TFGVFEENITDVCELIHEHGGQVYLDGANMNA 174 (302)
Q Consensus 99 ~~~~g~~v~~i~~~~-~g~iD~~~l~~~i~~~~~~t~~--V~i~~Pn-~~G~~~~di~~I~~ia~~~g~llivD~a~~~~ 174 (302)
+...|++.+.+|.++ +..+|+++++++|+ +++.. |+.+-++ ++|.++ |+++|+++|+++++++|||+|....
T Consensus 174 a~~lG~~~~~v~~~~~~~~id~~~l~~~i~---~~t~~g~vV~~aGtT~~G~iD-di~~ia~ia~~~~i~lHVDAA~GG~ 249 (460)
T COG0076 174 ARYLGLGLRRVPTVPTDYRIDVDALEEAID---ENTIGGVVVGTAGTTDTGSID-DIEELADIAEEYGIWLHVDAAFGGF 249 (460)
T ss_pred HHHhCCCceeEEeccCccccCHHHHHHHHH---hhccCceEEEEecCCCCCccC-CHHHHHHHHHHcCCcEEEEccccce
Confidence 999999999999988 78999999999999 45554 6666565 799999 8999999999999999999985333
Q ss_pred ccccCCC------CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCC
Q psy7357 175 QVGLCRP------GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSH 216 (302)
Q Consensus 175 ~~~~~~p------~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~ 216 (302)
+..+..+ +..++|.++.+.||++..| +++|+++++++
T Consensus 250 ~~pf~~~~~~~~f~l~~vdSIt~d~HK~g~aP-----~~~G~il~rd~ 292 (460)
T COG0076 250 LLPFLEPDGRWDFGLEGVDSITVDGHKYGLAP-----IGCGVVLFRDE 292 (460)
T ss_pred eecccCccchhhcCCCCceEEEECcccccCCC-----CCceEEEEECH
Confidence 3323222 2236899999999999987 57889999864
No 75
>PRK07503 methionine gamma-lyase; Provisional
Probab=99.76 E-value=8.8e-18 Score=160.41 Aligned_cols=166 Identities=19% Similarity=0.221 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~i 109 (302)
....++++.++++.|.+.+ +..++|+.|...++.++. ++||+|+++.+.|+.... .+...|++++.+
T Consensus 65 p~~~~le~~lA~l~g~~~~-i~~~sG~~Al~~~l~~ll--------~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~v~~v 135 (403)
T PRK07503 65 PTLALLEQRMASLEGGEAA-VALASGMGAITATLWTLL--------RPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHV 135 (403)
T ss_pred chHHHHHHHHHHHhCCCcE-EEEcCHHHHHHHHHHHHc--------CCCCEEEEccCccchHHHHHHHHHhhCCEEEEEe
Confidence 3578899999999999765 556788876544444432 689999999998875432 345689999988
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
+.+ |+++++++++ ++|++|++++| |++|.+. |+++|+++|+++|+++++|+++.... ...|..+++|+
T Consensus 136 d~~-----d~~~l~~~i~---~~tklV~le~p~NPtG~~~-di~~I~~la~~~gi~lIvD~a~a~~~--~~~~l~~g~Di 204 (403)
T PRK07503 136 DLT-----DPAALKAAIS---DKTRMVYFETPANPNMRLV-DIAAVAEIAHGAGAKVVVDNTYCTPY--LQRPLELGADL 204 (403)
T ss_pred CCC-----CHHHHHHhcC---ccCcEEEEeCCCCCCCeee-CHHHHHHHHHHcCCEEEEECCCcccc--cCCchhhCCCE
Confidence 863 7999999998 78999999998 5899998 89999999999999999999874332 23455678999
Q ss_pred EEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 189 SHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
++.|++|+|+.+ |+.++|+++.++++++++.
T Consensus 205 ~v~S~tK~l~g~---gd~~gG~v~~~~~l~~~l~ 235 (403)
T PRK07503 205 VVHSATKYLGGH---GDITAGLVVGGKALADRIR 235 (403)
T ss_pred EEccccccccCC---CceeEEEEEcCHHHHHHHH
Confidence 999999999843 3356899988777766654
No 76
>PRK07681 aspartate aminotransferase; Provisional
Probab=99.76 E-value=7.6e-17 Score=153.67 Aligned_cols=178 Identities=15% Similarity=0.189 Sum_probs=131.6
Q ss_pred ccHHHHHHHHHHHHHHHhCC--Ce-eeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 30 RGYEQLIGELETDLCEITGY--DK-ISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~--~~-~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
+|..++++.+.+.+.+..|. +. .++..++|++ +...++.++. ++||.|++++|.|+.+...++..|++
T Consensus 69 ~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~--------~~Gd~Vlv~~P~y~~~~~~~~~~G~~ 140 (399)
T PRK07681 69 SGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLVHLPMVYA--------NPGDIILVPDPGYTAYETGIQMAGAT 140 (399)
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHHHHHHHHhC--------CCCCEEEECCCCccchHHHHHhcCCE
Confidence 68888888888888877674 44 5677788874 3322222222 68999999999999888888999999
Q ss_pred EEEeecCCC--CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcccc-ccc-
Q psy7357 106 VEPVSVRKD--GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMNAQ-VGL- 178 (302)
Q Consensus 106 v~~i~~~~~--g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~~~-~~~- 178 (302)
++.+|++++ ..+|++++++.+. +++++|++++| ||+|.+. +.+++|.++|+++|+++|.|.++.--. ...
T Consensus 141 ~~~v~~~~~~~~~~d~~~l~~~~~---~~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~ 217 (399)
T PRK07681 141 SYYMPLKKENDFLPDLELIPEEIA---DKAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNK 217 (399)
T ss_pred EEEEecCCCCCCcCCHHHHHHhcc---ccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCC
Confidence 999999754 3679999999887 68899999998 6999874 148889999999999999999874111 110
Q ss_pred -CC----CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 179 -CR----PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 179 -~~----p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
.+ +....-.|++.+.+|+|+.| |.|+||+++++++++.+.
T Consensus 218 ~~~~~~~~~~~~~~i~~~S~SK~~~~~----GlRiG~~i~~~~l~~~~~ 262 (399)
T PRK07681 218 PISFLSVPGAKEVGVEINSLSKSYSLA----GSRIGYMIGNEEIVRALT 262 (399)
T ss_pred CCChhhCCCCcccEEEEeecccccCCc----cceeEEEecCHHHHHHHH
Confidence 01 11112246677778877655 899999999887776553
No 77
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=99.76 E-value=3.5e-17 Score=155.06 Aligned_cols=164 Identities=18% Similarity=0.246 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~i 109 (302)
...+++++.+++++|.+.. +...+|+.|..++ +.+ + ++||+|+++++.|+.+.. .+...|++++.+
T Consensus 47 p~~~~le~~la~l~g~~~~-l~~~sG~~al~~~-l~l---l-----~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v 116 (378)
T TIGR01329 47 PTRTALESLLAKLDKADRA-FAFSSGMAALDVI-TRL---L-----NNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVHV 116 (378)
T ss_pred hHHHHHHHHHHHHhCCCcE-EEECCHHHHHHHH-HHH---h-----CCCCEEEEcCCCchHHHHHHHHHHHHcCcEEEEe
Confidence 4578999999999999654 4456676654222 222 1 689999999998876543 345689999999
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
+. .|+++++++++ ++|++|++++| |++|.+. |+++|+++||++|+++++|+++.... ...|.++|+|+
T Consensus 117 d~-----~d~~~le~~i~---~~tklv~le~psnptg~v~-dl~~I~~la~~~g~~vivD~a~~~~~--~~~~l~~g~Di 185 (378)
T TIGR01329 117 DT-----TDLDKVKAALG---PKTKLVLLESPTNPLQKIV-DIRKISEMAHAQNALVVVDNTMMSPL--LCNPLELGADI 185 (378)
T ss_pred CC-----CCHHHHHHhcC---cCceEEEEECCCCCCCeee-cHHHHHHHHHHcCCEEEEECCCcccc--cCChhhcCCcE
Confidence 86 38999999998 88999999999 5899998 89999999999999999999864332 34566789999
Q ss_pred EEeCCCcccCCCCCCCCCcceeEEEeC-CCCCCC
Q psy7357 189 SHLNLHKTFCIPHGGGGPGMGPIGVKS-HLAPFL 221 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~G~l~~~~-~l~~~l 221 (302)
++.++||+++.| ++...|++++++ ++.+++
T Consensus 186 ~v~S~tK~l~G~---~~~~~G~v~~~~~~~~~~~ 216 (378)
T TIGR01329 186 VYHSATKFLAGH---SDVMAGVLAVKGEEIAKKV 216 (378)
T ss_pred EEEecceeccCC---ccceeEEEEeCcHHHHHHH
Confidence 999999999843 123489998865 443444
No 78
>PRK05957 aspartate aminotransferase; Provisional
Probab=99.76 E-value=1.5e-17 Score=158.02 Aligned_cols=180 Identities=17% Similarity=0.192 Sum_probs=135.4
Q ss_pred cccHHHHHHHHHHHHHHHhCCC---eeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYD---KISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~---~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~ 104 (302)
.+|..++++++++.+++.+|.+ ..++..++|+ ++...++.++. +++|+|++++|.|..+...++..|+
T Consensus 64 ~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~--------~~gd~Vlv~~P~y~~~~~~~~~~g~ 135 (389)
T PRK05957 64 VQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNAILAIT--------DPGDEIILNTPYYFNHEMAITMAGC 135 (389)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHHHHHHhc--------CCCCEEEEeCCCCcCHHHHHHhcCC
Confidence 6899999999999999999974 3456667776 33323333322 6789999999998888777788999
Q ss_pred EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCCcc-cccc--c
Q psy7357 105 SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGANMN-AQVG--L 178 (302)
Q Consensus 105 ~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~~~-~~~~--~ 178 (302)
+++.+|.+.++.+|++++++.++ +++++|++++| |++|.+.+ ++++|.++|+++|+++++|.++.- .... .
T Consensus 136 ~~~~v~~~~~~~~d~~~l~~~i~---~~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~ 212 (389)
T PRK05957 136 QPILVPTDDNYQLQPEAIEQAIT---PKTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKH 212 (389)
T ss_pred EEEEeecCCCCCcCHHHHHHhcC---cCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCc
Confidence 99999998777899999999997 78999999998 58998752 499999999999999999998631 1110 0
Q ss_pred CC----CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 179 CR----PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 179 ~~----p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
.+ +....--|++.+..|.++.| |.|+|++++++++++++..
T Consensus 213 ~~~~~~~~~~~~~i~~~S~SK~~g~~----GlRiG~~~~~~~~~~~~~~ 257 (389)
T PRK05957 213 FSPGSIPGSGNHTISLYSLSKAYGFA----SWRIGYMVIPIHLLEAIKK 257 (389)
T ss_pred cChhhCCCccCcEEEEecchhhccCc----cceeEEEecCHHHHHHHHH
Confidence 01 11222236666677777544 8899999998887776653
No 79
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.76 E-value=2.7e-17 Score=158.22 Aligned_cols=146 Identities=14% Similarity=0.118 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH----HHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS----AQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~----~~~~g~~v~~i 109 (302)
....++++.++++.|.+.+ +.+.||+.|+.+++.++. ++||+||+++..|+..... +...|++++++
T Consensus 64 p~~~~le~~lA~l~g~~~a-v~~sSGt~Al~~al~~ll--------~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~v 134 (433)
T PRK08134 64 PTVAVLEERVAALEGGVGA-IATASGQAALHLAIATLM--------GAGSHIVASSALYGGSHNLLHYTLRRFGIETTFV 134 (433)
T ss_pred hHHHHHHHHHHHHhCCCcE-EEeCCHHHHHHHHHHHHh--------CCCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEE
Confidence 5689999999999998875 567788877655555542 6799999999988755332 34579999999
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
+.+ |+++++++|+ ++|++|++++| |++|.+. |+++|+++||++|+++++|+++..+.. ..|.++|+|+
T Consensus 135 d~~-----d~~~l~~~i~---~~TklV~~e~~~np~g~v~-Di~~I~~la~~~gi~livD~t~a~~~~--~~pl~~GaD~ 203 (433)
T PRK08134 135 KPG-----DIDGWRAAIR---PNTRLLFGETLGNPGLEVL-DIPTVAAIAHEAGVPLLVDSTFTTPYL--LRPFEHGADL 203 (433)
T ss_pred CCC-----CHHHHHHhcC---CCCeEEEEECCCcccCccc-CHHHHHHHHHHcCCEEEEECCCccccc--CCchhcCCCE
Confidence 863 8999999998 89999999998 5889999 899999999999999999998754443 4577899999
Q ss_pred EEeCCCcccCC
Q psy7357 189 SHLNLHKTFCI 199 (302)
Q Consensus 189 v~~~~hK~l~~ 199 (302)
++.|+||+++.
T Consensus 204 vv~S~tK~l~g 214 (433)
T PRK08134 204 VYHSATKFLGG 214 (433)
T ss_pred EEeccccccCC
Confidence 99999999873
No 80
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=99.76 E-value=1.4e-17 Score=158.32 Aligned_cols=163 Identities=17% Similarity=0.221 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~i 109 (302)
....++++.+++++|.+.+ +.+.+|..|+.++++++. ++||+||++++.|+.... .+...|++++.+
T Consensus 61 p~~~~le~~la~l~g~~~~-v~~ssG~~Ai~~al~al~--------~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~v 131 (390)
T PRK08133 61 PTVTMFQERLAALEGAEAC-VATASGMAAILAVVMALL--------QAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFV 131 (390)
T ss_pred hHHHHHHHHHHHHhCCCcE-EEECCHHHHHHHHHHHHh--------CCCCEEEEccCcchhHHHHHHHHHHHcCcEEEEE
Confidence 4578899999999998764 456677776655555543 689999999998876543 345789999999
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
+.+ |+++++++++ ++|++|++++| |++|.+. |+++|+++||++|+++++|.++... ....|..+|+|+
T Consensus 132 d~~-----d~~~l~~~i~---~~tklV~ie~p~NptG~v~-dl~~I~~la~~~gi~livD~t~~~~--~~~~pl~~g~Di 200 (390)
T PRK08133 132 DLT-----DLDAWRAAVR---PNTKLFFLETPSNPLTELA-DIAALAEIAHAAGALLVVDNCFCTP--ALQQPLKLGADV 200 (390)
T ss_pred CCC-----CHHHHHHhcC---cCCeEEEEECCCCCCCCcC-CHHHHHHHHHHcCCEEEEECCCccc--ccCCchhhCCcE
Confidence 863 8999999998 78999999999 5899998 8999999999999999999976332 234566789999
Q ss_pred EEeCCCcccCCCCCCCCCcc-eeEEEeCCCCCC
Q psy7357 189 SHLNLHKTFCIPHGGGGPGM-GPIGVKSHLAPF 220 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~-G~l~~~~~l~~~ 220 (302)
++.|++|+++.+ |.++ |+++.+++++++
T Consensus 201 vv~S~sK~~~g~----g~~~GG~vv~~~~~~~~ 229 (390)
T PRK08133 201 VIHSATKYLDGQ----GRVLGGAVVGSKELMEE 229 (390)
T ss_pred EEeecceeecCC----cceEeEEEEcCHHHHHH
Confidence 999999999743 4444 778777665443
No 81
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=99.75 E-value=2.5e-17 Score=156.24 Aligned_cols=164 Identities=20% Similarity=0.262 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~i 109 (302)
....++++.+++++|.+.+ +...+|+.|+.+++.++. +++|+|+++++.|+.... .+...|++++.+
T Consensus 54 p~~~~le~~la~l~g~~~~-~~~~sG~~Ai~~al~al~--------~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~~v~~v 124 (380)
T TIGR01325 54 PTVAAFEERIAALEGAERA-VATATGMSAIQAALMTLL--------QAGDHVVASRSLFGSTVGFISEILPRFGIEVSFV 124 (380)
T ss_pred chHHHHHHHHHHHhCCCcE-EEECCHHHHHHHHHHHHh--------CCCCEEEEecCCcchHHHHHHHHHHHhCCEEEEE
Confidence 4578999999999999765 446778877756665553 678999999888875432 456789999998
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
+.+ |+++++++++ +++++|++++| |++|.+. |+++|+++||++|+++++|+++.... ...|.++|+|+
T Consensus 125 ~~~-----d~~~l~~~i~---~~tklV~le~p~np~g~~~-dl~~I~~la~~~gi~livD~a~~~~~--~~~pl~~g~Di 193 (380)
T TIGR01325 125 DPT-----DLNAWEAAVK---PNTKLVFVETPSNPLGELV-DIAALAELAHAIGALLVVDNVFATPV--LQQPLKLGADV 193 (380)
T ss_pred CCC-----CHHHHHHhcC---CCceEEEEECCCCCCCeee-CHHHHHHHHHHcCCEEEEECCCcccc--cCCchhhCCCE
Confidence 863 7999999987 78999999999 5899998 89999999999999999999864322 23566789999
Q ss_pred EEeCCCcccCCCCCCCCCc-ceeEEEeCCCCCCC
Q psy7357 189 SHLNLHKTFCIPHGGGGPG-MGPIGVKSHLAPFL 221 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~-~G~l~~~~~l~~~l 221 (302)
++.|++|+++.+ |-. +|++++++++++.+
T Consensus 194 vv~S~sK~l~g~----g~~~gG~vv~~~~~~~~l 223 (380)
T TIGR01325 194 VVYSATKHIDGQ----GRVMGGVIAGSEELMAEV 223 (380)
T ss_pred EEeeccceecCC----CCeEEEEEEeCHHHHHHH
Confidence 999999999743 333 48888887665544
No 82
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=99.75 E-value=5.1e-17 Score=155.90 Aligned_cols=158 Identities=18% Similarity=0.218 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~i 109 (302)
....++++.+++++|.+.+ +...+|+.|..+++.++. ++||+|+++++.|+.... .+...|++++.+
T Consensus 57 p~~~~le~~lA~l~g~~~~-v~~~sG~~Ai~~al~~l~--------~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v 127 (418)
T TIGR01326 57 PTTDVLEQRIAALEGGVAA-LAVASGQAAITYAILNLA--------QAGDNIVSSSYLYGGTYNLFKHTLKRLGIEVRFV 127 (418)
T ss_pred hhHHHHHHHHHHHhCCCeE-EEEccHHHHHHHHHHHHh--------CCCCEEEEECCCcHHHHHHHHHHHHHcCcEEEEE
Confidence 4568999999999998654 556788877656665553 678999999988764422 356789999998
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
+.+ |+++++++++ +++++|++++| |++|.+. |+++|+++||++|+++++|+++... ....|.++++|+
T Consensus 128 ~~~-----d~~~l~~~l~---~~t~~V~le~p~NPtg~v~-dl~~I~~la~~~~i~livD~t~~~~--~~~~~l~~g~Di 196 (418)
T TIGR01326 128 DPD-----DPEEFEKAID---ENTKAVFAETIGNPAINVP-DIEAIAEVAHAHGVPLIVDNTFATP--YLCRPIDHGADI 196 (418)
T ss_pred CCC-----CHHHHHHhcC---cCCeEEEEECCCCCCCeec-CHHHHHHHHHHcCCEEEEECCCchh--hcCCchhcCCeE
Confidence 852 8999999998 78999999998 5899998 8999999999999999999987433 234566788999
Q ss_pred EEeCCCcccCCCCCCCCCcceeEEEeC
Q psy7357 189 SHLNLHKTFCIPHGGGGPGMGPIGVKS 215 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~G~l~~~~ 215 (302)
++.+++|+|+.+ |.++|++++++
T Consensus 197 vv~S~sK~l~g~----G~~lGg~v~~~ 219 (418)
T TIGR01326 197 VVHSATKYIGGH----GTAIGGVIVDG 219 (418)
T ss_pred EEECccccccCC----ccceEEEEEec
Confidence 999999999743 67788888864
No 83
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=99.75 E-value=6.6e-17 Score=151.53 Aligned_cols=172 Identities=16% Similarity=0.234 Sum_probs=127.9
Q ss_pred HHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCCC
Q psy7357 37 GELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGT 116 (302)
Q Consensus 37 ~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g~ 116 (302)
.++++.++++++.+..++..++|++.. ...+++.++ ++||+|+++++.|+.+...++..|.+++.++.++++.
T Consensus 62 ~~lr~~ia~~~~~~~~~i~it~G~~~~--l~~~~~~l~-----~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~ 134 (351)
T PRK14807 62 EKLREELARYCSVVPTNIFVGNGSDEI--IHLIMLAFI-----NKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLKEDYT 134 (351)
T ss_pred HHHHHHHHHHhCCCcccEEEecCHHHH--HHHHHHHhc-----CCCCEEEEeCCChHHHHHHHHHcCCeEEEeecCCCCC
Confidence 678888999999887777778887532 122222221 6899999999988776677788999999999987788
Q ss_pred CCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccc-cCC-CCccCCcEEEeCC
Q psy7357 117 IDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVG-LCR-PGDYGSDVSHLNL 193 (302)
Q Consensus 117 iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~-~~~-p~~~gaDiv~~~~ 193 (302)
+|++++++++++ .++++|++++| |++|..- +.+++.+++++++.++++|.++.--... ..+ .....--|++.|.
T Consensus 135 ~d~~~l~~~~~~--~~~k~v~l~~p~NPtG~~~-~~~~l~~l~~~~~~~~ivDe~y~~~~~~~~~~~~~~~~~vi~~~S~ 211 (351)
T PRK14807 135 YDVGSFIKVIEK--YQPKLVFLCNPNNPTGSVI-EREDIIKIIEKSRGIVVVDEAYFEFYGNTIVDVINEFENLIVLRTL 211 (351)
T ss_pred CCHHHHHHHhhc--cCCCEEEEeCCCCCCCCCC-CHHHHHHHHHhCCCEEEEeCcchhhcccchHHHhhhCCCEEEEecc
Confidence 999999999972 37899999999 5999998 7999999999988889999987311111 001 1112223666767
Q ss_pred CcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 194 HKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 194 hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+|+|+.| |.|+|++++++++++.+.
T Consensus 212 SK~~~~~----GlRiG~~v~~~~~~~~~~ 236 (351)
T PRK14807 212 SKAFGLA----GLRVGYAVANENILKYLN 236 (351)
T ss_pred hHhcccc----hhceeeeecCHHHHHHHH
Confidence 7777655 899999999887766553
No 84
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.75 E-value=3.4e-17 Score=157.54 Aligned_cols=151 Identities=18% Similarity=0.194 Sum_probs=120.7
Q ss_pred cccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~ 104 (302)
+.-.-....++++.++++.|.+. .+.+.||+.|..+++.++. ++||+||+++..|+.+.. .+...|+
T Consensus 64 ~r~~~pt~~~le~~la~l~g~~~-~v~fsSG~~Ai~~al~~ll--------~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi 134 (437)
T PRK05613 64 SRLTNPTVEALENRIASLEGGVH-AVAFASGQAAETAAILNLA--------GAGDHIVTSPRLYGGTETLFLVTLNRLGI 134 (437)
T ss_pred eCccChHHHHHHHHHHHHhCCCe-EEEeCCHHHHHHHHHHHhc--------CCCCEEEECCCccHHHHHHHHHHHHhcCe
Confidence 33344678999999999999865 4566788876655555443 689999999989887632 3467899
Q ss_pred EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCc
Q psy7357 105 SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGD 183 (302)
Q Consensus 105 ~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~ 183 (302)
++++++ ++ .|+++++++++ ++|++|++.+| |++|.+. |+++|+++||++|+++++|+++.. +...+|.+
T Consensus 135 ~v~~vd-~~---~d~e~l~~~l~---~~tk~V~~e~~~Np~~~v~-di~~I~~la~~~gi~livD~t~a~--g~~~~p~~ 204 (437)
T PRK05613 135 EVTFVE-NP---DDPESWQAAVQ---PNTKAFFGETFANPQADVL-DIPAVAEVAHRNQVPLIVDNTIAT--AALVRPLE 204 (437)
T ss_pred EEEEEC-CC---CCHHHHHHhCC---ccCeEEEEECCCCCCCccc-CHHHHHHHHHHcCCeEEEECCCcc--ccccChHH
Confidence 999998 33 28999999998 78999998877 6888888 899999999999999999998643 33356778
Q ss_pred cCCcEEEeCCCcccC
Q psy7357 184 YGSDVSHLNLHKTFC 198 (302)
Q Consensus 184 ~gaDiv~~~~hK~l~ 198 (302)
+|+|+++.|+||+++
T Consensus 205 ~GaDivv~S~~K~l~ 219 (437)
T PRK05613 205 LGADVVVASLTKFYT 219 (437)
T ss_pred hCCCEEEeeccceec
Confidence 999999999999886
No 85
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=99.75 E-value=5.2e-17 Score=155.05 Aligned_cols=161 Identities=22% Similarity=0.205 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~i 109 (302)
....++++.++++.|.+. .+...+|..|..+++.++. ++||+|++++..|+.... .++..|++++.+
T Consensus 70 p~~~~le~~lA~l~g~~~-al~~~sG~~Ai~~~l~all--------~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~v 140 (403)
T PRK07810 70 PTVSMFEERLRLIEGAEA-CFATASGMSAVFTALGALL--------GAGDRLVAARSLFGSCFVVCNEILPRWGVETVFV 140 (403)
T ss_pred chHHHHHHHHHHHhCCCc-EEEECChHHHHHHHHHHHh--------CCCCEEEEccCCcchHHHHHHHHHHHcCcEEEEE
Confidence 347899999999999875 4566788877655555543 689999999887755432 355789999999
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
+. .|+++++++++ ++|++|++++| |++|.+. |+++|+++||++|+++++|+++.... ...|.++|+|+
T Consensus 141 d~-----~d~~~l~~ai~---~~tklV~~esp~Nptg~v~-dl~~I~~la~~~g~~vivD~a~a~~~--~~~~~~~gaDi 209 (403)
T PRK07810 141 DG-----EDLSQWEEALS---VPTQAVFFETPSNPMQSLV-DIAAVSELAHAAGAKVVLDNVFATPL--LQRGLPLGADV 209 (403)
T ss_pred CC-----CCHHHHHHhcC---cCceEEEEECCCCCCCeec-CHHHHHHHHHHcCCEEEEECCCCccc--cCChhhcCCcE
Confidence 75 38999999998 78999999999 5899998 89999999999999999999864332 33566789999
Q ss_pred EEeCCCcccCCCCCCCCCc-ceeEEEeCCCC
Q psy7357 189 SHLNLHKTFCIPHGGGGPG-MGPIGVKSHLA 218 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~-~G~l~~~~~l~ 218 (302)
++.+++|+|+++ |.. +|+++++++.+
T Consensus 210 vv~S~tK~l~g~----g~~~gG~v~~~~~~~ 236 (403)
T PRK07810 210 VVYSGTKHIDGQ----GRVLGGAILGDREYI 236 (403)
T ss_pred EEccCCceecCC----cCceeEEEEeChHHH
Confidence 999999999742 333 58888887543
No 86
>PRK06207 aspartate aminotransferase; Provisional
Probab=99.75 E-value=2.3e-17 Score=157.67 Aligned_cols=179 Identities=17% Similarity=0.192 Sum_probs=133.9
Q ss_pred cccHHHHHHHHHHHHHHHhCC--Ce-eeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGY--DK-ISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~--~~-~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~ 104 (302)
.+|..++++.+.+++++.+|. +. .++..++|+ ++...++.++. ++||+|++++|.|+.+...++..|.
T Consensus 77 ~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~~~~~~l~--------~~Gd~Vlv~~P~y~~~~~~~~~~g~ 148 (405)
T PRK06207 77 YRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGALFLAVAATV--------ARGDKVAIVQPDYFANRKLVEFFEG 148 (405)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhc--------CCCCEEEEeCCCchhHHHHHHHcCC
Confidence 578899999999999999895 33 566667776 44433333332 6899999999999888888889999
Q ss_pred EEEEeecCC-----CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCccc-c
Q psy7357 105 SVEPVSVRK-----DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMNA-Q 175 (302)
Q Consensus 105 ~v~~i~~~~-----~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~~-~ 175 (302)
+++.++++. +..+|+++|+++++ +++++|++++| |++|.+- +++++|.++|+++|+++|+|.++..- .
T Consensus 149 ~v~~v~~~~~~~~~~~~~d~~~l~~~~~---~~~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~ 225 (405)
T PRK06207 149 EMVPVQLDYLSADKRAGLDLDQLEEAFK---AGVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLY 225 (405)
T ss_pred EEEEEeccccCcccCCCcCHHHHHHhhh---hcCeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccccc
Confidence 999999862 45789999999997 67889999999 5999874 15888999999999999999986421 1
Q ss_pred cc--cCCCCccCC---c-EEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 176 VG--LCRPGDYGS---D-VSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 176 ~~--~~~p~~~ga---D-iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
.+ ......+.. . |++.+.+|+|+.| |.|+|++++++++++.+.
T Consensus 226 ~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lp----GlRiG~ii~~~~l~~~~~ 274 (405)
T PRK06207 226 DGTSYTHLRALPIDPENVITIMGPSKTESLS----GYRLGVAFGSPAIIDRME 274 (405)
T ss_pred CCCCCCchhcCCCCcCcEEEEecchhhccCc----ccceEEEEcCHHHHHHHH
Confidence 11 111111111 2 6666677877755 899999999887776653
No 87
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=99.75 E-value=9.5e-17 Score=152.02 Aligned_cols=179 Identities=16% Similarity=0.152 Sum_probs=130.2
Q ss_pred cccHHHHHHHHHHHHHHHhCCC--ee-eEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYD--KI-SFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~--~~-~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~ 104 (302)
.+|..++++++.+.+.+.+|.+ .. ++..++|+ ++...++.+ +. ++||.|+++++.|+.+...++..|.
T Consensus 66 ~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~l~~~~~~---~~-----~~gd~vlv~~P~y~~~~~~~~~~G~ 137 (383)
T TIGR03540 66 YEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAHIPLA---FV-----NPGDIVLVPDPGYPVYRIGTLFAGG 137 (383)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHHHHHHHHH---hC-----CCCCEEEEeCCCCcchHHHHHhcCC
Confidence 5788888888888888777763 33 46666676 433232222 21 6899999999999888888889999
Q ss_pred EEEEeecCCC-C-CCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCCcc-cccc-
Q psy7357 105 SVEPVSVRKD-G-TIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGANMN-AQVG- 177 (302)
Q Consensus 105 ~v~~i~~~~~-g-~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~~~-~~~~- 177 (302)
+++.+|.+++ | .+|++++++.+. +++++|++++| |++|...+ .+++|.++|+++|+++|+|.++.- ....
T Consensus 138 ~v~~v~~~~~~g~~~d~~~l~~~~~---~~~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~ 214 (383)
T TIGR03540 138 EPYEMPLKEENGFLPDFDAIPEDIA---KKAKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGY 214 (383)
T ss_pred EEEEEecCcccCCccCHHHHHhhcc---ccceEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCC
Confidence 9999999753 3 579999999987 68899999998 59998741 489999999999999999998731 1111
Q ss_pred -cCCCC----ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 178 -LCRPG----DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 178 -~~~p~----~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
..+.. .....|++.+..|+|+.| |.|+|++++++++.+.+.
T Consensus 215 ~~~~~~~~~~~~~~~i~~~SfSK~~g~~----GlRiG~~i~~~~l~~~~~ 260 (383)
T TIGR03540 215 KAPSFLEVDGAKDVGIEFHSLSKTYNMT----GWRIGMAVGNADLIAGLG 260 (383)
T ss_pred CCcCcccCCCcccCEEEEEecccccCCc----cceeeEEeCCHHHHHHHH
Confidence 01111 112236667777777644 889999999887766553
No 88
>PRK08114 cystathionine beta-lyase; Provisional
Probab=99.75 E-value=1.8e-17 Score=157.12 Aligned_cols=164 Identities=13% Similarity=0.119 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH----HHhCCCEEEE
Q psy7357 33 EQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS----AQMAGMSVEP 108 (302)
Q Consensus 33 l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~----~~~~g~~v~~ 108 (302)
-.-...+++++++|-|.+.+.+ ..||..|..++++++. ++||+||+++..|+..... ++..|+++.+
T Consensus 61 nPt~~~le~~la~LEg~~~a~~-~~SGmaAi~~~~~~ll--------~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~ 131 (395)
T PRK08114 61 TLTHFSLQEAMCELEGGAGCAL-YPCGAAAVANAILAFV--------EQGDHVLMTGTAYEPTQDFCSKILSKLGVTTTW 131 (395)
T ss_pred ChhHHHHHHHHHHHhCCCeEEE-EhHHHHHHHHHHHHHc--------CCCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEE
Confidence 3567889999999999887655 4558777655555553 6899999998888665443 4567999999
Q ss_pred eecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhC--CEEEEecCCcccccccCCCCccC
Q psy7357 109 VSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHG--GQVYLDGANMNAQVGLCRPGDYG 185 (302)
Q Consensus 109 i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g--~llivD~a~~~~~~~~~~p~~~g 185 (302)
++. .|.++++++++ ++|++|++++| |++|.+. |+++|+++||++| ++++||+++.. +.+.+|.++|
T Consensus 132 vd~-----~d~~~l~~~l~---~~TrlV~~EtpsNp~~~v~-DI~~Ia~ia~~~g~g~~lvVDnT~a~--p~~~~pl~~G 200 (395)
T PRK08114 132 FDP-----LIGADIAKLIQ---PNTKVVFLESPGSITMEVH-DVPAIVAAVRSVNPDAVIMIDNTWAA--GVLFKALDFG 200 (395)
T ss_pred ECC-----CCHHHHHHhcC---CCceEEEEECCCCCCCEee-cHHHHHHHHHHhCCCCEEEEECCCcc--ccccCHHHcC
Confidence 874 47899999998 78999999998 6899999 8999999999985 99999987644 3347899999
Q ss_pred CcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCC
Q psy7357 186 SDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAP 219 (302)
Q Consensus 186 aDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~ 219 (302)
+|+++.|+||+|+++- .-.+|+++.++++++
T Consensus 201 aDivv~S~tKyl~Ghs---dv~~G~v~~~~~~~~ 231 (395)
T PRK08114 201 IDISIQAGTKYLVGHS---DAMIGTAVANARCWE 231 (395)
T ss_pred CcEEEEcCcccccCCC---cceeEEEEcCHHHHH
Confidence 9999999999998542 236788877765544
No 89
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=99.75 E-value=1.9e-17 Score=156.65 Aligned_cols=165 Identities=16% Similarity=0.120 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~i 109 (302)
....++++.++++.|.+.+. ...+|..|+.+++.++. ++||+||++++.|+.... .....|+++..+
T Consensus 50 Pt~~~lE~~lA~l~g~~~~~-~~~sG~~Ai~~al~all--------~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~v~~~ 120 (377)
T TIGR01324 50 LTHFALQDAMCELEGGAGCY-LYPSGLAAVTNSILAFV--------KAGDHVLMVDSAYEPTRYFCDIVLKRMGVDITYY 120 (377)
T ss_pred ccHHHHHHHHHHHhCCCcEE-EECcHHHHHHHHHHHhc--------CCCCEEEEcCCCcHHHHHHHHHHHHhcCcEEEEE
Confidence 45678999999999987654 45677777656655553 689999999988765443 234678888877
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
+.+ +.++++++++ ++|++|++++| |++|... |+++|+++||++|+++++|+++..+. ..+|.++|+|+
T Consensus 121 d~~-----~~e~l~~~i~---~~tklV~lesp~Np~g~~~-dl~~I~~la~~~g~~livD~t~a~g~--~~~pl~~gaDi 189 (377)
T TIGR01324 121 DPL-----IGEDIATLIQ---PNTKVLFLEAPSSITFEIQ-DIPAIAKAARNPGIVIMIDNTWAAGL--LFKPLEHGVDI 189 (377)
T ss_pred CCC-----CHHHHHHhcC---CCceEEEEECCCCCCCcHH-HHHHHHHHHHHcCCEEEEECCCcccc--ccCccccCceE
Confidence 542 2378999988 88999999998 5888888 89999999999999999999875443 34688899999
Q ss_pred EEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 189 SHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
++.+++|+++.+ ++..+|+++++++.++++
T Consensus 190 vv~S~tK~l~G~---~d~~gG~v~~~~~~~~~l 219 (377)
T TIGR01324 190 SIQAGTKYLVGH---SDIMIGTVVANARTWDQL 219 (377)
T ss_pred EEecCceeccCC---CCceEEEEEeCHHHHHHH
Confidence 999999999854 233578888887665544
No 90
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=99.75 E-value=2.4e-17 Score=155.73 Aligned_cols=169 Identities=20% Similarity=0.172 Sum_probs=132.9
Q ss_pred cHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEE
Q psy7357 31 GYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSV 106 (302)
Q Consensus 31 G~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v 106 (302)
.......++++.+++++|.+.+ +...+|..|+.+++.++. +++|+|+++++.|+.... .+...|+++
T Consensus 37 ~~~p~~~~le~~la~l~g~~~a-~~~~sG~~Ai~~~l~~l~--------~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~ 107 (369)
T cd00614 37 IGNPTVDALEKKLAALEGGEAA-LAFSSGMAAISTVLLALL--------KAGDHVVASDDLYGGTYRLFERLLPKLGIEV 107 (369)
T ss_pred CCChhHHHHHHHHHHHHCCCCE-EEEcCHHHHHHHHHHHHc--------CCCCEEEECCCCcchHHHHHHHHHhhcCeEE
Confidence 3447789999999999998765 445778777656665553 689999999988876543 344678899
Q ss_pred EEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccC
Q psy7357 107 EPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYG 185 (302)
Q Consensus 107 ~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~g 185 (302)
+.++.+ |+++++++++ +++++|++++| |++|.+. |+++|+++||++|+++++|+++... ....|.+++
T Consensus 108 ~~v~~~-----d~~~l~~~i~---~~~~~v~~e~~~np~g~~~-dl~~i~~la~~~g~~livD~t~~~~--~~~~~~~~g 176 (369)
T cd00614 108 TFVDPD-----DPEALEAAIK---PETKLVYVESPTNPTLKVV-DIEAIAELAHEHGALLVVDNTFATP--YLQRPLELG 176 (369)
T ss_pred EEeCCC-----CHHHHHHhcC---CCCeEEEEECCCCCCCeec-CHHHHHHHHHHcCCEEEEECCCcch--hcCChhhhC
Confidence 888863 6999999997 68999999998 6899998 8999999999999999999986433 234567789
Q ss_pred CcEEEeCCCcccCCCCCCCCCcceeEEEeC-CCCCCCC
Q psy7357 186 SDVSHLNLHKTFCIPHGGGGPGMGPIGVKS-HLAPFLP 222 (302)
Q Consensus 186 aDiv~~~~hK~l~~p~~~gGp~~G~l~~~~-~l~~~lp 222 (302)
+|+++.+++|+++.+ |...+|++++++ ++++++.
T Consensus 177 ~Divv~S~tK~l~g~---~~~~gG~v~~~~~~l~~~l~ 211 (369)
T cd00614 177 ADIVVHSATKYIGGH---SDVIAGVVVGSGEALIQRLR 211 (369)
T ss_pred CcEEEeccceeccCC---CCceEEEEEeCcHHHHHHHH
Confidence 999999999998743 225689999987 6665553
No 91
>PLN02263 serine decarboxylase
Probab=99.75 E-value=1.1e-16 Score=153.57 Aligned_cols=176 Identities=17% Similarity=0.157 Sum_probs=136.7
Q ss_pred cHHHHHHHHHHHHHHHhCCCe---eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEE
Q psy7357 31 GYEQLIGELETDLCEITGYDK---ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVE 107 (302)
Q Consensus 31 G~l~~~~e~~~~l~~l~g~~~---~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~ 107 (302)
+..++-.++-+++++++|.+. .-..+++|+++++.++.+.|.+ .++..+++|+.+|.+....+...|++++
T Consensus 130 ~s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~------~~~~vvy~S~~aH~Sv~KAa~llgi~~~ 203 (470)
T PLN02263 130 HSRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREV------FPDGILYASRESHYSVFKAARMYRMECV 203 (470)
T ss_pred hHHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhh------cCCcEEEEcCCccHHHHHHHHhcCCcce
Confidence 688889999999999999864 2345667778776777666643 2345889999999888889999999999
Q ss_pred EeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCC-CceeccccHHHHHHHHHHhCC-----EEEEecCCccccccc--C
Q psy7357 108 PVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPS-TFGVFEENITDVCELIHEHGG-----QVYLDGANMNAQVGL--C 179 (302)
Q Consensus 108 ~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~g~-----llivD~a~~~~~~~~--~ 179 (302)
.||++++|.+|+++|+++|+++..++.+|+.+-++ .+|.++ |+++|+++|+++|+ ++|||+|..-....+ .
T Consensus 204 ~Vp~d~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiD-pi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~ 282 (470)
T PLN02263 204 KVDTLVSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVD-DLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKR 282 (470)
T ss_pred EeccCCCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCC-CHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhccc
Confidence 99999999999999999998544445666666665 789999 89999999999997 999999853111111 1
Q ss_pred CC---CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCC
Q psy7357 180 RP---GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLA 218 (302)
Q Consensus 180 ~p---~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~ 218 (302)
.| +..++|-++.+.||++..|+ +.|+++++++..
T Consensus 283 ~~~~df~~~vDSIsvD~HK~l~~P~-----~cgvll~R~~~~ 319 (470)
T PLN02263 283 APKVTFKKPIGSVSVSGHKFVGCPM-----PCGVQITRMEHI 319 (470)
T ss_pred ccccCCCcCccEEEECCccccCCCc-----CEEEEEEehhhH
Confidence 11 12248999999999999874 567888886544
No 92
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=99.75 E-value=4.2e-17 Score=152.15 Aligned_cols=169 Identities=20% Similarity=0.267 Sum_probs=128.1
Q ss_pred HHHHHHHHHHhCCCeeeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCC
Q psy7357 37 GELETDLCEITGYDKISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDG 115 (302)
Q Consensus 37 ~e~~~~l~~l~g~~~~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g 115 (302)
.++++.++++++++..++..++|++ +...++.++. +++|+|+++++.|+.+...++..|.+++.+|+++++
T Consensus 57 ~~lr~~ia~~~~~~~~~i~~~~G~~~~l~~~~~~l~--------~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~~~~ 128 (346)
T TIGR01141 57 AELKQALADYYGVDPEQILLGNGSDEIIELLIRAFL--------EPGDAVLVPPPTYSMYEISAKIHGAEVVKVPLDEDG 128 (346)
T ss_pred HHHHHHHHHHhCcChHHEEEcCCHHHHHHHHHHHhc--------CCCCEEEEcCCCHHHHHHHHHHcCCeEEEeccCCCC
Confidence 5788999999998776677777764 4323333332 578999999998876666778899999999998888
Q ss_pred CCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHh--CCEEEEecCCcccccccCCC----CccCCcE
Q psy7357 116 TIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEH--GGQVYLDGANMNAQVGLCRP----GDYGSDV 188 (302)
Q Consensus 116 ~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~--g~llivD~a~~~~~~~~~~p----~~~gaDi 188 (302)
.+|++++++.++ +++++|++++| |++|... +++++.++++.+ |+++++|.++. .+..-..+ .....++
T Consensus 129 ~~d~~~l~~~~~---~~~~~v~l~~p~NptG~~~-~~~~~~~l~~~~~~~~~ii~D~~y~-~~~~~~~~~~~~~~~~~~i 203 (346)
T TIGR01141 129 QLDLEDILVAID---DKPKLVFLCSPNNPTGNLL-SRSDIEAVLERTPEDALVVVDEAYG-EFSGEPSTLPLLAEYPNLI 203 (346)
T ss_pred CCCHHHHHHhcC---CCCCEEEEeCCCCCCCCCC-CHHHHHHHHHhCCCCcEEEEECchh-hhcCCccHHHHHhhCCCEE
Confidence 899999999876 78899999998 5999998 799999999887 99999999864 11110011 1122246
Q ss_pred EEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 189 SHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
++.+.+|+|+.| |+|+|++++++++.+++.
T Consensus 204 ~~~S~sK~~g~~----G~r~G~~~~~~~~~~~~~ 233 (346)
T TIGR01141 204 VLRTLSKAFGLA----GLRIGYAIANAEIIDALN 233 (346)
T ss_pred EEehhhHhhhch----hhhceeeecCHHHHHHHH
Confidence 677788988644 789999999887766654
No 93
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=99.75 E-value=9.2e-17 Score=153.42 Aligned_cols=169 Identities=18% Similarity=0.197 Sum_probs=127.5
Q ss_pred ccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH----HHHHhCCCE
Q psy7357 30 RGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP----ASAQMAGMS 105 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~----~~~~~~g~~ 105 (302)
.+......+++++++++.|.+. .+...+|+.+...++.++. ++||+|+++.+.|+... ..++..|.+
T Consensus 56 R~~~p~~~~Le~~lA~l~g~~~-~v~~~sG~~Ai~~~l~all--------~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~ 126 (405)
T PRK08776 56 RSGNPTRDLLGEALAELEGGAG-GVITATGMGAINLVLNALL--------QPGDTLVVPHDAYGGSWRLFNALAKKGHFA 126 (405)
T ss_pred CCCChHHHHHHHHHHHHhCCCc-eEEEcCHHHHHHHHHHHHh--------CCCCEEEEccCCchHHHHHHHHHHHhcCcE
Confidence 3344567889999999999865 4566778765544444432 68999999988887533 234566888
Q ss_pred EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCcc
Q psy7357 106 VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDY 184 (302)
Q Consensus 106 v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~ 184 (302)
++.++. .|+++++++++ ++|++|++++| |++|.+. |+++|+++|+++|+++++|+++... ....|.++
T Consensus 127 v~~v~~-----~d~~~l~~~i~---~~tklV~l~~P~NPtG~v~-dl~~I~~la~~~gi~vIvD~a~a~~--~~~~pl~~ 195 (405)
T PRK08776 127 LITADL-----TDPRSLADALA---QSPKLVLIETPSNPLLRIT-DLRFVIEAAHKVGALTVVDNTFLSP--ALQKPLEF 195 (405)
T ss_pred EEEECC-----CCHHHHHHhcC---cCCeEEEEECCCCCCCccC-CHHHHHHHHHHcCCEEEEECCCccc--ccCCcccc
Confidence 888875 48999999997 78999999999 6999998 8999999999999999999987433 23467778
Q ss_pred CCcEEEeCCCcccCCCCCCCCCcceeEEEe-CCCCCCC
Q psy7357 185 GSDVSHLNLHKTFCIPHGGGGPGMGPIGVK-SHLAPFL 221 (302)
Q Consensus 185 gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~l 221 (302)
|+|+++.|.||+|+.| |+-..|+++++ +++.+++
T Consensus 196 gaDivv~S~tK~l~g~---~~~~~G~vv~~~~~l~~~l 230 (405)
T PRK08776 196 GADLVLHSTTKYINGH---SDVVGGAVVARDAELHQQL 230 (405)
T ss_pred cCCEEEecCceeecCC---CCceEEEEEeCCHHHHHHH
Confidence 9999999999999843 22236777775 4554444
No 94
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.75 E-value=3.5e-16 Score=146.21 Aligned_cols=242 Identities=16% Similarity=0.149 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCC
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRK 113 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~ 113 (302)
....++++.+++.+|+.++. ..+||+.|...+++++. -++||+||+|...|..+.......|++++++++|+
T Consensus 34 ~~v~~FE~~~ae~~G~k~av-a~~sgT~AL~laL~al~-------ig~GDeVI~ps~TfvATan~i~~~Ga~PVFvDid~ 105 (374)
T COG0399 34 PFVRRFEQAFAEYLGVKYAV-AVSSGTAALHLALLALA-------IGPGDEVIVPSFTFVATANAVLLVGAKPVFVDIDP 105 (374)
T ss_pred hHHHHHHHHHHHHhCCCeEE-EecChHHHHHHHHHhcC-------CCCCCEEEecCCchHHHHHHHHHcCCeEEEEecCC
Confidence 46789999999999999874 46788877655555433 27899999999988777777779999999999997
Q ss_pred C-CCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCccccccc-CCCCccCCcEEEe
Q psy7357 114 D-GTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGL-CRPGDYGSDVSHL 191 (302)
Q Consensus 114 ~-g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~-~~p~~~gaDiv~~ 191 (302)
+ +.+|++.||++|+ ++|++|+..+ .+|... |+++|.++|++||+++|-|+||..+..-- ...|.+| |+.++
T Consensus 106 ~T~nid~~~ie~aIt---~~tKAIipVh--l~G~~~-dm~~i~~la~~~~l~vIEDaAqa~Ga~y~gk~vGt~G-d~~~f 178 (374)
T COG0399 106 DTLNIDPDLIEAAIT---PRTKAIIPVH--LAGQPC-DMDAIMALAKRHGLPVIEDAAQAHGATYKGKKVGSFG-DIGAF 178 (374)
T ss_pred cccCCCHHHHHHHcc---cCCeEEEEeh--hccCCC-CHHHHHHHHHHcCCeEEEEcchhccCeecCccccccc-ceEEE
Confidence 4 8999999999999 8899999977 778888 89999999999999999999985443321 4567776 88777
Q ss_pred CCC--cccCCCCCCCCCcceeEEEeC-CCCCCC-----CCCccc---C-------CCCcchhhhHHHHhhHh------hH
Q psy7357 192 NLH--KTFCIPHGGGGPGMGPIGVKS-HLAPFL-----PVHPLS---S-------IDSSIGAVSAAHYGSAS------IL 247 (302)
Q Consensus 192 ~~h--K~l~~p~~~gGp~~G~l~~~~-~l~~~l-----pg~~~~---~-------~~~~l~~~~a~~~~~~~------~~ 247 (302)
|.| |.+. . | -+|++.+++ ++++++ -|.... + .|.-|..+.|++-..-+ +.
T Consensus 179 SF~~~K~it----t-g-EGGav~tnd~ela~k~~~lr~hG~~~~~~~~y~~~~~G~N~rm~~iqAAigl~QL~~l~~~~~ 252 (374)
T COG0399 179 SFHATKNLT----T-G-EGGAVVTNDEELAEKARSLRNHGLSRDAVFKYLHEELGYNYRLTEIQAAIGLAQLERLDEINE 252 (374)
T ss_pred EecCCCCcc----c-c-CceEEEeCCHHHHHHHHHHHHhCcCCCccccceeeecccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 754 4443 2 2 568999984 666654 233220 1 56777777765554432 11
Q ss_pred HH---HHHHHHHHh--cccccccccCCCcceeEEEEEEeccccccCCCCHHHHHHHhh
Q psy7357 248 PI---SWAYIRRLE--SHYKTLFRSSRSGLVAHEFVIDVRDFKKSANIEAVDIAKRLM 300 (302)
Q Consensus 248 ~~---~~~y~~~l~--~g~~~~~~~~~~~~~~he~~~~~~~~~~~~g~~~~~~~~~l~ 300 (302)
.+ +..|.+.|+ .++.+.....+.....|++.+.+++- |.+-.++.+.|-
T Consensus 253 ~R~~~a~~Y~~~l~~~~~~~~p~~~~~~~~~~~~~~i~~~~~----~~~R~~l~~~L~ 306 (374)
T COG0399 253 RRREIAQIYAEALKGLPGITLPPEPDGAVHAWHLYTILVDEE----GISRDALMESLK 306 (374)
T ss_pred HHHHHHHHHHHHhhcCCCccccCCCCCceeeeeeeEEEecCC----CCCHHHHHHHHH
Confidence 11 114554665 35666655444235689999998852 466666766664
No 95
>PRK09028 cystathionine beta-lyase; Provisional
Probab=99.74 E-value=2.3e-17 Score=156.69 Aligned_cols=164 Identities=16% Similarity=0.092 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEEEEee
Q psy7357 35 LIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSVEPVS 110 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~i~ 110 (302)
-..++++.++++.|.+.+ +...+|..|+.++++++. ++||+||++++.|+.... .....|+++..++
T Consensus 62 t~~~Le~~iA~le~~~~~-~~~~sG~~Ai~~~l~all--------~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi~v~~v~ 132 (394)
T PRK09028 62 THFAFQAAIVELEGGAGT-ALYPSGAAAISNALLSFL--------KAGDHLLMVDSCYEPTRDLCDKILKGFGIETTYYD 132 (394)
T ss_pred hHHHHHHHHHHHhCCCcE-EEECCHHHHHHHHHHHHh--------CCCCEEEEECCCcHHHHHHHHHhhhhcceEEEEEC
Confidence 356888999999887654 345667777655665553 689999999998865543 2346788888776
Q ss_pred cCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcEE
Q psy7357 111 VRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDVS 189 (302)
Q Consensus 111 ~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDiv 189 (302)
.+ |.++++++++ ++|++|++++| |++|.+. |+++|+++||++|+++++|+++... ...+|.++|+|++
T Consensus 133 ~~-----~~e~l~~~l~---~~TklV~lespsNPtg~v~-dl~~I~~la~~~g~~lvvD~t~a~p--~~~~Pl~~GaDiv 201 (394)
T PRK09028 133 PM-----IGEGIRELIR---PNTKVLFLESPGSITMEVQ-DVPTLSRIAHEHDIVVMLDNTWASP--INSRPFEMGVDIS 201 (394)
T ss_pred CC-----CHHHHHHhcC---cCceEEEEECCCCCCCcHH-HHHHHHHHHHHcCCEEEEECCcccc--ccCCccccCceEE
Confidence 42 5688999987 88999999999 5889888 8999999999999999999987443 3467889999999
Q ss_pred EeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 190 HLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 190 ~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
+.++||+++++ +.--.|.++.++++.+++
T Consensus 202 v~S~tK~l~Gh---~d~~~G~~~~~~~~~~~l 230 (394)
T PRK09028 202 IQAATKYIVGH---SDVMLGTATANEKHWDQL 230 (394)
T ss_pred EEeCCeEecCC---CCEEEEEEECCHHHHHHH
Confidence 99999999844 223467776665554433
No 96
>PRK08064 cystathionine beta-lyase; Provisional
Probab=99.74 E-value=6.5e-17 Score=153.85 Aligned_cols=169 Identities=20% Similarity=0.222 Sum_probs=129.3
Q ss_pred cccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~ 104 (302)
+........++++.++++.|.+. .+..++|+.+..+++. +. ++||+||++++.|+.+.. .++..|+
T Consensus 49 ~r~~~p~~~~le~~lA~l~g~~~-~v~~~sG~~ai~~~l~-~l--------~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~ 118 (390)
T PRK08064 49 SRSGNPTREALEDIIAELEGGTK-GFAFASGMAAISTAFL-LL--------SKGDHVLISEDVYGGTYRMITEVLSRFGI 118 (390)
T ss_pred cCCCChhHHHHHHHHHHHhCCCC-eEEECCHHHHHHHHHH-Hh--------CCCCEEEEccCccchHHHHHHHHHHHcCC
Confidence 33444678899999999999885 4556888765533332 21 579999999999875432 3456899
Q ss_pred EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCc
Q psy7357 105 SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGD 183 (302)
Q Consensus 105 ~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~ 183 (302)
+++.++.+ |+++++++++ ++|++|++++| |++|.+. |+++|.++||++|+++++|+++.... ...|.+
T Consensus 119 ~v~~v~~~-----d~~~l~~~l~---~~tklV~l~~p~NptG~~~-dl~~I~~la~~~g~~vvvD~a~~~~~--~~~~~~ 187 (390)
T PRK08064 119 EHTFVDMT-----NLEEVAQNIK---PNTKLFYVETPSNPLLKVT-DIRGVVKLAKAIGCLTFVDNTFLTPL--LQKPLD 187 (390)
T ss_pred EEEEECCC-----CHHHHHHhcC---CCceEEEEECCCCCCcEec-cHHHHHHHHHHcCCEEEEECCCCccc--ccCchh
Confidence 99999863 7999999998 78999999999 5899998 89999999999999999999864332 234667
Q ss_pred cCCcEEEeCCCcccCCCCCCCCCcceeEEEe-CCCCCCC
Q psy7357 184 YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVK-SHLAPFL 221 (302)
Q Consensus 184 ~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~l 221 (302)
+|+|+++.++||++++|. |...|+++++ +++.+++
T Consensus 188 ~g~Divv~S~tK~~~G~~---~~laG~~v~~~~~~~~~l 223 (390)
T PRK08064 188 LGADVVLHSATKFLAGHS---DVLAGLAVVKDEELAQKL 223 (390)
T ss_pred hCCcEEEeecceeccCCc---cceeEEEEeCCHHHHHHH
Confidence 899999999999998442 2235877776 4565554
No 97
>PRK05939 hypothetical protein; Provisional
Probab=99.74 E-value=8.3e-17 Score=153.34 Aligned_cols=157 Identities=15% Similarity=0.161 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH---HHHhCCCEEEEee
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA---SAQMAGMSVEPVS 110 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~---~~~~~g~~v~~i~ 110 (302)
....++++.++++.|.+.+ +...+|..|..+++.++. ++||+||++++.|+.+.. .+...|++++.++
T Consensus 47 p~~~~lE~~la~leg~~~~-v~~ssG~~Ai~~~l~all--------~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~~v~~v~ 117 (397)
T PRK05939 47 PTTAALEAKITKMEGGVGT-VCFATGMAAIAAVFLTLL--------RAGDHLVSSQFLFGNTNSLFGTLRGLGVEVTMVD 117 (397)
T ss_pred HHHHHHHHHHHHHhCCCeE-EEeCCHHHHHHHHHHHHc--------CCCCEEEECCCccccHHHHHHHHHhcCCEEEEEC
Confidence 5688999999999998875 456678776655555543 689999999999887654 3457899999998
Q ss_pred cCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcEE
Q psy7357 111 VRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDVS 189 (302)
Q Consensus 111 ~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDiv 189 (302)
. .|+++++++++ ++|++|++++| |++|.+. |+++|+++||++|+++++|+++... ...+|.++|+|++
T Consensus 118 ~-----~d~e~l~~~l~---~~tklV~vesp~NptG~v~-dl~~I~~la~~~gi~livD~t~a~~--~~~~~~~~gaDiv 186 (397)
T PRK05939 118 A-----TDVQNVAAAIR---PNTRMVFVETIANPGTQVA-DLAGIGALCRERGLLYVVDNTMTSP--WLFRPKDVGASLV 186 (397)
T ss_pred C-----CCHHHHHHhCC---CCCeEEEEECCCCCCCCHH-hHHHHHHHHHHcCCEEEEECCcccc--cccCccccCCEEE
Confidence 6 38999999998 88999999998 6899998 8999999999999999999986433 2346778899999
Q ss_pred EeCCCcccCCCCCCCCCcceeEEEe
Q psy7357 190 HLNLHKTFCIPHGGGGPGMGPIGVK 214 (302)
Q Consensus 190 ~~~~hK~l~~p~~~gGp~~G~l~~~ 214 (302)
+.+++|+|+.+ |..+|.+++.
T Consensus 187 v~S~sK~~~g~----g~~igg~v~~ 207 (397)
T PRK05939 187 INSLSKYIAGH----GNALGGAVTD 207 (397)
T ss_pred EecCeecccCC----CCeEEEEEec
Confidence 99999999853 4565665553
No 98
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=99.74 E-value=7.5e-18 Score=159.47 Aligned_cols=168 Identities=23% Similarity=0.281 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCC
Q psy7357 35 LIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKD 114 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~ 114 (302)
.+.|.|+.+++++|++.+.+..++++.++.++++++. ++||+||+++..|-+....+.+.|+++++++...+
T Consensus 67 ~I~eAe~~aA~~fGAd~t~flvnGsT~g~~a~i~a~~--------~~gd~VLv~RN~HkSv~~alil~ga~Pvyi~p~~~ 138 (417)
T PF01276_consen 67 IIKEAEELAARAFGADKTFFLVNGSTSGNQAMIMALC--------RPGDKVLVDRNCHKSVYNALILSGAIPVYIPPEDN 138 (417)
T ss_dssp HHHHHHHHHHHHHTESEEEEESSHHHHHHHHHHHHHT--------TTTCEEEEETT--HHHHHHHHHHTEEEEEEEEEE-
T ss_pred HHHHHHHHHHHhcCCCeEEEEecCchHHHHHHHHHhc--------CCCCEEEEcCCcHHHHHHHHHHcCCeEEEecCCcc
Confidence 5899999999999999987777766678888888776 78999999999998888888899999999987421
Q ss_pred -----CCCCH-----HHHHHHHhccCCCeEE---EEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCcccc--ccc-
Q psy7357 115 -----GTIDF-----SDLETKVKKNKETLSC---LMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQ--VGL- 178 (302)
Q Consensus 115 -----g~iD~-----~~l~~~i~~~~~~t~~---V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~--~~~- 178 (302)
+.+++ +.|+++|+++ ++.++ |++++|+++|++. |+++|+++||++|.+++||+|+.... ..+
T Consensus 139 ~~gi~~~i~~~~~~~~~i~~~l~~~-p~~k~~~~vvlt~PTY~Gv~~-di~~I~~~~h~~~~~llvDEAhGah~~F~~lp 216 (417)
T PF01276_consen 139 EYGIIGGISPDEFNEEDIEEALKEH-PDAKAPRLVVLTSPTYYGVCY-DIKEIAEICHKHGIPLLVDEAHGAHFGFHPLP 216 (417)
T ss_dssp TTS-BEEB-GGGGSHHHHHHHHHHC-TTCHCESEEEEESS-TTSEEE--HHHHHHHHCCTECEEEEE-TT-TTGGCSGGG
T ss_pred ccCCccCCChhhhhHHHHHHHHHhC-ccccCceEEEEeCCCCCeEEE-CHHHHHHHhcccCCEEEEEccccccccCCCCc
Confidence 24677 9999999987 44444 9999999999999 89999999999999999999974222 222
Q ss_pred CCCCccCCc-------EEEeCCCcccCCCCCCCCCcceeEEEeCCC
Q psy7357 179 CRPGDYGSD-------VSHLNLHKTFCIPHGGGGPGMGPIGVKSHL 217 (302)
Q Consensus 179 ~~p~~~gaD-------iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l 217 (302)
.+.-..|+| +++.|+||+++.- -+..+|-++.+.
T Consensus 217 ~~a~~~gad~~~~~~~~vvqS~HKtL~al-----tQts~lh~~~~~ 257 (417)
T PF01276_consen 217 RSALALGADRPNDPGIIVVQSTHKTLPAL-----TQTSMLHVKGDR 257 (417)
T ss_dssp TTCSSTTSS-CTSBEEEEEEEHHHHSSS------TT-EEEEEETCC
T ss_pred cchhhccCccccccceeeeechhhccccc-----ccceEEEecCCC
Confidence 234567899 9999999999832 267888888653
No 99
>PRK12414 putative aminotransferase; Provisional
Probab=99.74 E-value=3.5e-17 Score=155.22 Aligned_cols=184 Identities=12% Similarity=0.180 Sum_probs=135.8
Q ss_pred CCCCCCcccccHHHHHHHHHHHHHHHhCCCe---eeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH
Q psy7357 21 HPFIPQDQARGYEQLIGELETDLCEITGYDK---ISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP 96 (302)
Q Consensus 21 ~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~---~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~ 96 (302)
..|.| .+|..++++++++.+++++|++. .++..++|+ ++...++.++. ++||+|+++++.|..+.
T Consensus 60 ~~Y~~---~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~~~~~l~--------~~gd~Vlv~~p~y~~~~ 128 (384)
T PRK12414 60 NQYAP---MAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYAAISALV--------HPGDEVIYFEPSFDSYA 128 (384)
T ss_pred CCcCC---CCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHHHHHHhc--------CCCCEEEEeCCCccchH
Confidence 34554 68999999999999999999852 245555555 54433333332 68999999999998887
Q ss_pred HHHHhCCCEEEEeecCC-CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceec--cccHHHHHHHHHHhCCEEEEecCCc
Q psy7357 97 ASAQMAGMSVEPVSVRK-DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVF--EENITDVCELIHEHGGQVYLDGANM 172 (302)
Q Consensus 97 ~~~~~~g~~v~~i~~~~-~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~--~~di~~I~~ia~~~g~llivD~a~~ 172 (302)
..++..|.+++.+|.++ ++.+|+++|+++++ +++++|++++| |+||.+ ..++++|.++|+++|+++++|.++.
T Consensus 129 ~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~---~~~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~ 205 (384)
T PRK12414 129 PIVRLQGATPVAIKLSPEDFRVNWDEVAAAIT---PRTRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYE 205 (384)
T ss_pred HHHHHcCCEEEEEecCccccccCHHHHHhhcC---cccEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhh
Confidence 78888999999999875 45799999999997 68899999999 599986 2279999999999999999999863
Q ss_pred c-cccc--cCCCCc----cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 173 N-AQVG--LCRPGD----YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 173 ~-~~~~--~~~p~~----~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
. .... ..+... .+--|++.|.+|+|+.| |.|+|++.+++++++.+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~p----GlRiG~~v~~~~l~~~l~ 258 (384)
T PRK12414 206 HVVFDGARHHSMARHRELAERSVIVSSFGKSYHVT----GWRVGYCLAPAELMDEIR 258 (384)
T ss_pred hccCCCCCccCcccCcCccCcEEEEecccccccCc----cceEEEEecCHHHHHHHH
Confidence 1 1111 001111 11127777777777655 899999999987766553
No 100
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=99.74 E-value=8.5e-17 Score=152.95 Aligned_cols=165 Identities=20% Similarity=0.208 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH----HHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS----AQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~----~~~~g~~v~~i 109 (302)
....++++.++++.|.+.+.+ ..+|+.|..+++.++. +++|+|+++++.|+..... ....|++++.+
T Consensus 61 p~~~~Le~~lA~~~g~~~~i~-~~sG~~Ai~~~l~all--------~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~~ 131 (388)
T PRK07811 61 PTRTALEEQLAALEGGAYGRA-FSSGMAATDCLLRAVL--------RPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTPV 131 (388)
T ss_pred ccHHHHHHHHHHHhCCCceEE-eCCHHHHHHHHHHHHh--------CCCCEEEEcCCCchHHHHHHHHhCcCCCeEEEEe
Confidence 457899999999999987644 4677776655555543 6899999999988754332 22357888777
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
+. .|+++++++++ ++|++|++++| |++|.+. |+++|+++||++|+++++|+++... ....|...++|+
T Consensus 132 d~-----~d~e~l~~~i~---~~tklV~ie~p~NPtg~~~-dl~~I~~la~~~gi~lIvD~a~a~~--~~~~p~~~gaDi 200 (388)
T PRK07811 132 DL-----SDLDAVRAAIT---PRTKLIWVETPTNPLLSIT-DIAALAELAHDAGAKVVVDNTFASP--YLQQPLALGADV 200 (388)
T ss_pred CC-----CCHHHHHHhcC---cCCeEEEEECCCCCcceec-CHHHHHHHHHHcCCEEEEECCCCcc--ccCCchhhCCcE
Confidence 65 48999999998 78999999999 5899998 8999999999999999999986433 223566788999
Q ss_pred EEeCCCcccCCCCCCCCCcceeEEEe-CCCCCCC
Q psy7357 189 SHLNLHKTFCIPHGGGGPGMGPIGVK-SHLAPFL 221 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~l 221 (302)
++.|++|+|+.| |+-.+|+++++ +++.+++
T Consensus 201 vv~S~sK~l~g~---~~~~gG~vv~~~~~l~~~~ 231 (388)
T PRK07811 201 VVHSTTKYIGGH---SDVVGGALVTNDEELDEAF 231 (388)
T ss_pred EEecCceeecCC---CCcEEEEEEECCHHHHHHH
Confidence 999999999732 12236888886 4454443
No 101
>PRK06225 aspartate aminotransferase; Provisional
Probab=99.74 E-value=1.5e-16 Score=150.59 Aligned_cols=173 Identities=16% Similarity=0.161 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHhCCCeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCC-
Q psy7357 36 IGELETDLCEITGYDKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRK- 113 (302)
Q Consensus 36 ~~e~~~~l~~l~g~~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~- 113 (302)
..++++.+++++|++..++..++|+ ++...++.++. .++|+|+++++.|..+...++..|.+++.+|++.
T Consensus 68 ~~~lr~~ia~~l~~~~~~v~~~~g~t~al~~~~~~~~--------~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~ 139 (380)
T PRK06225 68 FPELRELILKDLGLDDDEALITAGATESLYLVMRAFL--------SPGDNAVTPDPGYLIIDNFASRFGAEVIEVPIYSE 139 (380)
T ss_pred hHHHHHHHHHhcCCCCCcEEEeCCHHHHHHHHHHHhc--------CCCCEEEEcCCCCcchHHHHHHhCceEEeeccccc
Confidence 5567788888899887666666665 44433333322 5789999999988777777888999999999742
Q ss_pred --CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcccccccCCCC--ccCC
Q psy7357 114 --DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMNAQVGLCRPG--DYGS 186 (302)
Q Consensus 114 --~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~--~~ga 186 (302)
++.+|++++++.++ +++++|++++| |++|.+. +++++|.++|+++|+++|+|+++.--........ ....
T Consensus 140 ~~~~~~d~~~l~~~~~---~~~~~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~ 216 (380)
T PRK06225 140 ECNYKLTPELVKENMD---ENTRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREHTLAAEYAPEH 216 (380)
T ss_pred cCCccCCHHHHHhhcC---CCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhccCCchhhcCCCC
Confidence 34799999999997 78899999999 5899862 2699999999999999999987520000000001 1123
Q ss_pred cEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 187 DVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 187 Div~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
.+++.+.+|+|+.| |.++|++++++++++.+..
T Consensus 217 ~i~~~s~SK~~g~~----G~RiG~i~~~~~l~~~~~~ 249 (380)
T PRK06225 217 TVTSYSFSKIFGMA----GLRIGAVVATPDLIEVVKS 249 (380)
T ss_pred EEEEeechhhcCCc----cceeEEEecCHHHHHHHHH
Confidence 46666777888644 7899999999887776543
No 102
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=99.74 E-value=6.4e-17 Score=154.57 Aligned_cols=167 Identities=19% Similarity=0.237 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEE--
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSV-- 106 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v-- 106 (302)
+...++++ + +++|++..++..++|+ .+...++.++ +. .+ .++++|++++.+|++... .++..|+++
T Consensus 71 ~~~~~~~~-~-~l~g~~~~~v~~~~~~t~~l~~~~~~~---~~-~~-~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~ 143 (406)
T TIGR01814 71 TLDESLLK-L-RLVGAKEDEVVVMNTLTINLHLLLASF---YK-PT-PKRYKILLEAKAFPSDHYAIESQLQLHGLTVEE 143 (406)
T ss_pred hhhhhhcc-c-cccCCCCCcEEEeCCchHHHHHHHHHh---cC-Cc-CCccEEEecCCCCChHHHHHHHHHHhcCCCccc
Confidence 34444444 4 7899876555544444 4432333332 11 11 123478888889988543 245678887
Q ss_pred --EEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCC-CceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCc
Q psy7357 107 --EPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPS-TFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGD 183 (302)
Q Consensus 107 --~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~ 183 (302)
+.++.+++|.+|++++++.++...++|++|++++++ .+|.+. |+++|+++||++|+++++|++|..+...+ +..+
T Consensus 144 ~~~~~~~~~~g~~~~~~l~~~~~~~~~~t~lv~~~~v~~~tG~~~-~~~~i~~~~~~~g~~~~vD~aq~~G~~~i-d~~~ 221 (406)
T TIGR01814 144 SMVQIEPREEETLRLEDILDTIEKNGDDIAVILLSGVQYYTGQLF-DMAAITRAAHAKGALVGFDLAHAVGNVPL-DLHD 221 (406)
T ss_pred ceEEeccCCCCccCHHHHHHHHHhcCCCeEEEEEeccccccceec-CHHHHHHHHHHcCCEEEEEcccccCCccc-cccc
Confidence 567766678899999999986544789999999875 789999 79999999999999999999997766553 4567
Q ss_pred cCCcEEEeCCCcccCCCCCCCCCcceeEEEeC
Q psy7357 184 YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKS 215 (302)
Q Consensus 184 ~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~ 215 (302)
+++|++++++||||+ |||| |.+++++
T Consensus 222 ~gvD~~~~s~hK~l~-----g~pG-~~l~v~~ 247 (406)
T TIGR01814 222 WGVDFACWCTYKYLN-----AGPG-AGAFVHE 247 (406)
T ss_pred CCCCEEEEcCccccC-----CCCC-eEEEEeh
Confidence 899999999999997 3566 5566544
No 103
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=99.74 E-value=1.1e-17 Score=155.20 Aligned_cols=172 Identities=19% Similarity=0.225 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH---HHHhCCCEEEEee
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA---SAQMAGMSVEPVS 110 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~---~~~~~g~~v~~i~ 110 (302)
....++++.+++++| +...+...+|++++..++.++. +++|+|+++++.|.++.. .+...|++++.+|
T Consensus 32 ~~~~~l~~~~a~~~g-~~~~~~~~~gt~a~~~~~~~l~--------~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~v~ 102 (338)
T cd06502 32 PTTAKLEARAAELFG-KEAALFVPSGTAANQLALAAHT--------QPGGSVICHETAHIYTDEAGAPEFLSGVKLLPVP 102 (338)
T ss_pred HHHHHHHHHHHHHhC-CCeEEEecCchHHHHHHHHHhc--------CCCCeEEEecCcceeeecCCcHHHHcCceEEeec
Confidence 457888999999999 5556667777766544444432 678999999999876432 3456899999999
Q ss_pred cCCCCCCCHHHHHHHHhcc----CCCeEEEEEecCCCceec---cccHHHHHHHHHHhCCEEEEecCCcccc---ccc-C
Q psy7357 111 VRKDGTIDFSDLETKVKKN----KETLSCLMITYPSTFGVF---EENITDVCELIHEHGGQVYLDGANMNAQ---VGL-C 179 (302)
Q Consensus 111 ~~~~g~iD~~~l~~~i~~~----~~~t~~V~i~~Pn~~G~~---~~di~~I~~ia~~~g~llivD~a~~~~~---~~~-~ 179 (302)
.+. +.+|+++|++++++. .+++++|++++||.+|.+ . |+++|.++|+++|+++++|+++.... .+. .
T Consensus 103 ~~~-~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~g~~~~~~-~l~~i~~~~~~~~~~livDea~~~~~~~~~~~~~ 180 (338)
T cd06502 103 GEN-GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEGGTVYPLD-ELKAISALAKENGLPLHLDGARLANAAAALGVAL 180 (338)
T ss_pred CCC-CcCCHHHHHHHhhccCCCcCCcceEEEEEeecCCccccCHH-HHHHHHHHHHHcCCeEeechHHHHHHHHhcCCCH
Confidence 854 779999999999742 137899999999754643 4 78999999999999999999863221 111 0
Q ss_pred CCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 180 RPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 180 ~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
.....++|+++.++||+|+.| ++++++.++++++++.
T Consensus 181 ~~~~~~~d~~~~s~sK~~~~~------~g~~~~~~~~~~~~~~ 217 (338)
T cd06502 181 KTYKSGVDSVSFCLSKGGGAP------VGAVVVGNRDFIARAR 217 (338)
T ss_pred HHHHhcCCEEEEeccccCCCc------cceEEECCHHHHHHHH
Confidence 111246899999999999754 4456666777766653
No 104
>PRK06108 aspartate aminotransferase; Provisional
Probab=99.74 E-value=3.5e-17 Score=154.63 Aligned_cols=179 Identities=16% Similarity=0.144 Sum_probs=132.8
Q ss_pred cccHHHHHHHHHHHHHHHhC--CCeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITG--YDKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g--~~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
++|..++++++.+.+.+.+| .+..++..++|+ ++...++.++. +++|+|+++++.|+.+...++..|++
T Consensus 60 ~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~--------~~gd~vl~~~p~y~~~~~~~~~~g~~ 131 (382)
T PRK06108 60 NLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQALV--------GPGDEVVAVTPLWPNLVAAPKILGAR 131 (382)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHHHHhc--------CCCCEEEEeCCCccchHHHHHHCCCE
Confidence 68999999999999998888 555566666665 44433333322 67899999999998888888899999
Q ss_pred EEEeecCCC---CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcccc-c-c
Q psy7357 106 VEPVSVRKD---GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMNAQ-V-G 177 (302)
Q Consensus 106 v~~i~~~~~---g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~~~-~-~ 177 (302)
++.+|.+.+ +.+|++++++.++ +++++|++++| |++|... +++++|.++|+++|+++|+|.++..-. . .
T Consensus 132 ~~~v~~~~~~~~~~~d~~~l~~~~~---~~~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~ 208 (382)
T PRK06108 132 VVCVPLDFGGGGWTLDLDRLLAAIT---PRTRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPG 208 (382)
T ss_pred EEEeeCCCCCCCccCCHHHHHHhcC---ccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCC
Confidence 999999742 3689999999987 68899999999 5899763 158999999999999999999863111 1 0
Q ss_pred cCCC------CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 178 LCRP------GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 178 ~~~p------~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
-..+ ....-.+++.+.+|+|+.| |.|+|++++++++++.+.
T Consensus 209 ~~~~~~~~~~~~~~~~i~~~S~SK~~g~~----G~RiG~~~~~~~~~~~~~ 255 (382)
T PRK06108 209 GRAPSFLDIAEPDDRIIFVNSFSKNWAMT----GWRLGWLVAPPALGQVLE 255 (382)
T ss_pred CCCCCHhhcCCCcCCEEEEeechhhccCc----ccceeeeeCCHHHHHHHH
Confidence 0001 0112247777888888654 789999999887766553
No 105
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=99.74 E-value=2e-16 Score=149.94 Aligned_cols=179 Identities=16% Similarity=0.142 Sum_probs=130.0
Q ss_pred cccHHHHHHHHHHHHHHHhCCC--ee-eEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYD--KI-SFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~--~~-~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~ 104 (302)
.+|..++++.+.+.+.+.+|.+ .. ++..++|++ +... +++.++ ++||.|+++++.|+.+...++..|.
T Consensus 68 ~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~i~~---~~~~~~-----~~gd~Vl~~~P~y~~~~~~~~~~g~ 139 (385)
T PRK09276 68 YEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEGIAH---IPLAFV-----NPGDVVLVPDPGYPVYKIGTIFAGG 139 (385)
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHH---HHHHhC-----CCCCEEEEcCCCCcChHHHHHHcCC
Confidence 5677788888888887776753 33 466767764 3322 222222 6899999999999888888889999
Q ss_pred EEEEeecCCC--CCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCCccc-ccc-
Q psy7357 105 SVEPVSVRKD--GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGANMNA-QVG- 177 (302)
Q Consensus 105 ~v~~i~~~~~--g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~~~~-~~~- 177 (302)
+++.+|.+.+ ..+|++++++.+. +++++|+++|| |+||.+.+ ++++|.++|+++|+++|+|.++..- ...
T Consensus 140 ~~~~v~~~~~~g~~~d~~~l~~~~~---~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~ 216 (385)
T PRK09276 140 EPYFMPLKEENGFLPDLDAIPEDVA---KKAKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGY 216 (385)
T ss_pred EEEEEecCCCCCCcCCHHHHHHhcc---ccceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCC
Confidence 9999998643 4589999999887 68899999999 59998742 3789999999999999999987311 111
Q ss_pred -cCCC----CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 178 -LCRP----GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 178 -~~~p----~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
..+. ...+..|++.+.+|.|+.| |.|+|++++++++++.+.
T Consensus 217 ~~~~~~~~~~~~~~~i~~~S~SK~~g~~----GlRiG~~i~~~~l~~~~~ 262 (385)
T PRK09276 217 KPPSFLEVPGAKDVGIEFHSLSKTYNMT----GWRIGFAVGNADLIAGLG 262 (385)
T ss_pred CCCChhccCCCcCCEEEEecchhhcCCc----chhheeeeCCHHHHHHHH
Confidence 1111 1122346777777877655 889999999887766553
No 106
>PLN00175 aminotransferase family protein; Provisional
Probab=99.74 E-value=4.2e-17 Score=156.26 Aligned_cols=183 Identities=20% Similarity=0.246 Sum_probs=136.4
Q ss_pred CCCCCCcccccHHHHHHHHHHHHHHHhCCC--ee-eEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH
Q psy7357 21 HPFIPQDQARGYEQLIGELETDLCEITGYD--KI-SFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP 96 (302)
Q Consensus 21 ~py~p~e~sqG~l~~~~e~~~~l~~l~g~~--~~-~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~ 96 (302)
+.|.+ .+|..++++.+.+.+.+..|.+ .. ++..++|+ +|...++.++. ++||+|+++++.|+.+.
T Consensus 85 ~~Y~~---~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~--------~~gd~Vlv~~P~y~~~~ 153 (413)
T PLN00175 85 NQYAR---GFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAATILGLI--------NPGDEVILFAPFYDSYE 153 (413)
T ss_pred CCcCC---CCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHHHHHHhC--------CCCCEEEEeCCCchhHH
Confidence 34555 6799999999999998888864 33 46667776 44433333332 68999999999998888
Q ss_pred HHHHhCCCEEEEeecCC-CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCc
Q psy7357 97 ASAQMAGMSVEPVSVRK-DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANM 172 (302)
Q Consensus 97 ~~~~~~g~~v~~i~~~~-~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~ 172 (302)
..++..|.+++.+++++ ++.+|+++|++.++ +++++|++++| |++|.+- +++++|.++|+++|+++|+|.++.
T Consensus 154 ~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~~~---~~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~ 230 (413)
T PLN00175 154 ATLSMAGAKIKTVTLRPPDFAVPEDELKAAFT---SKTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYD 230 (413)
T ss_pred HHHHHcCCEEEEEECCcccCCCCHHHHHHhcC---cCceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccC
Confidence 88889999999999974 46899999999997 78899999999 5899873 268899999999999999999863
Q ss_pred c-cccc----cCC-CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 173 N-AQVG----LCR-PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 173 ~-~~~~----~~~-p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
. .... +.. ++..+-.|++.+..|+|+.| |.|+|++++++++++.+
T Consensus 231 ~l~~~~~~~s~~~~~~~~~~vi~i~SfSK~~~~~----G~RiG~~v~~~~l~~~l 281 (413)
T PLN00175 231 KLAFEGDHISMASLPGMYERTVTMNSLGKTFSLT----GWKIGWAIAPPHLTWGV 281 (413)
T ss_pred ccccCCcccChhhCCCCcCcEEEEecchhhccCc----chheeeeEeCHHHHHHH
Confidence 1 1111 101 11122346677777877655 89999999998776655
No 107
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.74 E-value=1.5e-16 Score=152.99 Aligned_cols=156 Identities=17% Similarity=0.190 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEEEEee
Q psy7357 35 LIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSVEPVS 110 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~i~ 110 (302)
...++++.++++.|.+. .+...+|+.|+.+++.++. +++|+||++++.|+.... .+...|++++.++
T Consensus 64 ~~~~le~~lA~l~g~~~-al~~~SG~~Ai~~al~all--------~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd 134 (427)
T PRK05994 64 TNAVLEERVAALEGGTA-ALAVASGHAAQFLVFHTLL--------QPGDEFIAARKLYGGSINQFGHAFKSFGWQVRWAD 134 (427)
T ss_pred cHHHHHHHHHHHhCCCc-EEEEcCHHHHHHHHHHHHh--------CCCCEEEEecCcchhHHHHHHHHHHhcCcEEEEEC
Confidence 46789999999999887 4567888887766665553 689999999998876533 3567899999988
Q ss_pred cCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcEE
Q psy7357 111 VRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDVS 189 (302)
Q Consensus 111 ~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDiv 189 (302)
. .|+++++++++ ++|++|++++| |++|.+. |+++|+++||++|+++++|+++.... ...|-++|+|++
T Consensus 135 ~-----~d~~~l~~ai~---~~tklV~vesp~NptG~v~-dl~~I~~la~~~gi~livD~a~a~~~--~~~pl~~gaDiv 203 (427)
T PRK05994 135 A-----DDPASFERAIT---PRTKAIFIESIANPGGTVT-DIAAIAEVAHRAGLPLIVDNTLASPY--LIRPIEHGADIV 203 (427)
T ss_pred C-----CCHHHHHHhcC---cCCeEEEEECCCCCCCeec-CHHHHHHHHHHcCCEEEEECCccccc--cCCccccCCcEE
Confidence 5 38999999998 78999999998 6899998 89999999999999999999875433 346778999999
Q ss_pred EeCCCcccCCCCCCCCCcceeEEE
Q psy7357 190 HLNLHKTFCIPHGGGGPGMGPIGV 213 (302)
Q Consensus 190 ~~~~hK~l~~p~~~gGp~~G~l~~ 213 (302)
+.|+||+++.+ ||+-.|+++.
T Consensus 204 v~S~tK~lgg~---~~~~gG~v~~ 224 (427)
T PRK05994 204 VHSLTKFLGGH---GNSMGGIIVD 224 (427)
T ss_pred EEcCccccCCC---CCcEEEEEEe
Confidence 99999999854 3444565553
No 108
>PRK06767 methionine gamma-lyase; Provisional
Probab=99.74 E-value=5.7e-17 Score=154.05 Aligned_cols=163 Identities=15% Similarity=0.121 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH----HHhCCCEEEEee
Q psy7357 35 LIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS----AQMAGMSVEPVS 110 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~----~~~~g~~v~~i~ 110 (302)
...++++.+++++|.+. .+...+|+.|..+++.++. ++||+|+++++.|+.+... ....|+++..++
T Consensus 62 t~~~Le~~lA~l~G~~~-al~~~sG~~Ai~~~l~al~--------~~Gd~Vv~~~~~y~~~~~~~~~~~~~~gi~~~~~~ 132 (386)
T PRK06767 62 TVKLFEERMAVLEGGEE-ALAFGSGMAAISATLIGFL--------KAGDHIICSNGLYGCTYGFLEVLEEKFMITHSFCD 132 (386)
T ss_pred chHHHHHHHHHHhCCCc-EEEECCHHHHHHHHHHHHh--------CCCCEEEEcCCcHHHHHHHHHHHHhhcCeEEEEeC
Confidence 46889999999999875 4556778776645544443 6899999999988765443 234577776665
Q ss_pred cCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcEE
Q psy7357 111 VRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDVS 189 (302)
Q Consensus 111 ~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDiv 189 (302)
. .|+++++++++ ++|++|++++| |++|.+. |+++|.++||++|+++++|+++... ....|...|+|++
T Consensus 133 ~-----~d~~~l~~~i~---~~tklV~lesp~NptG~v~-dl~~I~~la~~~g~~vivD~a~a~~--~~~~pl~~g~Div 201 (386)
T PRK06767 133 M-----ETEADIENKIR---PNTKLIFVETPINPTMKLI-DLKQVIRVAKRNGLLVIVDNTFCSP--YLQRPLELGCDAV 201 (386)
T ss_pred C-----CCHHHHHHhhC---cCceEEEEeCCCCCCceec-CHHHHHHHHHHcCCEEEEECCCccc--ccCCchhcCCcEE
Confidence 4 48999999997 78999999999 5899998 8999999999999999999986432 2335667899999
Q ss_pred EeCCCcccCCCCCCCCCcceeEEEeCCCCCC
Q psy7357 190 HLNLHKTFCIPHGGGGPGMGPIGVKSHLAPF 220 (302)
Q Consensus 190 ~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~ 220 (302)
+.+++|+|+.+ |++.+|+++++++++.+
T Consensus 202 ~~S~sK~l~g~---g~~~gG~v~~~~~~i~~ 229 (386)
T PRK06767 202 VHSATKYIGGH---GDVVAGVTICKTRALAE 229 (386)
T ss_pred EecCcceecCC---CCceeEEEEeChHHHHH
Confidence 99999999743 22336999998776544
No 109
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=99.74 E-value=1.2e-16 Score=151.58 Aligned_cols=165 Identities=18% Similarity=0.187 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH----HHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS----AQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~----~~~~g~~v~~i 109 (302)
.-..++++.++++.|.+.+ +...+|..|..++++++. ++||+|+++++.|+..... ....|++++.+
T Consensus 53 pt~~~Le~~lA~leg~e~i-vvt~gg~~Ai~~~l~all--------~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi~v~~v 123 (388)
T PRK08861 53 PNRGLLEQTLSELESGKGA-VVTNCGTSALNLWVSALL--------GPDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFV 123 (388)
T ss_pred chHHHHHHHHHHHhCCCeE-EEECCHHHHHHHHHHHHc--------CCCCEEEEcCCchHHHHHHHHHHHhcCCeEEEEE
Confidence 4578899999999997654 344556666645555443 6899999999988754332 23457888887
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
+. .|+++++++++ ++|++|++++| |++|.+. |+++|+++|+++|+++++|+++.... ...|.++|+|+
T Consensus 124 d~-----~d~e~l~~~i~---~~tklV~lesP~NPtG~v~-dl~~I~~la~~~gi~vIvDea~~~~~--~~~pl~~GaDi 192 (388)
T PRK08861 124 DQ-----SDAAALDAALA---KKPKLILLETPSNPLVRVV-DIAELCQKAKAVGALVAVDNTFLTPV--LQKPLELGADF 192 (388)
T ss_pred CC-----CCHHHHHHhcC---cCCeEEEEECCCCCCCccc-CHHHHHHHHHHcCCEEEEECCccccc--cCCCcccCCCE
Confidence 63 58999999998 78999999999 5899999 89999999999999999999874333 34677889999
Q ss_pred EEeCCCcccCCCCCCCCCcceeEEEeC-CCCCCC
Q psy7357 189 SHLNLHKTFCIPHGGGGPGMGPIGVKS-HLAPFL 221 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~G~l~~~~-~l~~~l 221 (302)
++.|+||+++.|. +-..|++++++ ++.+++
T Consensus 193 vv~S~tK~l~G~~---d~~gG~i~~~~~~~~~~~ 223 (388)
T PRK08861 193 VIHSTTKYINGHS---DVIGGVLITKTKEHAEEL 223 (388)
T ss_pred EEeecceeccCCC---cceeEEEEecHHHHHHHH
Confidence 9999999998431 22368887763 444433
No 110
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=99.73 E-value=2.4e-16 Score=147.80 Aligned_cols=172 Identities=20% Similarity=0.265 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHhC-CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCC
Q psy7357 36 IGELETDLCEITG-YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKD 114 (302)
Q Consensus 36 ~~e~~~~l~~l~g-~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~ 114 (302)
..++++.+++.+| .+..++..+.|+...+.. .++.+. .+||.|+++.+.|+.|..+++..|.+++.+|.++
T Consensus 59 ~~~l~~a~a~~~~~~~~~~V~~gnGsde~i~~--l~~~~~-----~~gd~vl~~~Ptf~~Y~~~a~~~g~~~~~v~~~~- 130 (356)
T COG0079 59 YRELRAALAEYYGVVDPENVLVGNGSDELIEL--LVRAFV-----EPGDTVLIPEPTFSMYEIAAQLAGAEVVKVPLKE- 130 (356)
T ss_pred HHHHHHHHHHHhCCCCcceEEEcCChHHHHHH--HHHHhh-----cCCCEEEEcCCChHHHHHHHHhcCCeEEEecccc-
Confidence 3577888999999 777788888998643222 223332 6789999999999999999999999999999977
Q ss_pred CCCCHHHHHHHHhccCCCeEEEEEecCC-CceeccccHHHHHHHHHHh--CCEEEEecCCccccccc--CCCCccCCcEE
Q psy7357 115 GTIDFSDLETKVKKNKETLSCLMITYPS-TFGVFEENITDVCELIHEH--GGQVYLDGANMNAQVGL--CRPGDYGSDVS 189 (302)
Q Consensus 115 g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~--g~llivD~a~~~~~~~~--~~p~~~gaDiv 189 (302)
...|++.+.+.++ +++++|+++||| |||... +.++|.+++... ++++++|+|+. -+..- .......-+++
T Consensus 131 ~~~d~~~~~~~~~---~~~~lv~i~nPNNPTG~~~-~~~~l~~l~~~~~~~~~vVvDEAY~-eF~~~~~~~l~~~~~nli 205 (356)
T COG0079 131 FRLDLDAILAAIR---DKTKLVFLCNPNNPTGTLL-PREELRALLEALPEGGLVVIDEAYI-EFSPESSLELLKYPPNLI 205 (356)
T ss_pred cccCHHHHHHhhh---cCCCEEEEeCCCCCCCCCC-CHHHHHHHHHhCCCCcEEEEeCchh-hcCCchhhhhccCCCCEE
Confidence 8899999999998 688999999995 999886 466666666543 78999999863 11110 01111233577
Q ss_pred EeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 190 HLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 190 ~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
+. +||++.+|+.|-|+||.+.++++++.+..
T Consensus 206 vl---RTfSKa~gLAGlRlGy~ia~~~~i~~l~~ 236 (356)
T COG0079 206 VL---RTFSKAFGLAGLRVGYAIANPELIAALNK 236 (356)
T ss_pred EE---EecHHhhhcchhceeeccCCHHHHHHHHH
Confidence 76 68888888999999999999888776643
No 111
>PRK09105 putative aminotransferase; Provisional
Probab=99.73 E-value=1.5e-16 Score=150.29 Aligned_cols=168 Identities=17% Similarity=0.177 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHhCCCeeeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCC
Q psy7357 36 IGELETDLCEITGYDKISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKD 114 (302)
Q Consensus 36 ~~e~~~~l~~l~g~~~~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~ 114 (302)
..++++.+++.+|++..++..++|++ +. .+++..+. +++|+|++++|.|+.+...++..|.+++.+|.+++
T Consensus 80 ~~~Lr~aia~~~~v~~e~I~it~Gs~~ai---~~~~~~l~-----~~gd~Vli~~P~y~~~~~~~~~~g~~~~~v~~~~~ 151 (370)
T PRK09105 80 EDDLRTLFAAQEGLPADHVMAYAGSSEPL---NYAVLAFT-----SPTAGLVTADPTYEAGWRAADAQGAPVAKVPLRAD 151 (370)
T ss_pred HHHHHHHHHHHhCcChhhEEEcCChHHHH---HHHHHHHc-----CCCCEEEEeCCChHHHHHHHHHcCCeEEEecCCCC
Confidence 56788889999999888888887874 33 23333332 67899999999998888888999999999999877
Q ss_pred CCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHH--hCCEEEEecCCcccccccCCCC---ccCCcE
Q psy7357 115 GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHE--HGGQVYLDGANMNAQVGLCRPG---DYGSDV 188 (302)
Q Consensus 115 g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~--~g~llivD~a~~~~~~~~~~p~---~~gaDi 188 (302)
+.+|++++++. . +++++|+++|| |++|.+. +.+++.++++. +++++|+|+++. .+....+.. +...++
T Consensus 152 ~~~d~~~l~~~-~---~~~~~v~l~nP~NPTG~~~-~~~~l~~l~~~~~~~~~lIvDEaY~-~f~~~~s~~~~~~~~~~v 225 (370)
T PRK09105 152 GAHDVKAMLAA-D---PNAGLIYICNPNNPTGTVT-PRADIEWLLANKPAGSVLLVDEAYI-HFSDAPSVVDLVAQRKDL 225 (370)
T ss_pred CCCCHHHHHhc-C---CCCCEEEEeCCCCCCCcCc-CHHHHHHHHHhCCCCcEEEEECchH-HhccCcchHHHHhhCCCE
Confidence 88999999876 3 56888999999 5999987 57777777653 489999999872 111111111 123465
Q ss_pred EEe-CCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 189 SHL-NLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 189 v~~-~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
++. +.+|+|+. .|.|+|++++++++++.+
T Consensus 226 i~~~SfSK~~g~----~GlRiG~~v~~~~~i~~l 255 (370)
T PRK09105 226 IVLRTFSKLYGM----AGMRLGLAAARPDLLAKL 255 (370)
T ss_pred EEEecccHhhcC----CccceeeeecCHHHHHHH
Confidence 555 45566654 489999999988766654
No 112
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=99.73 E-value=7.3e-17 Score=155.58 Aligned_cols=170 Identities=21% Similarity=0.227 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCccc------HHHHHhCCCEEE
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTN------PASAQMAGMSVE 107 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~------~~~~~~~g~~v~ 107 (302)
+...++++.+++++|.+.+.+ +++|+.|+..++.+ + .++|+|++++..|..+ +...+..|++++
T Consensus 122 ~r~~~le~~lA~l~gae~alv-v~sg~aAi~l~l~~---l------~~GdeVIvs~~e~v~~ggs~~i~~~~~~~G~~~~ 191 (454)
T TIGR00474 122 SRYSHVEGLLCELTGAEDALV-VNNNAAAVLLALNT---L------AKGKEVIVSRGELVEIGGSFRIPDVMEQSGAKLV 191 (454)
T ss_pred hHHHHHHHHHHHHhCCCcEEE-ECCHHHHHHHHHHH---h------CCcCEEEECCChhhhhcchhhHHHHHHHcCCEEE
Confidence 346889999999999987644 66787665333322 2 5789999998775322 234567899999
Q ss_pred EeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCC-C--cee--ccccHHHHHHHHHHhCCEEEEecCCcc-------cc
Q psy7357 108 PVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPS-T--FGV--FEENITDVCELIHEHGGQVYLDGANMN-------AQ 175 (302)
Q Consensus 108 ~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~--~G~--~~~di~~I~~ia~~~g~llivD~a~~~-------~~ 175 (302)
+++.+ ...|+++++++++ ++|++|++.+++ + .|. +. |+++|+++||++|+++++|.+.-. +.
T Consensus 192 ~v~~~--~~~~l~dle~aI~---~~T~lv~~~h~sN~~~~G~~~~~-dl~~I~~la~~~g~~vivD~~sG~l~~~~~~gl 265 (454)
T TIGR00474 192 EVGTT--NRTHLKDYEDAIT---ENTALLLKVHTSNYRIVGFTEEV-SIAELVALGREHGLPVMEDLGSGSLVDLSRYGL 265 (454)
T ss_pred EeCCC--CCCCHHHHHHhcC---cCCEEEEEEccCcccccCCCCCC-CHHHHHHHHHHcCCeEEEECCCcccccchhccC
Confidence 98763 4578999999998 889999998874 3 353 55 899999999999999999964210 00
Q ss_pred cc---cCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCc
Q psy7357 176 VG---LCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHP 225 (302)
Q Consensus 176 ~~---~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~ 225 (302)
.. +..+.++|+|++++|+||+|+ ||..|++++++++++++....
T Consensus 266 ~~~p~~~~~~~~GaDiv~fSg~K~Lg------Gp~~G~i~g~~~~i~~l~~~~ 312 (454)
T TIGR00474 266 PDEPTVQEVIAAGVDLVTFSGDKLLG------GPQAGIIVGKKELIERLKKNP 312 (454)
T ss_pred CCCcccccHhHcCCCEEEecCccccC------CCeEEEEEECHHHHHhhhhch
Confidence 00 124557899999999999986 678899999988877765443
No 113
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=99.73 E-value=1.4e-16 Score=151.13 Aligned_cols=164 Identities=17% Similarity=0.157 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~i 109 (302)
....+++++++++.|.+.+ +..+||+.|..+++ ++. ++||+|+++++.|+.... .+...|++++.+
T Consensus 50 p~~~~Le~~la~l~g~~~a-l~~~SG~~Al~~~l-~~l--------~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~v~~v 119 (380)
T PRK06176 50 PTRFALEELIADLEGGVKG-FAFASGLAGIHAVF-SLF--------QSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCTII 119 (380)
T ss_pred hhHHHHHHHHHHHhCCCCE-EEECCHHHHHHHHH-HHc--------CCCCEEEEcCCChhHHHHHHHHHHHhcCeEEEEc
Confidence 5588999999999998876 55688887663322 222 689999999998765432 345678898888
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
+. .|+++++++++ ++|++|++++| |++|.+. |+++|+++||++|+++++|+++... ....|..+++|+
T Consensus 120 d~-----~d~e~l~~ai~---~~t~lV~lesP~Nptg~~~-di~~I~~la~~~gi~vivD~t~a~~--~~~~p~~~gaDi 188 (380)
T PRK06176 120 DT-----SDLSQIKKAIK---PNTKALYLETPSNPLLKIT-DLAQCASVAKDHGLLTIVDNTFATP--YYQNPLLLGADI 188 (380)
T ss_pred CC-----CCHHHHHHhcC---cCceEEEEECCCCCCceec-CHHHHHHHHHHcCCEEEEECCcccc--ccCCccccCCCE
Confidence 75 38999999998 78999999999 5899998 8999999999999999999886432 234567889999
Q ss_pred EEeCCCcccCCCCCCCCCcceeEEEe-CCCCCCC
Q psy7357 189 SHLNLHKTFCIPHGGGGPGMGPIGVK-SHLAPFL 221 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~l 221 (302)
++.|++|+++.| +..-.|+++++ +++.+++
T Consensus 189 vv~S~tK~l~g~---~d~~gG~vv~~~~~~~~~~ 219 (380)
T PRK06176 189 VVHSGTKYLGGH---SDVVAGLVTTNNEALAQEI 219 (380)
T ss_pred EEecCceeccCC---ccceeeEEEecHHHHHHHH
Confidence 999999999844 11236878876 3444443
No 114
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=99.73 E-value=2.9e-16 Score=147.99 Aligned_cols=244 Identities=17% Similarity=0.168 Sum_probs=158.2
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecC-
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVR- 112 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~- 112 (302)
..+.++++.+++.+|.+.+ +.++||+.|..+++.++. .++||+|++|...+..........|+++++++++
T Consensus 25 ~~~~~fE~~~a~~~g~~~~-~~~~sgt~Al~~al~~l~-------~~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di~~ 96 (363)
T PF01041_consen 25 PYVEEFEKEFAEYFGVKYA-VAVSSGTSALHLALRALG-------LGPGDEVIVPAYTFPATASAILWAGAEPVFVDIDP 96 (363)
T ss_dssp HHHHHHHHHHHHHHTSSEE-EEESSHHHHHHHHHHHTT-------GGTTSEEEEESSS-THHHHHHHHTT-EEEEE-BET
T ss_pred HHHHHHHHHHHHHhCCCeE-EEeCChhHHHHHHHHhcC-------CCcCceEecCCCcchHHHHHHHHhccEEEEEeccC
Confidence 5789999999999998886 456889887766666532 2589999999998887778888999999999998
Q ss_pred CCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCccccccc-CCCCccCCcEEEe
Q psy7357 113 KDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGL-CRPGDYGSDVSHL 191 (302)
Q Consensus 113 ~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~-~~p~~~gaDiv~~ 191 (302)
+++.+|+++++++++ ++|++|++++ .+|... |+++|.++|+++|+++|-|++|..+.-.- ...|.+| |+.++
T Consensus 97 ~~~~id~~~~~~~i~---~~t~ai~~~h--~~G~~~-d~~~i~~~~~~~~i~lIeD~a~a~g~~~~g~~~G~~g-d~~~f 169 (363)
T PF01041_consen 97 ETLNIDPEALEKAIT---PKTKAILVVH--LFGNPA-DMDAIRAIARKHGIPLIEDAAQAFGARYKGRPVGSFG-DIAIF 169 (363)
T ss_dssp TTSSB-HHHHHHHHH---TTEEEEEEE---GGGB----HHHHHHHHHHTT-EEEEE-TTTTT-EETTEETTSSS-SEEEE
T ss_pred CcCCcCHHHHHHHhc---cCccEEEEec--CCCCcc-cHHHHHHHHHHcCCcEEEccccccCceeCCEeccCCC-CceEe
Confidence 478999999999999 8999999987 678888 89999999999999999999986543211 3457776 99999
Q ss_pred CCC--cccCCCCCCCCCcceeEEEeC-CCCCCC---C--CCc-------cc----CCCCcchhhhHHHHhhHh------h
Q psy7357 192 NLH--KTFCIPHGGGGPGMGPIGVKS-HLAPFL---P--VHP-------LS----SIDSSIGAVSAAHYGSAS------I 246 (302)
Q Consensus 192 ~~h--K~l~~p~~~gGp~~G~l~~~~-~l~~~l---p--g~~-------~~----~~~~~l~~~~a~~~~~~~------~ 246 (302)
|+| |.+. ...+|++++++ ++.+++ . |+- .. ..|.-+..+.|++-..-+ +
T Consensus 170 Sf~~~K~i~------~geGG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n~rm~~~~AAigl~QL~~L~~~~ 243 (363)
T PF01041_consen 170 SFHPTKIIT------TGEGGAVVTNDPELAERARALRNHGRSRDAFRRYRHELPPGYNFRMSELQAAIGLAQLKRLDEII 243 (363)
T ss_dssp ESSTTSSS-------SSS-EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSSS--B-B-BHHHHHHHHHHHHTHHHHH
T ss_pred cCCCCCCCc------CCCCeeEEecHHHHHHHhhhhhccCcCccccccccccccCCcccccHHHHHHHHHHHHHHhhhhH
Confidence 976 4442 22458999985 433333 1 111 00 134556666665555432 1
Q ss_pred HH---HHHHHHHHHh--cccccccccCCCc-ceeEEEEEEeccccccCCCCHHHHHHHhhc
Q psy7357 247 LP---ISWAYIRRLE--SHYKTLFRSSRSG-LVAHEFVIDVRDFKKSANIEAVDIAKRLMD 301 (302)
Q Consensus 247 ~~---~~~~y~~~l~--~g~~~~~~~~~~~-~~~he~~~~~~~~~~~~g~~~~~~~~~l~~ 301 (302)
.. .+..|.+.|. +++..+...+... ...|.|.+.+++.. ..+-+++.++|.+
T Consensus 244 ~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~---~~~rd~l~~~L~~ 301 (363)
T PF01041_consen 244 ARRRENAQRYREALAGIPGIKPPPIPDGAERSSYYRFPIRLPDEA---LADRDELVEALRA 301 (363)
T ss_dssp HHHHHHHHHHHHHHTTGTTEEEEGCGTTTEEBCESSEEEEETCCG---CSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCcccccccccccccccccccccccccc---cchHHHHHHHHHH
Confidence 11 1113444665 4554433222201 35788888888421 1356778777753
No 115
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.73 E-value=1.7e-16 Score=152.63 Aligned_cols=147 Identities=18% Similarity=0.181 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~i 109 (302)
....++++.++++.|.+.+ +..++|+.|..+++.++. ++||+|+++++.|+.... .++..|++++.+
T Consensus 64 p~~~~Le~~lA~leg~~~a-l~~~sG~~Ai~~al~~ll--------~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~v 134 (431)
T PRK08248 64 PTTDVFEKRIAALEGGIGA-LAVSSGQAAITYSILNIA--------SAGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFV 134 (431)
T ss_pred chHHHHHHHHHHHhCCCcE-EEECCHHHHHHHHHHHHh--------CCCCEEEEccCchhhHHHHHHHHHHhCCEEEEEE
Confidence 3577899999999997764 456788877655555543 689999999998865432 356789999999
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
+. .|+++++++++ +++++|++++| |++|.+. |+++|+++||++|+++++|+++... ....|.++|+|+
T Consensus 135 d~-----~d~e~l~~ai~---~~tklV~l~sp~NPtG~v~-di~~I~~la~~~gi~vIvD~t~a~~--~~~~pl~~gaDi 203 (431)
T PRK08248 135 DP-----SDPENFEAAIT---DKTKALFAETIGNPKGDVL-DIEAVAAIAHEHGIPLIVDNTFASP--YLLRPIEHGADI 203 (431)
T ss_pred CC-----CCHHHHHHhcC---CCCeEEEEECCCCCCCccc-CHHHHHHHHHHcCCEEEEeCCCCcc--ccCChhHcCCCE
Confidence 86 38999999998 78999999998 6999999 8999999999999999999986422 234566899999
Q ss_pred EEeCCCcccCCC
Q psy7357 189 SHLNLHKTFCIP 200 (302)
Q Consensus 189 v~~~~hK~l~~p 200 (302)
++.++||+++.|
T Consensus 204 vv~S~tK~lgg~ 215 (431)
T PRK08248 204 VVHSATKFIGGH 215 (431)
T ss_pred EEEcCccccCCC
Confidence 999999999844
No 116
>PRK05942 aspartate aminotransferase; Provisional
Probab=99.73 E-value=6.1e-17 Score=154.05 Aligned_cols=184 Identities=18% Similarity=0.211 Sum_probs=132.9
Q ss_pred CCCCCCcccccHHHHHHHHHHHHHHHhCCC--ee-eEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH
Q psy7357 21 HPFIPQDQARGYEQLIGELETDLCEITGYD--KI-SFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP 96 (302)
Q Consensus 21 ~py~p~e~sqG~l~~~~e~~~~l~~l~g~~--~~-~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~ 96 (302)
..|.+ .+|..++++++.+.+.+.+|.+ .. .+..++|+ ++...++.++ + +++|+|++++|.|+.+.
T Consensus 67 ~~Y~~---~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~al~~~~~~~---~-----~~gd~Vlv~~P~y~~~~ 135 (394)
T PRK05942 67 HGYPP---FEGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKEGLTHLALAY---V-----NPGDVVLVPSPAYPAHF 135 (394)
T ss_pred ccCCC---CCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHHHHHHHHHh---C-----CCCCEEEEcCCCCcchH
Confidence 34544 5788888888888888777753 33 36666676 4442332222 2 68999999999998887
Q ss_pred HHHHhCCCEEEEeecCCC--CCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCC
Q psy7357 97 ASAQMAGMSVEPVSVRKD--GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGAN 171 (302)
Q Consensus 97 ~~~~~~g~~v~~i~~~~~--g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~ 171 (302)
..+...|.+++.+|++.+ +.+|++++++.++ +++++|+++|| |+||.+.+ ++++|.++|+++|+++|+|.++
T Consensus 136 ~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~---~~~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y 212 (394)
T PRK05942 136 RGPLIAGAQIYPIILKPENDWLIDLSSIPEEVA---QQAKILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCY 212 (394)
T ss_pred HHHHHcCCEEEEeecCCccCCccCHHHHHHhcc---ccceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccc
Confidence 777889999999999753 3699999999997 78999999999 59998741 4889999999999999999986
Q ss_pred cccc-c-----ccCC-CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 172 MNAQ-V-----GLCR-PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 172 ~~~~-~-----~~~~-p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
..-. . .+.. +......|.+.+..|.|+.| |.|+|++++++++++.+.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~----GlRiG~i~~~~~l~~~l~ 266 (394)
T PRK05942 213 AELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMA----GWRVGFVVGNRHIIQGLR 266 (394)
T ss_pred hhhccCCCCCCChhhCCCccccEEEEecchhccCCh----hhheeeeecCHHHHHHHH
Confidence 3111 0 1100 11112346667777777644 889999999887776654
No 117
>PRK05764 aspartate aminotransferase; Provisional
Probab=99.73 E-value=8.3e-16 Score=145.93 Aligned_cols=179 Identities=18% Similarity=0.246 Sum_probs=132.3
Q ss_pred cccHHHHHHHHHHHHHHHhCC--CeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITGY--DKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~--~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
.+|..+++.++.+.+.+..|. +..++..++|+ ++...++.++. +++|.|+++++.|+.+...++..|.+
T Consensus 67 ~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~--------~~gd~vl~~~p~y~~~~~~~~~~g~~ 138 (393)
T PRK05764 67 AAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMALL--------DPGDEVIIPAPYWVSYPEMVKLAGGV 138 (393)
T ss_pred CCChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHHHHHHHhc--------CCCCEEEecCCCCcchHHHHHHcCCE
Confidence 468777777777777766664 33455556665 55534433332 57899999999998888888889999
Q ss_pred EEEeecCCC--CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCccc-ccc--
Q psy7357 106 VEPVSVRKD--GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMNA-QVG-- 177 (302)
Q Consensus 106 v~~i~~~~~--g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~~-~~~-- 177 (302)
++.+|.+++ ..+|++++++.++ +++++|++++| |++|.+. +++++|.++|+++|+++++|.++... ..+
T Consensus 139 ~~~~~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~ 215 (393)
T PRK05764 139 PVFVPTGEENGFKLTVEQLEAAIT---PKTKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAE 215 (393)
T ss_pred EEEEecCcccCCcCCHHHHHHhhC---ccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCC
Confidence 999999743 4689999999997 78899999999 5899873 26999999999999999999876311 111
Q ss_pred ---cC--CCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 178 ---LC--RPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 178 ---~~--~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
.. .++..+.++++.+.+|+++.| |.++|+++.++++.+.+.
T Consensus 216 ~~~~~~~~~~~~~~~i~~~s~SK~~~~~----G~RiG~i~~~~~~~~~~~ 261 (393)
T PRK05764 216 FTSIASLSPELRDRTITVNGFSKAYAMT----GWRLGYAAGPKELIKAMS 261 (393)
T ss_pred cccHHHcCCCCcCCEEEEecCcccccCc----cceeEEEecCHHHHHHHH
Confidence 00 022234568888888888755 789999999887776654
No 118
>PLN02721 threonine aldolase
Probab=99.73 E-value=4.5e-16 Score=145.19 Aligned_cols=170 Identities=18% Similarity=0.203 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCC-CCCEEEEcCCCCcccHH---HHHhCCCEEEEee
Q psy7357 35 LIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAH-HRNVCLIPVSAHGTNPA---SAQMAGMSVEPVS 110 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~-~~d~Vlv~~~~hg~~~~---~~~~~g~~v~~i~ 110 (302)
...++++.+++++|.+.. +...+|+.++.+++.++. . +||+|+++++.|..... .+...|.+++.+|
T Consensus 41 ~~~~l~~~la~~~~~~~~-~~~~~Gs~a~~~~l~~~~--------~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~ 111 (353)
T PLN02721 41 TALRLEEEMAKIFGKEAA-LFVPSGTMGNLISVLVHC--------DVRGSEVILGDNSHIHLYENGGISTLGGVHPRTVK 111 (353)
T ss_pred HHHHHHHHHHHHhCCcee-EEecCccHHHHHHHHHHc--------cCCCCeEEEcCccceehhcccchhhhcCceeEecC
Confidence 368899999999998864 455677766544444432 4 78999999998743332 4667899999999
Q ss_pred cCCCCCCCHHHHHHHHhcc----CCCeEEEEEecC-C-Cceeccc--cHHHHHHHHHHhCCEEEEecCCcccc---cccC
Q psy7357 111 VRKDGTIDFSDLETKVKKN----KETLSCLMITYP-S-TFGVFEE--NITDVCELIHEHGGQVYLDGANMNAQ---VGLC 179 (302)
Q Consensus 111 ~~~~g~iD~~~l~~~i~~~----~~~t~~V~i~~P-n-~~G~~~~--di~~I~~ia~~~g~llivD~a~~~~~---~~~~ 179 (302)
.++++.+|++++++.++++ .+++++|+++++ | ++|.+.+ ++++|.++|+++|+++++|+++.... ...
T Consensus 112 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~- 190 (353)
T PLN02721 112 NNEDGTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGV- 190 (353)
T ss_pred CCcCCCcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCC-
Confidence 8888899999999999742 147889999884 3 6787641 48999999999999999999864321 111
Q ss_pred CCC--ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCC
Q psy7357 180 RPG--DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPF 220 (302)
Q Consensus 180 ~p~--~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~ 220 (302)
++. ..++|.++.++||+|+ ||.+|+++.++++++.
T Consensus 191 ~~~~~~~~~d~~~~s~sK~l~------~~~G~~~~~~~~~~~~ 227 (353)
T PLN02721 191 PVHRLVKAADSVSVCLSKGLG------APVGSVIVGSKSFIRK 227 (353)
T ss_pred CHHHHhhhCCEEEEecccccC------CceeeEEecCHHHHHh
Confidence 222 2368988888999886 3433456667766554
No 119
>PLN02242 methionine gamma-lyase
Probab=99.73 E-value=5e-17 Score=155.82 Aligned_cols=166 Identities=14% Similarity=0.170 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHH-----HhCCCEE
Q psy7357 32 YEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASA-----QMAGMSV 106 (302)
Q Consensus 32 ~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~-----~~~g~~v 106 (302)
......++++++++++|.+.+. ...+|..|+.+++.++. ++||+|+++++.|+.+.... +..|.++
T Consensus 74 ~~Pt~~~LE~~lA~l~g~~~~l-~~~sG~~Ai~~al~al~--------~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~ 144 (418)
T PLN02242 74 FNPTVLNLGRQMAALEGTEAAY-CTASGMSAISSVLLQLC--------SSGGHVVASNTLYGGTHALLAHFLPRKCNITT 144 (418)
T ss_pred CChhHHHHHHHHHHHhCCCeEE-EEccHHHHHHHHHHHHh--------CCCCEEEEcCCcHHHHHHHHHHhhhhccCceE
Confidence 3467889999999999998875 45678777756655554 68999999999887665433 3478888
Q ss_pred EEeecCCCCCCCHHHHHHHHhccCC-CeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCcc
Q psy7357 107 EPVSVRKDGTIDFSDLETKVKKNKE-TLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDY 184 (302)
Q Consensus 107 ~~i~~~~~g~iD~~~l~~~i~~~~~-~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~ 184 (302)
+.++. .|+++++++++ + ++++|++++| |++|.+. |+++|+++||++|+++++|.++. .. ..+|..+
T Consensus 145 ~~~d~-----~d~e~l~~~i~---~~~tklV~lesp~NPtG~v~-dl~~I~~la~~~gi~livDea~~--~~-~~~~~~~ 212 (418)
T PLN02242 145 TFVDI-----TDLEAVKKAVV---PGKTKVLYFESISNPTLTVA-DIPELARIAHEKGVTVVVDNTFA--PM-VLSPARL 212 (418)
T ss_pred EEcCC-----CCHHHHHHhcC---cCCCEEEEEecCCCCCCccc-CHHHHHHHHHHhCCEEEEECCCC--cc-CCCHHHc
Confidence 77765 38999999997 6 5999999999 6899998 89999999999999999998863 22 2356667
Q ss_pred CCcEEEeCCCcccCCCCCCCCCc-ceeEEEeCCCCCCCC
Q psy7357 185 GSDVSHLNLHKTFCIPHGGGGPG-MGPIGVKSHLAPFLP 222 (302)
Q Consensus 185 gaDiv~~~~hK~l~~p~~~gGp~-~G~l~~~~~l~~~lp 222 (302)
|+||++.+++|+|+.+ |.. +|++++++++++.+.
T Consensus 213 g~divv~S~SK~l~g~----g~~~gG~iv~~~~li~~l~ 247 (418)
T PLN02242 213 GADVVVHSISKFISGG----ADIIAGAVCGPAELVNSMM 247 (418)
T ss_pred CCcEEEEeCccccCCC----CCceEEEEEcCHHHHHHHH
Confidence 8999999999988743 443 699998877665543
No 120
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=99.73 E-value=4.3e-17 Score=151.73 Aligned_cols=171 Identities=19% Similarity=0.207 Sum_probs=130.5
Q ss_pred cccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEE
Q psy7357 29 ARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEP 108 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~ 108 (302)
..|.....+++++.+++++|++. .+.+++|++++.+++.++. ++||+|+++++.|+.....++..|.+++.
T Consensus 41 ~~~~~~~~~~l~~~la~~~~~~~-~iv~~sg~~a~~~~~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~ 111 (349)
T cd06454 41 ISGTSDLHEELEEELAEFHGKEA-ALVFSSGYAANDGVLSTLA--------GKGDLIISDSLNHASIIDGIRLSGAKKRI 111 (349)
T ss_pred ecCCchHHHHHHHHHHHHhCCCC-EEEeccHHHHHHHHHHHhc--------CCCCEEEEehhhhHHHHHHHHHcCCceEE
Confidence 45777888999999999999875 4667778776655554443 57899999999988777677788999988
Q ss_pred eecCCCCCCCHHHHHHHHhccC--CCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCccccccc-------
Q psy7357 109 VSVRKDGTIDFSDLETKVKKNK--ETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGL------- 178 (302)
Q Consensus 109 i~~~~~g~iD~~~l~~~i~~~~--~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~------- 178 (302)
++. +|++++++++++.. +++++|++++| |++|.+. |+++|+++|+++|+++|+|+++..+....
T Consensus 112 ~~~-----~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~-~~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~ 185 (349)
T cd06454 112 FKH-----NDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIA-PLPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEE 185 (349)
T ss_pred ecC-----CCHHHHHHHHHHhhccCCCeEEEEeccccCCCCcc-CHHHHHHHHHHcCCEEEEEccccccccCCCCCChhh
Confidence 763 58899999997532 46788888887 5899998 79999999999999999999975332211
Q ss_pred CCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 179 CRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 179 ~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
......+.|+++.++||+|+. .+|+++.++++.+.+
T Consensus 186 ~~~~~~~~~i~~~s~sK~~~~-------~gG~i~~~~~~~~~~ 221 (349)
T cd06454 186 FGGLTDDVDIIMGTLGKAFGA-------VGGYIAGSKELIDYL 221 (349)
T ss_pred hccccccCcEEEeechhhhcc-------cCCEEECCHHHHHHH
Confidence 112345789999999999863 237888887765544
No 121
>PRK07324 transaminase; Validated
Probab=99.73 E-value=5e-17 Score=153.72 Aligned_cols=175 Identities=15% Similarity=0.205 Sum_probs=124.6
Q ss_pred cccHHHHHHHHHHHHHHHh-CCCeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEE
Q psy7357 29 ARGYEQLIGELETDLCEIT-GYDKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSV 106 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~-g~~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v 106 (302)
++|.. ++++.+++++ +.+..++..++|+ +|+..++.++. ++||+|+++.|.|+.+...++..|+++
T Consensus 61 ~~G~~----~lr~~ia~~~~~~~~~~vi~t~G~~~al~~~~~~l~--------~~gd~Vl~~~P~y~~~~~~~~~~g~~v 128 (373)
T PRK07324 61 IEGSP----EFKEAVASLYQNVKPENILQTNGATGANFLVLYALV--------EPGDHVISVYPTYQQLYDIPESLGAEV 128 (373)
T ss_pred CCCCH----HHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhC--------CCCCEEEEcCCCchhHHHHHHHcCCEE
Confidence 46765 4555566655 3555566666665 55544444332 689999999999888888888999999
Q ss_pred EEeecCCC--CCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCCcc-cccc-cC
Q psy7357 107 EPVSVRKD--GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGANMN-AQVG-LC 179 (302)
Q Consensus 107 ~~i~~~~~--g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~~~-~~~~-~~ 179 (302)
+.+|.+++ ..+|++++++.++ +++++|++++| |++|.+.+ ++++|+++|+++|+++++|.++.- .... ..
T Consensus 129 ~~v~~~~~~~~~~d~~~l~~~~~---~~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~ 205 (373)
T PRK07324 129 DYWQLKEENGWLPDLDELRRLVR---PNTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTP 205 (373)
T ss_pred EEEecccccCCCCCHHHHHHhCC---CCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCC
Confidence 99999753 3589999999887 78899999999 59998751 389999999999999999998621 1111 11
Q ss_pred CCCcc-CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 180 RPGDY-GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 180 ~p~~~-gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+.... .-.|++.+.+|+|+.| |+|+|++++++++++.+.
T Consensus 206 s~~~~~~~~I~~~s~SK~~~~~----G~RiG~i~~~~~li~~~~ 245 (373)
T PRK07324 206 SIADLYEKGISTNSMSKTYSLP----GIRVGWIAANEEVIDILR 245 (373)
T ss_pred ChhhccCCEEEEecchhhcCCc----cceeEEEecCHHHHHHHH
Confidence 11111 1236666777777654 899999999877766553
No 122
>PRK07050 cystathionine beta-lyase; Provisional
Probab=99.73 E-value=2.1e-16 Score=150.45 Aligned_cols=165 Identities=18% Similarity=0.112 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~i 109 (302)
....++++.++++.|.+.+ +...+|+.|+.++++++. ++||+||++++.|+.+.. .+...|++++.+
T Consensus 65 pt~~~Le~~lA~l~g~~~~-l~~~sgt~Ai~~~l~al~--------~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~v 135 (394)
T PRK07050 65 PTSLALAQRLAEIEGGRHA-LLQPSGLAAISLVYFGLV--------KAGDDVLIPDNAYGPNRDHGEWLARDFGITVRFY 135 (394)
T ss_pred HHHHHHHHHHHHHhCCCeE-EEeccHHHHHHHHHHHHh--------CCCCEEEEecCCcccHHHHHHHHHHhcCeEEEEE
Confidence 3468999999999998754 345667776655555553 689999999999987653 356779999988
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
+.. |.++++++++ ++|++|++++| |++|... |+++|+++||++|+++++|+++..+ ...+|.+.|+|+
T Consensus 136 d~~-----~~~~l~~~i~---~~tklV~le~p~Np~~~~~-di~~I~~ia~~~gi~livD~a~a~~--~~~~~l~~GaDi 204 (394)
T PRK07050 136 DPL-----IGAGIADLIQ---PNTRLIWLEAPGSVTMEVP-DVPAITAAARARGVVTAIDNTYSAG--LAFKPFEHGVDI 204 (394)
T ss_pred CCC-----CHHHHHHhcC---CCCeEEEEECCCCCCccHh-hHHHHHHHHHHcCCEEEEECCcccc--cccCHHHcCCeE
Confidence 742 5578999987 88999999999 5888888 8999999999999999999986443 335677889999
Q ss_pred EEeCCCcccCCCCCCCCCcceeEEEe-CCCCCCC
Q psy7357 189 SHLNLHKTFCIPHGGGGPGMGPIGVK-SHLAPFL 221 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~l 221 (302)
++.+.+|++++. ++..+|.++++ +++.+++
T Consensus 205 ~v~S~tK~~~g~---~~~~gG~v~~~~~~~~~~~ 235 (394)
T PRK07050 205 SVQALTKYQSGG---SDVLMGATITADAELHAKL 235 (394)
T ss_pred EEEECCceecCC---CCeeEEEEEECCHHHHHHH
Confidence 999999999742 23346766665 5665554
No 123
>PRK09082 methionine aminotransferase; Validated
Probab=99.73 E-value=4.9e-17 Score=154.29 Aligned_cols=182 Identities=14% Similarity=0.205 Sum_probs=136.3
Q ss_pred CCCCCCcccccHHHHHHHHHHHHHHHhCCCe---eeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH
Q psy7357 21 HPFIPQDQARGYEQLIGELETDLCEITGYDK---ISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP 96 (302)
Q Consensus 21 ~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~---~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~ 96 (302)
+.|.+ .+|..++++++++++.+++|.+. .++..++|+ ++...++.++. +++|+|+++++.|+.+.
T Consensus 61 ~~Y~~---~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~~~~~~~--------~~gd~Vli~~p~y~~~~ 129 (386)
T PRK09082 61 NQYPP---MTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALFAAILALV--------RPGDEVIVFDPSYDSYA 129 (386)
T ss_pred CCCCC---CCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHHHHHHHc--------CCCCEEEEeCCCchhhH
Confidence 44554 58999999999999999999753 245555554 55544443332 68899999999998888
Q ss_pred HHHHhCCCEEEEeecCC-CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceec---cccHHHHHHHHHHhCCEEEEecCC
Q psy7357 97 ASAQMAGMSVEPVSVRK-DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVF---EENITDVCELIHEHGGQVYLDGAN 171 (302)
Q Consensus 97 ~~~~~~g~~v~~i~~~~-~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~---~~di~~I~~ia~~~g~llivD~a~ 171 (302)
..++..|.+++.+|.++ ++.+|++++++.++ +++++|++++| |++|.. + ++++|.++|+++|+++|+|.++
T Consensus 130 ~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~v~l~~p~NPtG~~~~~~-~~~~i~~~a~~~~i~li~De~y 205 (386)
T PRK09082 130 PAIELAGGRAVRVALQPPDFRVDWQRFAAAIS---PRTRLIILNTPHNPSGTVWSAA-DMRALWQLIAGTDIYVLSDEVY 205 (386)
T ss_pred HHHHHcCCEEEEEecCcccccCCHHHHHHhcC---ccceEEEEeCCCCCCCcCCCHH-HHHHHHHHHHHCCEEEEEehhh
Confidence 88888999999999974 56899999999997 78899999998 699976 5 7999999999999999999986
Q ss_pred cc-cccc--cCC----CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 172 MN-AQVG--LCR----PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 172 ~~-~~~~--~~~----p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
.. .... ..+ ++...-.+++.+.+|+|+.| |.|+|++++++++++.+
T Consensus 206 ~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~----G~RiG~iv~~~~l~~~~ 258 (386)
T PRK09082 206 EHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVT----GWKVGYCVAPAALSAEF 258 (386)
T ss_pred hhhccCCCCCCChhhCcCccCcEEEEeechhhccch----hhhhhhhhCCHHHHHHH
Confidence 31 1111 111 11122346777777777654 89999999988776554
No 124
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=99.73 E-value=1.1e-16 Score=150.18 Aligned_cols=170 Identities=16% Similarity=0.185 Sum_probs=124.5
Q ss_pred HHHHHHHHHHhCCCeeeEee-CchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCC
Q psy7357 37 GELETDLCEITGYDKISFQP-NSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDG 115 (302)
Q Consensus 37 ~e~~~~l~~l~g~~~~~~~~-~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g 115 (302)
.++++.+++++|++..++.. ++|++.. ...+++.+. +++|+|+++++.|+.+...++..|++++.+|.+.++
T Consensus 72 ~~lr~~ia~~~~~~~~~i~~~~~Ga~~~--i~~~~~~~~-----~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~ 144 (361)
T PRK00950 72 PELREALSKYTGVPVENIIVGGDGMDEV--IDTLMRTFI-----DPGDEVIIPTPTFSYYEISAKAHGAKPVYAKREEDF 144 (361)
T ss_pred HHHHHHHHHHhCCCHHHEEEeCCCHHHH--HHHHHHHhc-----CCCCEEEEcCCChHHHHHHHHHcCCEEEEeecCCCC
Confidence 67888999999998766666 6777432 112222221 578999999998776666778889999999977777
Q ss_pred CCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccc-cCCC-CccCCcEEEeC
Q psy7357 116 TIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVG-LCRP-GDYGSDVSHLN 192 (302)
Q Consensus 116 ~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~-~~~p-~~~gaDiv~~~ 192 (302)
.+|++++++.++ +++++|++++| |++|.+. +.+++.++|+++|+++++|+++..-... .... ....--+++.+
T Consensus 145 ~~~~~~l~~~~~---~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~li~De~y~~~~~~~~~~~~~~~~~vi~~~S 220 (361)
T PRK00950 145 SLDVDSVLNAIT---EKTKVIFLCTPNNPTGNLI-PEEDIRKILESTDALVFVDEAYVEFAEYDYTPLALEYDNLIIGRT 220 (361)
T ss_pred CcCHHHHHHHhc---cCCCEEEEeCCCCCCCCCc-CHHHHHHHHHHCCcEEEEECchhhhCccchHHHHHhcCCEEEEEe
Confidence 899999999987 67888999999 5899998 7999999999999999999987311110 0000 11111255566
Q ss_pred CCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 193 LHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 193 ~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
.+|+|+.| |.|+|++.+++++++.+
T Consensus 221 ~SK~~g~~----GlRiG~~~~~~~~~~~~ 245 (361)
T PRK00950 221 FSKVFGLA----GLRIGYGFVPEWLIDYY 245 (361)
T ss_pred ehHhhcCc----hhhcchhcCCHHHHHHH
Confidence 67777654 78999999987766543
No 125
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=99.72 E-value=9.2e-17 Score=153.13 Aligned_cols=165 Identities=13% Similarity=0.091 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~i 109 (302)
....+++++++++.|.+.+ +.+.+|..|..+++.++. ++||+|+++++.|+.... .+...|++++.+
T Consensus 64 p~~~~le~~lA~l~g~~~~-i~~ssG~~Ai~~~l~all--------~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi~v~~v 134 (398)
T PRK08249 64 PTVQAFEEKVRILEGAEAA-TAFSTGMAAISNTLYTFL--------KPGDRVVSIKDTYGGTNKIFTEFLPRMGVDVTLC 134 (398)
T ss_pred hHHHHHHHHHHHHhCCCeE-EEeCChHHHHHHHHHHhc--------CCCCEEEEcCCchHHHHHHHHHHHhhCCeEEEEc
Confidence 5678999999999998765 556778776644544443 689999999999876532 345678888877
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
+. .|+++++++++ ++|++|++++| |++|.+. |+++|+++||++|+++++|+++.... ...|..+++|+
T Consensus 135 d~-----~d~e~l~~~i~---~~tklV~ie~p~NPtg~v~-dl~~I~~la~~~gi~livD~t~a~~~--~~~~l~~~~Di 203 (398)
T PRK08249 135 ET-----GDHEQIEAEIA---KGCDLLYLETPTNPTLKIV-DIERLAAAAKKVGALVVVDNTFATPI--NQNPLALGADL 203 (398)
T ss_pred CC-----CCHHHHHHhcC---CCCeEEEEECCCCCCCccC-CHHHHHHHHHHcCCEEEEECCcCccc--cCCchhhCCCE
Confidence 63 58999999998 78999999999 5899998 89999999999999999999864322 23455678999
Q ss_pred EEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 189 SHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
++.|++|+++.+ |....|+++.++++++++
T Consensus 204 vv~S~sK~l~g~---~~~~gG~vv~~~~l~~~l 233 (398)
T PRK08249 204 VIHSATKFLSGH---ADALGGVVCGSKELMEQV 233 (398)
T ss_pred EeccCceecCCC---CCceEEEEECCHHHHHHH
Confidence 999999998733 111247777777666554
No 126
>PRK08912 hypothetical protein; Provisional
Probab=99.72 E-value=9.8e-17 Score=152.21 Aligned_cols=178 Identities=17% Similarity=0.150 Sum_probs=133.2
Q ss_pred cccHHHHHHHHHHHHHHHhCCC--ee-eEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYD--KI-SFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~--~~-~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~ 104 (302)
.+|..++++.+.+.+.+.+|.+ .. ++..++|+ ++..+++.++. +++|+|+++++.|+.+...++..|.
T Consensus 62 ~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~--------~~gd~Vlv~~p~y~~~~~~~~~~g~ 133 (387)
T PRK08912 62 MMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAALLALV--------EPGDEVVLFQPLYDAYLPLIRRAGG 133 (387)
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHHHHHHhc--------CCCCEEEEeCCCchhhHHHHHHcCC
Confidence 5888889988888888877753 33 56666665 44423333322 5789999999999888888899999
Q ss_pred EEEEeecCC-CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcc-ccc---
Q psy7357 105 SVEPVSVRK-DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMN-AQV--- 176 (302)
Q Consensus 105 ~v~~i~~~~-~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~-~~~--- 176 (302)
+++.+|+++ ++.+|++++++.++ +++++|++++| |+||.+. +++++|.++|+++++++|+|.++.. ...
T Consensus 134 ~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~ 210 (387)
T PRK08912 134 VPRLVRLEPPHWRLPRAALAAAFS---PRTKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRR 210 (387)
T ss_pred EEEEEecCcccCcCCHHHHHHHhC---ccceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCC
Confidence 999999865 56899999999987 78899999999 5999874 1588899999999999999998631 111
Q ss_pred --ccCC-CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 177 --GLCR-PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 177 --~~~~-p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
.+.. ++..+-++++.+.+|.|+.| |.|+|++++++++++.+
T Consensus 211 ~~~~~~~~~~~~~~i~~~S~SK~~g~~----GlRiG~~~~~~~~~~~l 254 (387)
T PRK08912 211 HIPLMTLPGMRERTVKIGSAGKIFSLT----GWKVGFVCAAPPLLRVL 254 (387)
T ss_pred CcChhhCCCccCceEEEeechhhccCc----CceeEEEecCHHHHHHH
Confidence 0111 11123468888888888755 89999999988766654
No 127
>PLN02509 cystathionine beta-lyase
Probab=99.72 E-value=2.8e-16 Score=151.91 Aligned_cols=159 Identities=18% Similarity=0.258 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~i 109 (302)
...++++++++++.|.+.+ +..++|..+. +.+.++. ++||+||++++.|+.+.. .....|++++.+
T Consensus 133 pt~~aLE~~lA~leg~e~a-i~~~SG~aAi-~~il~ll--------~~GD~VI~~~~~y~~t~~ll~~~l~~~G~~v~~v 202 (464)
T PLN02509 133 PTRDALESLLAKLDKADRA-FCFTSGMAAL-SAVTHLI--------KNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRV 202 (464)
T ss_pred HHHHHHHHHHHHHhCCCEE-EEeCcHHHHH-HHHHHHh--------CCCCEEEEcCCchhhHHHHHHHHHHHCCeEEEEe
Confidence 4689999999999998765 4456676544 3333322 689999999999887653 345679998888
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
+. .|+++++++++ ++|++|++++| |++|.+. |+++|+++||++|+++++|+++.... ...|..+++|+
T Consensus 203 d~-----~d~e~l~~ai~---~~TklV~lesPsNPtG~i~-Dl~~I~~lAk~~g~~lIVD~A~a~~~--~~~pl~~gaDi 271 (464)
T PLN02509 203 NT-----TNLDEVAAAIG---PQTKLVWLESPTNPRQQIS-DIRKIAEMAHAQGALVLVDNSIMSPV--LSRPLELGADI 271 (464)
T ss_pred CC-----CCHHHHHHhCC---cCCeEEEEECCCCCCCCHH-HHHHHHHHHHHcCCEEEEECCccccc--cCChhhcCCcE
Confidence 64 47999999997 88999999999 5899998 89999999999999999999864443 34566789999
Q ss_pred EEeCCCcccCCCCCCCCCcceeEEEeCC
Q psy7357 189 SHLNLHKTFCIPHGGGGPGMGPIGVKSH 216 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~G~l~~~~~ 216 (302)
++.+.+|+++.+ |+...|+++++++
T Consensus 272 vv~S~tK~l~G~---gdv~gG~v~~~~~ 296 (464)
T PLN02509 272 VMHSATKFIAGH---SDVMAGVLAVKGE 296 (464)
T ss_pred EEecCcccccCC---CccceeEEEeccH
Confidence 999999998743 2344788988643
No 128
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=99.72 E-value=3.1e-16 Score=148.72 Aligned_cols=171 Identities=17% Similarity=0.147 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCC
Q psy7357 36 IGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDG 115 (302)
Q Consensus 36 ~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g 115 (302)
..++++.+++.+|++..++.+++|++.. ...+++.+. ++||+|++++|.|+.+...++..|++++.+|.++++
T Consensus 88 ~~~lr~~ia~~~~~~~~~I~~t~Ga~~~--i~~~~~~~~-----~~gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~ 160 (380)
T PLN03026 88 SRRLRAALAEDSGLESENILVGCGADEL--IDLLMRCVL-----DPGDKIIDCPPTFGMYVFDAAVNGAEVIKVPRTPDF 160 (380)
T ss_pred HHHHHHHHHHHhCcChhhEEEcCCHHHH--HHHHHHHhc-----CCCCEEEEcCCChHHHHHHHHHcCCEEEEeecCCCC
Confidence 3578899999999988788888887522 122222221 578999999999887777788899999999987777
Q ss_pred CCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcc-cc-cc-cCCCCccCCcEEEe
Q psy7357 116 TIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMN-AQ-VG-LCRPGDYGSDVSHL 191 (302)
Q Consensus 116 ~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~-~~-~~-~~~p~~~gaDiv~~ 191 (302)
.+|+++|++++.. +++++|++++| |++|.+. +.+++.++++.. +++++|.++.- .. .. ........-.|++.
T Consensus 161 ~~d~~~l~~~~~~--~~~~~v~l~~P~NPTG~~~-~~~~l~~l~~~~-~~vi~DeaY~~~~~~~~~~~~~~~~~~viv~~ 236 (380)
T PLN03026 161 SLDVPRIVEAVET--HKPKLLFLTSPNNPDGSII-SDDDLLKILELP-ILVVLDEAYIEFSTQESRMKWVKKYDNLIVLR 236 (380)
T ss_pred CcCHHHHHHHHhc--cCCcEEEEeCCCCCCCCCC-CHHHHHHHHhcC-CEEEEECcchhhcCCcchHHHHHhCCCEEEEe
Confidence 8999999999931 67899999999 5999998 799999999765 89999998631 10 00 00011122236666
Q ss_pred CCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 192 NLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 192 ~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
+.+|.|+ +.|.|+||+++++++++.+
T Consensus 237 SfSK~~g----laGlRiGy~~~~~~~i~~l 262 (380)
T PLN03026 237 TFSKRAG----LAGLRVGYGAFPLSIIEYL 262 (380)
T ss_pred cchHhhc----CccccceeeecCHHHHHHH
Confidence 6666665 4599999999988776655
No 129
>PRK08960 hypothetical protein; Provisional
Probab=99.72 E-value=1.5e-16 Score=151.00 Aligned_cols=178 Identities=14% Similarity=0.122 Sum_probs=129.0
Q ss_pred cccHHHHHHHHHHHHHHHhCC--CeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITGY--DKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~--~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
.+|..++++.+.+.+.+.+|. +..++..++|+ ++...++ ..++ +++|+|+++++.|+.+...+...|.+
T Consensus 68 ~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~---~~~~-----~~gd~vlv~~p~y~~~~~~~~~~g~~ 139 (387)
T PRK08960 68 ARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLAS---SLLV-----DPGKHWLLADPGYPCNRHFLRLVEGA 139 (387)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHHHH---HHhc-----CCCCEEEEcCCCCcchHHHHHhcCCe
Confidence 578878888888887776664 44567777776 4432222 2222 68999999999999988888888999
Q ss_pred EEEeecCCC--CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcc-cccc-c
Q psy7357 106 VEPVSVRKD--GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMN-AQVG-L 178 (302)
Q Consensus 106 v~~i~~~~~--g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~-~~~~-~ 178 (302)
++.+|++++ +.+|++++++.++ ++++++++++| |++|... +++++|+++|+++|+++++|.++.. .... .
T Consensus 140 ~~~v~~~~~~~~~~d~~~l~~~~~---~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~ 216 (387)
T PRK08960 140 AQLVPVGPDSRYQLTPALVERHWN---ADTVGALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDA 216 (387)
T ss_pred EEEEecCcccCCCCCHHHHHHHhC---ccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCC
Confidence 999998764 3689999999987 67888999999 6999874 1477888889999999999998631 1111 1
Q ss_pred CCCCccCCc-EEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 179 CRPGDYGSD-VSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 179 ~~p~~~gaD-iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
.+......+ +++.|.+|.|+.| |.|+|++++++++++.+
T Consensus 217 ~~~~~~~~~vi~~~S~SK~~g~~----GlRiG~~~~~~~~~~~~ 256 (387)
T PRK08960 217 ASVLEVDDDAFVLNSFSKYFGMT----GWRLGWLVAPPAAVPEL 256 (387)
T ss_pred CChhhccCCEEEEeecccccCCc----ccEEEEEEcCHHHHHHH
Confidence 111122234 4556667776644 89999999998776655
No 130
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=99.72 E-value=2.9e-16 Score=149.15 Aligned_cols=164 Identities=18% Similarity=0.150 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHH---HhCCCEEEEee
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASA---QMAGMSVEPVS 110 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~---~~~g~~v~~i~ 110 (302)
....++++.+++++|.+.+ +...+|..|+.+++.++. ++||+|+++++.|+.+.... ...|++++.++
T Consensus 53 p~~~~lE~~lA~l~g~~~~-l~~~sG~~Ai~~~l~~ll--------~~GD~Vlv~~~~y~~~~~~~~~~~~~g~~v~~~~ 123 (385)
T PRK08574 53 PTLRPLEEALAKLEGGVDA-LAFNSGMAAISTLFFSLL--------KAGDRVVLPMEAYGTTLRLLKSLEKFGVKVVLAY 123 (385)
T ss_pred ccHHHHHHHHHHHhCCCcE-EEeCCHHHHHHHHHHHHh--------CCCCEEEEcCCCchhHHHHHHHhhccCcEEEEEC
Confidence 4578899999999998765 445778776655555543 68999999999998775544 45678877654
Q ss_pred cCCCCCCCHHHHHHHHhccCC-CeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 111 VRKDGTIDFSDLETKVKKNKE-TLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 111 ~~~~g~iD~~~l~~~i~~~~~-~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
.|+++++++++ + +|++|++++| |++|.+. |+++|+++||++|+++++|+++.... ..+|.++|+|+
T Consensus 124 ------~d~~~l~~~i~---~~~tklV~ie~p~NPtG~v~-dl~~I~~la~~~gi~livD~t~a~~~--~~~~l~~GaDi 191 (385)
T PRK08574 124 ------PSTEDIIEAIK---EGRTKLVFIETMTNPTLKVI-DVPEVAKAAKELGAILVVDNTFATPL--LYRPLRHGADF 191 (385)
T ss_pred ------CCHHHHHHhcC---ccCceEEEEECCCCCCCEec-CHHHHHHHHHHcCCEEEEECCCCccc--cCChhhhCCcE
Confidence 36899999997 5 8999999998 6899998 89999999999999999999864332 23466789999
Q ss_pred EEeCCCcccCCCCCCCCCcceeEEE-eCCCCCCC
Q psy7357 189 SHLNLHKTFCIPHGGGGPGMGPIGV-KSHLAPFL 221 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~G~l~~-~~~l~~~l 221 (302)
++.|++|+|+.| |..-.|++++ ++++.+++
T Consensus 192 vv~S~sK~l~g~---~d~~gG~vi~~~~~~~~~~ 222 (385)
T PRK08574 192 VVHSLTKYIAGH---NDVVGGVAVAWSGEFLEEL 222 (385)
T ss_pred EEeeCceeecCC---CCceeEEEEECcHHHHHHH
Confidence 999999999743 1122575555 45555443
No 131
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=99.72 E-value=3.3e-16 Score=153.50 Aligned_cols=183 Identities=14% Similarity=0.172 Sum_probs=132.8
Q ss_pred cccccHHHHHHHHHHHHHHHhCC-C-------------eeeEeeCchHHHHHHHHHHHHHHHHh-hc-------------
Q psy7357 27 DQARGYEQLIGELETDLCEITGY-D-------------KISFQPNSGAQGEYAGLRAIQCYHQA-QD------------- 78 (302)
Q Consensus 27 e~sqG~l~~~~e~~~~l~~l~g~-~-------------~~~~~~~~Ga~a~~a~l~a~~~~~~~-~g------------- 78 (302)
|.|....++-.++-.+++++++- + ..-+...+|+.|++.++.+.|..... .+
T Consensus 122 ~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~ 201 (522)
T TIGR03799 122 ETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAA 201 (522)
T ss_pred ecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchhh
Confidence 56777878888889999999852 1 11344566778887777777654211 00
Q ss_pred ----CCCCCEEEEcCCCCcccHHHHHhCCC---EEEEeecCCCCCCCHHHHHHHHhcc---CCCeEEEEEecC-CCceec
Q psy7357 79 ----AHHRNVCLIPVSAHGTNPASAQMAGM---SVEPVSVRKDGTIDFSDLETKVKKN---KETLSCLMITYP-STFGVF 147 (302)
Q Consensus 79 ----~~~~d~Vlv~~~~hg~~~~~~~~~g~---~v~~i~~~~~g~iD~~~l~~~i~~~---~~~t~~V~i~~P-n~~G~~ 147 (302)
..++..|++++.+|.+....+...|+ +++.||+|++|.+|+++|+++|++. +.++.+|+.+.. +.+|.+
T Consensus 202 ~~~~~~~~~~v~~S~~~H~S~~kaa~~lglg~~~v~~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGai 281 (522)
T TIGR03799 202 LKHYGYDGLAILVSERGHYSLGKAADVLGIGRDNLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNI 281 (522)
T ss_pred hhhccCCceEEEECCCchHHHHHHHHHcCCCcccEEEEEeCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCc
Confidence 01346799999999888888888887 8999999999999999999999632 223444554444 378999
Q ss_pred cccHHHHHHHHHHhCCEEEEecCCcccccccC-----CCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeC
Q psy7357 148 EENITDVCELIHEHGGQVYLDGANMNAQVGLC-----RPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKS 215 (302)
Q Consensus 148 ~~di~~I~~ia~~~g~llivD~a~~~~~~~~~-----~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~ 215 (302)
+ |+++|+++|+++|++++||+|+..+..... -.+..++|.++++.||+|..|+ ++|++++++
T Consensus 282 D-pl~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~-----g~G~llvr~ 348 (522)
T TIGR03799 282 D-PLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPM-----GAGMVLFKD 348 (522)
T ss_pred C-CHHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcCc-----ccEEEEEeC
Confidence 9 799999999999999999998743322111 0122478999999999998553 678898874
No 132
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.72 E-value=3.9e-16 Score=150.18 Aligned_cols=147 Identities=16% Similarity=0.135 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~i 109 (302)
....++++.++++.|.+.+ +...+|..|+.+++.++. ++||+|++++..|+.... .+...|++++.+
T Consensus 69 p~~~~Le~~lA~l~g~~~a-v~~sSG~aAi~~al~all--------~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~v 139 (436)
T PRK07812 69 PTQDVVEQRIAALEGGVAA-LLLASGQAAETFAILNLA--------GAGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFV 139 (436)
T ss_pred chHHHHHHHHHHHhCCCeE-EEEccHHHHHHHHHHHHh--------CCCCEEEEeCCcchHHHHHHHHHhhcCeEEEEEE
Confidence 4567899999999999875 556788877756665553 689999999888875543 234578888888
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
+ +. .|+++++++++ ++|++|++++| |++|.+. |+++|+++||++|+++++|+++... ....|.++|+|+
T Consensus 140 d-d~---~d~e~l~~ai~---~~tklV~ie~~sNp~G~v~-Dl~~I~~la~~~gi~liVD~t~a~~--~~~~pl~~GaDi 209 (436)
T PRK07812 140 E-DP---DDLDAWRAAVR---PNTKAFFAETISNPQIDVL-DIPGVAEVAHEAGVPLIVDNTIATP--YLIRPLEHGADI 209 (436)
T ss_pred C-CC---CCHHHHHHhCC---CCCeEEEEECCCCCCCeec-CHHHHHHHHHHcCCEEEEECCCccc--ccCCchhcCCCE
Confidence 5 22 38999999998 88999999998 5899999 8999999999999999999986433 234677889999
Q ss_pred EEeCCCcccCC
Q psy7357 189 SHLNLHKTFCI 199 (302)
Q Consensus 189 v~~~~hK~l~~ 199 (302)
++.|+||+++.
T Consensus 210 vv~S~tK~lgg 220 (436)
T PRK07812 210 VVHSATKYLGG 220 (436)
T ss_pred EEEecccccCC
Confidence 99999999973
No 133
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=99.72 E-value=1.7e-16 Score=146.80 Aligned_cols=180 Identities=22% Similarity=0.246 Sum_probs=132.0
Q ss_pred cccHHHHHHHHHHHHHHHhCCC--eeeE-eeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITGYD--KISF-QPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~--~~~~-~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
.+|..++..++++.+...++.. ..++ ...+|+.++.+++.++. +++++|+++++.|+++...++..|.+
T Consensus 35 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~--------~~g~~vl~~~~~~~~~~~~~~~~~~~ 106 (350)
T cd00609 35 DPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALL--------NPGDEVLVPDPTYPGYEAAARLAGAE 106 (350)
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhC--------CCCCEEEEcCCCchhHHHHHHHCCCE
Confidence 4678788888888888776631 2233 34445555544444432 57899999999999998889999999
Q ss_pred EEEeecCCCCCCCH--HHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCCccccc-cc-
Q psy7357 106 VEPVSVRKDGTIDF--SDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGANMNAQV-GL- 178 (302)
Q Consensus 106 v~~i~~~~~g~iD~--~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~~~~~~-~~- 178 (302)
++.++.++++..+. +.+++.++ +++++|++++| |++|.+.+ ++++|.++|+++|+++++|+++..... ..
T Consensus 107 ~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~ 183 (350)
T cd00609 107 VVPVPLDEEGGFLLDLELLEAAKT---PKTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEP 183 (350)
T ss_pred EEEEecccccCCccCHHHHHhhcC---ccceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCcc
Confidence 99999987776665 66666665 78999999998 48898862 355555899999999999998742211 11
Q ss_pred ----CCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeC-CCCCCCCC
Q psy7357 179 ----CRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKS-HLAPFLPV 223 (302)
Q Consensus 179 ----~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~-~l~~~lpg 223 (302)
..++..+.|+++.++||+|+. +|+++|++++++ ++.+.+..
T Consensus 184 ~~~~~~~~~~~~~~~~~s~~K~~~~----~g~~~G~i~~~~~~~~~~~~~ 229 (350)
T cd00609 184 PPALALLDAYERVIVLRSFSKTFGL----PGLRIGYLIAPPEELLERLKK 229 (350)
T ss_pred cccccCcCccCcEEEEeecccccCC----cccceEEEecCHHHHHHHHHH
Confidence 224566789999999998873 378999999998 67776644
No 134
>PRK08361 aspartate aminotransferase; Provisional
Probab=99.72 E-value=1.5e-16 Score=151.18 Aligned_cols=177 Identities=14% Similarity=0.161 Sum_probs=132.1
Q ss_pred cccHHHHHHHHHHHHHHHhCC--CeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITGY--DKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~--~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
.+|..++++++.+.+.+.+|. +..++..++|+ ++...++.++. +++|.|+++++.|..+...+...|.+
T Consensus 69 ~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~--------~~g~~Vlv~~p~y~~~~~~~~~~g~~ 140 (391)
T PRK08361 69 NAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESLL--------EEGDEVIIPDPAFVCYVEDAKIAEAK 140 (391)
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHHHHHhc--------CCCCEEEEcCCCCcccHHHHHHcCCE
Confidence 478888888888888777764 34566666665 44433333332 67899999999998888888889999
Q ss_pred EEEeecCCC--CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecccc---HHHHHHHHHHhCCEEEEecCCcccc-c--
Q psy7357 106 VEPVSVRKD--GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEEN---ITDVCELIHEHGGQVYLDGANMNAQ-V-- 176 (302)
Q Consensus 106 v~~i~~~~~--g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~d---i~~I~~ia~~~g~llivD~a~~~~~-~-- 176 (302)
++.+|++++ +.+|++++++.++ +++++|++++| |++|... + +++|.++|+++++++|+|.++..-. .
T Consensus 141 ~~~v~~~~~~~~~~d~~~l~~~i~---~~~~~v~i~~p~NPtG~~~-~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~ 216 (391)
T PRK08361 141 PIRIPLREENEFQPDPDELLELIT---KRTRMIVINYPNNPTGATL-DKEVAKAIADIAEDYNIYILSDEPYEHFLYEGA 216 (391)
T ss_pred EEEEecCCccCCCCCHHHHHHhcc---cccEEEEEeCCCCCCCcCc-CHHHHHHHHHHHHHcCeEEEEEcccccceeCCC
Confidence 999999764 4699999999998 67899999999 5899886 5 8899999999999999999863111 0
Q ss_pred ccCCCC--ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 177 GLCRPG--DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 177 ~~~~p~--~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
...+.. ....++++.+.+|+|+.| |.|+|++++++++++.+
T Consensus 217 ~~~~~~~~~~~~~i~~~s~SK~~~~~----GlRiG~~~~~~~~~~~~ 259 (391)
T PRK08361 217 KHYPMIKYAPDNTILANSFSKTFAMT----GWRLGFVIAPEQVIKDM 259 (391)
T ss_pred CCCCHhhcCCCCEEEEecCchhcCCc----HhhhhhhccCHHHHHHH
Confidence 000111 123467888888988755 78899999987776654
No 135
>PRK08068 transaminase; Reviewed
Probab=99.71 E-value=1.6e-16 Score=150.91 Aligned_cols=178 Identities=19% Similarity=0.188 Sum_probs=129.7
Q ss_pred cccHHHHHHHHHHHHHHHhCC--Cee-eEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGY--DKI-SFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~--~~~-~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~ 104 (302)
.+|..++++++.+.+.+.+|. +.. ++..++|+ ++...+ +..+. +++|.|++++|.|+.+...++..|+
T Consensus 69 ~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~l~~~---~~~~~-----~~gd~vlv~~P~y~~~~~~~~~~g~ 140 (389)
T PRK08068 69 FRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGLVEL---PQCLM-----NPGDTILVPDPGYPDYLSGVALARA 140 (389)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHH---HHHhC-----CCCCEEEEcCCCCcchHHHHHhcCC
Confidence 578888888888888777784 444 56666666 433222 22221 6789999999999988888899999
Q ss_pred EEEEeecCCC--CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcc-cccc-
Q psy7357 105 SVEPVSVRKD--GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMN-AQVG- 177 (302)
Q Consensus 105 ~v~~i~~~~~--g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~-~~~~- 177 (302)
+++.+|++++ ..+|++++++.++ +++++|+++|| ||||.+- +.+++|.++|+++++++|+|.++.- ....
T Consensus 141 ~~~~i~~~~~~~~~~d~~~l~~~~~---~~~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~ 217 (389)
T PRK08068 141 QFETMPLIAENNFLPDYTKIPEEVA---EKAKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQ 217 (389)
T ss_pred EEEEeecccccCCCCCHHHHHHhcc---ccceEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCC
Confidence 9999999753 4679999999987 67899999999 5999873 1467888899999999999998621 1111
Q ss_pred -----cCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 178 -----LCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 178 -----~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
+...+...-.+++.+..|+|+.| |.|+|++++++++++.+
T Consensus 218 ~~~s~~~~~~~~~~~i~~~S~SK~~g~~----GlRiG~~~~~~~l~~~l 262 (389)
T PRK08068 218 KPVSFLQTPGAKDVGIELYTLSKTFNMA----GWRVAFAVGNESVIEAI 262 (389)
T ss_pred CCcChhhCCCccCCEEEEecchhccCCc----cceeEeEecCHHHHHHH
Confidence 00011112236777777777654 89999999988777655
No 136
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=99.71 E-value=2.9e-16 Score=149.28 Aligned_cols=182 Identities=19% Similarity=0.214 Sum_probs=132.1
Q ss_pred cccHHHHHHHHHHHHHHHhCCC---eeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYD---KISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~---~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~ 104 (302)
.+|..++.+.+.+.+.+.+|.. ..++..++|+ ++...++.++. +++|.|+++++.|+.+...++..|.
T Consensus 66 ~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~--------~~gd~vl~~~p~y~~~~~~~~~~g~ 137 (391)
T PRK07309 66 MAGLLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSASLTAIL--------EPGDKVLLPAPAYPGYEPIVNLVGA 137 (391)
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhc--------CCCCEEEEeCCCCcchHHHHHHcCC
Confidence 4677788888888887777753 2345566665 54434433332 6889999999999888888889999
Q ss_pred EEEEeecCCC-CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCccccc-c-c
Q psy7357 105 SVEPVSVRKD-GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMNAQV-G-L 178 (302)
Q Consensus 105 ~v~~i~~~~~-g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~~~~-~-~ 178 (302)
+++.+|.+++ ..+|++++++++++.++++++|++++| |++|..- .++++|.++|+++|+++++|.++..-.. + .
T Consensus 138 ~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~ 217 (391)
T PRK07309 138 EIVEIDTTENDFVLTPEMLEKAILEQGDKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEP 217 (391)
T ss_pred EEEEEecCCcCCcCCHHHHHHHhhccCCCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCC
Confidence 9999998664 478999999999754457899999998 5999862 2699999999999999999998632111 1 0
Q ss_pred -CCCCccCCc--EEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 179 -CRPGDYGSD--VSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 179 -~~p~~~gaD--iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
.+......| +++.+.+|+|+.| |.|+|++++++++++.+.
T Consensus 218 ~~~~~~~~~~~~i~~~S~SK~~g~~----GlRvG~~v~~~~~~~~~~ 260 (391)
T PRK07309 218 HVSIAEYLPDQTILINGLSKSHAMT----GWRIGLIFAPAEFTAQLI 260 (391)
T ss_pred CCCHHHhccCCEEEEecChhhccCc----cceeEEEEeCHHHHHHHH
Confidence 011111112 6777778887755 899999999987766554
No 137
>PRK04311 selenocysteine synthase; Provisional
Probab=99.71 E-value=1.5e-16 Score=153.83 Aligned_cols=171 Identities=22% Similarity=0.222 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcc----c--HHHHHhCCCEEE
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGT----N--PASAQMAGMSVE 107 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~----~--~~~~~~~g~~v~ 107 (302)
+...++++.+++++|.+.+ +..++|+.|...++.+ + .++|+|++++..|.. + +......|++++
T Consensus 127 ~r~~~~e~~lA~l~Gae~a-~vv~sgtaAl~l~l~~---l------~~GdeVIvs~~e~~~~ggs~~i~~~~~~~G~~l~ 196 (464)
T PRK04311 127 SRDRALAALLCALTGAEDA-LVVNNNAAAVLLALNA---L------AAGKEVIVSRGELVEIGGAFRIPDVMRQAGARLV 196 (464)
T ss_pred hHHHHHHHHHHHHhCCCeE-EEECCHHHHHHHHHHH---h------CCCCEEEEcchhhhhcCcchhhHHHHHHCCcEEE
Confidence 3467899999999999865 4566777655333322 2 578999999875432 1 234567899999
Q ss_pred EeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCC-C--cee--ccccHHHHHHHHHHhCCEEEEecCCcc-----ccc-
Q psy7357 108 PVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPS-T--FGV--FEENITDVCELIHEHGGQVYLDGANMN-----AQV- 176 (302)
Q Consensus 108 ~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~--~G~--~~~di~~I~~ia~~~g~llivD~a~~~-----~~~- 176 (302)
+++.+ +..|+++++++|+ ++|++|++.+++ + +|. .. |+++|+++||++|+++++|.+... ..+
T Consensus 197 ~v~~~--~~t~~~dle~aI~---~~TklV~~vh~sN~~i~G~~~~~-dl~eI~~lak~~gi~vivD~gsG~l~~~~~~gl 270 (464)
T PRK04311 197 EVGTT--NRTHLRDYEQAIN---ENTALLLKVHTSNYRIEGFTKEV-SLAELAALGKEHGLPVVYDLGSGSLVDLSQYGL 270 (464)
T ss_pred EECCC--CCCCHHHHHHhcC---ccCeEEEEEcCCCccccccCCcC-CHHHHHHHHHHcCCeEEEECCCcccccchhccC
Confidence 99863 4578999999998 789999999874 4 453 45 899999999999999999985210 010
Q ss_pred ----ccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCcc
Q psy7357 177 ----GLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPL 226 (302)
Q Consensus 177 ----~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~~ 226 (302)
.+..|.++|+|++++|+||+|+ ||+.|++++++++++++.....
T Consensus 271 ~~~p~~~~~l~~GaDiv~fSg~K~Lg------Gp~~G~i~g~~~li~~l~~~~~ 318 (464)
T PRK04311 271 PDEPTVQELLAAGVDLVTFSGDKLLG------GPQAGIIVGKKELIARLKKHPL 318 (464)
T ss_pred CCCCchhhHHhcCCcEEEecCccccc------CCceEEEEEcHHHHHHHhhchh
Confidence 1123345899999999999986 7789999999988887764333
No 138
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=99.71 E-value=2.3e-16 Score=147.73 Aligned_cols=183 Identities=19% Similarity=0.214 Sum_probs=130.8
Q ss_pred cccHHHHHHHHHHHHHHHhCC--Cee-eEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITGY--DKI-SFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~--~~~-~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
.+|..+++..+.+.+.+..|. +.. ++..++|++. +...++..+. ..| +++|.|+++++.|..+...++..|.+
T Consensus 35 ~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~--ai~~~~~~~~-~~g-~~~d~Vl~~~p~y~~~~~~~~~~g~~ 110 (350)
T TIGR03537 35 ALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKE--AIFHFPLVFI-DPE-EDRRRVIFGTPGYPVYERGALFAGGE 110 (350)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHH--HHHHHHHHHc-CCC-CCCceEEEcCCCCcchHHHHHhcCCE
Confidence 588889999999998888785 444 6778888742 2222222221 011 12379999999999888889999999
Q ss_pred EEEeecCC-CC-CCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCCccc-cccc-
Q psy7357 106 VEPVSVRK-DG-TIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGANMNA-QVGL- 178 (302)
Q Consensus 106 v~~i~~~~-~g-~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~~~~-~~~~- 178 (302)
++.+|.++ +| .+|++++++++. ++++++++++| |++|...+ .+++|.++|+++|+++|+|.++..- ...-
T Consensus 111 ~~~v~~~~~~~~~~d~~~l~~~~~---~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~ 187 (350)
T TIGR03537 111 PTAVKLKKEDGFLLRLEKVEKSIL---EETKIVWINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEPP 187 (350)
T ss_pred EEEcccCcccCCccCHHHHHHhhh---hccEEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCCCC
Confidence 99999973 33 589999999997 67899999999 59998741 3899999999999999999986321 1110
Q ss_pred CCCCccCC--cEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 179 CRPGDYGS--DVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 179 ~~p~~~ga--Div~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
.+...++. .+++.+.+|+++.| |.|+|++++++++.+.+.
T Consensus 188 ~~~~~~~~~~~i~~~s~SK~~g~~----GlRiG~~~~~~~~~~~~~ 229 (350)
T TIGR03537 188 HSALEVGIENVLAFHSLSKRSGMT----GYRSGFVAGDEKLISFLR 229 (350)
T ss_pred CchhhcCcCCEEEEeecccccCCc----cccceeeecCHHHHHHHH
Confidence 01111122 26666778877654 889999998876665543
No 139
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.71 E-value=4.1e-16 Score=149.51 Aligned_cols=148 Identities=13% Similarity=0.088 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH----HHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS----AQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~----~~~~g~~v~~i 109 (302)
....++++.++++.|.+.+ +.+.||..|+.++++++. ++||+||++.+.|+..... ....|++++++
T Consensus 61 Ptv~~lE~~la~leg~~~a-v~~~SG~aAi~~al~all--------~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~v 131 (432)
T PRK06702 61 PTLAAFEQKLAELEGGVGA-VATASGQAAIMLAVLNIC--------SSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFF 131 (432)
T ss_pred cHHHHHHHHHHHHhCCCcE-EEECCHHHHHHHHHHHhc--------CCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEE
Confidence 4588999999999999876 446788887766666553 6899999999988755443 56789999988
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
.. .+|+++++++|+ ++|++|++++| |+++.+. |+++|+++||++|+++++|++. +...+.+|-++|+||
T Consensus 132 d~----~~d~~~l~~~I~---~~Tk~I~~e~pgnP~~~v~-Di~~I~~iA~~~gi~livD~T~--~tP~~~~pl~~GADI 201 (432)
T PRK06702 132 NP----NLTADEIVALAN---DKTKLVYAESLGNPAMNVL-NFKEFSDAAKELEVPFIVDNTL--ATPYLCQAFEHGANI 201 (432)
T ss_pred CC----CCCHHHHHHhCC---cCCeEEEEEcCCCcccccc-CHHHHHHHHHHcCCEEEEECCC--CchhhCChhhcCCCE
Confidence 64 479999999998 89999999998 6888888 8999999999999999999864 333446788999999
Q ss_pred EEeCCCcccCCC
Q psy7357 189 SHLNLHKTFCIP 200 (302)
Q Consensus 189 v~~~~hK~l~~p 200 (302)
++.|.+|+++.+
T Consensus 202 vv~S~TKy~~Gh 213 (432)
T PRK06702 202 IVHSTTKYIDGH 213 (432)
T ss_pred EEEccccccCCC
Confidence 999999999854
No 140
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=99.71 E-value=1.6e-15 Score=143.57 Aligned_cols=170 Identities=16% Similarity=0.137 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCC
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRK 113 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~ 113 (302)
....++++.+++.+|.+.. +.+.+|++|...++.++. .++||+|+++++.|..+...+...|++++.+++++
T Consensus 31 ~~~~~~e~~la~~~g~~~~-v~~~sgt~aL~~~l~al~-------~~pGd~Viv~~~t~~~~~~~~~~~G~~~v~vd~d~ 102 (376)
T TIGR02379 31 PFSRRCETWLENRTGTKKA-LLTPSCTAALEMAALLLD-------IQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIRP 102 (376)
T ss_pred HHHHHHHHHHHHHhCCCeE-EEeCCHHHHHHHHHHHcC-------CCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecCC
Confidence 5688999999999999874 445666666533433331 16899999999998877777778899999999987
Q ss_pred C-CCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCccccc-ccCCCCccCCcEEEe
Q psy7357 114 D-GTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQV-GLCRPGDYGSDVSHL 191 (302)
Q Consensus 114 ~-g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~-~~~~p~~~gaDiv~~ 191 (302)
+ +.+|+++++++++ ++|++|+.++| +|... |+++|.++|+++|+++|.|+++..+.. .-...+.++ |+.++
T Consensus 103 ~~~~~d~~~le~~i~---~~tk~Iip~~~--~G~~~-d~~~I~~la~~~~i~vIeDaa~~~g~~~~~~~~g~~~-~~~~f 175 (376)
T TIGR02379 103 DTMNIDETLIESAIT---HRTKAIVPVHY--AGVAC-DMDTIMALANKHQLFVIEDAAQGVMSTYKGRALGSIG-HLGTF 175 (376)
T ss_pred CcCCCCHHHHHHhcC---cCceEEEEeCC--CCCcc-CHHHHHHHHHHCCCEEEEECccccCCccCCcccCCCC-CEEEE
Confidence 6 5799999999998 78999987764 58887 899999999999999999999854321 112334443 88888
Q ss_pred CCCcccCCCCCCCCCcceeEEEe-CCCCCCC
Q psy7357 192 NLHKTFCIPHGGGGPGMGPIGVK-SHLAPFL 221 (302)
Q Consensus 192 ~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~l 221 (302)
|.|++ +.+.. |+.+|+++++ +++.+++
T Consensus 176 Sf~~~--K~l~~-g~~gG~v~~~~~~~~~~~ 203 (376)
T TIGR02379 176 SFHET--KNYTS-GGEGGALLINDQAFIERA 203 (376)
T ss_pred eCCCC--CcCcc-cCCceEEEECCHHHHHHH
Confidence 87763 33333 4557887776 4555444
No 141
>PRK05967 cystathionine beta-lyase; Provisional
Probab=99.71 E-value=1.2e-16 Score=151.62 Aligned_cols=170 Identities=17% Similarity=0.119 Sum_probs=132.1
Q ss_pred cccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~ 104 (302)
+.+.....+++++.++.+-+.+.. +.+.+|..|..++++++. ++||+||++++.|+.+.. .++..|+
T Consensus 59 sR~gnPt~~~Le~~la~le~~~~~-v~~sSG~aAi~~~l~all--------~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi 129 (395)
T PRK05967 59 GTRGTPTTDALCKAIDALEGSAGT-ILVPSGLAAVTVPFLGFL--------SPGDHALIVDSVYYPTRHFCDTMLKRLGV 129 (395)
T ss_pred CCCCChHHHHHHHHHHHHhCCCCE-EEECcHHHHHHHHHHHhc--------CCCCEEEEccCCcHHHHHHHHHHHHhcCe
Confidence 445557788999999999886654 556678777655555553 789999999999887654 3567899
Q ss_pred EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCc
Q psy7357 105 SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGD 183 (302)
Q Consensus 105 ~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~ 183 (302)
+++.++.+ |.++++++++ ++|++|++++| |+++.+. |+++|+++||++|+++++|+++. .....+|.+
T Consensus 130 ~v~~vd~~-----~~e~l~~al~---~~TklV~lesPsNP~l~v~-dl~~I~~la~~~g~~vvVD~t~a--~p~~~~pl~ 198 (395)
T PRK05967 130 EVEYYDPE-----IGAGIAKLMR---PNTKVVHTEAPGSNTFEMQ-DIPAIAEAAHRHGAIVMMDNTWA--TPLYFRPLD 198 (395)
T ss_pred EEEEeCCC-----CHHHHHHhcC---cCceEEEEECCCCCCCcHH-HHHHHHHHHHHhCCEEEEECCcc--CceecChhH
Confidence 99998642 4578999998 78999999998 6888888 89999999999999999998753 333468999
Q ss_pred cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 184 YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 184 ~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
+|+|+++.|++|++++. |+--+|+++.++++++++
T Consensus 199 ~GaDivv~S~tKy~~Gh---~d~~~G~v~~~~~~~~~l 233 (395)
T PRK05967 199 FGVDISIHAATKYPSGH---SDILLGTVSANEKCWPQL 233 (395)
T ss_pred cCCCEEEEecccccCCC---CCeeEEEEEcCHHHHHHH
Confidence 99999999999987632 234578777776554443
No 142
>PRK07671 cystathionine beta-lyase; Provisional
Probab=99.71 E-value=4.7e-16 Score=147.30 Aligned_cols=165 Identities=16% Similarity=0.168 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCccc-HH---HHHhCCCEEEE
Q psy7357 33 EQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTN-PA---SAQMAGMSVEP 108 (302)
Q Consensus 33 l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~-~~---~~~~~g~~v~~ 108 (302)
.....++++.++++.|.+.+ +...+|+.+..+ ++++. ++||+|+++++.|+.. .. .+...|++++.
T Consensus 49 ~p~~~~Le~~lA~l~g~~~~-~~~~sG~aai~~-~~~~l--------~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~v~~ 118 (377)
T PRK07671 49 NPTRAALEELIAVLEGGHAG-FAFGSGMAAITA-VMMLF--------SSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTF 118 (377)
T ss_pred ChHHHHHHHHHHHHhCCCce-EEeCCHHHHHHH-HHHHh--------CCCCEEEECCCccchHHHHHHHHHhcCCeEEEE
Confidence 35688999999999998875 556778765422 22222 6799999999988744 32 33467999998
Q ss_pred eecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCc
Q psy7357 109 VSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSD 187 (302)
Q Consensus 109 i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaD 187 (302)
++. .|+++++++++ ++|++|++++| |++|.+. |+++|+++|+++|+++++|+++... ....|..+++|
T Consensus 119 v~~-----~d~~~l~~ai~---~~tklV~le~P~NPtg~~~-dl~~I~~la~~~g~~lvvD~a~~~~--~~~~p~~~g~D 187 (377)
T PRK07671 119 VDT-----SNLEEVEEAIR---PNTKAIYVETPTNPLLKIT-DIKKISTIAKEKGLLTIVDNTFMTP--YWQSPISLGAD 187 (377)
T ss_pred ECC-----CCHHHHHHhcC---CCCeEEEEECCCCCCCccc-CHHHHHHHHHHcCCEEEEECCCCcc--ccCChhhhCCe
Confidence 874 38999999998 78999999999 5899998 8999999999999999999986422 22356678999
Q ss_pred EEEeCCCcccCCCCCCCCCcceeEEEeC-CCCCCC
Q psy7357 188 VSHLNLHKTFCIPHGGGGPGMGPIGVKS-HLAPFL 221 (302)
Q Consensus 188 iv~~~~hK~l~~p~~~gGp~~G~l~~~~-~l~~~l 221 (302)
+++.+++|+|+.|.+ --.|++++++ ++.+++
T Consensus 188 ivv~S~sK~l~G~~~---~~~G~~v~~~~~l~~~~ 219 (377)
T PRK07671 188 IVLHSATKYLGGHSD---VVAGLVVVNSPELAEDL 219 (377)
T ss_pred EEEecCcccccCCcc---ceeEEEEeCcHHHHHHH
Confidence 999999999974421 1257677753 454443
No 143
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=99.71 E-value=1.8e-16 Score=150.43 Aligned_cols=172 Identities=16% Similarity=0.185 Sum_probs=128.7
Q ss_pred cccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEE
Q psy7357 29 ARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEP 108 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~ 108 (302)
..|..+...++++.+++++|.+.. +...+|++|+.+++.++. +++|+|+++++.|+++...++..+.+.+.
T Consensus 78 ~~G~~~~~~~le~~ia~~~g~~~~-ii~~~~~~a~~~~~~~l~--------~~gd~vi~~~~~~~s~~~~~~~~~~~~~~ 148 (393)
T TIGR01822 78 ICGTQDIHKELEAKIAAFLGTEDT-ILYASCFDANGGLFETLL--------GAEDAIISDALNHASIIDGVRLCKAKRYR 148 (393)
T ss_pred ccCChHHHHHHHHHHHHHhCCCcE-EEECchHHHHHHHHHHhC--------CCCCEEEEeccccHHHHHHHHhcCCceEE
Confidence 448788899999999999999764 444567776645444442 68999999999988877766666766654
Q ss_pred eecCCCCCCCHHHHHHHHhcc---CCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccC-----
Q psy7357 109 VSVRKDGTIDFSDLETKVKKN---KETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLC----- 179 (302)
Q Consensus 109 i~~~~~g~iD~~~l~~~i~~~---~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~----- 179 (302)
++ ..|++++++.+++. +.++++|++.++ |++|.+. |+++|+++|+++|+++++|++|..+..+..
T Consensus 149 ~~-----~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~-~l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~ 222 (393)
T TIGR01822 149 YA-----NNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIA-PLDEICDLADKYDALVMVDECHATGFLGPTGRGSH 222 (393)
T ss_pred eC-----CCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcC-CHHHHHHHHHHcCCEEEEECCccccCcCCCCCchH
Confidence 43 37999999999742 227888888776 6889998 799999999999999999999854332110
Q ss_pred -CCC-ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 180 -RPG-DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 180 -~p~-~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
..+ ..++|++++++||+++ ||++|++++++++++.+
T Consensus 223 ~~~~~~~~~di~~~s~sK~l~------g~r~G~~~~~~~~~~~l 260 (393)
T TIGR01822 223 ELCGVMGRVDIITGTLGKALG------GASGGFTTARKEVVELL 260 (393)
T ss_pred HhcCCCCCCeEEEEEChHHhh------CCCcEEEEeCHHHHHHH
Confidence 011 1257999999999875 67889999987766544
No 144
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=99.71 E-value=2.5e-16 Score=148.60 Aligned_cols=164 Identities=16% Similarity=0.191 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~i 109 (302)
....++++.++++.|.+.+ +..++|..|..+ ++++. ++||+|+++++.|+.... ..+..|++++.+
T Consensus 52 pt~~~le~~la~l~g~~~~-~~~~sG~~ai~~-~~~ll--------~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v 121 (366)
T PRK08247 52 PTRGVLEQAIADLEGGDQG-FACSSGMAAIQL-VMSLF--------RSGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYV 121 (366)
T ss_pred chHHHHHHHHHHHhCCCcE-EEEcCHHHHHHH-HHHHh--------CCCCEEEEecCCcCcHHHHHHHHhhccCceEEEE
Confidence 4578999999999999876 556777766533 22322 578999999998876433 345689999988
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecCC-CceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYPS-TFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
+. .|+++++++++ ++|++|++++|| ++|... |+++|+++||++|+++++|.++.... ...|.+.++|+
T Consensus 122 d~-----~d~~~l~~~i~---~~tklv~le~P~NP~~~~~-dl~~I~~la~~~g~~lIvD~t~~~~~--~~~p~~~g~di 190 (366)
T PRK08247 122 NT-----ASLKAIEQAIT---PNTKAIFIETPTNPLMQET-DIAAIAKIAKKHGLLLIVDNTFYTPV--LQRPLEEGADI 190 (366)
T ss_pred CC-----CCHHHHHHhcc---cCceEEEEECCCCCCCcHH-HHHHHHHHHHHcCCEEEEECCCcccc--ccCchhcCCcE
Confidence 75 48999999998 789999999995 888888 89999999999999999999864333 23466678999
Q ss_pred EEeCCCcccCCCCCCCCCcceeEEEe-CCCCCCC
Q psy7357 189 SHLNLHKTFCIPHGGGGPGMGPIGVK-SHLAPFL 221 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~l 221 (302)
++.|.+|+++.+ ++...|++.++ +++.+++
T Consensus 191 ~i~S~sK~~~g~---~d~~~G~iv~~~~~l~~~~ 221 (366)
T PRK08247 191 VIHSATKYLGGH---NDVLAGLVVAKGQELCERL 221 (366)
T ss_pred EEeecceeccCC---CceeeeEEecChHHHHHHH
Confidence 999999999732 23367888886 4554443
No 145
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=99.71 E-value=1.8e-16 Score=150.85 Aligned_cols=178 Identities=16% Similarity=0.140 Sum_probs=129.5
Q ss_pred cccHHHHHHHHHHHHHHHhCCC---ee-eEeeCchHH-HHHHHHHHHHHHHHhhcCCC---CCEEEEcCCCCcccHHHHH
Q psy7357 29 ARGYEQLIGELETDLCEITGYD---KI-SFQPNSGAQ-GEYAGLRAIQCYHQAQDAHH---RNVCLIPVSAHGTNPASAQ 100 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~---~~-~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~---~d~Vlv~~~~hg~~~~~~~ 100 (302)
.+|..++++.+.+++.+.+|.+ .. ++..++|++ +...++.++. ++ +|.|++++|.|+.+...++
T Consensus 64 ~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~--------~~~~~gd~vlv~~P~y~~~~~~~~ 135 (396)
T PRK09147 64 TAGLPALREAIAAWLERRYGLPALDPATQVLPVNGSREALFAFAQTVI--------DRDGPGPLVVCPNPFYQIYEGAAL 135 (396)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHHHHHHHHHc--------CCCCCCCEEEEcCCCccchHHHHH
Confidence 5788888888888888877854 33 677777774 3433333332 46 8899999999988888888
Q ss_pred hCCCEEEEeecCCC--CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCccc-
Q psy7357 101 MAGMSVEPVSVRKD--GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMNA- 174 (302)
Q Consensus 101 ~~g~~v~~i~~~~~--g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~~- 174 (302)
..|.+++.+|++++ ..+|++++++.+. +++++++++|| ||||.+- +++++|.++|+++++++|.|.++.--
T Consensus 136 ~~g~~~~~vp~~~~~~~~~d~~~l~~~~~---~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~ 212 (396)
T PRK09147 136 LAGAEPYFLNCDPANNFAPDFDAVPAEVW---ARTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIY 212 (396)
T ss_pred hcCCEEEEeccCccccCccCHHHHHHHHh---hccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccc
Confidence 99999999999753 4799999999887 68899999999 5999872 26889999999999999999986321
Q ss_pred cccc-CCC------CccCC---c--EEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 175 QVGL-CRP------GDYGS---D--VSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 175 ~~~~-~~p------~~~ga---D--iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
...- ..+ ...+. | |++.+..|.|+.| |.|+|++++++++++.+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~----GlRiG~~~~~~~l~~~~ 267 (396)
T PRK09147 213 FDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVP----GLRSGFVAGDAALLKKF 267 (396)
T ss_pred cCCCCCCchhhhhccccCccccccEEEEeccccccCCc----cceeeeecCCHHHHHHH
Confidence 1110 000 01111 2 6666666766544 89999999988776655
No 146
>PLN02368 alanine transaminase
Probab=99.71 E-value=3.5e-16 Score=149.54 Aligned_cols=183 Identities=19% Similarity=0.233 Sum_probs=130.1
Q ss_pred cccHHHHHHHHHHHHHHHhCC--CeeeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITGY--DKISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~--~~~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
++|..++++++.+++.+..|. +..++..++|+. +...++.++. .++||.|++++|.|+.+...++..|.+
T Consensus 106 ~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~-------~~pGd~Vli~~P~Y~~y~~~~~~~g~~ 178 (407)
T PLN02368 106 SRGLPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVI-------RGEKDGVLVPVPQYPLYSATISLLGGT 178 (407)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHc-------CCCCCEEEEeCCCCccHHHHHHHcCCE
Confidence 689889999999888887785 445777778874 4433333322 147999999999999998889999999
Q ss_pred EEEeecCCC--CCCCHHHHHHHHhcc---CCCeEEEEEecC-CCceec--cccHHHHHHHHHHhCCEEEEecCCcc-ccc
Q psy7357 106 VEPVSVRKD--GTIDFSDLETKVKKN---KETLSCLMITYP-STFGVF--EENITDVCELIHEHGGQVYLDGANMN-AQV 176 (302)
Q Consensus 106 v~~i~~~~~--g~iD~~~l~~~i~~~---~~~t~~V~i~~P-n~~G~~--~~di~~I~~ia~~~g~llivD~a~~~-~~~ 176 (302)
++.+|++++ ..+|+++|++.+++. ..++++++++|| |+||.+ .+.+++|.++|+++|+++|.|.++.- ...
T Consensus 179 ~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~ 258 (407)
T PLN02368 179 LVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNIYQ 258 (407)
T ss_pred EEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccccccccC
Confidence 999998753 579999999999731 127899999999 699987 22688999999999999999998632 111
Q ss_pred c---cCCCC----cc------CCc-EEEeCCCcccCCCCCCCCCcceeEEE---eCCCCCCC
Q psy7357 177 G---LCRPG----DY------GSD-VSHLNLHKTFCIPHGGGGPGMGPIGV---KSHLAPFL 221 (302)
Q Consensus 177 ~---~~~p~----~~------gaD-iv~~~~hK~l~~p~~~gGp~~G~l~~---~~~l~~~l 221 (302)
. ..+.. .+ ... |++.+.+|+|+ ++.|+|+||+.+ ++++++.+
T Consensus 259 ~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~---~~~GlRiGy~i~~~~~~~li~~~ 317 (407)
T PLN02368 259 DERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYW---GECGQRGGYFEMTNIPPKTVEEI 317 (407)
T ss_pred CCCCcccHHHHHhhhcccccccceEEEEecCCcccc---cCCccceEEEEEeCCCHHHHHHH
Confidence 1 11100 11 113 44455566662 344999999985 55665544
No 147
>KOG0259|consensus
Probab=99.71 E-value=3e-16 Score=143.20 Aligned_cols=179 Identities=17% Similarity=0.205 Sum_probs=136.2
Q ss_pred CCCCCCCcccccHHHHHHHHHHHHHHHhCC--CeeeEeeCch-HHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH
Q psy7357 20 MHPFIPQDQARGYEQLIGELETDLCEITGY--DKISFQPNSG-AQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP 96 (302)
Q Consensus 20 ~~py~p~e~sqG~l~~~~e~~~~l~~l~g~--~~~~~~~~~G-a~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~ 96 (302)
++-|.| ++|.+.+++++.+.+.+-..- +...+..++| ++|.+.++.++. +++-.||+|+|.|+.|.
T Consensus 96 ~N~Yap---s~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~LA--------~p~aNILlPrPGfp~Y~ 164 (447)
T KOG0259|consen 96 GNGYAP---SVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISSLA--------NPGANILLPRPGFPLYD 164 (447)
T ss_pred CCCcCC---ccccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHHhc--------CCCCceecCCCCCchHH
Confidence 677777 899999999888876553332 2234455555 688767766654 78889999999998888
Q ss_pred HHHHhCCCEEEEeecCC--CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceec--cccHHHHHHHHHHhCCEEEEecCC
Q psy7357 97 ASAQMAGMSVEPVSVRK--DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVF--EENITDVCELIHEHGGQVYLDGAN 171 (302)
Q Consensus 97 ~~~~~~g~~v~~i~~~~--~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~--~~di~~I~~ia~~~g~llivD~a~ 171 (302)
.-+...|++|+.+.+-+ +..+|++.+|++++ ++|+++++.|| |+.|.+ ...+++|+++|+++|+++|.|+++
T Consensus 165 ~~a~~~~lEVR~ydlLPe~~weIDL~~veal~D---ENT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY 241 (447)
T KOG0259|consen 165 TRAIYSGLEVRYYDLLPEKDWEIDLDGVEALAD---ENTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVY 241 (447)
T ss_pred HhhhhcCceeEeecccCcccceechHHHHHhhc---cCeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhc
Confidence 88889999999998754 56899999999999 89999999999 588865 225999999999999999999986
Q ss_pred cc-ccc--ccCCCCccCC--c-EEEeCCCcccCCCCCCCCCcceeEEEeCC
Q psy7357 172 MN-AQV--GLCRPGDYGS--D-VSHLNLHKTFCIPHGGGGPGMGPIGVKSH 216 (302)
Q Consensus 172 ~~-~~~--~~~~p~~~ga--D-iv~~~~hK~l~~p~~~gGp~~G~l~~~~~ 216 (302)
-. .++ .+.+.+.+.- - +.+++..|.+-.| |||+|+++..+.
T Consensus 242 ~~~vfg~~pfvpmg~fssiVPVitlggisKrW~VP----GWRlGWi~~hD~ 288 (447)
T KOG0259|consen 242 GHTVFGDKPFVPMGKFSSIVPVITLGGISKRWIVP----GWRLGWIALHDP 288 (447)
T ss_pred ceeecCCCCccchhhccccCceEeecccccccccC----CceeeeEEEecc
Confidence 32 122 1223344432 2 4455578888888 999999999853
No 148
>PRK07682 hypothetical protein; Validated
Probab=99.71 E-value=1.7e-16 Score=150.12 Aligned_cols=185 Identities=15% Similarity=0.174 Sum_probs=135.7
Q ss_pred CCCCCCCcccccHHHHHHHHHHHHHHHhCCC--ee-eEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCccc
Q psy7357 20 MHPFIPQDQARGYEQLIGELETDLCEITGYD--KI-SFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTN 95 (302)
Q Consensus 20 ~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~--~~-~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~ 95 (302)
+..|.+ .+|..++++++.+++.+.+|.+ .. ++..++|+ +|...++.++. ++||+|+++++.|+.+
T Consensus 50 ~~~Y~~---~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~--------~~gd~vl~~~p~y~~~ 118 (378)
T PRK07682 50 YTSYTA---NAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMRAII--------NPGDEVLIVEPSFVSY 118 (378)
T ss_pred CCCCCC---CCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhC--------CCCCEEEEeCCCchhh
Confidence 344554 5788899999999998877764 22 46666665 44433333332 6899999999999888
Q ss_pred HHHHHhCCCEEEEeecCC--CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecC
Q psy7357 96 PASAQMAGMSVEPVSVRK--DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGA 170 (302)
Q Consensus 96 ~~~~~~~g~~v~~i~~~~--~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a 170 (302)
...++..|.+++.++.+. ++.+|+++++++++ +++++|++++| |++|.+. +++++|.++|+++++++|+|.+
T Consensus 119 ~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~ 195 (378)
T PRK07682 119 APLVTLAGGVPVPVATTLENEFKVQPAQIEAAIT---AKTKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEI 195 (378)
T ss_pred HHHHHHcCCEEEEeecCCccCCCCCHHHHHhhcC---cccEEEEEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehh
Confidence 888888999999999853 46799999999997 68899999999 5899873 2599999999999999999998
Q ss_pred Ccccc-cc-cCC----CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 171 NMNAQ-VG-LCR----PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 171 ~~~~~-~~-~~~----p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+..-. .. ..+ ++...-.+++.+.+|+|+.| |.|+|++++++++++.+.
T Consensus 196 y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~----GlR~G~~~~~~~~i~~l~ 249 (378)
T PRK07682 196 YAELTYDEAYTSFASIKGMRERTILISGFSKGFAMT----GWRLGFIAAPVYFSEAML 249 (378)
T ss_pred hhhcccCCCCCChhhcccccCCEEEEecCcccccCh----hhhhhhhhcCHHHHHHHH
Confidence 63111 00 000 11112357777778887655 889999999987777653
No 149
>PRK07777 aminotransferase; Validated
Probab=99.71 E-value=2.2e-16 Score=149.81 Aligned_cols=178 Identities=20% Similarity=0.200 Sum_probs=133.2
Q ss_pred cccHHHHHHHHHHHHHHHhCCCe--e-eEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYDK--I-SFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~--~-~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~ 104 (302)
.+|..++++.+.+.+.+.+|.+. . ++..++|+ +|..+++.++. +++|+|+++.+.|+.+...++..|.
T Consensus 60 ~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~--------~~gd~vli~~p~y~~~~~~~~~~g~ 131 (387)
T PRK07777 60 GPGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAAVLGLV--------EPGDEVLLIEPYYDSYAAVIAMAGA 131 (387)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhc--------CCCCEEEEeCCCchhhHHHHHHCCC
Confidence 57888888888888888888753 2 35555554 55534443332 6789999999998888778888999
Q ss_pred EEEEeecCCC---CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcc-cc-c
Q psy7357 105 SVEPVSVRKD---GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMN-AQ-V 176 (302)
Q Consensus 105 ~v~~i~~~~~---g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~-~~-~ 176 (302)
+++.++.+++ +.+|+++++++++ +++++|++++| |++|... +++++|.++|+++++++|+|.++.. .. .
T Consensus 132 ~~~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~ 208 (387)
T PRK07777 132 HRVPVPLVPDGRGFALDLDALRAAVT---PRTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDG 208 (387)
T ss_pred EEEEeecCCccCCCcCCHHHHHHhcC---cccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCC
Confidence 9999998754 3589999999987 67899999998 5899863 2699999999999999999988631 11 0
Q ss_pred ----ccCC-CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 177 ----GLCR-PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 177 ----~~~~-p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
.+.. ++..+.++++.+.+|+|+.| |.|+|++.+++++.+.+
T Consensus 209 ~~~~~~~~~~~~~~~~i~~~S~SK~~g~~----GlRiG~~~~~~~l~~~~ 254 (387)
T PRK07777 209 ARHLPLATLPGMRERTVTISSAAKTFNVT----GWKIGWACGPAPLIAAV 254 (387)
T ss_pred CCcccHhhCCCCcCcEEEEeechhhccCc----CceeEEEecCHHHHHHH
Confidence 1111 12234578888889988765 88999999988766554
No 150
>PRK09148 aminotransferase; Validated
Probab=99.70 E-value=2.4e-16 Score=150.59 Aligned_cols=186 Identities=20% Similarity=0.187 Sum_probs=132.2
Q ss_pred CCCCCCcccccHHHHHHHHHHHHHHHhCCC--ee-eEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH
Q psy7357 21 HPFIPQDQARGYEQLIGELETDLCEITGYD--KI-SFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP 96 (302)
Q Consensus 21 ~py~p~e~sqG~l~~~~e~~~~l~~l~g~~--~~-~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~ 96 (302)
..|.+ .+|..++++.+.+.+.+.+|.+ .. ++..++|++ +...++.++. ++||.|++++|.|+.+.
T Consensus 62 ~~Y~~---~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~--------~~gd~Vl~~~P~y~~~~ 130 (405)
T PRK09148 62 HRYSA---SKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFANMAQAIT--------APGDVILCPNPSYPIHA 130 (405)
T ss_pred CCCCC---CCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHhc--------CCCCEEEEcCCCCcccH
Confidence 44554 5788899999999888877753 44 577777874 3433333332 68999999999998888
Q ss_pred HHHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCCcc
Q psy7357 97 ASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGANMN 173 (302)
Q Consensus 97 ~~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~~~ 173 (302)
..+...|.+++.+|.+.++. +++++++.++.+.+++++|++++| |++|...+ .+++|.++|+++|+++|+|.++..
T Consensus 131 ~~~~~~g~~v~~v~~~~~~~-~~~~l~~~~~~~~~~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~ 209 (405)
T PRK09148 131 FGFIMAGGVIRSVPAEPDEE-FFPALERAVRHSIPKPIALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSE 209 (405)
T ss_pred HHHHhcCCEEEEEeCCCCCC-CccCHHHHHhhccccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchh
Confidence 78888999999999875542 355566666544478899999998 59998741 367899999999999999998731
Q ss_pred -cccc--cCCCC----ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 174 -AQVG--LCRPG----DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 174 -~~~~--~~~p~----~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
.... ..+.. ..+..|++.+.+|+|+.| |.|+|++++++++++.+.
T Consensus 210 ~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~p----GlR~G~~v~~~~~i~~l~ 261 (405)
T PRK09148 210 IYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMA----GWRMGFAVGNERLIAALT 261 (405)
T ss_pred hhcCCCCCCChhhCCCccCcEEEEeccccccCCc----chheeeeeCCHHHHHHHH
Confidence 1111 11111 112235577778888766 899999999887776553
No 151
>PRK06290 aspartate aminotransferase; Provisional
Probab=99.70 E-value=2.7e-16 Score=150.51 Aligned_cols=179 Identities=16% Similarity=0.203 Sum_probs=132.8
Q ss_pred ccHHHHHHHHHHHHHHHhCCC---ee-eEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 30 RGYEQLIGELETDLCEITGYD---KI-SFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~---~~-~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
+|..++++.+.+.+.+.+|.+ .. ++..++|++.. ...++..+. ++||.|++++|.|+.+...++..|.+
T Consensus 81 ~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~a--l~~~~~~~~-----~~gd~Vlv~~P~y~~~~~~~~~~g~~ 153 (410)
T PRK06290 81 NGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPA--LAMLPSCFI-----NPGDVTLMTVPGYPVTGTHTKYYGGE 153 (410)
T ss_pred CCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHHH--HHHHHHHhC-----CCCCEEEEeCCCCccHHHHHHHcCCE
Confidence 688888888888888777754 33 68888888522 122222221 68999999999998888888999999
Q ss_pred EEEeecCCC--CCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCCccc-cccc-
Q psy7357 106 VEPVSVRKD--GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGANMNA-QVGL- 178 (302)
Q Consensus 106 v~~i~~~~~--g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~~~~-~~~~- 178 (302)
++.+|.+++ ..+|++++++.+. +++++|++++| ||||.+-+ .+++|.++|+++|+++++|.++..- ....
T Consensus 154 v~~v~~~~~~~~~~d~~~l~~~~~---~~~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~ 230 (410)
T PRK06290 154 VYNLPLLEENNFLPDLDSIPKDIK---EKAKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKP 230 (410)
T ss_pred EEEEecCCCcCCcCCHHHHHHhhc---ccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCCC
Confidence 999999764 4679999999887 68899999999 59998741 4788899999999999999986421 1110
Q ss_pred CC----CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 179 CR----PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 179 ~~----p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
.+ ......+|++.+.+|+++.| |.|+||+++++++++.+.
T Consensus 231 ~s~~~~~~~~~~~I~i~SfSK~~g~~----GlRiG~ii~~~~l~~~l~ 274 (410)
T PRK06290 231 LSFLSVPGAKEVGVEIHSLSKAYNMT----GWRLAFVVGNELIVKAFA 274 (410)
T ss_pred cChhcCCCccccEEEEeechhhcCCc----hhheEeEEeCHHHHHHHH
Confidence 01 11123458888777877654 899999999887766553
No 152
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=99.70 E-value=2.4e-16 Score=149.52 Aligned_cols=179 Identities=16% Similarity=0.145 Sum_probs=130.2
Q ss_pred cccHHHHHHHHHHHHHHHhCC--Cee-eEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGY--DKI-SFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~--~~~-~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~ 104 (302)
.+|..++++.+.+++.+..|. +.. ++..++|++ +...++.++. ++||.|++++|.|+.+...++..|.
T Consensus 67 ~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~al~~~~~~l~--------~~gd~Vlv~~P~y~~~~~~~~~~g~ 138 (388)
T PRK07366 67 FHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEGTAHLPLAVL--------NPGDFALLLDPGYPSHAGGVYLAGG 138 (388)
T ss_pred CCCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHHHHHHHHHhC--------CCCCEEEEcCCCCcchHHHHHhcCC
Confidence 578888888888888877774 444 577777874 3322222222 6899999999999988888999999
Q ss_pred EEEEeecCCC--CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcc-ccccc
Q psy7357 105 SVEPVSVRKD--GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMN-AQVGL 178 (302)
Q Consensus 105 ~v~~i~~~~~--g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~-~~~~~ 178 (302)
+++.+|++++ ...|++++++.+. +++++|++++| ||||..- +.+++|.++|+++|+++|.|.++.- .....
T Consensus 139 ~~~~v~~~~~~~~~~d~~~l~~~~~---~~~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~ 215 (388)
T PRK07366 139 QIYPMPLRAENDFLPVFADIPTEVL---AQARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGE 215 (388)
T ss_pred EEEEEECCCccCCCCCHHHHHHhhc---ccceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCC
Confidence 9999999754 3578999988876 67899999999 5999872 2578888899999999999998631 11110
Q ss_pred ---CCCC---ccCCc-EEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 179 ---CRPG---DYGSD-VSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 179 ---~~p~---~~gaD-iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
.+.. ..+.. |++.+.+|+|+.| |.|+|++++++++++.+.
T Consensus 216 ~~~~~~~~~~~~~~~vi~~~SfSK~~g~~----GlRiG~~v~~~~li~~l~ 262 (388)
T PRK07366 216 VEPPSILQADPEKSVSIEFFTLSKSYNMG----GFRIGFAIGNAQLIQALR 262 (388)
T ss_pred CCCCChhhCCCCcccEEEEeecccccCCc----chhheehcCCHHHHHHHH
Confidence 0111 11112 5566677777655 899999999888776653
No 153
>PRK07337 aminotransferase; Validated
Probab=99.70 E-value=2.6e-16 Score=149.34 Aligned_cols=178 Identities=17% Similarity=0.136 Sum_probs=129.9
Q ss_pred cccHHHHHHHHHHHHHHHhCC--CeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITGY--DKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~--~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
.+|..++++.+.+.+.+..|. +..++..++|+ +|...++.++. +++|+|+++++.|+.+...++..|.+
T Consensus 66 ~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~--------~~gd~Vlv~~p~y~~~~~~~~~~g~~ 137 (388)
T PRK07337 66 ALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLLACLALV--------ERGDEVLMPDPSYPCNRHFVAAAEGR 137 (388)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHHHHHHHHHhc--------CCCCEEEEeCCCchhhHHHHHHcCCE
Confidence 578778888888888777775 44466666665 43322222222 68999999999999888778888999
Q ss_pred EEEeecCC--CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCc-ccccc-c
Q psy7357 106 VEPVSVRK--DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANM-NAQVG-L 178 (302)
Q Consensus 106 v~~i~~~~--~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~-~~~~~-~ 178 (302)
++.+|.++ ++.+|++++++.++ +++++|++++| |++|... +++++|.++|+++|+++++|.++. ..... .
T Consensus 138 ~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~ 214 (388)
T PRK07337 138 PVLVPSGPAERFQLTAADVEAAWG---ERTRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAP 214 (388)
T ss_pred EEEeecCCccCCcCCHHHHHhhcC---ccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCCC
Confidence 99999874 35799999999997 78899999999 5899863 158999999999999999998753 11111 1
Q ss_pred CCCCccCCcEE-EeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 179 CRPGDYGSDVS-HLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 179 ~~p~~~gaDiv-~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
.+...++.+++ +.+.+|+|+.| |.|+|++++++++++.+
T Consensus 215 ~~~~~~~~~vi~~~S~SK~~~~~----G~RiG~~~~~~~l~~~l 254 (388)
T PRK07337 215 VSALSLGDDVITINSFSKYFNMT----GWRLGWLVVPEALVGTF 254 (388)
T ss_pred cChhhccCCEEEEEechhhcCCc----hhheeeeecCHHHHHHH
Confidence 11222344554 55677877655 89999999987766554
No 154
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=99.70 E-value=4.6e-16 Score=147.04 Aligned_cols=183 Identities=17% Similarity=0.229 Sum_probs=132.3
Q ss_pred cccccHHHHHHHHHHHHHHHhCCC--------eeeEeeCchHHHHHHHHHHHHHHHHh----hcC--CCCCEEEEcCCCC
Q psy7357 27 DQARGYEQLIGELETDLCEITGYD--------KISFQPNSGAQGEYAGLRAIQCYHQA----QDA--HHRNVCLIPVSAH 92 (302)
Q Consensus 27 e~sqG~l~~~~e~~~~l~~l~g~~--------~~~~~~~~Ga~a~~a~l~a~~~~~~~----~g~--~~~d~Vlv~~~~h 92 (302)
+.+....++-.++.+++++++|.+ ...+.+.+|+.+++.++.+.|..+.. .+. .++-+|++++..|
T Consensus 72 ~~~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH 151 (373)
T PF00282_consen 72 EASPAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAH 151 (373)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-
T ss_pred ccccccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccc
Confidence 556777788888999999999998 23556677888887888877764321 121 1234788898899
Q ss_pred cccHHHHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCC---eEEEEEecCC-CceeccccHHHHHHHHHHhCCEEEEe
Q psy7357 93 GTNPASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKET---LSCLMITYPS-TFGVFEENITDVCELIHEHGGQVYLD 168 (302)
Q Consensus 93 g~~~~~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~---t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~g~llivD 168 (302)
.+....+...|+.++.||+++++.+|+++|+++|++...+ +.+|+.+-++ .+|.++ |+++|+++|+++++++|||
T Consensus 152 ~S~~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D-~l~~i~~i~~~~~~wlHVD 230 (373)
T PF00282_consen 152 YSIEKAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAID-PLEEIADICEKYNIWLHVD 230 (373)
T ss_dssp THHHHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB--SHHHHHHHHHHCT-EEEEE
T ss_pred cHHHHhcceeeeEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCccccccc-CHHHHhhhccccceeeeec
Confidence 8888899999999999999999999999999999743222 3355556564 789999 8999999999999999999
Q ss_pred cCCccccccc--CC---CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeC
Q psy7357 169 GANMNAQVGL--CR---PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKS 215 (302)
Q Consensus 169 ~a~~~~~~~~--~~---p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~ 215 (302)
+|..-+.... .+ .+-..+|-++.+.||++..|+ +.|++++++
T Consensus 231 aA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~-----~~~~~l~r~ 277 (373)
T PF00282_consen 231 AAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPY-----GCGVLLVRD 277 (373)
T ss_dssp ETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SS-----S-EEEEESS
T ss_pred ccccccccccccccccccccccccccccchhhhhcCCc-----cceeEEeec
Confidence 9863211111 11 133468999999999999874 567888885
No 155
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=99.70 E-value=7.6e-16 Score=144.56 Aligned_cols=170 Identities=16% Similarity=0.162 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCC
Q psy7357 36 IGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDG 115 (302)
Q Consensus 36 ~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g 115 (302)
..++++.+++.++++..++..++|++.. ...+++.+. +++|+|+++++.|+.+...+...|.+++.+|.+ ++
T Consensus 66 ~~~lr~~ia~~~~~~~~~i~~t~G~~~~--l~~~~~~~~-----~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~-~~ 137 (359)
T PRK03158 66 APELRTKVAKHLGVDEEQLLFGAGLDEV--IQMISRALL-----NPGTNTVMAEPTFSQYRHNAIIEGAEVREVPLK-DG 137 (359)
T ss_pred HHHHHHHHHHHhCCCHHHEEECCCHHHH--HHHHHHHHh-----CCCCEEEEcCCCHHHHHHHHHHcCCeEEEEecC-CC
Confidence 3567888999999887777777787422 122223222 578999999999887777788889999999996 67
Q ss_pred CCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHH--hCCEEEEecCCcccc-ccc-CCC----CccCC
Q psy7357 116 TIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHE--HGGQVYLDGANMNAQ-VGL-CRP----GDYGS 186 (302)
Q Consensus 116 ~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~--~g~llivD~a~~~~~-~~~-~~p----~~~ga 186 (302)
.+|++++++.++ +++++|++++| |++|.+. +.+++.++++. +|+++|+|.++..-. ... ..+ ...+-
T Consensus 138 ~~d~~~l~~~~~---~~~~~v~i~~p~NPtG~~~-~~~~l~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 213 (359)
T PRK03158 138 GHDLEAMLKAID---EQTKIVWICNPNNPTGTYV-NHEELLSFLESVPSHVLVVLDEAYYEYVTAEDYPDTLPLLEKYEN 213 (359)
T ss_pred CcCHHHHHHhcC---CCCCEEEEeCCCCCCCCCC-CHHHHHHHHHhCCCCcEEEEECchHhhcCCcccccHHHHHHhcCC
Confidence 799999999887 68889999999 5999988 68888888877 589999999863211 110 011 11233
Q ss_pred cEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 187 DVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 187 Div~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
.+++.+..|+|+.| |.|+|++++++++++.+
T Consensus 214 vi~~~S~SK~~g~~----GlRiG~~v~~~~~~~~~ 244 (359)
T PRK03158 214 LIVLRTFSKAYGLA----ALRVGYGIASEELIEKL 244 (359)
T ss_pred EEEEEechHhhcCc----chhhehhcCCHHHHHHH
Confidence 46666667776644 88999999988766654
No 156
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=99.70 E-value=4.3e-16 Score=153.39 Aligned_cols=171 Identities=15% Similarity=0.125 Sum_probs=123.8
Q ss_pred cccHHHHHHHHHHHHHHHhC--CCeeeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITG--YDKISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g--~~~~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
++|..++++++.+.+.+..+ ++..++..++|++ +. .++++.++ ++||+|++++|.|+.+...++..|.+
T Consensus 184 ~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~~eal---~~~~~~l~-----~~Gd~Vli~~P~y~~y~~~~~~~g~~ 255 (517)
T PRK13355 184 SKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGVSELI---NLSMSALL-----DDGDEVLIPSPDYPLWTACVNLAGGT 255 (517)
T ss_pred CcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHH---HHHHHHhC-----CCCCEEEEcCCCCcCHHHHHHHCCCE
Confidence 68888888888877755443 4556777777874 33 22333222 68999999999999888888999999
Q ss_pred EEEeecCCC--CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcc-cccc--
Q psy7357 106 VEPVSVRKD--GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMN-AQVG-- 177 (302)
Q Consensus 106 v~~i~~~~~--g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~-~~~~-- 177 (302)
++.++++++ +.+|+++|+++++ +++++|+++|| |+||.+- +++++|.++|+++|+++|+|.++.- ...+
T Consensus 256 ~v~~~~~~~~~~~~d~~~l~~~~~---~~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~ 332 (517)
T PRK13355 256 AVHYRCDEQSEWYPDIDDIRSKIT---SRTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLE 332 (517)
T ss_pred EEEeecCcccCCCCCHHHHHHhcC---cCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCC
Confidence 999998753 5799999999997 78999999999 5999873 2489999999999999999998631 1111
Q ss_pred cCCCCccCCc--EEE-eCCCcccCCCCCCCCCcceeEEEe
Q psy7357 178 LCRPGDYGSD--VSH-LNLHKTFCIPHGGGGPGMGPIGVK 214 (302)
Q Consensus 178 ~~~p~~~gaD--iv~-~~~hK~l~~p~~~gGp~~G~l~~~ 214 (302)
..+......| +++ .+.+|+++ +.|+|+||++++
T Consensus 333 ~~s~~~~~~~~~vi~~~S~SK~~~----~~G~RiG~~i~~ 368 (517)
T PRK13355 333 HTSIASLAPDLFCVTFSGLSKSHM----IAGYRIGWMILS 368 (517)
T ss_pred cccHHHhCCCCeEEEEecchhhcc----CcccceEEEEee
Confidence 1111122224 332 44556655 459999999965
No 157
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=99.70 E-value=5.3e-15 Score=142.65 Aligned_cols=169 Identities=18% Similarity=0.186 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHH-HHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCC
Q psy7357 35 LIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCY-HQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRK 113 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~-~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~ 113 (302)
...++++.+++++|.+.+ +.+++|+.|...++.++... ....+.++||+|+++++.|..+...+...|++++.++++.
T Consensus 64 ~~~~fe~~lA~~~g~~~~-v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~G~~pv~vdvd~ 142 (438)
T PRK15407 64 FNDAFEKKLAEFLGVRYA-LLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQNGLVPVFVDVEL 142 (438)
T ss_pred hHHHHHHHHHHHhCCCeE-EEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecCC
Confidence 467899999999999864 55677887765655554210 0001225789999999999888777888999999999874
Q ss_pred -CCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCccccccc-CCCCccCCcEEEe
Q psy7357 114 -DGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGL-CRPGDYGSDVSHL 191 (302)
Q Consensus 114 -~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~-~~p~~~gaDiv~~ 191 (302)
++.+|+++++++++ ++|++|+++++ +|... |+++|.++|+++|+++|.|+++..+...- ...|.+| |+.++
T Consensus 143 ~~~~id~~~le~~i~---~~tkaVi~~~~--~G~p~-dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~~~G~~g-d~~~f 215 (438)
T PRK15407 143 PTYNIDASLLEAAVS---PKTKAIMIAHT--LGNPF-DLAAVKAFCDKHNLWLIEDNCDALGSTYDGRMTGTFG-DIATL 215 (438)
T ss_pred CcCCcCHHHHHHHcC---cCCeEEEEeCC--CCChh-hHHHHHHHHHHCCCEEEEECccchhhhcCCeeeeccC-ceEEE
Confidence 67899999999998 78999999874 57767 79999999999999999999986543221 2356676 99999
Q ss_pred CCCcccCCCCCCCCCcceeEEEeC
Q psy7357 192 NLHKTFCIPHGGGGPGMGPIGVKS 215 (302)
Q Consensus 192 ~~hK~l~~p~~~gGp~~G~l~~~~ 215 (302)
|.|.+- .... |.| |++++++
T Consensus 216 Sf~~~k--~~~~-geG-G~l~t~d 235 (438)
T PRK15407 216 SFYPAH--HITM-GEG-GAVFTND 235 (438)
T ss_pred eCCCCC--Cccc-cCc-eEEEECC
Confidence 876532 2222 444 9999874
No 158
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=99.70 E-value=1e-15 Score=147.39 Aligned_cols=176 Identities=16% Similarity=0.202 Sum_probs=125.5
Q ss_pred CCCCCCcccccHHHHHHHHHHHHHHHhCC--CeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH
Q psy7357 21 HPFIPQDQARGYEQLIGELETDLCEITGY--DKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA 97 (302)
Q Consensus 21 ~py~p~e~sqG~l~~~~e~~~~l~~l~g~--~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~ 97 (302)
+.|.+ .+|..++++.+.+.+.+-.|. +..++..++|+ +|...++.++. ++||+|++++|.|+.+..
T Consensus 88 ~~Y~~---~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al~l~~~~l~--------~~Gd~Vlv~~P~y~~y~~ 156 (430)
T PLN00145 88 NSYST---CVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEIIMSVLA--------QPGANILLPRPGYPLYEA 156 (430)
T ss_pred CCCCC---CccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHHHHHHHHhc--------CCCCEEEEcCCCCccHHH
Confidence 34554 578878877777777665554 34566666665 44433333322 689999999999988888
Q ss_pred HHHhCCCEEEEeecCC--CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCCc
Q psy7357 98 SAQMAGMSVEPVSVRK--DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGANM 172 (302)
Q Consensus 98 ~~~~~g~~v~~i~~~~--~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~~ 172 (302)
.+...|++++.+++.+ ++.+|+++++++++ +++++++++|| |++|.+.+ ++++|.++|+++|+++|+|.++.
T Consensus 157 ~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~ 233 (430)
T PLN00145 157 RAVFSGLEVRHFDLLPERGWEVDLEGVEALAD---ENTVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYD 233 (430)
T ss_pred HHHHcCCEEEEeeCCcccCCcCCHHHHHHHhC---cCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccch
Confidence 8888999999998743 46799999999998 78999999999 58998752 48899999999999999999863
Q ss_pred c-cccc--cCCCCccC--Cc-EEEeCCCcccCCCCCCCCCcceeEEEe
Q psy7357 173 N-AQVG--LCRPGDYG--SD-VSHLNLHKTFCIPHGGGGPGMGPIGVK 214 (302)
Q Consensus 173 ~-~~~~--~~~p~~~g--aD-iv~~~~hK~l~~p~~~gGp~~G~l~~~ 214 (302)
- .... ..+...+. .. |++.+..|+++.| |+|+||+++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~p----G~RlG~iv~~ 277 (430)
T PLN00145 234 HLTFGSKPFVPMGVFGEVAPVLTLGSISKRWVVP----GWRLGWIATC 277 (430)
T ss_pred hhccCCCCccchhhhcccCcEEEEeccccccCCC----CeeEEEEEEe
Confidence 1 1111 11111111 12 5555566766655 9999999984
No 159
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=99.69 E-value=3.5e-16 Score=148.24 Aligned_cols=174 Identities=17% Similarity=0.169 Sum_probs=131.3
Q ss_pred cccccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEE
Q psy7357 27 DQARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSV 106 (302)
Q Consensus 27 e~sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v 106 (302)
...+|..+++.++++.+++++|.+ ..+..++|+++..+++.++. +++|.|+++++.|+++...+...|.++
T Consensus 80 ~~~~G~~~l~~~l~~~la~~~g~~-~~i~~tsG~~a~~~~~~~l~--------~~gd~vi~~~~~~~~~~~~~~~~~~~~ 150 (397)
T PRK06939 80 RFICGTQDLHKELEEKLAKFLGTE-DAILYSSCFDANGGLFETLL--------GKEDAIISDALNHASIIDGVRLCKAKR 150 (397)
T ss_pred ccccCCcHHHHHHHHHHHHHhCCC-cEEEEcChHHHHHHHHHHhC--------CCCCEEEEEhhhhHHHHHHHHhcCCce
Confidence 346799999999999999999987 45667778776655544432 689999999999888777778888888
Q ss_pred EEeecCCCCCCCHHHHHHHHhcc---CCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccC---
Q psy7357 107 EPVSVRKDGTIDFSDLETKVKKN---KETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLC--- 179 (302)
Q Consensus 107 ~~i~~~~~g~iD~~~l~~~i~~~---~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~--- 179 (302)
+.++. .|++++++.++++ +.++++|+..+. |.+|.+. ++++|.++|+++|+++|+|+++..+.....
T Consensus 151 ~~~~~-----~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~-~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~ 224 (397)
T PRK06939 151 YRYAN-----NDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIA-PLPEICDLADKYDALVMVDDSHAVGFVGENGRG 224 (397)
T ss_pred EEeCC-----CCHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcC-CHHHHHHHHHHhCCEEEEECcccccCcCCCCCC
Confidence 87764 5899999988742 226777776543 5689888 799999999999999999999843321110
Q ss_pred ---CCC-ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 180 ---RPG-DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 180 ---~p~-~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
..+ ..+.|++++++||+|+ ||++|++++++++++.+
T Consensus 225 ~~~~~~~~~~~~i~~~S~sK~~~------g~r~G~v~~~~~~~~~l 264 (397)
T PRK06939 225 TVEHFGVMDRVDIITGTLGKALG------GASGGYTAGRKEVIDWL 264 (397)
T ss_pred HHHHcCCCCCCcEEEEECHHHhC------ccCceEEEeCHHHHHHH
Confidence 001 1246899999999884 46789999988776655
No 160
>PRK15029 arginine decarboxylase; Provisional
Probab=99.69 E-value=4.9e-16 Score=156.71 Aligned_cols=166 Identities=16% Similarity=0.133 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCC-
Q psy7357 35 LIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRK- 113 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~- 113 (302)
.+.|.|+.++++||.+.+.+.+++++.++.++++++. ++||+|++++..|-+....+.+.|+++++++...
T Consensus 206 ~I~eAq~~aA~~fgA~~t~FlvNGST~gn~a~i~a~~--------~~gd~Vlv~RN~HKSv~~al~L~ga~Pvyl~P~~~ 277 (755)
T PRK15029 206 AFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACM--------TDNDVVVVDRNCHKSIEQGLILTGAKPVYMVPSRN 277 (755)
T ss_pred HHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHHhc--------CCCCEEEeecccHHHHHHHHHHcCCeEEEeccccc
Confidence 5899999999999999988877777788878777765 7899999999999888888889999999997542
Q ss_pred -C---CCCC-----HHHHHHHHhccCCCeE--------EEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCcccc-
Q psy7357 114 -D---GTID-----FSDLETKVKKNKETLS--------CLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQ- 175 (302)
Q Consensus 114 -~---g~iD-----~~~l~~~i~~~~~~t~--------~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~- 175 (302)
. +.++ ++.++++|+++ |.++ +|++++|+++|++. |+++|+++||++|++++||+|+....
T Consensus 278 ~~Gi~~~i~~~~~~~e~i~~~l~~~-p~~k~~~~~~~~avvlt~PTY~Gv~~-di~~I~~~~h~~~~~llvDEAhGah~~ 355 (755)
T PRK15029 278 RYGIIGPIYPQEMQPETLQKKISES-PLTKDKAGQKPSYCVVTNCTYDGVCY-NAKEAQDLLEKTSDRLHFDEAWYGYAR 355 (755)
T ss_pred ccCCccCCCccccCHHHHHHHHHhC-chhhhccccCceEEEEECCCCcceee-CHHHHHHHHHhcCCeEEEECccccccc
Confidence 1 3455 99999999866 3344 89999999999999 89999999999999999999974221
Q ss_pred -cc-cC--CCC-----c-cCCc-EEEeCCCcccCCCCCCCCCcceeEEEeC
Q psy7357 176 -VG-LC--RPG-----D-YGSD-VSHLNLHKTFCIPHGGGGPGMGPIGVKS 215 (302)
Q Consensus 176 -~~-~~--~p~-----~-~gaD-iv~~~~hK~l~~p~~~gGp~~G~l~~~~ 215 (302)
.. ++ .+- . .|+| +++-|+||+|+.- -+..+|-++.
T Consensus 356 F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~al-----TQaS~LHv~~ 401 (755)
T PRK15029 356 FNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNAL-----SQASYIHVRE 401 (755)
T ss_pred cCccccccccccccccccCCCceEEEEchhhcccch-----hhhhhheeCC
Confidence 11 11 111 2 6899 9999999999732 1455666554
No 161
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=99.69 E-value=3.4e-16 Score=146.78 Aligned_cols=171 Identities=14% Similarity=0.118 Sum_probs=121.3
Q ss_pred HHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCC-CEEEEcCCCCcccHHHHHhCCCEEEEeecCCCC
Q psy7357 37 GELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHR-NVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDG 115 (302)
Q Consensus 37 ~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~-d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g 115 (302)
.++++.+++.+|++..++..++|+.. +..++++.+. +++ ++|++++|.|+.+...++..|++++.+|.++++
T Consensus 60 ~~l~~~~a~~~g~~~~~I~~~~Gs~e--~i~~~~~~~~-----~~g~~~vli~~P~y~~y~~~~~~~G~~~~~v~~~~~~ 132 (351)
T PRK01688 60 KAVIENYAAYAGVKPEQVLVSRGADE--GIELLIRAFC-----EPGKDAILYCPPTYGMYSVSAETIGVEIRTVPTLDNW 132 (351)
T ss_pred HHHHHHHHHHhCCCHHHEEEcCCHHH--HHHHHHHHhc-----CCCCCEEEEcCCCHHHHHHHHHHcCCEEEEeecCCCC
Confidence 68888999999999888888888752 2223333332 455 899999999988888888999999999998778
Q ss_pred CCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHH--hCCEEEEecCCcccccccCCC---CccCCcEE
Q psy7357 116 TIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHE--HGGQVYLDGANMNAQVGLCRP---GDYGSDVS 189 (302)
Q Consensus 116 ~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~--~g~llivD~a~~~~~~~~~~p---~~~gaDiv 189 (302)
.+|+++++++++ ++++|+++|| |+||.+. +.+++.++++. .+.++++|+++. .+....+. .....+++
T Consensus 133 ~~d~~~l~~~~~----~~~lv~l~nPnNPTG~~~-~~~~l~~l~~~~~~~~~vivDEay~-~f~~~~s~~~~~~~~~n~i 206 (351)
T PRK01688 133 QLDLPAIADNLD----GVKVVYVCSPNNPTGNLI-NPQDLRTLLELTRGKAIVVADEAYI-EFCPQASLAGWLAEYPHLV 206 (351)
T ss_pred CCCHHHHHHhcc----CCcEEEEeCCCCCCCCCC-CHHHHHHHHHhCCCCcEEEEECchh-hcCCCCChHHHHhhCCCEE
Confidence 899999999873 6789999999 5999987 56666666543 267899999862 11110010 01112444
Q ss_pred EeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 190 HLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 190 ~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
+.. ||++.+|+.|.|+|++++++++++.+..
T Consensus 207 v~r---SfSK~~glaGlRiGy~i~~~~~i~~l~~ 237 (351)
T PRK01688 207 ILR---TLSKAFALAGLRCGFTLANEEVINLLLK 237 (351)
T ss_pred EEe---cchHhhcCHHHHHhHHhCCHHHHHHHHh
Confidence 442 4444444558999999999887766543
No 162
>PLN02187 rooty/superroot1
Probab=99.69 E-value=9.9e-16 Score=148.79 Aligned_cols=175 Identities=16% Similarity=0.218 Sum_probs=127.0
Q ss_pred CCCCCcccccHHHHHHHHHHHHHHHhC--CCeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH
Q psy7357 22 PFIPQDQARGYEQLIGELETDLCEITG--YDKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS 98 (302)
Q Consensus 22 py~p~e~sqG~l~~~~e~~~~l~~l~g--~~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~ 98 (302)
.|.| .+|..++++.+.+.+.+-.| ++..++..++|+ ++...++.++. ++||+|++++|.|+.+...
T Consensus 103 ~Y~~---~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~--------~pGd~Vlv~~P~y~~y~~~ 171 (462)
T PLN02187 103 SYGP---GAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIEIVFESLA--------RPNANILLPRPGFPHYDAR 171 (462)
T ss_pred CCCC---CCChHHHHHHHHHHHHHhcCCCCCcccEEEeCCHHHHHHHHHHHhc--------CCCCEEEEeCCCCccHHHH
Confidence 4554 67888888888877776555 455677777776 44433333332 6899999999999988878
Q ss_pred HHhCCCEEEEeecCC--CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcc
Q psy7357 99 AQMAGMSVEPVSVRK--DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMN 173 (302)
Q Consensus 99 ~~~~g~~v~~i~~~~--~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~ 173 (302)
+...|.+++.++..+ +..+|+++|+++++ +++++|+++|| |++|.+- +++++|.++|+++|+++|+|.++.-
T Consensus 172 ~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~---~~~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~ 248 (462)
T PLN02187 172 AAYSGLEVRKFDLLPEKEWEIDLEGIEAIAD---ENTVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDR 248 (462)
T ss_pred HHHcCCEEEEEeCccccCCccCHHHHHHhcC---CCcEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccc
Confidence 889999999999853 46899999999987 78899999999 5999873 2589999999999999999998632
Q ss_pred -cccc--cCCCCccC--Cc-EEEeCCCcccCCCCCCCCCcceeEEEe
Q psy7357 174 -AQVG--LCRPGDYG--SD-VSHLNLHKTFCIPHGGGGPGMGPIGVK 214 (302)
Q Consensus 174 -~~~~--~~~p~~~g--aD-iv~~~~hK~l~~p~~~gGp~~G~l~~~ 214 (302)
.... ..+...+. .. |++.+..|+|+.| |+|+||+++.
T Consensus 249 l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f~~p----GlRiG~~v~~ 291 (462)
T PLN02187 249 TIFGDNPFVSMGKFASIVPVLTLAGISKGWVVP----GWKIGWIALN 291 (462)
T ss_pred cccCCCCceeHHHhccCCcEEEEecchhhcCCc----cceeEEEEec
Confidence 1111 10111111 12 4555567776655 9999999984
No 163
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=99.69 E-value=2.8e-15 Score=141.93 Aligned_cols=151 Identities=15% Similarity=0.138 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecC
Q psy7357 33 EQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVR 112 (302)
Q Consensus 33 l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~ 112 (302)
.+...++++.+++.+|.+.+ +..++|+.|...++.++. .++||+|+++++.|.++...+...|++++.++++
T Consensus 30 ~~~~~~~e~~la~~~g~~~~-v~~~sgt~al~~~l~~~~-------~~~Gd~Viv~~~t~~~~~~~~~~~G~~~v~~d~d 101 (375)
T PRK11706 30 GGFTRRCQQWLEQRFGSAKV-LLTPSCTAALEMAALLLD-------IQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIR 101 (375)
T ss_pred CHHHHHHHHHHHHHhCCCeE-EEECCHHHHHHHHHHHhC-------CCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecC
Confidence 35678899999999999764 345566665433333321 1679999999999888888888999999999998
Q ss_pred CCC-CCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCccccc-ccCCCCccCCcEEE
Q psy7357 113 KDG-TIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQV-GLCRPGDYGSDVSH 190 (302)
Q Consensus 113 ~~g-~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~-~~~~p~~~gaDiv~ 190 (302)
+++ .+|+++++++++ +++++|+++++ +|... |+++|.++|+++|+++|.|+++..+.. .-...+.+ .|+.+
T Consensus 102 ~~~~~~d~~~le~~i~---~~tk~i~~~~~--~G~~~-~~~~i~~la~~~~i~vIeD~a~a~g~~~~~~~~g~~-~~~~~ 174 (375)
T PRK11706 102 PDTMNIDETLIEAAIT---PKTRAIVPVHY--AGVAC-EMDTIMALAKKHNLFVVEDAAQGVMSTYKGRALGTI-GHIGC 174 (375)
T ss_pred CCcCCcCHHHHHHhcC---CCCeEEEEeCC--CCCcc-CHHHHHHHHHHcCCEEEEECccccccccCCeeeecC-cCEEE
Confidence 764 789999999998 78899998864 68877 799999999999999999999854431 11122333 48888
Q ss_pred eCCC--cccC
Q psy7357 191 LNLH--KTFC 198 (302)
Q Consensus 191 ~~~h--K~l~ 198 (302)
+|.| |.++
T Consensus 175 ~Sf~~~K~l~ 184 (375)
T PRK11706 175 FSFHETKNYT 184 (375)
T ss_pred EeCCCCcccc
Confidence 8877 8775
No 164
>PRK07550 hypothetical protein; Provisional
Probab=99.69 E-value=6.5e-16 Score=146.53 Aligned_cols=179 Identities=15% Similarity=0.186 Sum_probs=130.7
Q ss_pred cccHHHHHHHHHHHHHHHhCCC--eeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITGYD--KISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~--~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
.+|..++++.+.+.+.+..|.. ..++..++|+ ++...++.++. ++||+|+++++.|+.+...++..|++
T Consensus 66 ~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~--------~~gd~Vlv~~p~y~~~~~~~~~~g~~ 137 (386)
T PRK07550 66 VEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAMVTLA--------GAGDEVILPLPWYFNHKMWLDMLGIR 137 (386)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhc--------CCCCEEEEcCCCCcchHHHHHhcCCE
Confidence 5788899999999998887753 4566667776 44433333332 68999999999998888888899999
Q ss_pred EEEeecCC--CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCCcc-cccc-c
Q psy7357 106 VEPVSVRK--DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGANMN-AQVG-L 178 (302)
Q Consensus 106 v~~i~~~~--~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~~~-~~~~-~ 178 (302)
++.++.++ +..+|+++++++++ +++++|++++| |++|...+ ++++|+++|+++|+++|+|.++.. .... .
T Consensus 138 ~~~v~~~~~~~~~~~~~~l~~~~~---~~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~ 214 (386)
T PRK07550 138 PVYLPCDEGPGLLPDPAAAEALIT---PRTRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGA 214 (386)
T ss_pred EEEEecCCCcCCCCCHHHHHHHhc---ccCcEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCC
Confidence 99999974 34679999999998 67888999999 48997631 589999999999999999998631 1000 0
Q ss_pred C-CCC---ccCC-cEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 179 C-RPG---DYGS-DVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 179 ~-~p~---~~ga-Div~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
. ... +.+. .+++.+.+|+|+.| |.|+|++++++++++.+.
T Consensus 215 ~~~~~~~~~~~~~~i~~~S~SK~~g~~----G~RiG~i~~~~~~~~~~~ 259 (386)
T PRK07550 215 PHDLFADPDWDDTLVHLYSFSKSYALT----GHRVGAVVASPARIAEIE 259 (386)
T ss_pred CcchhhCCCccccEEEEecchhhccCc----ccceEeeecCHHHHHHHH
Confidence 0 010 1122 25566778877654 789999999876665443
No 165
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=99.69 E-value=1.2e-15 Score=144.88 Aligned_cols=165 Identities=17% Similarity=0.166 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH-H---HHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA-S---AQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~-~---~~~~g~~v~~i 109 (302)
...++++++++++.|.+. .+...+|..+...++.++. ++||+|+++++.|+.+.. . ....+.++..+
T Consensus 52 pt~~~L~~~lA~l~g~~~-~i~~~sg~~Ai~~~l~~l~--------~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi~v~~v 122 (386)
T PRK08045 52 PTRDVVQRALAELEGGAG-AVLTNTGMSAIHLVTTVFL--------KPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFV 122 (386)
T ss_pred ccHHHHHHHHHHHhCCCe-EEEECCHHHHHHHHHHHHc--------CCCCEEEEcCCCcHHHHHHHHHHHhhCCeEEEEe
Confidence 467889999999999754 4455666665544444432 689999999999875332 2 22345577666
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
+ ..|+++++++++ +++++|++++| |++|.+. |+++|.++||++|+++++|+++.... ...|.++++|+
T Consensus 123 d-----~~d~e~l~~~l~---~~tklV~l~sP~NPtG~v~-di~~I~~ia~~~g~~vivDeay~~~~--~~~pl~~gaDi 191 (386)
T PRK08045 123 D-----QGDEQALRAALA---EKPKLVLVESPSNPLLRVV-DIAKICHLAREAGAVSVVDNTFLSPA--LQNPLALGADL 191 (386)
T ss_pred C-----CCCHHHHHHhcc---cCCeEEEEECCCCCCCEec-CHHHHHHHHHHcCCEEEEECCCCccc--cCCchhhCCCE
Confidence 4 268999999997 78999999999 5899998 89999999999999999999874332 34677889999
Q ss_pred EEeCCCcccCCCCCCCCCcceeEEEe-CCCCCCC
Q psy7357 189 SHLNLHKTFCIPHGGGGPGMGPIGVK-SHLAPFL 221 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~l 221 (302)
++.+++|+++++ ++-..|+++++ +++.+++
T Consensus 192 vv~S~tK~l~G~---~d~~~G~vi~~~~~~~~~l 222 (386)
T PRK08045 192 VLHSCTKYLNGH---SDVVAGVVIAKDPDVVTEL 222 (386)
T ss_pred EEeecceeccCC---CCceeEEEEeCcHHHHHHH
Confidence 999999999733 22336877775 4554443
No 166
>PRK06460 hypothetical protein; Provisional
Probab=99.69 E-value=6.4e-16 Score=146.35 Aligned_cols=171 Identities=14% Similarity=0.122 Sum_probs=126.0
Q ss_pred cccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCc-ccH---HHHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHG-TNP---ASAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg-~~~---~~~~~~g~ 104 (302)
++-......++++.+++++|.+.+ +..++|..+..+++.++. ++||+|+++.+.|+ ++. ..++..|.
T Consensus 40 ~r~~~p~~~~L~~~lA~l~g~~~~-v~~~sG~~ai~~~l~al~--------~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~ 110 (376)
T PRK06460 40 SREANPTVLELTKKIVELENAEMG-VAFSSGMGAISTTALALL--------KPGNSVLVHRDMFGRSYRFFTDYLKNWGV 110 (376)
T ss_pred eCCCCccHHHHHHHHHHHhCCCcE-EEeCCHHHHHHHHHHHHh--------CCCCEEEEecCCcCcHHHHHHHHHHhhCc
Confidence 444456788999999999999765 445677766544444443 68999999987664 332 34567899
Q ss_pred EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCc
Q psy7357 105 SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGD 183 (302)
Q Consensus 105 ~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~ 183 (302)
+++.++.+ |.+.+++.++ +++++|++++| |++|.+. |+++|+++|+++|+++++|+++.... ...+..
T Consensus 111 ~v~~~~~~-----~~~~l~~~~~---~~tklV~l~sp~NPtG~v~-d~~~I~~la~~~g~~vivDea~~~~~--~~~~l~ 179 (376)
T PRK06460 111 NVDASNPG-----SDNIIEKAKS---KRYDVVFVENITNPLLRVV-DITELSKVCKENGSILIVDATFSTPI--NQKPLE 179 (376)
T ss_pred EEEEECCC-----CHHHHHHhcC---CCceEEEEECCCCCCCccc-CHHHHHHHHHHcCCEEEEECCcCccc--cCChhh
Confidence 99888764 2344555554 78999999999 5899998 89999999999999999999874322 223445
Q ss_pred cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 184 YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 184 ~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+++|+++.+++|+|+. .++.++|++++++++++++.
T Consensus 180 ~~~divv~S~sK~l~G---~~~~~~G~~~~~~~l~~~l~ 215 (376)
T PRK06460 180 LGADIVVHSASKFLAG---HNDVIAGLAAGYGKLLNVID 215 (376)
T ss_pred cCCCEEEeecceeccC---CCCceEEEEecCHHHHHHHH
Confidence 6799999999999862 23356899998887766553
No 167
>PRK03321 putative aminotransferase; Provisional
Probab=99.69 E-value=4.8e-16 Score=145.53 Aligned_cols=172 Identities=15% Similarity=0.164 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCC
Q psy7357 36 IGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDG 115 (302)
Q Consensus 36 ~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g 115 (302)
..++++.+++++|++..++..++|++.... .+++..+ ++||+|+++.+.|..+...++..|.+++.+|.++++
T Consensus 59 ~~~lr~~ia~~~~~~~~~I~~~~G~~~~l~--~~~~~~~-----~~gd~Vli~~p~y~~~~~~~~~~g~~~~~v~~~~~~ 131 (352)
T PRK03321 59 AVELRAALAEHLGVPPEHVAVGCGSVALCQ--QLVQATA-----GPGDEVIFAWRSFEAYPILVQVAGATPVQVPLTPDH 131 (352)
T ss_pred HHHHHHHHHHHhCcCHHHEEECCCHHHHHH--HHHHHhc-----CCCCEEEeCCCCHHHHHHHHHHcCCEEEEccCCCCC
Confidence 466788899999988767777888753212 1222221 679999999888777777788899999999997678
Q ss_pred CCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHH--hCCEEEEecCCc-ccccccC-CC---CccCCc
Q psy7357 116 TIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHE--HGGQVYLDGANM-NAQVGLC-RP---GDYGSD 187 (302)
Q Consensus 116 ~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~--~g~llivD~a~~-~~~~~~~-~p---~~~gaD 187 (302)
.+|+++++++++ +++++|++++| |++|.+. +.+++.++|++ +|+++++|+++. ....... .+ .+...+
T Consensus 132 ~~~~~~l~~~~~---~~~~~v~l~~p~NPtG~~~-~~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 207 (352)
T PRK03321 132 THDLDAMAAAIT---DRTRLIFVCNPNNPTGTVV-TPAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHPN 207 (352)
T ss_pred CCCHHHHHHhhc---cCCCEEEEeCCCCCcCCCc-CHHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhCCC
Confidence 899999999997 68889999999 5999998 79999999987 589999999863 1111110 10 011124
Q ss_pred E-EEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 188 V-SHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 188 i-v~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+ ++.+..|+|+.| |.|+|++++++++++.+.
T Consensus 208 vi~~~S~SK~~g~~----GlRiG~~v~~~~~~~~~~ 239 (352)
T PRK03321 208 VVVLRTFSKAYGLA----GLRVGYAVGHPEVIAALR 239 (352)
T ss_pred EEEEecchHHhhhH----HHhhhhhcCCHHHHHHHH
Confidence 4 445566766544 789999999887776654
No 168
>PRK08636 aspartate aminotransferase; Provisional
Probab=99.69 E-value=7.9e-16 Score=146.89 Aligned_cols=182 Identities=16% Similarity=0.162 Sum_probs=131.4
Q ss_pred cccHHHHHHHHHHHHHHHhCCC--ee-eEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYD--KI-SFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~--~~-~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~ 104 (302)
.+|..++++.+.+++.+.+|.+ .. ++..++|++ +...++.++. ++||.|++++|.|+.+...++..|.
T Consensus 70 ~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~--------~~gd~Vlv~~P~y~~~~~~~~~~g~ 141 (403)
T PRK08636 70 SKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQAIT--------NPGDVAIVPDPAYPIHSQAFILAGG 141 (403)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHHHHHHHHHhC--------CCCCEEEEcCCCCcchHHHHHhcCC
Confidence 6899999999999998888854 34 577788874 3323333322 6899999999999988888899999
Q ss_pred EEEEeecCC--CCCCCHHH----HHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcc-c
Q psy7357 105 SVEPVSVRK--DGTIDFSD----LETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMN-A 174 (302)
Q Consensus 105 ~v~~i~~~~--~g~iD~~~----l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~-~ 174 (302)
+++.+|++. +..+|+++ ++++++++++++++|++++| ||+|.+- +.+++|.++|+++++++|.|.++.. .
T Consensus 142 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~ 221 (403)
T PRK08636 142 NVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADIT 221 (403)
T ss_pred EEEEEeccccccCccChhhhhhHHHHHHhhccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhc
Confidence 999999853 35788875 46666554578999999998 6999872 2589999999999999999998631 1
Q ss_pred cccc--CCCCcc--CCc--EEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 175 QVGL--CRPGDY--GSD--VSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 175 ~~~~--~~p~~~--gaD--iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
.... .+.... ..| |.+.+..|+|+.| |.|+|++++++++++.+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~----GlRiG~iv~~~~li~~~~ 271 (403)
T PRK08636 222 FDGYKTPSILEVEGAKDVAVESYTLSKSYNMA----GWRVGFVVGNKKLVGALK 271 (403)
T ss_pred cCCCCCCChhcCCCccccEEEEEecccccCCc----cceeeeeeCCHHHHHHHH
Confidence 1111 111111 123 3456677777655 899999999887766543
No 169
>PLN02880 tyrosine decarboxylase
Probab=99.69 E-value=3.5e-16 Score=152.69 Aligned_cols=183 Identities=13% Similarity=0.061 Sum_probs=135.2
Q ss_pred cccccHHHHHHHHHHHHHHHhCCCee--------eEeeCchHHHHHHHHHHHHHHH-HhhcCC--CCCEEEEcCCCCccc
Q psy7357 27 DQARGYEQLIGELETDLCEITGYDKI--------SFQPNSGAQGEYAGLRAIQCYH-QAQDAH--HRNVCLIPVSAHGTN 95 (302)
Q Consensus 27 e~sqG~l~~~~e~~~~l~~l~g~~~~--------~~~~~~Ga~a~~a~l~a~~~~~-~~~g~~--~~d~Vlv~~~~hg~~ 95 (302)
+.+.+..++-.++.+++++++|++.. -+..++|+++++.++.+.|... +..+.. ++-+|++|+..|.+.
T Consensus 115 ~~sp~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~Sv 194 (490)
T PLN02880 115 ITSPAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSAL 194 (490)
T ss_pred ccCcccHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHHH
Confidence 45677888889999999999999853 3445566788777777777532 222211 233677888899888
Q ss_pred HHHHHhCCCE---EEEeecCC--CCCCCHHHHHHHHhcc---CCCeEEEEEecCC-CceeccccHHHHHHHHHHhCCEEE
Q psy7357 96 PASAQMAGMS---VEPVSVRK--DGTIDFSDLETKVKKN---KETLSCLMITYPS-TFGVFEENITDVCELIHEHGGQVY 166 (302)
Q Consensus 96 ~~~~~~~g~~---v~~i~~~~--~g~iD~~~l~~~i~~~---~~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~g~lli 166 (302)
...+...|+. ++.||+|+ ++.+|+++|+++|++. ...+.+|+.+-.+ .+|.+. |+++|+++|+++|+++|
T Consensus 195 ~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiD-pl~eI~~i~~~~~iwlH 273 (490)
T PLN02880 195 QKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVD-PLLELGKIAKSNGMWFH 273 (490)
T ss_pred HHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccC-cHHHHHHHHHHcCCEEE
Confidence 8888888884 88999975 5689999999999742 1234566666654 689999 79999999999999999
Q ss_pred EecCCcccccccC-----CCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeC
Q psy7357 167 LDGANMNAQVGLC-----RPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKS 215 (302)
Q Consensus 167 vD~a~~~~~~~~~-----~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~ 215 (302)
||+|+..+..... -.+-.++|.++.+.|||+..|+ +.|++++++
T Consensus 274 VDaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~-----~~g~llvr~ 322 (490)
T PLN02880 274 VDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNF-----DCSLLWVKD 322 (490)
T ss_pred EehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCCc-----cEEEEEEeC
Confidence 9998743322110 1233578999999999999774 578899884
No 170
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=99.69 E-value=8.2e-16 Score=145.12 Aligned_cols=169 Identities=13% Similarity=0.126 Sum_probs=118.3
Q ss_pred HHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCCC
Q psy7357 37 GELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGT 116 (302)
Q Consensus 37 ~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g~ 116 (302)
.++++.+++.+|++..++..++|++. +...+++.+. ++||+|++++|.|+.+...++..|.+++.+|.+ ++.
T Consensus 67 ~~Lr~aia~~~~~~~~~I~vt~Gs~e--~i~~~~~~l~-----~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~-~~~ 138 (366)
T PRK01533 67 TTLRQTIANKLHVKMEQVLCGSGLDE--VIQIISRAVL-----KAGDNIVTAGATFPQYRHHAIIEGCEVKEVALN-NGV 138 (366)
T ss_pred HHHHHHHHHHhCCCcceEEECCCHHH--HHHHHHHHhc-----CCCCEEEEcCCcHHHHHHHHHHcCCEEEEeecC-CCC
Confidence 46778888888998888888888742 2222333222 688999999999888888889999999999985 456
Q ss_pred CCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHH---HHHhCCEEEEecCCcc-ccc-ccCC----CCccCC
Q psy7357 117 IDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCEL---IHEHGGQVYLDGANMN-AQV-GLCR----PGDYGS 186 (302)
Q Consensus 117 iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~i---a~~~g~llivD~a~~~-~~~-~~~~----p~~~ga 186 (302)
+|+++|+++++ +++++|+++|| |+||.+. +.+++.++ |++++ ++++|.++.- ... ...+ .....-
T Consensus 139 ~d~~~l~~~~~---~~~~~v~i~~P~NPTG~~~-~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~ 213 (366)
T PRK01533 139 YDLDEISSVVD---NDTKIVWICNPNNPTGTYV-NDRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKN 213 (366)
T ss_pred cCHHHHHHHhC---cCCcEEEEeCCCCCCCCCc-CHHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCC
Confidence 99999999987 67899999999 5999986 45555554 44555 6678988631 100 0000 011112
Q ss_pred cEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 187 DVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 187 Div~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
-|++.|..|+|+. .|.|+||+++++++++.+.
T Consensus 214 vi~~~SfSK~~~l----~GlRiG~~i~~~~~~~~l~ 245 (366)
T PRK01533 214 ILVLRTFSKAYGL----ASFRVGYAVGHEELIEKLN 245 (366)
T ss_pred EEEEeCchHHhcC----hHHHHhHHhCCHHHHHHHH
Confidence 3556656666654 4899999999887766553
No 171
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=99.68 E-value=1.3e-15 Score=142.53 Aligned_cols=164 Identities=17% Similarity=0.211 Sum_probs=122.6
Q ss_pred HHHHHHHHHHhCCCeeeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCC
Q psy7357 37 GELETDLCEITGYDKISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDG 115 (302)
Q Consensus 37 ~e~~~~l~~l~g~~~~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g 115 (302)
.++++.+++.++++..++..++|++ +. .++++.+. ++||+|++++|.|+.+...++..|++++.+|.++++
T Consensus 63 ~~lr~aia~~~~~~~~~I~it~G~~~al---~~~~~~l~-----~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~ 134 (353)
T PRK05387 63 DALRQAIAAYYGLDPEQVFVGNGSDEVL---AHAFLAFF-----NHDRPLLFPDITYSFYPVYAGLYGIPYEEIPLDDDF 134 (353)
T ss_pred HHHHHHHHHHhCCCHHHEEEcCCHHHHH---HHHHHHhc-----CCCCEEEEeCCCHHHHHHHHHHcCCEEEEeecCCCC
Confidence 5788889999998887788888874 33 22333322 689999999999887888888999999999998778
Q ss_pred CCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHh-CCEEEEecCCcccccccC--C-CCccCCcEEE
Q psy7357 116 TIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEH-GGQVYLDGANMNAQVGLC--R-PGDYGSDVSH 190 (302)
Q Consensus 116 ~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~-g~llivD~a~~~~~~~~~--~-p~~~gaDiv~ 190 (302)
.+|++++++ ++++|+++|| |++|.+. +.+++.++++.+ ++++++|.++. .+..-. . .....-.+++
T Consensus 135 ~~d~~~l~~-------~~~~v~~~~P~NPtG~~~-~~~~~~~l~~~~~~~~livDe~y~-~~~~~~~~~~~~~~~~~i~~ 205 (353)
T PRK05387 135 SIDVEDYLR-------PNGGIIFPNPNAPTGIAL-PLAEIERILAANPDSVVVIDEAYV-DFGGESAIPLIDRYPNLLVV 205 (353)
T ss_pred CCCHHHHHh-------cCCEEEEeCCCCCCCCCC-CHHHHHHHHHhCCCcEEEEeCccc-ccCCcchHHHHhhCCCEEEE
Confidence 899998863 2367889999 5999998 689999998875 99999999863 121110 0 0112235777
Q ss_pred eCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 191 LNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 191 ~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
.+.+|+|+.| |.|+|++++++++.+.+
T Consensus 206 ~S~SK~~~~~----GlR~G~~~~~~~~~~~l 232 (353)
T PRK05387 206 QTFSKSRSLA----GLRVGFAIGHPELIEAL 232 (353)
T ss_pred EehhHhhcch----hhhceeeecCHHHHHHH
Confidence 7777877655 89999999987766554
No 172
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.68 E-value=1.3e-15 Score=146.46 Aligned_cols=147 Identities=18% Similarity=0.195 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHH----hCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQ----MAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~----~~g~~v~~i 109 (302)
....++++.++++.|.+.+ +...+|..|..+++.++. +++|+|+++.+.|+....... ..|+++.++
T Consensus 58 pt~~~Le~~lA~l~g~~~~-l~~ssG~~Ai~~al~al~--------~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~ 128 (425)
T PRK06084 58 PTNDVLEQRVAALEGGVGA-LAVASGMAAITYAIQTIA--------EAGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFA 128 (425)
T ss_pred chHHHHHHHHHHHhCCCce-eEehhHHHHHHHHHHHHh--------CCCCEEEEeCCCcchHHHHHHHhcccceeEEEEE
Confidence 4467899999999997654 456778877655555544 678999999888774433322 356777766
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
+. .|+++++++++ +++++|++++| |++|.+. |+++|.++||++|+++++|+++.... ...|.++|+|+
T Consensus 129 d~-----~d~e~le~ai~---~~tklV~lesp~NPtG~v~-dl~~I~~la~~~~i~vVvD~a~a~~~--~~~p~~~gaDi 197 (425)
T PRK06084 129 AH-----DDIAALEALID---ERTKAVFCESIGNPAGNII-DIQALADAAHRHGVPLIVDNTVATPV--LCRPFEHGADI 197 (425)
T ss_pred CC-----CCHHHHHHHhc---cCCcEEEEeCCCCCCCeec-CHHHHHHHHHHcCCEEEEECCCcccc--cCChhhcCCCE
Confidence 64 48999999998 78999999998 6999998 89999999999999999999875332 34677889999
Q ss_pred EEeCCCcccCCC
Q psy7357 189 SHLNLHKTFCIP 200 (302)
Q Consensus 189 v~~~~hK~l~~p 200 (302)
++.|++|+|+.+
T Consensus 198 vv~S~tK~l~G~ 209 (425)
T PRK06084 198 VVHSLTKYIGGH 209 (425)
T ss_pred EEECchhccccc
Confidence 999999999854
No 173
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=99.68 E-value=1.7e-15 Score=143.78 Aligned_cols=165 Identities=19% Similarity=0.177 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH----HHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS----AQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~----~~~~g~~v~~i 109 (302)
....++++.++++.|.+.+ +...+|..|..+++.++. ++||+|+++++.|+.+... ....++++..+
T Consensus 51 p~~~~le~~lA~l~g~~~v-~~~~gg~~Ai~~~l~all--------~~GD~Vl~~~p~y~~~~~~~~~~~~~~~~~v~~~ 121 (382)
T TIGR02080 51 PTRDLLQQALAELEGGAGA-VVTNTGMSAIHLVTTALL--------GPDDLLVAPHDCYGGTYRLLNALAKKGCFRVLFV 121 (382)
T ss_pred chHHHHHHHHHHHhCCCcE-EEEcCHHHHHHHHHHHHc--------CCCCEEEEcCCCcHHHHHHHHHHHhhcCeEEEEE
Confidence 4578899999999996543 445556666645554443 6899999999998754332 23345677665
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
+. .|+++++++++ ++|++|++++| |++|.+. |+++|+++||++|+++++|+++.... ...|-..|+|+
T Consensus 122 d~-----~d~~~l~~ai~---~~tklV~l~~p~NPtG~~~-dl~~I~~la~~~g~~vvvD~a~~~~~--~~~pl~~gaDi 190 (382)
T TIGR02080 122 DQ-----GDEQALRAALA---QKPKLVLIETPSNPLLRVV-DIAKICHLAKAVGAVVVVDNTFLSPA--LQNPLALGADL 190 (382)
T ss_pred CC-----CCHHHHHHhcC---cCceEEEEECCCCCCCEec-CHHHHHHHHHHcCCEEEEECCCcccc--cCCchhhCCCE
Confidence 42 48999999998 78999999999 5899998 89999999999999999999874332 23455678999
Q ss_pred EEeCCCcccCCCCCCCCCcceeEEEe-CCCCCCC
Q psy7357 189 SHLNLHKTFCIPHGGGGPGMGPIGVK-SHLAPFL 221 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~l 221 (302)
++.+++|+++.+ ++...|++.++ +++.+++
T Consensus 191 vv~S~sK~l~G~---~~~~~G~i~~~~~~~~~~l 221 (382)
T TIGR02080 191 VLHSCTKYLNGH---SDVIAGAVIAKDPQVAEEL 221 (382)
T ss_pred EEeecceeccCC---CCceeEEEEeCCHHHHHHH
Confidence 999999998743 23458888775 4554444
No 174
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=99.68 E-value=2.8e-15 Score=143.81 Aligned_cols=178 Identities=13% Similarity=0.095 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHHHhCCC---eeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEE
Q psy7357 32 YEQLIGELETDLCEITGYD---KISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVE 107 (302)
Q Consensus 32 ~l~~~~e~~~~l~~l~g~~---~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~ 107 (302)
...+..+++..+++++|++ .+.+ ..+|+ .+...++.+++. ++ .+++.|++|...|.+....+...|++++
T Consensus 103 ~~~l~~~~e~~~~~~~G~~~~~~a~~-v~~~Tg~al~laL~alr~----~~-~~gd~VI~p~~th~S~~kAi~~~G~~pv 176 (444)
T TIGR03531 103 LYKLTNKLVKDFLKLLGLRSIKSAFV-VPLATGMSLSLCLSALRH----KR-PKAKYVIWPRIDQKSCIKAISTAGFEPR 176 (444)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEE-ECCHHHHHHHHHHHHcCC----cC-CCCCEEEEECcChHHHHHHHHHcCCeEE
Confidence 5678899999999999998 3333 33344 334333333321 00 1578999999988877778889999999
Q ss_pred Eeec--C-CCCCCCHHHHHHHHhccCCCeEEEEEecCCCce--eccccHHHHHHHHHHhCCEEEEecCCcccccc---cC
Q psy7357 108 PVSV--R-KDGTIDFSDLETKVKKNKETLSCLMITYPSTFG--VFEENITDVCELIHEHGGQVYLDGANMNAQVG---LC 179 (302)
Q Consensus 108 ~i~~--~-~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G--~~~~di~~I~~ia~~~g~llivD~a~~~~~~~---~~ 179 (302)
.+++ + ++..+|+++|+++|++..+++.++++.+|++++ ... |+++|+++|+++|+++|+|+|+...... +.
T Consensus 177 ~Vd~~~d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~d-dL~eIa~la~k~gI~lIvDaAyg~~~~~~~~~~ 255 (444)
T TIGR03531 177 VIETVLDGDELTTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPD-DIEEIAKICANYDIPHIVNNAYGLQSNKYMELI 255 (444)
T ss_pred EeeeeecCcCCCcCHHHHHHHHHhccCCCEEEEEEcCCcCCCcchh-CHHHHHHHHHHcCCEEEEECcCcCcChhhhhhh
Confidence 9995 3 357899999999998432266777788887544 566 8999999999999999999998532111 11
Q ss_pred CC-Ccc-CCcEEEeCCCcccCCCCCCCCCcceeEEEe-CCCCCCC
Q psy7357 180 RP-GDY-GSDVSHLNLHKTFCIPHGGGGPGMGPIGVK-SHLAPFL 221 (302)
Q Consensus 180 ~p-~~~-gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~l 221 (302)
.+ ... .+|++++++||+|..| |+ .|+++++ +++.+.+
T Consensus 256 ~~g~~~Grad~vv~s~hK~l~~p----g~-Gg~I~~~d~el~~~i 295 (444)
T TIGR03531 256 NKAIKVGRVDAVVSSTDKNFMVP----VG-GAIIYSFDENFIQEI 295 (444)
T ss_pred hccccccCCCeEEEeCccCCCCC----CC-EEEEEECCHHHHHHH
Confidence 11 223 3799999999999876 22 5667674 4555544
No 175
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=99.68 E-value=2.6e-15 Score=141.75 Aligned_cols=169 Identities=17% Similarity=0.158 Sum_probs=118.6
Q ss_pred HHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCCCC
Q psy7357 38 ELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTI 117 (302)
Q Consensus 38 e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g~i 117 (302)
++++.+++.+|++..++..++|++. +....++.+. +++|.|+++++.|+.+...++..|++++.+|.++++.+
T Consensus 75 ~lr~~ia~~~~~~~~~i~~t~G~~~--~l~~~~~~~~-----~~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~ 147 (371)
T PRK05166 75 ALREAIAARTGVPADRIILGNGSED--LIAVICRAVL-----RPGDRVVTLYPSFPLHEDYPTMMGARVERVTVTPDLGF 147 (371)
T ss_pred HHHHHHHHHhCcCHHHEEEcCCHHH--HHHHHHHHhc-----CCCCEEEEcCCChHHHHHHHHHcCCeEEEeecCCCCCC
Confidence 6888899999998777878888742 2122222221 68899999999988777788899999999999877889
Q ss_pred CHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHH--hCCEEEEecCCcc-cccc-cCCC----CccCCc-
Q psy7357 118 DFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHE--HGGQVYLDGANMN-AQVG-LCRP----GDYGSD- 187 (302)
Q Consensus 118 D~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~--~g~llivD~a~~~-~~~~-~~~p----~~~gaD- 187 (302)
|++++++.++ +++++|+++|| |+||.+. +.+++.++++. .++++++|.++.- .... ..++ .+.+.+
T Consensus 148 ~~~~l~~~~~---~~~~~v~l~~p~NPtG~~~-~~~~~~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~v 223 (371)
T PRK05166 148 DLDALCAAVA---RAPRMLMFSNPSNPVGSWL-TADQLARVLDATPPETLIVVDEAYAEYAAGDDYPSALTLLKARGLPW 223 (371)
T ss_pred CHHHHHHhhh---cCCCEEEEeCCCCCCCCCC-CHHHHHHHHHhCCCCcEEEEECcHHHhcCCcCcccHHHHHhhcCCCE
Confidence 9999999997 67788999999 5999987 56666666654 4788999998631 1111 0010 011123
Q ss_pred EEEeCCCcccCCCCCCCCCcceeEEE-eCCCCCCC
Q psy7357 188 VSHLNLHKTFCIPHGGGGPGMGPIGV-KSHLAPFL 221 (302)
Q Consensus 188 iv~~~~hK~l~~p~~~gGp~~G~l~~-~~~l~~~l 221 (302)
|++.+..|+|+ +.|.|+|++++ ++++.+.+
T Consensus 224 i~i~SfSK~~~----l~GlRiG~~i~~~~~l~~~~ 254 (371)
T PRK05166 224 IVLRTFSKAYG----LAGLRVGYGLVSDPELVGLL 254 (371)
T ss_pred EEEeechHhhh----cchhheeeeecCCHHHHHHH
Confidence 45555556555 45899999876 45555444
No 176
>PRK06348 aspartate aminotransferase; Provisional
Probab=99.67 E-value=1.3e-15 Score=144.57 Aligned_cols=178 Identities=14% Similarity=0.154 Sum_probs=129.0
Q ss_pred cccHHHHHHHHHHHHHHHhCC--CeeeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITGY--DKISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~--~~~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
.+|..++++.+.+.+.+..|. +..++..++|++ +...++.++. ++||+|+++++.|+.+...++..|.+
T Consensus 65 ~~G~~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~--------~~gd~vlv~~p~y~~~~~~~~~~g~~ 136 (384)
T PRK06348 65 SGGDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLALQSIL--------DPGDEVIIHEPYFTPYKDQIEMVGGK 136 (384)
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCChhhEEEcCChHHHHHHHHHHhc--------CCCCEEEEeCCCCcchHHHHHHcCCE
Confidence 678888888888888776664 456777777774 3323333322 68899999999998888888889999
Q ss_pred EEEeecCC--CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcc-cccc-c
Q psy7357 106 VEPVSVRK--DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMN-AQVG-L 178 (302)
Q Consensus 106 v~~i~~~~--~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~-~~~~-~ 178 (302)
++.+|.++ +..+|+++|+++++ +++++|++++| |++|.+- +++++|.++|+++|++++.|.++.- .... .
T Consensus 137 ~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~ 213 (384)
T PRK06348 137 PIILETYEEDGFQINVKKLEALIT---SKTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDF 213 (384)
T ss_pred EEEecCCcCcCCcCCHHHHHHhhC---cCccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCc
Confidence 99998743 34689999999987 67889999999 5899873 2589999999999999999998631 1111 0
Q ss_pred CC---CCc-cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 179 CR---PGD-YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 179 ~~---p~~-~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
.+ ... .+-.|++.+..|+++.| |.|+|++.+++++.+.+
T Consensus 214 ~~~~~~~~~~~~vi~~~SfSK~~~l~----GlRiG~~v~~~~~~~~~ 256 (384)
T PRK06348 214 VPMATLAGMPERTITFGSFSKDFAMT----GWRIGYVIAPDYIIETA 256 (384)
T ss_pred cchhhcCCCcCcEEEEecchhccCCc----cccceeeecCHHHHHHH
Confidence 01 111 12235666667766644 89999999988776654
No 177
>PLN02656 tyrosine transaminase
Probab=99.67 E-value=2.4e-15 Score=143.92 Aligned_cols=171 Identities=18% Similarity=0.165 Sum_probs=122.8
Q ss_pred cccHHHHHHHHHHHHHHHhCC--CeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITGY--DKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~--~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
.+|..++++.+.+.+.+..|. +..++..++|+ ++...++.++. ++||+|+++++.|+.+...+...|++
T Consensus 72 ~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~--------~~gd~Vlv~~p~y~~~~~~~~~~g~~ 143 (409)
T PLN02656 72 TVGLPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQAIDVALSMLA--------RPGANILLPRPGFPIYELCAAFRHLE 143 (409)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCcccEEEeCChHHHHHHHHHHHh--------CCCCeEEEeCCCCCcHHHHHHHcCCE
Confidence 578888888888877776554 44566666676 43323333322 68999999999998887778889999
Q ss_pred EEEeecCC--CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCc-ccccccC
Q psy7357 106 VEPVSVRK--DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANM-NAQVGLC 179 (302)
Q Consensus 106 v~~i~~~~--~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~-~~~~~~~ 179 (302)
++.+|+++ ++.+|+++++++++ +++++|++++| |++|.+- +++++|.++|+++|+++|+|.++. .......
T Consensus 144 ~~~i~~~~~~~~~~d~~~l~~~~~---~~~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~ 220 (409)
T PLN02656 144 VRYVDLLPEKGWEVDLDAVEALAD---QNTVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNP 220 (409)
T ss_pred EEEEeCCCcCCCCCCHHHHHHHhc---cCceEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCC
Confidence 99999853 34799999999987 77899999999 5999872 269999999999999999999863 1111100
Q ss_pred -CC-CccC--Cc-EEEeCCCcccCCCCCCCCCcceeEEEe
Q psy7357 180 -RP-GDYG--SD-VSHLNLHKTFCIPHGGGGPGMGPIGVK 214 (302)
Q Consensus 180 -~p-~~~g--aD-iv~~~~hK~l~~p~~~gGp~~G~l~~~ 214 (302)
.+ .... .. |++.|..|+|+.| |.|+|+++++
T Consensus 221 ~~~~~~~~~~~~vi~~~SfSK~f~~p----GlRiG~~i~~ 256 (409)
T PLN02656 221 FVPMGVFGSIVPVLTLGSLSKRWIVP----GWRLGWFVTT 256 (409)
T ss_pred cccHHHhcccCcEEEEcccchhccCc----ceeEEEEEEe
Confidence 11 1111 12 4555567776655 9999999984
No 178
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=99.67 E-value=2.2e-15 Score=141.81 Aligned_cols=169 Identities=18% Similarity=0.122 Sum_probs=121.7
Q ss_pred HHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCCC
Q psy7357 37 GELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGT 116 (302)
Q Consensus 37 ~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g~ 116 (302)
.++++.+++++|++..++..++|++..+.. .++.+. +++|.|+++++.|..+...+...|.+++.+|. .++.
T Consensus 70 ~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~--~~~~l~-----~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~-~~~~ 141 (367)
T PRK02731 70 FELKAALAEKFGVDPERIILGNGSDEILEL--LARAYL-----GPGDEVIYSEHGFAVYPIAAQAVGAKPVEVPA-KDYG 141 (367)
T ss_pred HHHHHHHHHHhCcCHHHEEEcCCHHHHHHH--HHHHhc-----CCCCEEEEecCCHHHHHHHHHHcCCeEEEecc-cCCC
Confidence 578889999999987777778887532122 122221 57899999999887777677889999999998 4567
Q ss_pred CCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHh--CCEEEEecCCccccc-ccCCC----CccCCc-
Q psy7357 117 IDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEH--GGQVYLDGANMNAQV-GLCRP----GDYGSD- 187 (302)
Q Consensus 117 iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~--g~llivD~a~~~~~~-~~~~p----~~~gaD- 187 (302)
+|++++++.++ +++++|++++| |++|.+. +.+++.++++.. |+++++|.++..... ....+ .+...+
T Consensus 142 ~~~~~l~~~~~---~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~ 217 (367)
T PRK02731 142 HDLDAMLAAVT---PRTRLVFIANPNNPTGTYL-PAEEVERFLAGVPPDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNV 217 (367)
T ss_pred CCHHHHHHHhC---CCCcEEEEeCCCCCCCcCC-CHHHHHHHHHhCCCCcEEEEECcHHHhccCcCcccHHHHHhhcCCE
Confidence 89999999997 68899999999 5999998 689999998875 899999998631110 00000 011224
Q ss_pred EEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 188 VSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 188 iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
+++.+..|+|+ ..|.|+|++++++++.+.+
T Consensus 218 i~~~S~SK~~g----~~G~RiG~l~~~~~~~~~l 247 (367)
T PRK02731 218 VVTRTFSKAYG----LAGLRVGYGIAPPEIIDAL 247 (367)
T ss_pred EEEeeehHhhc----CcccceeeeeCCHHHHHHH
Confidence 44445556554 4488999999998766554
No 179
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=99.67 E-value=2.6e-15 Score=146.93 Aligned_cols=180 Identities=16% Similarity=0.253 Sum_probs=130.1
Q ss_pred CCCCCCcccccHHHHHHHHHHHHHHHhC----CCeeeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCccc
Q psy7357 21 HPFIPQDQARGYEQLIGELETDLCEITG----YDKISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTN 95 (302)
Q Consensus 21 ~py~p~e~sqG~l~~~~e~~~~l~~l~g----~~~~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~ 95 (302)
..|++ ++|..++++++.+.+.+.+| ++..++..++|++ +...++.++. ++||.|++++|.|+.+
T Consensus 88 ~~y~~---~~G~~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~~~l~--------~pGD~Vlv~~P~Y~~~ 156 (496)
T PLN02376 88 ANFQD---YHGLKKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLA--------DPGDVFLIPSPYYAAF 156 (496)
T ss_pred hccCC---CCCcHHHHHHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHHHHhC--------CCCCEEEECCCCccch
Confidence 44655 78999999999999988877 5666787788874 3433333332 6899999999999888
Q ss_pred HHHHH-hCCCEEEEeecCC--CCCCCHHHHHHHHhc---cCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEE
Q psy7357 96 PASAQ-MAGMSVEPVSVRK--DGTIDFSDLETKVKK---NKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVY 166 (302)
Q Consensus 96 ~~~~~-~~g~~v~~i~~~~--~g~iD~~~l~~~i~~---~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~lli 166 (302)
...+. ..|++++.+|++. +..+|++++++++.+ ...++++|+++|| ||+|.+- +.+++|.++|+++|+++|
T Consensus 157 ~~~~~~~~G~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI 236 (496)
T PLN02376 157 DRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLV 236 (496)
T ss_pred HHHHHhhCCCEEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence 77665 5899999999963 457899999877532 1257899999999 5999873 257888999999999999
Q ss_pred EecCCcccc-cc--cCCC----Ccc-----CCc--EEEeCCCcccCCCCCCCCCcceeEEEeC
Q psy7357 167 LDGANMNAQ-VG--LCRP----GDY-----GSD--VSHLNLHKTFCIPHGGGGPGMGPIGVKS 215 (302)
Q Consensus 167 vD~a~~~~~-~~--~~~p----~~~-----gaD--iv~~~~hK~l~~p~~~gGp~~G~l~~~~ 215 (302)
.|.++.... .. ..+. .+. ..| +++.+.+|+|+.| |.|+|++++.+
T Consensus 237 ~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glp----GlRvG~li~~~ 295 (496)
T PLN02376 237 VDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLP----GFRVGIVYSFN 295 (496)
T ss_pred EEcCccccccCCCCcccHHHhhccccccccCCCeEEEEEeccccCCCC----cceEEEEEECC
Confidence 999874221 11 1110 000 113 2356778888755 89999999853
No 180
>PTZ00377 alanine aminotransferase; Provisional
Probab=99.67 E-value=1.3e-15 Score=148.81 Aligned_cols=188 Identities=14% Similarity=0.157 Sum_probs=132.0
Q ss_pred CCCCCCcccccHHHHHHHHHHHHHHHhCCC--eeeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH
Q psy7357 21 HPFIPQDQARGYEQLIGELETDLCEITGYD--KISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA 97 (302)
Q Consensus 21 ~py~p~e~sqG~l~~~~e~~~~l~~l~g~~--~~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~ 97 (302)
+-|.+ ++|..++++.+.+.+.+..|.+ ..++..++|++ +...++.++. .++||.|++++|.|+.+..
T Consensus 109 ~~Y~~---~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~-------~~~gD~Vlv~~P~y~~y~~ 178 (481)
T PTZ00377 109 GAYTD---SAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLI-------GDPSDGVMIPIPQYPLYSA 178 (481)
T ss_pred cCcCc---ccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhc-------cCCCCEEEECCCCchhHHH
Confidence 34554 6899999999998888776754 45777777874 3433333321 1479999999999988888
Q ss_pred HHHhCCCEEEEeecCCC--CCCCHHHHHHHHhcc---CCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEec
Q psy7357 98 SAQMAGMSVEPVSVRKD--GTIDFSDLETKVKKN---KETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDG 169 (302)
Q Consensus 98 ~~~~~g~~v~~i~~~~~--g~iD~~~l~~~i~~~---~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~ 169 (302)
.++..|.+++.+|++++ ..+|+++|++++++. .+++++|+++|| |+||.+- +.+++|+++|+++|+++|.|.
T Consensus 179 ~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De 258 (481)
T PTZ00377 179 AITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADE 258 (481)
T ss_pred HHHHcCCEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEeh
Confidence 88999999999998753 478999999999731 127899999999 6999873 258999999999999999999
Q ss_pred CCcc-cc-c--ccCCC----CccC------CcE-EEeCCCcccCCCCCCCCCcceeEEE---eCCCCCCC
Q psy7357 170 ANMN-AQ-V--GLCRP----GDYG------SDV-SHLNLHKTFCIPHGGGGPGMGPIGV---KSHLAPFL 221 (302)
Q Consensus 170 a~~~-~~-~--~~~~p----~~~g------aDi-v~~~~hK~l~~p~~~gGp~~G~l~~---~~~l~~~l 221 (302)
++.- .. . ...+. ..+. ..+ ++.+.+|+|. ++.|+|+||+.+ ++++++.+
T Consensus 259 ~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~---~~~GlRiG~~~~~~~p~~li~~l 325 (481)
T PTZ00377 259 VYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGII---GECGRRGGYFELTNIPPEVREQI 325 (481)
T ss_pred hhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccc---cCCcCceEEEEEeCCCHHHHHHH
Confidence 8631 11 1 01010 0111 124 4455677642 334999999987 66666554
No 181
>PRK07683 aminotransferase A; Validated
Probab=99.67 E-value=1.6e-15 Score=144.06 Aligned_cols=179 Identities=16% Similarity=0.160 Sum_probs=129.8
Q ss_pred cccHHHHHHHHHHHHHHHhCC--Cee-eEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGY--DKI-SFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~--~~~-~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~ 104 (302)
.+|..+++.++.+.+.+..|. +.. ++..++|+ +|...++.++. +++|+|+++++.|+.+...++..|+
T Consensus 64 ~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~--------~~gd~Vl~~~p~y~~~~~~~~~~g~ 135 (387)
T PRK07683 64 NAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDIAFRTIL--------EPGTEVILPAPIYPGYEPIIRLCGA 135 (387)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhC--------CCCCEEEEcCCCccchHHHHHHcCC
Confidence 478888888888888766675 344 56666665 44433332222 5789999999998888888889999
Q ss_pred EEEEeecCCC-CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCccc-ccc-c
Q psy7357 105 SVEPVSVRKD-GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMNA-QVG-L 178 (302)
Q Consensus 105 ~v~~i~~~~~-g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~~-~~~-~ 178 (302)
+++.++.+++ ..+|++++++.++ +++++|++++| |++|... .++++|.++|+++|+++|+|.++..- ... .
T Consensus 136 ~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~ 212 (387)
T PRK07683 136 KPVFIDTRSTGFRLTAEALENAIT---EKTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPH 212 (387)
T ss_pred EEEEeecCcccCCCCHHHHHHhcC---cCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCc
Confidence 9999998754 4679999999987 67899999999 5999862 25899999999999999999986411 111 0
Q ss_pred CCCC----ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 179 CRPG----DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 179 ~~p~----~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
.+.. ..+-.+++.+..|.|+.| |.|+|++++++++++.+.
T Consensus 213 ~~~~~~~~~~~~vi~~~s~SK~~~~p----GlRiG~i~~~~~l~~~~~ 256 (387)
T PRK07683 213 TSIAHFPEMREKTIVINGLSKSHSMT----GWRIGFLFAPSYLAKHIL 256 (387)
T ss_pred CChhhccCCcCCeEEEeeccccccCc----cceeEEEEcCHHHHHHHH
Confidence 0111 112246677777777655 899999999987766654
No 182
>PLN02590 probable tyrosine decarboxylase
Probab=99.67 E-value=2e-15 Score=148.10 Aligned_cols=183 Identities=11% Similarity=0.047 Sum_probs=134.8
Q ss_pred cccccHHHHHHHHHHHHHHHhCCCee--------eEeeCchHHHHHHHHHHHHHHHHh-hcC--CCCCEEEEcCCCCccc
Q psy7357 27 DQARGYEQLIGELETDLCEITGYDKI--------SFQPNSGAQGEYAGLRAIQCYHQA-QDA--HHRNVCLIPVSAHGTN 95 (302)
Q Consensus 27 e~sqG~l~~~~e~~~~l~~l~g~~~~--------~~~~~~Ga~a~~a~l~a~~~~~~~-~g~--~~~d~Vlv~~~~hg~~ 95 (302)
+.+.+..++-.++.+++++++|++.. -+..++|++|++.++.+.|..... .+. .++-.|++|+..|.+.
T Consensus 163 ~~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~Sv 242 (539)
T PLN02590 163 LTSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSSF 242 (539)
T ss_pred ccCchhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchHHH
Confidence 56788888999999999999999852 344566777777777777653321 111 1233677788899887
Q ss_pred HHHHHhCCC---EEEEeecCC--CCCCCHHHHHHHHhccC---CCeEEEEEecCC-CceeccccHHHHHHHHHHhCCEEE
Q psy7357 96 PASAQMAGM---SVEPVSVRK--DGTIDFSDLETKVKKNK---ETLSCLMITYPS-TFGVFEENITDVCELIHEHGGQVY 166 (302)
Q Consensus 96 ~~~~~~~g~---~v~~i~~~~--~g~iD~~~l~~~i~~~~---~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~g~lli 166 (302)
...+...|+ .++.||+|. ++.+|+++|+++|++.. -.+.+|+.+-.+ .+|.++ |+++|+++|+++|+|+|
T Consensus 243 ~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiD-pl~~Ia~i~~~~g~WlH 321 (539)
T PLN02590 243 RKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVD-PLVPLGNIAKKYGIWLH 321 (539)
T ss_pred HHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccC-CHHHHHHHHHHhCCeEE
Confidence 788888888 599999984 57899999999997421 134566666654 689999 79999999999999999
Q ss_pred EecCCcccccccCC-----CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeC
Q psy7357 167 LDGANMNAQVGLCR-----PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKS 215 (302)
Q Consensus 167 vD~a~~~~~~~~~~-----p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~ 215 (302)
||+|+.-+...... .+-..+|-++.+.|||+..|+ ..|++++++
T Consensus 322 VDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~-----~cg~llvr~ 370 (539)
T PLN02590 322 VDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQ-----TCSPLWVKD 370 (539)
T ss_pred EecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcCc-----CEEEEEecC
Confidence 99986322211110 123458999999999999875 567888885
No 183
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=99.67 E-value=4.5e-15 Score=142.46 Aligned_cols=245 Identities=18% Similarity=0.218 Sum_probs=156.4
Q ss_pred HHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCC--
Q psy7357 36 IGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRK-- 113 (302)
Q Consensus 36 ~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~-- 113 (302)
+.++++.+++++|.+.+ +.+.+|+.|+..+++++. ++||.| ++++.+.++.......|.+++.+++++
T Consensus 55 ~~~Leeaia~~~g~~~v-v~t~~Gt~Al~la~~al~--------~pGD~V-~~~~~f~~~~~~i~~~Ga~pv~v~i~~~~ 124 (431)
T cd00617 55 FYDLEDAVQDLFGFKHI-IPTHQGRGAENILFSILL--------KPGRTV-PSNMHFDTTRGHIEANGAVPVDLVIDEAH 124 (431)
T ss_pred HHHHHHHHHHHHCCCeE-EEcCCHHHHHHHHHHHhC--------CCCCEE-ccCCcccchHHHHHhCCCEeEEEeccccc
Confidence 35777888999999875 456677787755555543 689976 677777777778889999999999863
Q ss_pred --------CCCCCHHHHHHHHhcc-CCCeEEEEEecCC-Cc-eecc--ccHHHHHHHHHHhCCEEEEecCCccc--cc--
Q psy7357 114 --------DGTIDFSDLETKVKKN-KETLSCLMITYPS-TF-GVFE--ENITDVCELIHEHGGQVYLDGANMNA--QV-- 176 (302)
Q Consensus 114 --------~g~iD~~~l~~~i~~~-~~~t~~V~i~~Pn-~~-G~~~--~di~~I~~ia~~~g~llivD~a~~~~--~~-- 176 (302)
.|.+|+++|+++|+++ .+++++|++++|| ++ |..- +++++|+++|+++|+++|.|+++... ..
T Consensus 125 ~~~~~~pf~gniD~e~Le~~I~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~ 204 (431)
T cd00617 125 DAQELIPFKGNIDVAKLEKLIDEVGAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIK 204 (431)
T ss_pred ccccccCCCCCcCHHHHHHHhCcccCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhh
Confidence 3569999999999843 2348889999985 55 7652 25889999999999999999996532 11
Q ss_pred ----cc--CCCCc------cCCcEEEeCCCcccCCCCCCCCCcceeEEEeC-CCCCCCCCCccc-C--------CCCcch
Q psy7357 177 ----GL--CRPGD------YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKS-HLAPFLPVHPLS-S--------IDSSIG 234 (302)
Q Consensus 177 ----~~--~~p~~------~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~-~l~~~lpg~~~~-~--------~~~~l~ 234 (302)
+. .++.+ -..|.++.+++|.+.. |-+|++++++ ++++++....+. . +...+.
T Consensus 205 ~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~~------~~GG~i~~~d~~l~~~~~~~~~~~~~~~~~gG~~~r~~~ 278 (431)
T cd00617 205 EREEGYRDKSIAEIAREMFSYADGCTMSAKKDGLV------NIGGFLALRDDELYEEARQRVVLYEGFVTYGGMAGRDME 278 (431)
T ss_pred cccccccCCCHHHHHHHhhccCCEEEEEeecCCCC------ccceEEEeCcHHHHHHHHHhccccCCccccccccHHHHH
Confidence 11 11211 1478889888887764 4468999986 476665432211 0 111111
Q ss_pred hhhHHHHhh--Hh-hHHH-H-HHHHH-HHh-cccccccccCCCcceeEEEEEEecccccc---CCCCHHHHHHHhhc
Q psy7357 235 AVSAAHYGS--AS-ILPI-S-WAYIR-RLE-SHYKTLFRSSRSGLVAHEFVIDVRDFKKS---ANIEAVDIAKRLMD 301 (302)
Q Consensus 235 ~~~a~~~~~--~~-~~~~-~-~~y~~-~l~-~g~~~~~~~~~~~~~~he~~~~~~~~~~~---~g~~~~~~~~~l~~ 301 (302)
+++.+..-. .. +..+ . ..|+. .|. .|++++.+ .. .|-+.+|.+.+... .+.+..++++.|+.
T Consensus 279 A~A~gL~e~~~~~~l~~~~~~r~~l~~~L~~~G~~v~~P-~G----gh~v~~d~~~~~~~~~~~~~~~~~la~~L~~ 350 (431)
T cd00617 279 ALAQGLREAVEEDYLRHRVEQVRYLGDRLDEAGVPIVEP-AG----GHAVFIDAREFLPHIPQEQFPAQALAAELYL 350 (431)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHCCCCccCC-Cc----ceEEEEEhHHhcCCCCcccCcHHHHHHHHHH
Confidence 221111110 00 0000 0 03443 566 58887643 34 79999998865221 12457777777753
No 184
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=99.67 E-value=3.9e-15 Score=141.02 Aligned_cols=166 Identities=18% Similarity=0.191 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCC-
Q psy7357 35 LIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRK- 113 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~- 113 (302)
...++++.+++++|.+.. +..++|+.|...++.++. .++||+|+++++.|..+...+...|++++.+++++
T Consensus 30 ~~~~le~~la~~~g~~~~-v~~~sgt~al~~~l~al~-------~~~Gd~Viv~~~~~~~~~~~~~~~G~~~~~~~~~~~ 101 (380)
T TIGR03588 30 TVPAFEEALAEYVGAKYA-VAFNSATSALHIACLALG-------VGPGDRVWTTPITFVATANCALYCGAKVDFVDIDPD 101 (380)
T ss_pred hHHHHHHHHHHHHCCCeE-EEEcCHHHHHHHHHHHcC-------CCCCCEEEeCCcchHHHHHHHHHcCCEEEEEecCCC
Confidence 467899999999999875 445677776644444431 15799999999998777777788999999999965
Q ss_pred CCCCCHHHHHHHHhccC-CCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCC----cE
Q psy7357 114 DGTIDFSDLETKVKKNK-ETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGS----DV 188 (302)
Q Consensus 114 ~g~iD~~~l~~~i~~~~-~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~ga----Di 188 (302)
++.+|++++++.+++++ ++|++|+++++ +|... |+++|+++|+++|+++|+|++|..+.. + .....|. |+
T Consensus 102 ~~~~d~~~l~~~i~~~~~~~t~~v~~~~~--~G~~~-~~~~i~~l~~~~~~~lI~D~a~a~g~~-~-~~~~~g~~~~~d~ 176 (380)
T TIGR03588 102 TGNIDEDALEKKLAAAKGKLPKAIVPVDF--AGKSV-DMQAIAALAKKHGLKIIEDASHALGAE-Y-GGKPVGNCRYADA 176 (380)
T ss_pred cCCcCHHHHHHHhhcccCCCceEEEEeCC--CCccC-CHHHHHHHHHHcCCEEEEECCCcccCc-c-CCEeCCCccccce
Confidence 57899999999997321 36888888764 68888 799999999999999999999865432 1 1122233 99
Q ss_pred EEeCCC--cccCCCCCCCCCcceeEEEe-CCCCC
Q psy7357 189 SHLNLH--KTFCIPHGGGGPGMGPIGVK-SHLAP 219 (302)
Q Consensus 189 v~~~~h--K~l~~p~~~gGp~~G~l~~~-~~l~~ 219 (302)
.++|+| |++.. +.+|+++++ +++.+
T Consensus 177 ~~~S~~~~K~~~~------~~GG~v~~~~~~~~~ 204 (380)
T TIGR03588 177 TVFSFHPVKIITT------AEGGAVTTNDEELAE 204 (380)
T ss_pred EEEecCCCCcccc------cCceEEEECCHHHHH
Confidence 999988 66652 345777765 34433
No 185
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=99.66 E-value=1.4e-15 Score=133.50 Aligned_cols=170 Identities=19% Similarity=0.289 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHHhCCCeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecC-
Q psy7357 35 LIGELETDLCEITGYDKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVR- 112 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~- 112 (302)
.+..+-+.+++++|||.+. ++.|+ .+-++++.++. +++|-|++...+|-+....++..|.+|..+|-.
T Consensus 62 pI~~F~~dlaeFlg~D~~R--~t~GARe~KfavMhal~--------~~gd~vV~D~~aHYttyvAAEragl~v~eVp~tg 131 (382)
T COG1103 62 PIKDFLEDLAEFLGMDEVR--VTAGAREAKFAVMHALC--------KEGDWVVVDSLAHYTTYVAAERAGLNVAEVPNTG 131 (382)
T ss_pred cHHHHHHHHHHHhCCceee--ecccchhhHHHHHHHhc--------cCCCEEEEcCcchHHHHHHHHhcCCeEEecCCCC
Confidence 5677778899999999865 45677 66667777765 689999999899876667788999999999954
Q ss_pred -CCCCCCHHHHHHHHhccC----CCeEEEEEecCC-CceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCC
Q psy7357 113 -KDGTIDFSDLETKVKKNK----ETLSCLMITYPS-TFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGS 186 (302)
Q Consensus 113 -~~g~iD~~~l~~~i~~~~----~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~ga 186 (302)
++..++++...+.|++.. +.+++.++++|. .+|.+. |.+.++++|+++|+++++.+|+.++.+.. +-.+.|+
T Consensus 132 ~Pey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~-Dakkva~ic~e~gvPlllN~AYt~Grmpv-s~ke~g~ 209 (382)
T COG1103 132 YPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLA-DAKKVAKICREYGVPLLLNCAYTVGRMPV-SGKEIGA 209 (382)
T ss_pred CCceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCch-hhHHHHHHHHHcCCceEeecceeeccccc-cccccCC
Confidence 256789999888886432 347888899985 789999 89999999999999999999998777764 5567899
Q ss_pred cEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 187 DVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 187 Div~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
|++++|.||++... | .+|++..++++.+.+
T Consensus 210 DFiVgSGHKsmAAs----~-PiGvl~~~eE~ae~V 239 (382)
T COG1103 210 DFIVGSGHKSMAAS----A-PIGVLAMSEEWAEIV 239 (382)
T ss_pred CEEEecCccchhcc----C-CeeEEeehhHHHHHH
Confidence 99999999998753 3 489999999887754
No 186
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=99.66 E-value=3.6e-15 Score=142.81 Aligned_cols=170 Identities=17% Similarity=0.178 Sum_probs=123.0
Q ss_pred cccHHHHHHHHHHHHHHHhC--------CCeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHH
Q psy7357 29 ARGYEQLIGELETDLCEITG--------YDKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASA 99 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g--------~~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~ 99 (302)
.+|..++++.+.+.+.+.++ ++..++..++|+ ++...++.++. +++|+|++++|.|..+...+
T Consensus 74 ~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~--------~~gd~vlv~~P~y~~~~~~~ 145 (412)
T PTZ00433 74 TVGSPEAREAVATYWRNSFVHKESLKSTIKKDNVVLCSGVSHAILMALTALC--------DEGDNILVPAPGFPHYETVC 145 (412)
T ss_pred CCCcHHHHHHHHHHHHhhccccccccCCCChhhEEEeCChHHHHHHHHHHhc--------CCCCEEEEccCCcccHHHHH
Confidence 57888888888877776543 445567777776 44433333322 68899999999998888888
Q ss_pred HhCCCEEEEeecCC--CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCccc
Q psy7357 100 QMAGMSVEPVSVRK--DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMNA 174 (302)
Q Consensus 100 ~~~g~~v~~i~~~~--~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~~ 174 (302)
+..|++++.+|.++ ++.+|++++++.++ +++++|+++|| |++|..- +++++|.++|+++|+++++|.++.--
T Consensus 146 ~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~---~~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~ 222 (412)
T PTZ00433 146 KAYGIEMRFYNCRPEKDWEADLDEIRRLVD---DRTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGM 222 (412)
T ss_pred HHcCCEEEEEecCccccCcCCHHHHHHHhc---cCceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 99999999999864 45799999999987 67899999999 5899752 26889999999999999999986311
Q ss_pred -ccc--cCCCCcc---CCcEEEeCCCcccCCCCCCCCCcceeEEE
Q psy7357 175 -QVG--LCRPGDY---GSDVSHLNLHKTFCIPHGGGGPGMGPIGV 213 (302)
Q Consensus 175 -~~~--~~~p~~~---gaDiv~~~~hK~l~~p~~~gGp~~G~l~~ 213 (302)
... ..+...+ ..-|++.+..|+|+.| |.|+|++++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~p----GlRlG~~i~ 263 (412)
T PTZ00433 223 VFNGATFTSVADFDTTVPRVILGGTAKNLVVP----GWRLGWLLL 263 (412)
T ss_pred ccCCCCccchhhccCCCceEEEccchhhcCCC----CeeEEEEEE
Confidence 111 0010111 1125566667776654 899999997
No 187
>PRK07049 methionine gamma-lyase; Validated
Probab=99.66 E-value=3e-15 Score=143.97 Aligned_cols=169 Identities=16% Similarity=0.136 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH----HHhCCCEEEEee
Q psy7357 35 LIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS----AQMAGMSVEPVS 110 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~----~~~~g~~v~~i~ 110 (302)
...++++.++++.|.+. .+...+|..|..+++.++. ++||+|+++++.|+.+... ++..|++++.++
T Consensus 84 t~~~Le~~lA~leg~~~-~iv~~sG~~Ai~~~l~al~--------~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi~~v~~~ 154 (427)
T PRK07049 84 NSEIVEDRLAVYEGAES-AALFSSGMSAIATTLLAFV--------RPGDVILHSQPLYGGTETLLAKTFRNFGVGAVGFA 154 (427)
T ss_pred CHHHHHHHHHHHhCCCc-EEEEccHHHHHHHHHHHHh--------CCCCEEEEcCCCcccHHHHHHHHHHhcCcEEEEEe
Confidence 35789999999999875 4556778776655555544 6899999999999877554 356788877776
Q ss_pred cCCCCCCCHHHHHHHHhcc--CCCeEEEEEecC-CCceeccccHHHHHHHHHH------hCCEEEEecCCcccccccCCC
Q psy7357 111 VRKDGTIDFSDLETKVKKN--KETLSCLMITYP-STFGVFEENITDVCELIHE------HGGQVYLDGANMNAQVGLCRP 181 (302)
Q Consensus 111 ~~~~g~iD~~~l~~~i~~~--~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~------~g~llivD~a~~~~~~~~~~p 181 (302)
. + .|++++++++++. ++++++|++++| |++|.+. |+++|.+++++ +++++++|.+.... ....|
T Consensus 155 ~---~-~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~-d~~~l~~la~~~~~~~~~~~~vvvDety~~~--~~~~p 227 (427)
T PRK07049 155 D---G-LSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLV-DVAAVRRVADAIEARQGHRPIIACDNTLLGP--VFQKP 227 (427)
T ss_pred C---C-CCHHHHHHHHHhhccCCCceEEEEECCCCCCCccc-CHHHHHHHHHHhhhcccCCCEEEEECCcccc--ccCCc
Confidence 2 2 5788888877532 257899999999 5999998 79999999988 78999999874211 12346
Q ss_pred CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 182 GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 182 ~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
.++++|+++.|++|+++. .+|.++|+++.++++++++.
T Consensus 228 l~~g~divv~S~SK~~gG---~~glr~G~vv~~~~l~~~l~ 265 (427)
T PRK07049 228 LEHGADLSVYSLTKYVGG---HSDLVAGAVLGRKALIRQVR 265 (427)
T ss_pred cccCCCEEEEcCceeecC---CCCcEEEEEECCHHHHHHHH
Confidence 677899999999999883 35789999998877766553
No 188
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=99.66 E-value=3e-15 Score=140.56 Aligned_cols=169 Identities=15% Similarity=0.200 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCC-
Q psy7357 36 IGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKD- 114 (302)
Q Consensus 36 ~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~- 114 (302)
..++++.+++.++++..++..++|++. +...+++.+ .+++ ++++.|.|..+...++..|.+++.+|.+++
T Consensus 57 ~~~lr~~ia~~~~~~~~~i~it~Ga~~--~l~~~~~~l------~~g~-viv~~P~y~~~~~~~~~~g~~~~~v~~~~~~ 127 (356)
T PRK08056 57 YRHLHQALARHHQVPASWILAGNGETE--SIFAVVSGL------KPRR-AMIVTPGFAEYRRALQQVGCEIRRYSLREAD 127 (356)
T ss_pred HHHHHHHHHHHhCcChhhEEECCCHHH--HHHHHHHHh------CCCC-EEEeCCCcHHHHHHHHHcCCeEEEEeccccc
Confidence 468888899999998878888888742 222223322 3455 466677776666778899999999998653
Q ss_pred C-CCCHHHHHHHHhccCCCeEEEEEecC-CCceecccc---HHHHHHHHHHhCCEEEEecCCc-ccccc---cCCCCccC
Q psy7357 115 G-TIDFSDLETKVKKNKETLSCLMITYP-STFGVFEEN---ITDVCELIHEHGGQVYLDGANM-NAQVG---LCRPGDYG 185 (302)
Q Consensus 115 g-~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~d---i~~I~~ia~~~g~llivD~a~~-~~~~~---~~~p~~~g 185 (302)
+ .+| +++++.+. +++++|+++|| |+||... + +++|+++|+++++++|+|.++. ..... ........
T Consensus 128 ~~~~~-~~~~~~~~---~~~k~v~l~~p~NPTG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~ 202 (356)
T PRK08056 128 GWQLT-DAILEALT---PDLDCLFLCTPNNPTGLLP-ERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQLADNP 202 (356)
T ss_pred CCCcc-HHHHHhcc---CCCCEEEEeCCcCCCCCCC-CHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHHhccCC
Confidence 3 445 45666665 78899999999 5999875 4 8889999999999999999852 11000 00011233
Q ss_pred CcEEEeCCCcccCCCCCCCCCcceeEEEe-CCCCCCCC
Q psy7357 186 SDVSHLNLHKTFCIPHGGGGPGMGPIGVK-SHLAPFLP 222 (302)
Q Consensus 186 aDiv~~~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~lp 222 (302)
..+++.|.+|+|+.| |.|+|+++++ +++++.+.
T Consensus 203 ~~i~~~S~SK~~~~~----G~RiG~~v~~~~~~~~~l~ 236 (356)
T PRK08056 203 HLWVLRSLTKFYAIP----GLRLGYLVNSDDAAVARMR 236 (356)
T ss_pred CEEEEEechhhccCc----chhheeeecCCHHHHHHHH
Confidence 468888889988866 8999999985 45544443
No 189
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=99.66 E-value=1.4e-15 Score=144.67 Aligned_cols=178 Identities=15% Similarity=0.145 Sum_probs=127.7
Q ss_pred cccHHHHHHHHHHHHHHHhCCC----ee-eEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCE--EEEcCCCCcccHHHHH
Q psy7357 29 ARGYEQLIGELETDLCEITGYD----KI-SFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNV--CLIPVSAHGTNPASAQ 100 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~----~~-~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~--Vlv~~~~hg~~~~~~~ 100 (302)
.+|..++++.+.+.+.+.+|.+ .. ++..++|++ +...++.++. ++||. |++++|.|..+...++
T Consensus 63 ~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~~al~~~~~~l~--------~~gd~~~vlv~~P~y~~~~~~~~ 134 (393)
T TIGR03538 63 TKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFAFAQAVI--------NPGQAPLVVMPNPFYQIYEGAAL 134 (393)
T ss_pred CCCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcHHHHHHHHHHHc--------CCCCcceEEecCCCCcchHHHHH
Confidence 6888888888888888876653 33 577777874 3323322222 56764 9999999888888888
Q ss_pred hCCCEEEEeecCCC--CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcc-c
Q psy7357 101 MAGMSVEPVSVRKD--GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMN-A 174 (302)
Q Consensus 101 ~~g~~v~~i~~~~~--g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~-~ 174 (302)
..|.+++.+|++++ ..+|++++++++. +++++|+++|| ||||.+- +.+++|.++|+++|+++|.|.++.. .
T Consensus 135 ~~g~~~~~v~~~~~~~~~~d~~~l~~~~~---~~~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~ 211 (393)
T TIGR03538 135 LAGAEPYFLNCTAENGFLPDFDAVPESVW---RRCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELY 211 (393)
T ss_pred hcCCeEEEeeccccCCCCCCHHHHHHHHh---hcceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcc
Confidence 99999999999643 3689999999987 67899999999 5999873 1489999999999999999998631 1
Q ss_pred ccc-cCCC------CccCC----c-EEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 175 QVG-LCRP------GDYGS----D-VSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 175 ~~~-~~~p------~~~ga----D-iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
... ...+ ...+. . |++.|..|.|+.| |.|+|++++++++++.+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~~----GlRvG~~i~~~~l~~~~ 266 (393)
T TIGR03538 212 FDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLP----GLRSGFVAGDAEILKAF 266 (393)
T ss_pred cCCCCCCcCHHHhcccccccccccEEEEecchhhcCCc----ccceEEEecCHHHHHHH
Confidence 110 0000 11111 1 5666666766544 89999999988776654
No 190
>PRK08175 aminotransferase; Validated
Probab=99.66 E-value=2e-15 Score=143.66 Aligned_cols=181 Identities=19% Similarity=0.204 Sum_probs=129.9
Q ss_pred cccHHHHHHHHHHHHHHHhCCC--ee-eEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYD--KI-SFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~--~~-~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~ 104 (302)
.+|..++++.+.+.+.+.+|.. .. ++..++|++ +....+.++. ++||+|+++++.|+.+...++..|.
T Consensus 66 ~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~--------~~gd~Vlv~~P~y~~~~~~~~~~g~ 137 (395)
T PRK08175 66 SRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGLAHLMLATL--------DHGDTVLVPNPSYPIHIYGAVIAGA 137 (395)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHhC--------CCCCEEEEcCCCCcchHHHHHHcCC
Confidence 6788888888888888776753 33 577778874 3322222222 6899999999999888777788999
Q ss_pred EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCCcc-ccccc--
Q psy7357 105 SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGANMN-AQVGL-- 178 (302)
Q Consensus 105 ~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~~~-~~~~~-- 178 (302)
+++.+|.++++ .++++++++++++.+++++|++++| |++|.+-+ .+++|.++|+++|+++|+|.++.. .....
T Consensus 138 ~~~~v~~~~~~-~~~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~ 216 (395)
T PRK08175 138 QVRSVPLVEGV-DFFNELERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKA 216 (395)
T ss_pred eEEEEecccCC-CcHHHHHHHHhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCC
Confidence 99999987643 3588999988754467899999998 59998741 358999999999999999998631 11110
Q ss_pred CC----CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 179 CR----PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 179 ~~----p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
.+ ++..+..+++.+..|+|+.| |.|+|++++++++++.+.
T Consensus 217 ~~~~~~~~~~~~~i~~~S~SK~~g~p----GlRiG~~~~~~~l~~~~~ 260 (395)
T PRK08175 217 PSIMQVPGAKDVAVEFFTLSKSYNMA----GWRIGFMVGNPELVSALA 260 (395)
T ss_pred cchhcCCCcccCEEEEeeccccccCc----chhheeeeCCHHHHHHHH
Confidence 01 11112225567777777654 889999999887777654
No 191
>PRK07582 cystathionine gamma-lyase; Validated
Probab=99.66 E-value=1.8e-15 Score=142.83 Aligned_cols=162 Identities=17% Similarity=0.151 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH----HHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS----AQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~----~~~~g~~v~~i 109 (302)
.-..++++.++++.+ ...+...+|+.|+.+++.++. ++||+||++++.|+.+... .+..|++++.+
T Consensus 51 p~~~~Le~~lA~l~~--~~~v~~~sG~~Ai~~~l~all--------~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~~v~~v 120 (366)
T PRK07582 51 PTWRALEAALGELEG--AEALVFPSGMAAITAVLRALL--------RPGDTVVVPADGYYQVRALAREYLAPLGVTVREA 120 (366)
T ss_pred ccHHHHHHHHHHHcC--CCEEEECCHHHHHHHHHHHhc--------CCCCEEEEeCCCcHhHHHHHHHHHhcCeEEEEEE
Confidence 346788889999883 345567788876645554442 6899999998887665443 34579999999
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecCC-CceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYPS-TFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
+.++++ + .+. +++++|++++|| ++|.+. |+++|+++||++|+++++|+++....+ ..|.++++|+
T Consensus 121 ~~~~~~-------~-~~~---~~t~lV~le~p~NPtg~v~-di~~I~~~a~~~g~~lvVD~t~~~~~~--~~p~~~g~Di 186 (366)
T PRK07582 121 PTAGMA-------E-AAL---AGADLVLAETPSNPGLDVC-DLAALAAAAHAAGALLVVDNTTATPLG--QRPLELGADL 186 (366)
T ss_pred CCCChH-------H-Hhc---cCceEEEEECCCCCCCCcc-CHHHHHHHHHHcCCEEEEECCCCCccc--cCchhcCCcE
Confidence 875321 1 233 678999999995 888788 899999999999999999998643322 3466789999
Q ss_pred EEeCCCcccCCCCCCCCCcceeEEEe-CCCCCCCC
Q psy7357 189 SHLNLHKTFCIPHGGGGPGMGPIGVK-SHLAPFLP 222 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~lp 222 (302)
++.++||+++.| +|.++|+++++ +++.+++.
T Consensus 187 vv~S~sK~l~G~---~g~~~G~v~~~~~~l~~~l~ 218 (366)
T PRK07582 187 VVASDTKALTGH---SDLLLGYVAGRDPELMAAVE 218 (366)
T ss_pred EEecccccccCC---CCeeEEEEEcCcHHHHHHHH
Confidence 999999998743 24457999885 55555543
No 192
>PRK06107 aspartate aminotransferase; Provisional
Probab=99.65 E-value=1.6e-15 Score=144.79 Aligned_cols=179 Identities=15% Similarity=0.145 Sum_probs=130.4
Q ss_pred cccHHHHHHHHHHHHHHHhCCC--eeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITGYD--KISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~--~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
.+|..++++++.+.+++.+|.+ ..++..++|+ +|...++.++. ++||.|+++++.|+.+.......+.+
T Consensus 69 ~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~~~--------~~gd~vl~~~p~y~~y~~~~~~~~~~ 140 (402)
T PRK06107 69 VNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLALMATL--------EAGDEVIIPAPYWVSYPDMVLANDGT 140 (402)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhc--------CCCCEEEEecCCCcCHHHHHHHcCCE
Confidence 5788899999999999888874 3467777776 54433333322 68999999999988888777788888
Q ss_pred EEEeecCC--CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHh-CCEEEEecCCcc-cccc-
Q psy7357 106 VEPVSVRK--DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEH-GGQVYLDGANMN-AQVG- 177 (302)
Q Consensus 106 v~~i~~~~--~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~-g~llivD~a~~~-~~~~- 177 (302)
++.++.+. ++.+|+++++++++ +++++|++++| |++|... +++++|+++|+++ |+++|+|.++.. ....
T Consensus 141 ~~~v~~~~~~~~~~~~~~l~~~~~---~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~ 217 (402)
T PRK06107 141 PVIVACPEEQGFKLTPEALEAAIT---PRTRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDE 217 (402)
T ss_pred EEEecCCcccCCCCCHHHHHhhcC---cCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCC
Confidence 88888863 34689999999987 68899999999 5999773 1578889999998 999999987631 1111
Q ss_pred -cCC-----CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 178 -LCR-----PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 178 -~~~-----p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
..+ ++...--+++.+.+|+|+.| |.|+|++++++++.+.+.
T Consensus 218 ~~~~~~~~~~~~~~~vi~~~S~SK~~~~p----GlRiG~~~~~~~~~~~~~ 264 (402)
T PRK06107 218 PTPHLLAAAPELRDRVLVTNGVSKTYAMT----GWRIGYAAGPADLIAAIN 264 (402)
T ss_pred CCCCHHHhCcCccCCEEEEeccchhhcCc----ccceeeeecCHHHHHHHH
Confidence 111 11111135556668888765 789999999887766554
No 193
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=99.65 E-value=5.9e-15 Score=141.27 Aligned_cols=171 Identities=15% Similarity=0.158 Sum_probs=122.9
Q ss_pred cccHHHHHHHHHHHHHHHhCC--CeeeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITGY--DKISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~--~~~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
.+|..++++.+.+.+.+..|. +..++..++|++ +. .++++.+. +++|.|++++|.|+.+...++..|.+
T Consensus 73 ~~G~~~lr~aia~~~~~~~g~~~~~~~I~it~G~~~al---~~~~~~l~-----~~gd~v~v~~P~y~~~~~~~~~~g~~ 144 (409)
T PLN00143 73 TGGILPARRAIADYLSNDLPYQLSPDDVYLTLGCKHAA---EIIIKVLA-----RPEANILLPRPGFPDVETYAIFHHLE 144 (409)
T ss_pred CCCCHHHHHHHHHHHHhhcCCCCCHhhEEEecChHHHH---HHHHHHHc-----CCCCEEEEcCCCCcCHHHHHHHcCCE
Confidence 578888888888887776554 445677777774 33 22333322 68999999999998888888899999
Q ss_pred EEEeecCC-C-CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcc-ccccc-
Q psy7357 106 VEPVSVRK-D-GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMN-AQVGL- 178 (302)
Q Consensus 106 v~~i~~~~-~-g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~-~~~~~- 178 (302)
++.++.++ + ..+|+++|+++++ +++++++++|| |+||.+- +.+++|.++|+++++++|.|.++.- .....
T Consensus 145 ~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~ 221 (409)
T PLN00143 145 IRHFDLLPEKGWEVDLDAVEAIAD---ENTIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKP 221 (409)
T ss_pred EEEEeccCCCCCcCCHHHHHHhcc---cCCEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCC
Confidence 99999853 3 4689999999887 67899999999 5999873 2588899999999999999998731 11111
Q ss_pred CCC-CccC--Cc-EEEeCCCcccCCCCCCCCCcceeEEEe
Q psy7357 179 CRP-GDYG--SD-VSHLNLHKTFCIPHGGGGPGMGPIGVK 214 (302)
Q Consensus 179 ~~p-~~~g--aD-iv~~~~hK~l~~p~~~gGp~~G~l~~~ 214 (302)
..| ..+. .. |++.+.+|+|+. .|.|+||++++
T Consensus 222 ~~~~~~~~~~~~vi~~~SfSK~f~~----pGlRvG~~v~~ 257 (409)
T PLN00143 222 FVPMGLFASIVPVITLGSISKRWMI----PGWGLGWLVTC 257 (409)
T ss_pred CcchhhhcccCcEEEEccchhhcCC----CccceEEEEee
Confidence 011 1111 12 455555666554 49999999984
No 194
>PRK07179 hypothetical protein; Provisional
Probab=99.65 E-value=2e-15 Score=144.30 Aligned_cols=164 Identities=20% Similarity=0.265 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCC
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRK 113 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~ 113 (302)
+...++++.+++++|.+.+ +.+++|+.|+.+++.++. .+++.|+++...|.+....+...|.+++.++
T Consensus 99 ~~~~~le~~la~~~g~~~~-~~~~sG~~An~~~l~~l~--------~~g~~v~~~~~~h~s~~~~~~~~g~~~~~~~--- 166 (407)
T PRK07179 99 SPKPQFEKKLAAFTGFESC-LLCQSGWAANVGLLQTIA--------DPNTPVYIDFFAHMSLWEGVRAAGAQAHPFR--- 166 (407)
T ss_pred hHHHHHHHHHHHHhCCCcE-EEECCHHHHHHHHHHHhC--------CCCCEEEEECCcCHHHHHHHHHCCCeEEEec---
Confidence 5778889999999999876 557788887766655543 5688999988887766656667788776554
Q ss_pred CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccC------CCC-ccC
Q psy7357 114 DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLC------RPG-DYG 185 (302)
Q Consensus 114 ~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~------~p~-~~g 185 (302)
..|+++|++++++ .++++|++.+| |++|.+. |+++|.++|+++|+++|+|++|..+..+.. ..+ ..+
T Consensus 167 --~~d~~~l~~~l~~--~~~~lV~v~~v~n~tG~i~-pl~~I~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~ 241 (407)
T PRK07179 167 --HNDVDHLRRQIER--HGPGIIVVDSVYSTTGTIA-PLADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSR 241 (407)
T ss_pred --CCCHHHHHHHHHh--cCCeEEEECCCCCCCCccc-cHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHhcCCCCC
Confidence 2699999999973 24678888887 5899999 799999999999999999999864332110 111 124
Q ss_pred CcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 186 SDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 186 aDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
+|+++.+.||+++ +++|++++++++++.+
T Consensus 242 vdi~~~S~sK~~g-------~~~G~l~~~~~~~~~~ 270 (407)
T PRK07179 242 VHFITASLAKAFA-------GRAGIITCPRELAEYV 270 (407)
T ss_pred CCEEEeechHhhh-------ccCeEEEeCHHHHHHH
Confidence 6999999999885 3589999988776555
No 195
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=99.65 E-value=2.2e-15 Score=145.03 Aligned_cols=175 Identities=15% Similarity=0.047 Sum_probs=120.1
Q ss_pred cccHHHHHHHHHHHHHHHhCCCeeeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEE
Q psy7357 29 ARGYEQLIGELETDLCEITGYDKISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVE 107 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~ 107 (302)
.+|..++++.+.+++.+-.+ +..++..++|++ +...++.++. ++||.|++++|.|+.+...++..|++++
T Consensus 120 ~~g~~~lr~~ia~~~~~~~~-~~~~Iiit~G~~~al~~~~~~l~--------~pgd~Vlv~~P~y~~~~~~~~~~g~~~~ 190 (431)
T PRK15481 120 APVSPELHAWAARWLRDDCP-VAFEIDLTSGAIDAIERLLCAHL--------LPGDSVAVEDPCFLSSINMLRYAGFSAS 190 (431)
T ss_pred cCCCHHHHHHHHHHHhhccC-CcCeEEEecCcHHHHHHHHHHhC--------CCCCEEEEeCCCcHHHHHHHHHcCCeEE
Confidence 35555555544444433222 223566677774 3323333322 6899999999999888888999999999
Q ss_pred EeecCCCCCCCHHHHHHHHhccCCCeEEEEEe-cC-CCceeccc--cHHHHHHHHHHh-CCEEEEecCCc-ccccccCCC
Q psy7357 108 PVSVRKDGTIDFSDLETKVKKNKETLSCLMIT-YP-STFGVFEE--NITDVCELIHEH-GGQVYLDGANM-NAQVGLCRP 181 (302)
Q Consensus 108 ~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~-~P-n~~G~~~~--di~~I~~ia~~~-g~llivD~a~~-~~~~~~~~p 181 (302)
.+|++++| +|+++|+++++ +++++++++ || ||||..-+ ..++|.++|+++ +++++.|.++. .......++
T Consensus 191 ~v~~~~~g-~~~~~l~~~~~---~~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~~~ 266 (431)
T PRK15481 191 PVSVDAEG-MQPEKLERALA---QGARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPYHSV 266 (431)
T ss_pred eeccCCCC-CCHHHHHHHHh---cCCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCCCCC
Confidence 99997665 89999999997 577888887 88 59998741 346999999999 99999998763 111111111
Q ss_pred C--ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 182 G--DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 182 ~--~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
. ...--|++.|.+|+|+ | |.|+||+++++++.+.+
T Consensus 267 ~~~~~~~vi~~~SfSK~~~-~----GlRiG~~i~~~~~~~~~ 303 (431)
T PRK15481 267 IPQTTQRWALIRSVSKALG-P----DLRLAFVASDSATSARL 303 (431)
T ss_pred CcCCCCCEEEEeeeccccC-C----CceeEEEeCCHHHHHHH
Confidence 1 1111266666777776 5 89999999988776665
No 196
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=99.65 E-value=6.7e-15 Score=138.77 Aligned_cols=162 Identities=17% Similarity=0.144 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHH---hC-CCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQ---MA-GMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~---~~-g~~v~~i 109 (302)
....++++.++++.|.+.+ +..++|..|..+++ .+. ++||+||++...||....... .. ++++.
T Consensus 54 p~~~~le~~lA~leg~~~~-v~~~sG~aAi~~~l-~~l--------~~GD~VI~~~~~yg~~~~~~~~~~~~~~~~~~-- 121 (364)
T PRK07269 54 PTRAKLEETLAAIESADYA-LATSSGMSAIVLAF-SVF--------PVGSKVVAVRDLYGGSFRWFNQQEKEGRFHFT-- 121 (364)
T ss_pred ccHHHHHHHHHHHhCCCeE-EEeCCHHHHHHHHH-HHh--------CCCCEEEEecCCcCchHHHHHHHHhcCcEEEE--
Confidence 4578999999999998765 34566766553333 222 689999999998876655322 11 22221
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
...|+++++++++ ++|++|++++| |++|.+. |+++|+++||++|+++++|++..... ..+|-..|+|+
T Consensus 122 -----~~~d~~~l~~~i~---~~TklV~lesP~NPtg~~~-di~~I~~la~~~gi~vvvD~t~~~~~--~~~pl~~gaDi 190 (364)
T PRK07269 122 -----YANTEEELIAAIE---EDTDIVYIETPTNPLMVEF-DIEKVAKLAHAKGAKVIVDNTFYSPI--YQRPIELGADI 190 (364)
T ss_pred -----ecCCHHHHHHhcC---cCceEEEEECCCCCCCeee-CHHHHHHHHHHcCCEEEEECCCcccc--cCCchhhCCcE
Confidence 2258999999998 88999999999 5899888 89999999999999999999853222 34677789999
Q ss_pred EEeCCCcccCCCCCCCCCcceeEEEe-CCCCCCC
Q psy7357 189 SHLNLHKTFCIPHGGGGPGMGPIGVK-SHLAPFL 221 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~l 221 (302)
++.|.+|+++.+- ..-.|+++++ +++.+++
T Consensus 191 vv~S~tK~l~g~~---d~~gG~v~~~~~~l~~~~ 221 (364)
T PRK07269 191 VLHSATKYLSGHN---DVLAGVVVTNDLELYEKL 221 (364)
T ss_pred EEecCceeccCCC---cccceEEEeCcHHHHHHH
Confidence 9999999998431 1225778876 4555544
No 197
>PTZ00376 aspartate aminotransferase; Provisional
Probab=99.65 E-value=1.1e-15 Score=145.94 Aligned_cols=180 Identities=12% Similarity=0.180 Sum_probs=123.4
Q ss_pred CCCCCCcccccHHHHHHHHHHHHHHHhC--CCeeeEe--eCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCccc
Q psy7357 21 HPFIPQDQARGYEQLIGELETDLCEITG--YDKISFQ--PNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTN 95 (302)
Q Consensus 21 ~py~p~e~sqG~l~~~~e~~~~l~~l~g--~~~~~~~--~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~ 95 (302)
+.|.| ++|..++++.+.+++.+..+ .+..++. ...|+ .|...++++++.+. ++||+|++++|.|+.+
T Consensus 66 ~~Y~~---~~G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~~~-----~~Gd~Vlv~~P~y~~~ 137 (404)
T PTZ00376 66 KEYLP---IEGLQSFIEAAQKLLFGEASYALAEKRIATVQALSGTGALRLGFEFLKRFL-----PAGTTVYVSNPTWPNH 137 (404)
T ss_pred CCCCC---CCCCHHHHHHHHHHhcCCCccccccCeEEEeeccCcchHHHHHHHHHHHhc-----CCCCEEEEcCCCchhH
Confidence 44555 68998888888887755433 2333444 23444 44434444333332 6899999999999989
Q ss_pred HHHHHhCCCEEEEeecC-C-CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecC
Q psy7357 96 PASAQMAGMSVEPVSVR-K-DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGA 170 (302)
Q Consensus 96 ~~~~~~~g~~v~~i~~~-~-~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a 170 (302)
...++..|.+++.+|.. + +..+|++.+++++.+++++++++++++| ||||..- +++++|.++|+++|++++.|.+
T Consensus 138 ~~~~~~~G~~~~~v~l~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~ 217 (404)
T PTZ00376 138 VNIFKSAGLNVKEYRYYDPKTKGLDFDGMLEDLRTAPNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMA 217 (404)
T ss_pred HHHHHHcCCceeeccccCcccCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehh
Confidence 88999999999999983 2 4679999999999754355677888999 6999872 2688999999999999999998
Q ss_pred Cc-ccccc-------cCCCCccCCc-EEEeCCCcccCCCCCCCCCcceeEE
Q psy7357 171 NM-NAQVG-------LCRPGDYGSD-VSHLNLHKTFCIPHGGGGPGMGPIG 212 (302)
Q Consensus 171 ~~-~~~~~-------~~~p~~~gaD-iv~~~~hK~l~~p~~~gGp~~G~l~ 212 (302)
+. ..... +........+ |++.|.+|+|+.| |.|+|++.
T Consensus 218 Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~----GlRvG~~~ 264 (404)
T PTZ00376 218 YQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMGLY----GERIGALH 264 (404)
T ss_pred hcCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCccccc----ccccceEE
Confidence 62 11110 0000111113 5555566766654 99999984
No 198
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=99.64 E-value=1.2e-14 Score=137.11 Aligned_cols=174 Identities=13% Similarity=0.124 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCC-CEEEEcCCCCcccHHHHHhCCCEEEEeecCC-
Q psy7357 36 IGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHR-NVCLIPVSAHGTNPASAQMAGMSVEPVSVRK- 113 (302)
Q Consensus 36 ~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~-d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~- 113 (302)
..++++.+++.+|++..++..++|++. +..++++.+. .++ ++|+++++.|+.+...++..|.+++.+|.+.
T Consensus 61 ~~~lr~~ia~~~~~~~~~I~~t~G~~~--~l~~~~~~~~-----~~g~~~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~ 133 (364)
T PRK04781 61 PPGLRSALAALYGCAPEQLLIGRGSDE--AIDLLVRALC-----VPGRDAVLVTPPVFGMYAVCARLQNAPLVEVPLVDG 133 (364)
T ss_pred HHHHHHHHHHHhCcChHHEEEeCCHHH--HHHHHHHHhc-----CCCCCeEEEcCCChHHHHHHHHHcCCEEEEEecCCC
Confidence 468888999999998878888888742 2222233221 456 7899999988777777788999999999842
Q ss_pred -CC-CCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHH--hCCEEEEecCCc-ccccc-cCCCCccCC
Q psy7357 114 -DG-TIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHE--HGGQVYLDGANM-NAQVG-LCRPGDYGS 186 (302)
Q Consensus 114 -~g-~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~--~g~llivD~a~~-~~~~~-~~~p~~~ga 186 (302)
++ .+|++++.+.+.+ +++++|++++| |+||.+. +.+++.++++. +++++|+|.++. ..... .....+...
T Consensus 134 ~~~~~~d~~~l~~~~~~--~~~~lv~l~~p~NPTG~~~-~~~~~~~l~~~~~~~~~iI~Deay~~f~~~~~~~~~~~~~~ 210 (364)
T PRK04781 134 ADGFHADVPAIVAAALA--SNAKLVFLCSPSNPAGSAI-ALDQIERALQALQGKALVVVDEAYGEFSDVPSAVGLLARYD 210 (364)
T ss_pred ccCCCcCHHHHHHHHhc--cCCeEEEEcCCCCCCCCCc-CHHHHHHHHHhCCCCcEEEEeCcchhhcCCcchHHHHhhCC
Confidence 33 5799998766532 67899999999 5999987 67777777764 478999999863 11100 000111122
Q ss_pred cE-EEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 187 DV-SHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 187 Di-v~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
++ ++.+..|+|+ +.|.|+||+++++++++.+..
T Consensus 211 ~vi~~~SfSK~~g----l~GlRvGy~v~~~~l~~~l~~ 244 (364)
T PRK04781 211 NLAVLRTLSKAHA----LAAARIGSLIANAELIAVLRR 244 (364)
T ss_pred CEEEEecChhhcc----cccceeeeeeCCHHHHHHHHh
Confidence 34 4444555554 459999999999877766543
No 199
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=99.64 E-value=9.2e-15 Score=137.78 Aligned_cols=179 Identities=17% Similarity=0.148 Sum_probs=126.0
Q ss_pred ccHHHHHHHHHHHHHHHhCC--CeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEE
Q psy7357 30 RGYEQLIGELETDLCEITGY--DKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVE 107 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~--~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~ 107 (302)
+|..++++.+.+++.+..|. +..++..++|++.. ..++++.+. +++|.|+++.|.|..+...++..|.+++
T Consensus 65 ~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~--l~~~~~~~~-----~~gd~v~v~~P~y~~~~~~~~~~g~~~~ 137 (368)
T PRK03317 65 RDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEI--LQQLLQAFG-----GPGRTALGFVPSYSMHPIIARGTHTEWV 137 (368)
T ss_pred CchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHH--HHHHHHHhc-----CCCCEEEEeCCChHHHHHHHHhcCCeeE
Confidence 35556666666666665554 45678888887422 222233222 6899999999998888888888999999
Q ss_pred EeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcc-cccccCCCC---
Q psy7357 108 PVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMN-AQVGLCRPG--- 182 (302)
Q Consensus 108 ~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~-~~~~~~~p~--- 182 (302)
.++.+++..+|++++++++++ .++++|++++| |++|.+. +.+++.++++..++++|+|.++.. ...+.....
T Consensus 138 ~~~~~~~~~~d~~~l~~~~~~--~~~~~i~l~~p~NPtG~~~-~~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~ 214 (368)
T PRK03317 138 EGPRAADFTLDVDAAVAAIAE--HRPDVVFLTSPNNPTGTAL-PLDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLL 214 (368)
T ss_pred EcccCCCCCCCHHHHHHHHhc--cCCCEEEEeCCCCCCCCCC-CHHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHH
Confidence 998766678999999999974 35678899999 5899998 699999999988999999998741 111111100
Q ss_pred ccCCcE-EEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 183 DYGSDV-SHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 183 ~~gaDi-v~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
....++ ++.+.+|.|+. .|.|+|++++++++++.+.
T Consensus 215 ~~~~~~i~~~SfSK~~g~----~GlRiG~~~~~~~~~~~l~ 251 (368)
T PRK03317 215 PEYPRLVVSRTMSKAFAF----AGGRLGYLAAAPAVVDALR 251 (368)
T ss_pred HhCCCEEEEEechhhhcc----chhhhhhhhCCHHHHHHHH
Confidence 111244 44455666654 4899999999887766554
No 200
>PRK08363 alanine aminotransferase; Validated
Probab=99.64 E-value=4.3e-15 Score=141.54 Aligned_cols=175 Identities=15% Similarity=0.169 Sum_probs=122.1
Q ss_pred cccHHHHHHHHHHHHHHHhC--CCeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITG--YDKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g--~~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
.+|..++++.+.+.+.+..| .+..++..++|+ +|...++.++. +++|.|+++++.|+.+...++..|.+
T Consensus 69 ~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~--------~~gd~Vl~~~p~y~~~~~~~~~~g~~ 140 (398)
T PRK08363 69 SEGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEALQLIFGALL--------DPGDEILIPGPSYPPYTGLVKFYGGV 140 (398)
T ss_pred CCCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhC--------CCCCEEEEcCCCCcchHHHHHHcCCE
Confidence 46777777777777766556 344566666665 44433333332 68999999999998888888889999
Q ss_pred EEEe-ecCCC-CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcc-cccc-c
Q psy7357 106 VEPV-SVRKD-GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMN-AQVG-L 178 (302)
Q Consensus 106 v~~i-~~~~~-g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~-~~~~-~ 178 (302)
++.+ +.+++ ..+|+++++++++ +++++|++++| |++|... .++++|.++|+++|+++|+|.++.. .... .
T Consensus 141 ~v~~~~~~~~~~~~d~~~l~~~~~---~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~ 217 (398)
T PRK08363 141 PVEYRTIEEEGWQPDIDDIRKKIT---EKTKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKH 217 (398)
T ss_pred EEEeccccccCCcCCHHHHHhhCC---cceEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcc
Confidence 8888 55544 4689999999997 78899999998 5899874 1489999999999999999998631 1111 0
Q ss_pred CCCCcc--CCcE-EEeCCCcccCCCCCCCCCcceeEEE--eCCCC
Q psy7357 179 CRPGDY--GSDV-SHLNLHKTFCIPHGGGGPGMGPIGV--KSHLA 218 (302)
Q Consensus 179 ~~p~~~--gaDi-v~~~~hK~l~~p~~~gGp~~G~l~~--~~~l~ 218 (302)
...... ...+ ++.+.+|+|+.| |.|+|++++ +++++
T Consensus 218 ~~~~~~~~~~~vi~~~SfSK~~~~~----GlRiG~~~~~~~~~~~ 258 (398)
T PRK08363 218 VSPGSLTKDVPVIVMNGLSKVYFAT----GWRLGYIYFVDPEGKL 258 (398)
T ss_pred cCHHHcCcCCcEEEEecchhccCCc----cceEEEEEEeCcHHHH
Confidence 010111 1134 455667776654 899999998 44443
No 201
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=99.64 E-value=4.7e-15 Score=138.36 Aligned_cols=171 Identities=20% Similarity=0.219 Sum_probs=126.8
Q ss_pred cccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEE
Q psy7357 29 ARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEP 108 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~ 108 (302)
..|..+...++++.++++++.+. .+..++|+++.++++.++. +++|+|+++++.|+.+...++..|.+++.
T Consensus 56 ~~g~~~~~~~l~~~la~~~~~~~-~i~~~~G~~~~~~~l~~~~--------~~gd~v~~~~~~~~~~~~~~~~~g~~~~~ 126 (360)
T TIGR00858 56 VSGNSPLHEELEEELAEWKGTEA-ALLFSSGYLANVGVISALV--------GKGDLILSDALNHASLIDGCRLSGARVRR 126 (360)
T ss_pred ccCCcHHHHHHHHHHHHHhCCCC-EEEECchHHHHHHHHHHhC--------CCCCEEEEEccccHHHHHHHHhcCCceEE
Confidence 35656778889999999999654 5667778765544333322 67899999999988887778888999988
Q ss_pred eecCCCCCCCHHHHHHHHhccC-CCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccC-C-----
Q psy7357 109 VSVRKDGTIDFSDLETKVKKNK-ETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLC-R----- 180 (302)
Q Consensus 109 i~~~~~g~iD~~~l~~~i~~~~-~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~-~----- 180 (302)
++. +|++++++.++++. +++++|++.++ |++|... |+++|.++|+++|+++|+|+++........ .
T Consensus 127 ~~~-----~d~~~l~~~~~~~~~~~~~~v~~~~~~~~~G~~~-~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~ 200 (360)
T TIGR00858 127 YRH-----NDVEHLERLLEKNRGERRKLIVTDGVFSMDGDIA-PLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEH 200 (360)
T ss_pred ecC-----CCHHHHHHHHHHcccCCCeEEEEeCCccCCCCCc-CHHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHh
Confidence 774 68999999997532 35788888877 4789888 799999999999999999999753221110 0
Q ss_pred --CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 181 --PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 181 --p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
....+.||++.+.+|+|+. ++ |++++++++.+.+
T Consensus 201 ~~~~~~~~~i~i~s~sK~~~~------~g-G~~~~~~~~~~~~ 236 (360)
T TIGR00858 201 FGLKPEPVDIQVGTLSKALGS------YG-AYVAGSQALIDYL 236 (360)
T ss_pred cCCCccCCcEEEEechhhhhc------cC-cEEEcCHHHHHHH
Confidence 0123568999999998863 22 8888887766554
No 202
>PRK07568 aspartate aminotransferase; Provisional
Probab=99.64 E-value=3.7e-14 Score=134.83 Aligned_cols=176 Identities=16% Similarity=0.198 Sum_probs=119.6
Q ss_pred cccHHHHHHHHHHHHHHHhC--CCeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITG--YDKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g--~~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
.+|..++++++.+.+.. .| ++..++..++|+ ++...++.++. ++||+|+++++.|+.+...++..|.+
T Consensus 65 ~~g~~~lr~~ia~~~~~-~~~~~~~~~i~~t~G~~~al~~~~~~l~--------~~gd~Vl~~~p~y~~~~~~~~~~g~~ 135 (397)
T PRK07568 65 SQGIPELREAFAKYYKK-WGIDVEPDEILITNGGSEAILFAMMAIC--------DPGDEILVPEPFYANYNGFATSAGVK 135 (397)
T ss_pred CCCCHHHHHHHHHHHHH-hCCCCCcceEEEcCChHHHHHHHHHHhc--------CCCCEEEEecCCCccHHHHHHHcCCE
Confidence 46766666666655542 33 455566666665 44423332222 67899999999888777777889999
Q ss_pred EEEeecCC-CCC--CCHHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCCcc-cccc-
Q psy7357 106 VEPVSVRK-DGT--IDFSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGANMN-AQVG- 177 (302)
Q Consensus 106 v~~i~~~~-~g~--iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~~~-~~~~- 177 (302)
++.++.+. +|. .|+++++++++ +++++|++++| |++|.+.+ ++++|+++|+++|+++++|.++.- ....
T Consensus 136 ~~~v~~~~~~g~~~~~~~~l~~~~~---~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~ 212 (397)
T PRK07568 136 IVPVTTKIEEGFHLPSKEEIEKLIT---PKTKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGL 212 (397)
T ss_pred EEEeecCcccCCCCCCHHHHHHhcC---ccceEEEEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCC
Confidence 99999863 442 36899999987 68899999999 58998742 589999999999999999998631 1111
Q ss_pred -cCCCCcc---CCc-EEEeCCCcccCCCCCCCCCcceeEEEe-CCCCCC
Q psy7357 178 -LCRPGDY---GSD-VSHLNLHKTFCIPHGGGGPGMGPIGVK-SHLAPF 220 (302)
Q Consensus 178 -~~~p~~~---gaD-iv~~~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~ 220 (302)
..+...+ ..+ +++.|.+|+|+.| |.|+|+++++ +++++.
T Consensus 213 ~~~s~~~~~~~~~~~i~~~S~SK~~~~~----G~R~G~~~~~~~~~~~~ 257 (397)
T PRK07568 213 KYTSALSLEGLEDRVIIIDSVSKRYSAC----GARIGCLISKNKELIAA 257 (397)
T ss_pred CccChhhcCCCcCCEEEEecchhhccCC----CcceEEEecCCHHHHHH
Confidence 1111111 112 6666677777654 8999999985 455543
No 203
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=99.63 E-value=1.6e-14 Score=136.84 Aligned_cols=166 Identities=19% Similarity=0.179 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH----HHhCCCEEEE
Q psy7357 33 EQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS----AQMAGMSVEP 108 (302)
Q Consensus 33 l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~----~~~~g~~v~~ 108 (302)
-.....+++.+++|.|.+.+.+ ..||..|..++++++. ++||+|++++..|+..... ....|+++.+
T Consensus 54 nPt~~~le~~la~Le~g~~a~~-~~SGmaAi~~~l~~ll--------~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~ 124 (386)
T PF01053_consen 54 NPTVRALEQRLAALEGGEDALL-FSSGMAAISAALLALL--------KPGDHIVASDDLYGGTYRLLEELLPRFGVEVTF 124 (386)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEE-ESSHHHHHHHHHHHHS---------TTBEEEEESSSSHHHHHHHHHCHHHTTSEEEE
T ss_pred cccHHHHHHHHHHhhcccceee-ccchHHHHHHHHHhhc--------ccCCceEecCCccCcchhhhhhhhcccCcEEEE
Confidence 3678899999999999977654 4678776656666554 6799999999888765543 4468999998
Q ss_pred eecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhC-CEEEEecCCcccccccCCCCccCC
Q psy7357 109 VSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHG-GQVYLDGANMNAQVGLCRPGDYGS 186 (302)
Q Consensus 109 i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g-~llivD~a~~~~~~~~~~p~~~ga 186 (302)
++. .|+++++++++ ++|++|+++.| |++.-+. |+++|+++||++| ++++||.. ++.....+|-++|+
T Consensus 125 ~d~-----~d~~~l~~~l~---~~t~~v~~EspsNP~l~v~-Dl~~i~~~a~~~g~~~~vVDnT--~atp~~~~pL~~Ga 193 (386)
T PF01053_consen 125 VDP-----TDLEALEAALR---PNTKLVFLESPSNPTLEVP-DLEAIAKLAKEHGDILVVVDNT--FATPYNQNPLELGA 193 (386)
T ss_dssp EST-----TSHHHHHHHHC---TTEEEEEEESSBTTTTB----HHHHHHHHHHTTT-EEEEECT--TTHTTTC-GGGGT-
T ss_pred eCc-----hhHHHHHhhcc---ccceEEEEEcCCCcccccc-cHHHHHHHHHHhCCceEEeecc--ccceeeeccCcCCc
Confidence 875 48999999999 89999999999 6876777 8999999999999 99999964 55555567889999
Q ss_pred cEEEeCCCcccCCCCCCCCCcceeEEEeC--CCCCCC
Q psy7357 187 DVSHLNLHKTFCIPHGGGGPGMGPIGVKS--HLAPFL 221 (302)
Q Consensus 187 Div~~~~hK~l~~p~~~gGp~~G~l~~~~--~l~~~l 221 (302)
||++.|+.|.+++. +.--+|.+++++ ++.+++
T Consensus 194 Divv~S~TKyl~Gh---sdv~~G~vv~~~~~~~~~~l 227 (386)
T PF01053_consen 194 DIVVHSATKYLSGH---SDVMGGAVVVNGSSELYDRL 227 (386)
T ss_dssp SEEEEETTTTTTTS---SSE-EEEEEESSHHHHHHHH
T ss_pred eEEEeeccccccCC---cceeeEEEEECchhhhhhhh
Confidence 99999999999732 122378888875 454443
No 204
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=99.63 E-value=1.3e-15 Score=142.91 Aligned_cols=171 Identities=19% Similarity=0.179 Sum_probs=122.7
Q ss_pred HHHHHHHHHHhCCCe-eeEeeCchHHH-HHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCC
Q psy7357 37 GELETDLCEITGYDK-ISFQPNSGAQG-EYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKD 114 (302)
Q Consensus 37 ~e~~~~l~~l~g~~~-~~~~~~~Ga~a-~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~ 114 (302)
.++++.+++.+|.+. .++..++|++. ...+..++. ++||+|+++++.|..+...++..|++++.+|.+++
T Consensus 66 ~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~~~~~~~--------~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~ 137 (356)
T PRK04870 66 AALKAALRAAMGVPAGADVLLGNGSDELIQLLALACA--------KPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLTAD 137 (356)
T ss_pred HHHHHHHHHHhCcCCCCcEEEcCCHHHHHHHHHHHhc--------CCCCEEEECCCCHHHHHHHHHHcCCEEEEecCCCC
Confidence 577888889999864 36777888753 322222222 67999999999988777788899999999999877
Q ss_pred CCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCc-ccccc-cCCCCccCCcEEEe
Q psy7357 115 GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANM-NAQVG-LCRPGDYGSDVSHL 191 (302)
Q Consensus 115 g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~-~~~~~-~~~p~~~gaDiv~~ 191 (302)
+.+|+++|++++++ .++++|++++| |++|.+. +.+++.++++..+.++|+|.++. ..... ........--+++.
T Consensus 138 ~~~d~~~l~~~~~~--~~~~~v~l~~p~NPtG~~~-~~~~~~~i~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~~~ 214 (356)
T PRK04870 138 FTLDLPAMLAAIAE--HRPALVFLAYPNNPTGNLF-DDADVERIIEAAPGLVVVDEAYQPFAGDSWLPRLARFPNLLVMR 214 (356)
T ss_pred CCCCHHHHHHHhhc--CCCCEEEEcCCCCCCCCCC-CHHHHHHHHHHCCCEEEEECCchhhcCcchHHHHhhCCCEEEEe
Confidence 88999999999963 47888999999 5999987 68888888776688999999863 11101 11111222225555
Q ss_pred CCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 192 NLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 192 ~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
+.+| ++ +.|.|+|++++++++++.+..
T Consensus 215 S~SK-~~----~~GlRiG~~i~~~~~i~~~~~ 241 (356)
T PRK04870 215 TVSK-LG----LAGLRLGYLAGHPAWIAELDK 241 (356)
T ss_pred cchh-hh----hHHHhhhhhhCCHHHHHHHHH
Confidence 5556 44 448999999998877665543
No 205
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=99.63 E-value=1.1e-14 Score=135.54 Aligned_cols=162 Identities=19% Similarity=0.227 Sum_probs=118.6
Q ss_pred HHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCCC
Q psy7357 37 GELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGT 116 (302)
Q Consensus 37 ~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g~ 116 (302)
.++++.+++++|.+..++..++|++..+..+..+ + .++ +|+++++.|..+...++..|++++.++
T Consensus 50 ~~lr~~la~~~~~~~~~i~~t~G~~~~i~~~~~~--l------~~g-~vl~~~p~y~~~~~~~~~~g~~~~~~~------ 114 (330)
T TIGR01140 50 DELRAAAAAYYGLPAASVLPVNGAQEAIYLLPRL--L------APG-RVLVLAPTYSEYARAWRAAGHEVVELP------ 114 (330)
T ss_pred HHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHH--h------CCC-eEEEeCCCcHHHHHHHHHcCCEEEEeC------
Confidence 6888889999998877777778875332332221 1 455 688889988877778889999998887
Q ss_pred CCHHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCCcccccccCCC----CccCCcEE
Q psy7357 117 IDFSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGANMNAQVGLCRP----GDYGSDVS 189 (302)
Q Consensus 117 iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~~~~~~~~~~p----~~~gaDiv 189 (302)
|++++++.++ ++++|++++| |++|.+.+ .+++|+++|+++|+++|+|.++...... .+. ...+.+++
T Consensus 115 -d~~~l~~~~~----~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~-~~~~~~~~~~~~~i~ 188 (330)
T TIGR01140 115 -DLDRLPAALE----ELDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPD-ASLAPQAARFPGLVV 188 (330)
T ss_pred -CHHHHHhhcc----cCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCc-cchhhHhccCCCEEE
Confidence 8899998885 4568889999 59998851 3777888899999999999987311111 111 11244688
Q ss_pred EeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 190 HLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 190 ~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
+.+.+|+|+.| |.|+|++++++++++.+..
T Consensus 189 ~~S~SK~~g~~----G~R~G~i~~~~~~~~~l~~ 218 (330)
T TIGR01140 189 LRSLTKFFGLA----GLRLGFVVAHPALLARLRE 218 (330)
T ss_pred EEecchhhcCc----hhhhhheeCCHHHHHHHHh
Confidence 88899988755 7889999999877666543
No 206
>PLN02231 alanine transaminase
Probab=99.63 E-value=4.2e-15 Score=146.54 Aligned_cols=183 Identities=17% Similarity=0.257 Sum_probs=129.5
Q ss_pred cccHHHHHHHHHHHHHHHhCC--CeeeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITGY--DKISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~--~~~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
++|..++++.+.+.+.+..|. +..++..++|++ |...++.++. ..++|.|+++.|.|+.+...++..|.+
T Consensus 167 s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l~-------~~~gd~Vli~~P~Y~~y~~~~~~~g~~ 239 (534)
T PLN02231 167 SQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI-------RSEKDGILCPIPQYPLYSASIALHGGT 239 (534)
T ss_pred CCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHhc-------cCCCCEEEEeCCCChhHHHHHHHcCCE
Confidence 799999999999999887674 446777788874 3433333322 136899999999999888888999999
Q ss_pred EEEeecCCC--CCCCHHHHHHHHhccC---CCeEEEEEecC-CCceec--cccHHHHHHHHHHhCCEEEEecCCcc-cc-
Q psy7357 106 VEPVSVRKD--GTIDFSDLETKVKKNK---ETLSCLMITYP-STFGVF--EENITDVCELIHEHGGQVYLDGANMN-AQ- 175 (302)
Q Consensus 106 v~~i~~~~~--g~iD~~~l~~~i~~~~---~~t~~V~i~~P-n~~G~~--~~di~~I~~ia~~~g~llivD~a~~~-~~- 175 (302)
++.++++++ ..+|+++|++++++.+ .++++|+++|| |+||.+ .+++++|.++|+++|+++|.|.++.- ..
T Consensus 240 ~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~ 319 (534)
T PLN02231 240 LVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYV 319 (534)
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccC
Confidence 999999753 4799999999997421 26899999999 699987 22689999999999999999998631 11
Q ss_pred cc--cCC-------CCc--cCCcEE-EeCCCcccCCCCCCCCCcceeEEE---eCCCCCCC
Q psy7357 176 VG--LCR-------PGD--YGSDVS-HLNLHKTFCIPHGGGGPGMGPIGV---KSHLAPFL 221 (302)
Q Consensus 176 ~~--~~~-------p~~--~gaDiv-~~~~hK~l~~p~~~gGp~~G~l~~---~~~l~~~l 221 (302)
.. ..+ ++. ....++ +.|..|+|. ++.|.|+||+.+ ++++.+.+
T Consensus 320 ~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~---g~pGlRiGy~~~~~~~~~l~~~l 377 (534)
T PLN02231 320 PDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYY---GECGKRGGYMEVTGFTSDVREQI 377 (534)
T ss_pred CCCCcccHHHHHhhhccccCCceEEEEeccCcccc---cCCccceEEEEEecCCHHHHHHH
Confidence 00 001 010 011244 445667652 234899999986 44555443
No 207
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=99.63 E-value=1.5e-14 Score=140.82 Aligned_cols=176 Identities=16% Similarity=0.202 Sum_probs=125.0
Q ss_pred cccHHHHHHHHHHHHHHHhC----CCeeeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHH-hC
Q psy7357 29 ARGYEQLIGELETDLCEITG----YDKISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQ-MA 102 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g----~~~~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~-~~ 102 (302)
.+|..++++++.+.+.+.+| ++..++..++|++ +....+.++. ++||.|++++|.|+.+...+. ..
T Consensus 85 ~~G~~~LR~aiA~~l~~~~~~~~~v~~~~Iiit~Ga~~al~~l~~~l~--------~pGd~Vlv~~P~Y~~~~~~~~~~~ 156 (468)
T PLN02450 85 YHGLPAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLA--------EPGDAFLLPTPYYPGFDRDLKWRT 156 (468)
T ss_pred CCChHHHHHHHHHHHHHhhCCCCCcChHHeEEccChHHHHHHHHHHhC--------CCCCEEEECCCCCCchHHHHhhcC
Confidence 57888888888888887766 3555777888874 3333333332 689999999999988866666 58
Q ss_pred CCEEEEeecCC--CCCCCHHHHHHHHhcc---CCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCccc
Q psy7357 103 GMSVEPVSVRK--DGTIDFSDLETKVKKN---KETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMNA 174 (302)
Q Consensus 103 g~~v~~i~~~~--~g~iD~~~l~~~i~~~---~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~~ 174 (302)
|.+++.+|+++ +..+|++++++++++. ..++++|+++|| ||||.+- +.+++|.++|+++|+++|.|.++...
T Consensus 157 g~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~ 236 (468)
T PLN02450 157 GVEIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGT 236 (468)
T ss_pred CcEEEEEecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEcccccc
Confidence 99999999863 3467999999988631 237899999999 5999862 25888999999999999999987421
Q ss_pred -ccc--cCCC----Cc-------cCCc-EEEeCCCcccCCCCCCCCCcceeEEEeCC
Q psy7357 175 -QVG--LCRP----GD-------YGSD-VSHLNLHKTFCIPHGGGGPGMGPIGVKSH 216 (302)
Q Consensus 175 -~~~--~~~p----~~-------~gaD-iv~~~~hK~l~~p~~~gGp~~G~l~~~~~ 216 (302)
... ..+. .. ..-. +++.+..|+|+. .|.|+|+++++++
T Consensus 237 ~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l----~GlRiG~li~~~~ 289 (468)
T PLN02450 237 VFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGL----PGFRVGAIYSNDE 289 (468)
T ss_pred ccCCCCcccHHHHhhhcccccCCCCCcEEEEEeccccCCC----CCccEEEEEECCH
Confidence 111 1010 00 0112 455556666654 4999999999754
No 208
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=99.63 E-value=4.9e-15 Score=140.07 Aligned_cols=171 Identities=18% Similarity=0.187 Sum_probs=127.2
Q ss_pred cccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEE
Q psy7357 29 ARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEP 108 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~ 108 (302)
.+|..+++.++++++++++|.+. .+..++|+++.++++.++. +++|.|+++++.|+++...+...|.+++.
T Consensus 73 ~~g~~~l~~~l~~~l~~~~g~~~-~i~~~sG~~a~~~a~~~~~--------~~gd~vi~~~~~~~~~~~~~~~~g~~~~~ 143 (385)
T TIGR01825 73 IAGTLRLHEELEEKLAKFKKTEA-ALVFQSGFNTNQGVLSALL--------RKGDIVLSDELNHASIIDGLRLTKATKKI 143 (385)
T ss_pred ccCCcHHHHHHHHHHHHHhCCCc-EEEECcHHHHHHHHHHHhC--------CCCCEEEEEccccHHHHHHHHhcCCceEE
Confidence 67889999999999999999765 4667788876644444432 68899999999988776666677888776
Q ss_pred eecCCCCCCCHHHHHHHHhccC-CCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCccccccc------C-
Q psy7357 109 VSVRKDGTIDFSDLETKVKKNK-ETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGL------C- 179 (302)
Q Consensus 109 i~~~~~g~iD~~~l~~~i~~~~-~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~------~- 179 (302)
++ .+|++++++.+.++. +++++|++.++ |++|.+. |+++|.++|+++|+++++|+++....... .
T Consensus 144 ~~-----~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~-~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~ 217 (385)
T TIGR01825 144 YK-----HADMDDLDRVLRENPSYGKKLIVTDGVFSMDGDVA-PLPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHH 217 (385)
T ss_pred eC-----CCCHHHHHHHHHhhccCCCeEEEEecCCcCCCCcc-CHHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhh
Confidence 54 478999999887432 36788877765 6889998 79999999999999999999974321110 0
Q ss_pred CCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 180 RPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 180 ~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
.....+.|+++.+.+|+|+. + +|++++++++++.+
T Consensus 218 ~~~~~~~~i~~~s~sK~~~~------~-gG~~~~~~~~~~~~ 252 (385)
T TIGR01825 218 FGLEDKVDIQVGTLSKAIGV------V-GGYAAGHKELIEYL 252 (385)
T ss_pred cCCCcCCcEEEEeccHHhhc------C-CCEEecCHHHHHHH
Confidence 01124578889999998863 2 28888887766654
No 209
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=99.63 E-value=3.5e-15 Score=139.82 Aligned_cols=191 Identities=23% Similarity=0.257 Sum_probs=133.8
Q ss_pred CCCCCCCcccccHHHHHHHHHHHHHHHhC--CCee-eEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH
Q psy7357 20 MHPFIPQDQARGYEQLIGELETDLCEITG--YDKI-SFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP 96 (302)
Q Consensus 20 ~~py~p~e~sqG~l~~~~e~~~~l~~l~g--~~~~-~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~ 96 (302)
.+-|.| ++|..++.+++.+.+.+-.| .+.. ++.+++|+.+....+..+.. .+++++|++++|.|+.+.
T Consensus 37 ~~~Y~~---~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~~~~~~~~~~~------~~~~~~vlv~~P~y~~~~ 107 (363)
T PF00155_consen 37 FLGYPP---PQGYPELREAIADFLGRRYGVPVDPEANILVTSGAQAALFLLLRLLK------INPGDTVLVPDPCYPSYI 107 (363)
T ss_dssp CTSSTC---TTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHHHHHHHHHHHH------SSTTSEEEEEESSSTHHH
T ss_pred cccCCC---chhhHHHHHHHHHHhhhccCcccccceEEEEecccccchhhhhhccc------ccccccceecCCcccccc
Confidence 344544 56777777776666664444 4445 77888888644333322221 157899999999999888
Q ss_pred HHHHhCCCEEEEeecC--CCCCCCHHHHHHHHhccCC---CeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEe
Q psy7357 97 ASAQMAGMSVEPVSVR--KDGTIDFSDLETKVKKNKE---TLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLD 168 (302)
Q Consensus 97 ~~~~~~g~~v~~i~~~--~~g~iD~~~l~~~i~~~~~---~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD 168 (302)
..++..|.+++.+|++ .++.+|+++|++.+++.+. ++++|++++| |+||..- +++++|.++|+++|+++++|
T Consensus 108 ~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~D 187 (363)
T PF00155_consen 108 EAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVD 187 (363)
T ss_dssp HHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEE
T ss_pred ccccccCceeeeccccccccccccccccccccccccccccccceeeecccccccccccccccccchhhhhcccccceeee
Confidence 8999999999999975 4678999999999984311 5689999999 5899763 25777777799999999999
Q ss_pred cCCcccccccCC-----C-CccCCc-EEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 169 GANMNAQVGLCR-----P-GDYGSD-VSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 169 ~a~~~~~~~~~~-----p-~~~gaD-iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
.++......-.. . .+.+.+ +++.|++|+|+.| |.|+|++++++++.+.+..
T Consensus 188 e~y~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~----GlRvG~i~~~~~~~~~l~~ 245 (363)
T PF00155_consen 188 EAYSDLIFGDPDFGPIRSLLDEDDNVIVVGSLSKSFGLP----GLRVGYIVAPPELIERLRR 245 (363)
T ss_dssp ETTTTGBSSSSHTHHHHGHHTTTSTEEEEEESTTTTTSG----GGTEEEEEEEHHHHHHHHH
T ss_pred eceeccccCCCccCcccccccccccceeeeecccccccc----ccccccccchhhhhhhhhh
Confidence 987422211000 0 112234 7777777877655 8899999998877776643
No 210
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=99.63 E-value=2e-14 Score=135.99 Aligned_cols=178 Identities=16% Similarity=0.117 Sum_probs=116.3
Q ss_pred ccHHHHHHHHHHHHHHHhC----CCeeeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCC-EEEEcCCCCcccHHHHHhCC
Q psy7357 30 RGYEQLIGELETDLCEITG----YDKISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRN-VCLIPVSAHGTNPASAQMAG 103 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g----~~~~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d-~Vlv~~~~hg~~~~~~~~~g 103 (302)
+|..++++.+.+.+.+.++ ++..++..++|++ +...++.++. .+++ +|++++|.|+.+...++..|
T Consensus 66 ~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~al~~~~~~~~--------~~g~~~Vlv~~P~y~~~~~~~~~~g 137 (374)
T PRK02610 66 GGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDELIRSLLIATC--------LGGEGSILVAEPTFSMYGILAQTLG 137 (374)
T ss_pred CchHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHHHHHHHHHHc--------CCCCCeEEEcCCChHHHHHHHHHcC
Confidence 4655555555554443321 5556788888875 3322222222 3454 89999999988888889999
Q ss_pred CEEEEeecCCC-CCCCHHHHHHHHhcc-CCCeEEEEEecC-CCceeccccHHHHHHHHH-HhCCEEEEecCCcccccccC
Q psy7357 104 MSVEPVSVRKD-GTIDFSDLETKVKKN-KETLSCLMITYP-STFGVFEENITDVCELIH-EHGGQVYLDGANMNAQVGLC 179 (302)
Q Consensus 104 ~~v~~i~~~~~-g~iD~~~l~~~i~~~-~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~-~~g~llivD~a~~~~~~~~~ 179 (302)
.+++.+|.+++ ..+|+++|++++++. .+++++|+++|| ||||..- +.+++.++++ .+++++|.|.++.- +....
T Consensus 138 ~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~NPTG~~~-s~~~l~~l~~~~~~~~iI~De~Y~~-~~~~~ 215 (374)
T PRK02610 138 IPVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVVHPNSPTGNPL-TAAELEWLRSLPEDILVVIDEAYFE-FSQTT 215 (374)
T ss_pred CEEEEecCCcccCCCCHHHHHHHHHhhcCCCceEEEEeCCCCCCCCCC-CHHHHHHHHhccCCcEEEEeccccc-cCccc
Confidence 99999998653 679999999998731 147899999999 5999885 3444444432 14899999998631 11100
Q ss_pred CCC--ccCCc-EEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 180 RPG--DYGSD-VSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 180 ~p~--~~gaD-iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
.+. ....+ |++.|..|+|+.| |.|+||+++++++++.+
T Consensus 216 ~~~~~~~~~~~ivi~SfSK~~g~~----GlRiG~~v~~~~l~~~l 256 (374)
T PRK02610 216 LVGELAQHPNWVILRTFSKAFRLA----AHRVGYAIGHPELIAVL 256 (374)
T ss_pred hHHHHhcCCCEEEEEecchhccCc----ccceeeeecCHHHHHHH
Confidence 010 11123 5556666766554 89999999987776655
No 211
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=99.62 E-value=1.7e-15 Score=143.55 Aligned_cols=164 Identities=15% Similarity=0.076 Sum_probs=120.1
Q ss_pred cHHHHHHHHHHHHHHHhCCCe--eeE-eeCchHHHHHHHHHHHHHHHHhhcCC-CCCEEEEcCCCCcccHHH--HHhCCC
Q psy7357 31 GYEQLIGELETDLCEITGYDK--ISF-QPNSGAQGEYAGLRAIQCYHQAQDAH-HRNVCLIPVSAHGTNPAS--AQMAGM 104 (302)
Q Consensus 31 G~l~~~~e~~~~l~~l~g~~~--~~~-~~~~Ga~a~~a~l~a~~~~~~~~g~~-~~d~Vlv~~~~hg~~~~~--~~~~g~ 104 (302)
-+.+.+++.++.+++++|++. ..+ ..++|+.+..+++.++. + +++.|++ ...|+..... ++..|+
T Consensus 45 ~f~~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~~~~~l~--------~~~~~~vi~-~g~f~~~~~~~~~~~~g~ 115 (378)
T PRK03080 45 PVKALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEMALWSLL--------GARRVDHLA-WESFGSKWATDVVKQLKL 115 (378)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCceEEEECCchHHHHHHHHHhcC--------CCCcceEEE-eCHHHHHHHHHHHhhcCC
Confidence 367899999999999999842 233 33577777656655542 3 3445444 5678776442 356799
Q ss_pred -EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEec-CCCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCC
Q psy7357 105 -SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITY-PSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPG 182 (302)
Q Consensus 105 -~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~-Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~ 182 (302)
+++.++.++++.+|++++ + . ++.|.+++ .|.+|++. |+++|++ |++|+++++|++|.++...+ +..
T Consensus 116 ~~v~~~~~~~g~~~d~~~i----~---~-~~~V~~~h~~t~tG~~~-pi~~I~~--~~~g~~~vVDa~qs~G~~pi-dv~ 183 (378)
T PRK03080 116 EDPRVLEADYGSLPDLSAV----D---F-DRDVVFTWNGTTTGVRV-PVARWIG--ADREGLTICDATSAAFALPL-DWS 183 (378)
T ss_pred CCceEeccCCCCCCCHhhc----C---C-CCCEEEEecCCccceec-cchhhcc--ccCCCeEEEecccccccCCC-CHH
Confidence 999999887778888763 3 1 23455555 46899999 7999999 88999999999986666554 333
Q ss_pred ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 183 DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 183 ~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+ +|++++++||||+.| ||+|++++++++.+++.
T Consensus 184 ~--iD~~~~s~~K~l~~P-----~G~g~l~v~~~~~~~~~ 216 (378)
T PRK03080 184 K--LDVYTFSWQKVLGGE-----GGHGMAILSPRAVERLE 216 (378)
T ss_pred H--CcEEEEehhhhCCCC-----CceEEEEECHHHHHhhh
Confidence 3 799999999999854 68999999987766553
No 212
>PLN02724 Molybdenum cofactor sulfurase
Probab=99.62 E-value=5.5e-15 Score=152.30 Aligned_cols=182 Identities=15% Similarity=0.121 Sum_probs=128.3
Q ss_pred ccccHHHHHHHHHHHHHHHhCCCee--eEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH---HHh
Q psy7357 28 QARGYEQLIGELETDLCEITGYDKI--SFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS---AQM 101 (302)
Q Consensus 28 ~sqG~l~~~~e~~~~l~~l~g~~~~--~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~---~~~ 101 (302)
.++-..+.+++.++.+++++|++.. .+..++|+ .|+ .+.+..+ ..+++|+|+++...|.+.... ++.
T Consensus 72 ~s~~~~~~~e~aR~~ia~~lga~~~~~~VvFtsnaT~al---nlva~~l----~~~~gd~Iv~t~~eH~svl~~~~~a~~ 144 (805)
T PLN02724 72 SSMRSSDTIESARQQVLEYFNAPPSDYACVFTSGATAAL---KLVGETF----PWSSESHFCYTLENHNSVLGIREYALE 144 (805)
T ss_pred hhhhHHHHHHHHHHHHHHHhCCCccceEEEEeCChHHHH---HHHHHHC----CCCCCCeEEEeeccccchHHHHHHHHH
Confidence 3455678899999999999999653 34555554 433 2223322 015789999998888776543 456
Q ss_pred CCCEEEEeecC--------CCCCCCH--HHHHHHHhc-------cCCCeEEEEEecC-CCceeccccHHHHHHHHHHh--
Q psy7357 102 AGMSVEPVSVR--------KDGTIDF--SDLETKVKK-------NKETLSCLMITYP-STFGVFEENITDVCELIHEH-- 161 (302)
Q Consensus 102 ~g~~v~~i~~~--------~~g~iD~--~~l~~~i~~-------~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~-- 161 (302)
.|+++..++++ ..+.+|+ ++|++.+++ ..++|++|.+++- |.+|.+. |+++|.++++..
T Consensus 145 ~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~-pi~~i~~~~~~~~~ 223 (805)
T PLN02724 145 KGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKF-PLDLVKLIKDNQHS 223 (805)
T ss_pred cCCeEEeccchhccccccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcC-CHHHHHHHHHhccc
Confidence 79999999986 3445554 667776420 1245678888774 7899999 799876655532
Q ss_pred ------CCEEEEecCCcccccccCCCCccCCcEEEeCCCcccCCCCCCCCC-cceeEEEeCCCCCCCCCC
Q psy7357 162 ------GGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGP-GMGPIGVKSHLAPFLPVH 224 (302)
Q Consensus 162 ------g~llivD~a~~~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp-~~G~l~~~~~l~~~lpg~ 224 (302)
++++++|++|..+...+ +..++++|++++++||+|+ || |+|++++++++.+.++..
T Consensus 224 ~~~~~g~~~v~vDaaQ~~g~~pi-Dv~~~~~Dfl~~S~HK~~G------gP~G~G~L~vr~~~~~~l~p~ 286 (805)
T PLN02724 224 NFSKSGRWMVLLDAAKGCGTSPP-DLSRYPADFVVVSFYKIFG------YPTGLGALLVRRDAAKLLKKK 286 (805)
T ss_pred ccccCcceEEEeehhhhcCCCCC-ChhhcCCCEEEEecceecc------CCCCceEEEEehhhhhhhcCC
Confidence 35789999997777654 5567899999999999886 45 799999998876665433
No 213
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=99.62 E-value=1.2e-15 Score=139.22 Aligned_cols=174 Identities=21% Similarity=0.293 Sum_probs=129.4
Q ss_pred ccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCccc---HHHHHhCCCEE
Q psy7357 30 RGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTN---PASAQMAGMSV 106 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~---~~~~~~~g~~v 106 (302)
-|..+...++++.++++||.+.+. ...+|+.|+..+++++. ++++.|++.++.|... .......|+++
T Consensus 25 Yg~D~~~~~l~~~i~~l~g~e~a~-f~~sGT~An~~al~~~~--------~~~~~vi~~~~aHi~~~E~ga~~~~~G~~~ 95 (290)
T PF01212_consen 25 YGEDPTTARLEERIAELFGKEAAL-FVPSGTMANQLALRAHL--------RPGESVICADTAHIHFDETGAIEELSGAKL 95 (290)
T ss_dssp TTSSHHHHHHHHHHHHHHTSSEEE-EESSHHHHHHHHHHHHH--------HTTEEEEEETTEHHHHSSTTHHHHHTTCEE
T ss_pred cCCChhHHHHHHHHHHHcCCCEEE-EeCCCChHHHHHHHHHH--------hcCCceeccccceeeeeccchhhHhcCcEE
Confidence 355688999999999999999875 55679888756555544 4678889988876422 33456799999
Q ss_pred EEeecCCCCCCCHHHHHHHHhc---cCCCeEEEEEecCCCc--eec--cccHHHHHHHHHHhCCEEEEecCCccc-cccc
Q psy7357 107 EPVSVRKDGTIDFSDLETKVKK---NKETLSCLMITYPSTF--GVF--EENITDVCELIHEHGGQVYLDGANMNA-QVGL 178 (302)
Q Consensus 107 ~~i~~~~~g~iD~~~l~~~i~~---~~~~t~~V~i~~Pn~~--G~~--~~di~~I~~ia~~~g~llivD~a~~~~-~~~~ 178 (302)
+.++.+++|.+|+++|++.+++ |.+++++|.+++|+.. |.+ .+++++|+++||++|+.+++|+|-.+- ...+
T Consensus 96 ~~l~~~~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~ 175 (290)
T PF01212_consen 96 IPLPSDDDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAAL 175 (290)
T ss_dssp EEEBECTGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHH
T ss_pred EECCCcccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhcc
Confidence 9999855599999999999986 4468999999999876 764 226999999999999999999985311 1100
Q ss_pred -CCCC--ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCC
Q psy7357 179 -CRPG--DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLA 218 (302)
Q Consensus 179 -~~p~--~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~ 218 (302)
.++. ..++|++.+++.|.++ .|..++++.+++++
T Consensus 176 ~~~~~e~~~~~D~v~~~~tK~~g------~~~Gavl~~~~~~i 212 (290)
T PF01212_consen 176 GVSLAEIAAGADSVSFGGTKNGG------APGGAVLAGNKEFI 212 (290)
T ss_dssp HHHHHHHHTTSSEEEEETTSTT-------SSSEEEEEESHHHH
T ss_pred cccHHHHhhhCCEEEEEEEcccc------cccceEEEechHHH
Confidence 1121 2468999999999765 56779999998743
No 214
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=99.62 E-value=1.2e-15 Score=143.12 Aligned_cols=168 Identities=17% Similarity=0.160 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHhCCCeeeEeeCchHH-HHHHHHHHHHHHHHhhcCCCC-CEEEEcCCCCcccHHHHHhCCCEEEEeecCC
Q psy7357 36 IGELETDLCEITGYDKISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHR-NVCLIPVSAHGTNPASAQMAGMSVEPVSVRK 113 (302)
Q Consensus 36 ~~e~~~~l~~l~g~~~~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~-d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~ 113 (302)
..++++.+++.+|++..++..++|++ +. ...++.+. +++ |+|++++|.|+.+...++..|++++.+|+++
T Consensus 62 ~~~Lr~aia~~~~~~~~~I~it~Gs~~~i---~~~~~~~~-----~~g~d~vlv~~P~y~~y~~~~~~~g~~v~~v~~~~ 133 (354)
T PRK04635 62 PPELINAYSAYAGVAPEQILTSRGADEAI---ELLIRAFC-----EPGQDSIACFGPTYGMYAISAETFNVGVKALPLTA 133 (354)
T ss_pred HHHHHHHHHHHhCcCHHHEEEeCCHHHHH---HHHHHHhc-----CCCCCeEEEcCCChHHHHHHHHHcCCEEEEEecCC
Confidence 36888899999999988888888884 33 22233221 456 8999999998877777889999999999987
Q ss_pred CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHh-CCEEEEecCCcccccccCCC---CccCCc-
Q psy7357 114 DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEH-GGQVYLDGANMNAQVGLCRP---GDYGSD- 187 (302)
Q Consensus 114 ~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~-g~llivD~a~~~~~~~~~~p---~~~gaD- 187 (302)
++.+|++.+++ + +++++|+++|| |+||.+. +.+++.++++.. ++++++|+++.- +...... .....+
T Consensus 134 ~~~~~~~~l~~-~----~~~~li~i~nP~NPTG~~~-~~~~l~~l~~~~~~~~vivDeay~~-~~~~~s~~~~~~~~~~~ 206 (354)
T PRK04635 134 DYQLPLDYIEQ-L----DGAKLVFICNPNNPTGTVI-DRADIEQLIEMTPDAIVVVDEAYIE-FCPEYSVADLLASYPNL 206 (354)
T ss_pred CCCCCHHHHHh-c----cCCCEEEEeCCCCCCCccC-CHHHHHHHHHhCCCcEEEEeCchHh-hccCcchHHHHhhCCCE
Confidence 77899998873 3 47899999999 5999998 688888888763 689999998621 1100010 011123
Q ss_pred EEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 188 VSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 188 iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+++.+.+|+|+. .|.|+|++++++++++.+.
T Consensus 207 iv~~S~SK~~~l----~GlRlG~~i~~~~~~~~l~ 237 (354)
T PRK04635 207 VVLRTLSKAFAL----AGARCGFTLANEELIEILM 237 (354)
T ss_pred EEEechHHHhhh----hHHHHhhhhCCHHHHHHHH
Confidence 455556776654 4899999999987776654
No 215
>PRK09265 aminotransferase AlaT; Validated
Probab=99.62 E-value=1.7e-14 Score=137.78 Aligned_cols=172 Identities=13% Similarity=0.130 Sum_probs=118.1
Q ss_pred cccHHHHHHHHHHHHHHHh--CCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEE
Q psy7357 29 ARGYEQLIGELETDLCEIT--GYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSV 106 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~--g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v 106 (302)
.+|..++++.+.+.+.+.. +++..++..++|++.. ...+++.++ ++||+|+++++.|+.+...++..|.++
T Consensus 71 ~~G~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~~--l~~~~~~~~-----~~gd~Vlv~~p~y~~~~~~~~~~g~~~ 143 (404)
T PRK09265 71 SKGLFSARKAIMQYYQQKGIPDVDVDDIYIGNGVSEL--IVMAMQALL-----NNGDEVLVPAPDYPLWTAAVSLSGGKP 143 (404)
T ss_pred CCCcHHHHHHHHHHHhccCCCCCCcccEEEeCChHHH--HHHHHHHhC-----CCCCEEEEeCCCCcChHHHHHHcCCEE
Confidence 5676665555555543221 5666677777777431 122333221 678999999999998888888889999
Q ss_pred EEeecCC--CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCCcc-cccc--c
Q psy7357 107 EPVSVRK--DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGANMN-AQVG--L 178 (302)
Q Consensus 107 ~~i~~~~--~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~~~-~~~~--~ 178 (302)
+.++.+. ++.+|++++++.++ +++++|++++| |++|.+.+ ++++|.++|+++|+++++|.++.- .... .
T Consensus 144 v~~~~~~~~~~~~d~~~l~~~~~---~~~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~ 220 (404)
T PRK09265 144 VHYLCDEEAGWFPDLDDIRSKIT---PRTKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVH 220 (404)
T ss_pred EEEecccccCCCCCHHHHHHhcc---ccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCc
Confidence 9998764 35689999999987 78899999999 59998751 389999999999999999987631 1111 0
Q ss_pred CCCCcc--CCcEE-EeCCCcccCCCCCCCCCcceeEEEe
Q psy7357 179 CRPGDY--GSDVS-HLNLHKTFCIPHGGGGPGMGPIGVK 214 (302)
Q Consensus 179 ~~p~~~--gaDiv-~~~~hK~l~~p~~~gGp~~G~l~~~ 214 (302)
.+.... ...++ +.+..|+|+.| |.|+|++++.
T Consensus 221 ~~~~~~~~~~~vi~~~S~SK~~~~p----GlRiG~~v~~ 255 (404)
T PRK09265 221 ISIASLAPDLLCVTFNGLSKAYRVA----GFRVGWMVLS 255 (404)
T ss_pred CCHHHcCCCceEEEEecchhhccCc----ccceEEEEEe
Confidence 111111 12344 45556777654 8999999974
No 216
>PRK06836 aspartate aminotransferase; Provisional
Probab=99.62 E-value=1.9e-14 Score=137.07 Aligned_cols=175 Identities=18% Similarity=0.216 Sum_probs=125.4
Q ss_pred cccHHHHHHHHHHHHHHHhCC--CeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITGY--DKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~--~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
.+|..+++..+.+.+.+..+. +..++..++|+ ++...++.++. .++|.|+++++.|+.+...++..|++
T Consensus 72 ~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~--------~~gd~Vli~~p~~~~~~~~~~~~g~~ 143 (394)
T PRK06836 72 NAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGALNVALKAIL--------NPGDEVIVFAPYFVEYRFYVDNHGGK 143 (394)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHHHHHHHHHhc--------CCCCEEEEcCCCCccHHHHHHHcCCE
Confidence 467767777776666655443 44556666665 44433333332 57899999999998888888889999
Q ss_pred EEEeecCCC-CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHH------hCCEEEEecCCccc-
Q psy7357 106 VEPVSVRKD-GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHE------HGGQVYLDGANMNA- 174 (302)
Q Consensus 106 v~~i~~~~~-g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~------~g~llivD~a~~~~- 174 (302)
++.+|.+++ +.+|+++++++++ +++++|++++| |++|... .++++|.++|++ +|+++++|.++...
T Consensus 144 v~~v~~~~~~~~~d~~~l~~~~~---~~~~~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~ 220 (394)
T PRK06836 144 LVVVPTDTDTFQPDLDALEAAIT---PKTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIV 220 (394)
T ss_pred EEEEecCCccCcCCHHHHHhhcC---cCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccc
Confidence 999999775 6899999999997 78999999998 5899874 157888888998 89999999986311
Q ss_pred ccc--cCC-CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCC
Q psy7357 175 QVG--LCR-PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLA 218 (302)
Q Consensus 175 ~~~--~~~-p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~ 218 (302)
..+ ... ...+.-.+++.|.+|+|+.| |.|+|++++++++.
T Consensus 221 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~p----GlRiG~~~~~~~~~ 263 (394)
T PRK06836 221 YDGAEVPYIFKYYDNSIVVYSFSKSLSLP----GERIGYIAVNPEME 263 (394)
T ss_pred cCCCCCCChHHccCcEEEEecchhhccCc----ceeeEEEecCHHHh
Confidence 111 101 11222357777778888755 78999999987653
No 217
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=99.62 E-value=5.4e-14 Score=134.52 Aligned_cols=169 Identities=21% Similarity=0.229 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeec
Q psy7357 32 YEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSV 111 (302)
Q Consensus 32 ~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~ 111 (302)
..+...++++.+++++|.+. .+..++|++++..++.++.. ..+++.|+++...|++....++..|.++..++.
T Consensus 89 ~~~~~~~Le~~la~~~g~~~-~i~~~sG~~a~~~~i~~l~~------~~~g~~vi~~~~~h~s~~~~~~~~g~~~~~~~~ 161 (410)
T PRK13392 89 TSHPHVLLERELADLHGKES-ALLFTSGYVSNDAALSTLGK------LLPGCVILSDALNHASMIEGIRRSGAEKQVFRH 161 (410)
T ss_pred ChHHHHHHHHHHHHHhCCCC-EEEECcHHHHHHHHHHHHhc------CCCCCEEEEehhhhHHHHHHHHHcCCeEEEEeC
Confidence 44467789999999999764 56677898776555544321 035788888777887776667788988877763
Q ss_pred CCCCCCCHHHHHHHHhccC-CCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccC------CCC-
Q psy7357 112 RKDGTIDFSDLETKVKKNK-ETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLC------RPG- 182 (302)
Q Consensus 112 ~~~g~iD~~~l~~~i~~~~-~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~------~p~- 182 (302)
.|.+++++.+++.. +++++|++++| |++|.+. |+++|.++|+++|+++++|+++..+..+-. .++
T Consensus 162 -----~d~~~l~~~l~~~~~~~t~~v~i~~~~n~tG~~~-~l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~ 235 (410)
T PRK13392 162 -----NDLADLEEQLASVDPDRPKLIAFESVYSMDGDIA-PIEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGL 235 (410)
T ss_pred -----CCHHHHHHHHHhccCCCCEEEEEeCCCCCCcccc-cHHHHHHHHHHcCCEEEEECCccccCcCCCCCchhhhccC
Confidence 26667777775432 57899999999 5899998 799999999999999999999864332110 011
Q ss_pred ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCC
Q psy7357 183 DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPF 220 (302)
Q Consensus 183 ~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~ 220 (302)
....|+++.+++|+|+.+ | |++++++++++.
T Consensus 236 ~~~~div~~tlsK~~g~~------G-G~~~~~~~~~~~ 266 (410)
T PRK13392 236 MDRIDMIQGTLAKAFGCL------G-GYIAASADLIDF 266 (410)
T ss_pred CCCCcEEEEEChHhhhcc------c-chhhcCHHHHHH
Confidence 124689988889988743 3 788877766653
No 218
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=99.62 E-value=1.1e-14 Score=138.74 Aligned_cols=179 Identities=15% Similarity=0.170 Sum_probs=123.5
Q ss_pred CCCCCcccccHHHHHHHHHHHHHHHhCC--CeeeE--eeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH
Q psy7357 22 PFIPQDQARGYEQLIGELETDLCEITGY--DKISF--QPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP 96 (302)
Q Consensus 22 py~p~e~sqG~l~~~~e~~~~l~~l~g~--~~~~~--~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~ 96 (302)
.|+| ++|..++++.+.+++.+..+. +..++ ..++|+ +|...++.++... ++||+|++++|.|+.+.
T Consensus 64 ~Y~~---~~G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~------~pGd~Vlv~~P~y~~~~ 134 (396)
T PRK09257 64 NYLP---IEGLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGALRVGADFLKRA------FPDAKVWVSDPTWPNHR 134 (396)
T ss_pred CcCC---CCCCHHHHHHHHHHhcCCCCcccccCeEEEEecCCccHHHHHHHHHHHHh------CCCCeEEECCCCcccHH
Confidence 4555 689988888888887665432 33343 566676 4443333222211 58999999999999998
Q ss_pred HHHHhCCCEEEEeec-CC-CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceec--cccHHHHHHHHHHhCCEEEEecCC
Q psy7357 97 ASAQMAGMSVEPVSV-RK-DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVF--EENITDVCELIHEHGGQVYLDGAN 171 (302)
Q Consensus 97 ~~~~~~g~~v~~i~~-~~-~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~--~~di~~I~~ia~~~g~llivD~a~ 171 (302)
..++..|++++.+|. ++ ++.+|++++++.++++++++.++++.+| ||||.. .+.+++|.++|+++|+++|.|.++
T Consensus 135 ~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y 214 (396)
T PRK09257 135 AIFEAAGLEVKTYPYYDAATKGLDFDAMLADLSQAPAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAY 214 (396)
T ss_pred HHHHHcCCcEEEEeccccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccc
Confidence 899999999999997 33 4679999999998755455667777888 699976 226899999999999999999876
Q ss_pred cc-ccc-c--cCC---CCccCCc-EEEeCCCcccCCCCCCCCCcceeEEE
Q psy7357 172 MN-AQV-G--LCR---PGDYGSD-VSHLNLHKTFCIPHGGGGPGMGPIGV 213 (302)
Q Consensus 172 ~~-~~~-~--~~~---p~~~gaD-iv~~~~hK~l~~p~~~gGp~~G~l~~ 213 (302)
.- ... . ... ....+-+ |++.|.+|+|+.| |.|+||+++
T Consensus 215 ~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~----GlRiG~~~~ 260 (396)
T PRK09257 215 QGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFGLY----GERVGALSV 260 (396)
T ss_pred cccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCccc----cccceeEEE
Confidence 21 110 0 000 0111223 5566667777644 899999984
No 219
>PRK05839 hypothetical protein; Provisional
Probab=99.62 E-value=6.4e-15 Score=139.36 Aligned_cols=184 Identities=11% Similarity=0.025 Sum_probs=125.4
Q ss_pred CCCCCCCcccccHHHHHHHHHHHHHHHhC--CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH
Q psy7357 20 MHPFIPQDQARGYEQLIGELETDLCEITG--YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA 97 (302)
Q Consensus 20 ~~py~p~e~sqG~l~~~~e~~~~l~~l~g--~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~ 97 (302)
.+.|.+ .+|..++++.+.+.+++.+| ++..++..++|++..+. ..++.++ . .+++|.|+++.|.|+.+..
T Consensus 53 ~~~Y~~---~~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~--~~~~~~~--~-~~~gd~vlv~~P~y~~~~~ 124 (374)
T PRK05839 53 LNKYPK---SAGEESLREAQRGFFKRRFKIELKENELIPTFGTREVLF--NFPQFVL--F-DKQNPTIAYPNPFYQIYEG 124 (374)
T ss_pred cCCCCC---CCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHH--HHHHHHh--c-CCCCCEEEECCCCchhhHH
Confidence 344555 67888999999999998888 45678888888853211 1112111 0 1367899999999988888
Q ss_pred HHHhCCCEEEEeecCCC--CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCc
Q psy7357 98 SAQMAGMSVEPVSVRKD--GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANM 172 (302)
Q Consensus 98 ~~~~~g~~v~~i~~~~~--g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~ 172 (302)
.++..|++++.+|.+++ ..+|+++. .+ +++++|+++|| ||||.+- +++++|.++|+++|+++++|.++.
T Consensus 125 ~~~~~g~~v~~v~~~~~~~~~~d~~~~--~~----~~~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~ 198 (374)
T PRK05839 125 AAIASRAKVLLMPLTKENDFTPSLNEK--EL----QEVDLVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYS 198 (374)
T ss_pred HHHhcCCEEEEeecccccCCcCCcchh--hh----ccccEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchh
Confidence 88899999999999754 34555433 22 36889999999 5999872 258888899999999999999863
Q ss_pred ccc-c-ccCCCC-------c-cCCc-EEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 173 NAQ-V-GLCRPG-------D-YGSD-VSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 173 ~~~-~-~~~~p~-------~-~gaD-iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
--. . ...+.. . ..-. |++.+..|+|+. .|.|+|++.+++++++.+
T Consensus 199 ~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~----~GlRiG~ii~~~~~~~~~ 254 (374)
T PRK05839 199 EIYENTPPPSLLEASILVGNESFKNVLVINSISKRSSA----PGLRSGFIAGDASILKKY 254 (374)
T ss_pred hcccCCCCCCHhhhhcccCccccCcEEEEeccccccCC----ccceeEEEecCHHHHHHH
Confidence 111 0 010100 0 0013 555556666654 489999999987766654
No 220
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=99.62 E-value=1.9e-14 Score=137.18 Aligned_cols=171 Identities=15% Similarity=0.173 Sum_probs=118.6
Q ss_pred cccHHHHHHHHHHHHHHHhC--CCeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITG--YDKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g--~~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
.+|..++++.+.+.+.+. + ++..++..++|+ ++...++.++. +++|+|+++++.|+.+...++..|++
T Consensus 72 ~~g~~~lr~aia~~~~~~-~~~~~~~~i~~t~G~~~al~~~~~~l~--------~~gd~v~i~~P~y~~~~~~~~~~g~~ 142 (401)
T TIGR01264 72 TVGALSAREAIASYYHNP-DGPIEADDVVLCSGCSHAIEMCIAALA--------NAGQNILVPRPGFPLYETLAESMGIE 142 (401)
T ss_pred CCCCHHHHHHHHHHHhhc-CCCCCHHHEEECcChHHHHHHHHHHhC--------CCCCEEEEeCCCChhHHHHHHHcCCE
Confidence 467766666666655542 3 344466666676 44423333322 57899999999988888888899999
Q ss_pred EEEeecCC--CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcc-cccc--
Q psy7357 106 VEPVSVRK--DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMN-AQVG-- 177 (302)
Q Consensus 106 v~~i~~~~--~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~-~~~~-- 177 (302)
++.++++. ++.+|++++++.++ +++++|++++| |++|... +++++|.++|+++|+++++|.++.- ....
T Consensus 143 v~~~~~~~~~~~~~d~~~l~~~~~---~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~ 219 (401)
T TIGR01264 143 VKLYNLLPDKSWEIDLKQLESLID---EKTAALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGAT 219 (401)
T ss_pred EEEeecCCccCCCCCHHHHHHHhc---cCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcc
Confidence 99998864 45799999999887 67889999999 5899873 2589999999999999999998631 1111
Q ss_pred cCCCCccC--Cc-EEEeCCCcccCCCCCCCCCcceeEEEeC
Q psy7357 178 LCRPGDYG--SD-VSHLNLHKTFCIPHGGGGPGMGPIGVKS 215 (302)
Q Consensus 178 ~~~p~~~g--aD-iv~~~~hK~l~~p~~~gGp~~G~l~~~~ 215 (302)
..+...+. .+ |++.+.+|+|+.| |.|+|++++++
T Consensus 220 ~~~~~~~~~~~~vi~~~SfSK~~~~~----GlRiG~iv~~~ 256 (401)
T TIGR01264 220 FEPLASLSSTVPILSCGGLAKRWLVP----GWRLGWIIIHD 256 (401)
T ss_pred cccHHHcCCCCcEEEEccCcccCCCc----cceEEEEEecC
Confidence 11101111 12 4556566666544 89999999874
No 221
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=99.61 E-value=3.7e-14 Score=132.03 Aligned_cols=167 Identities=15% Similarity=0.148 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCC
Q psy7357 36 IGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDG 115 (302)
Q Consensus 36 ~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g 115 (302)
..++++.+++.+|.+..++..++|++.. ..++++ +. ++++ |++++|.|+.+...++..|.+++.+|++. .
T Consensus 42 ~~~lr~~ia~~~~~~~~~I~it~Gs~~~--l~~~~~-~~-----~~~~-vv~~~P~y~~y~~~~~~~G~~v~~vp~~~-~ 111 (332)
T PRK06425 42 YTDIEDQIKIYTQGLKIKVLIGPGLTHF--IYRLLS-YI-----NVGN-IIIVEPNFNEYKGYAFTHGIRISALPFNL-I 111 (332)
T ss_pred HHHHHHHHHHHhCCCcceEEECCCHHHH--HHHHHH-Hh-----CCCc-EEEeCCChHHHHHHHHHcCCeEEEEeCCc-c
Confidence 6789999999999998888888888522 222222 21 3554 66668988888889999999999999865 3
Q ss_pred CCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcc-cccccCC----CCccCCc
Q psy7357 116 TIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMN-AQVGLCR----PGDYGSD 187 (302)
Q Consensus 116 ~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~-~~~~~~~----p~~~gaD 187 (302)
..|.+.+++ .++++|+++|| ||||.+- +++++|.++|+++|+++|+|.++.- ......+ .... -.
T Consensus 112 ~~~~~~l~~------~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~~-~~ 184 (332)
T PRK06425 112 NNNPEILNN------YNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLNRSY-GN 184 (332)
T ss_pred cCcHHHHhh------cCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhccccccchhHHHHhccC-CC
Confidence 346554432 46788999999 5999863 1578888889999999999998631 1111001 0111 23
Q ss_pred EEE-eCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 188 VSH-LNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 188 iv~-~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
+++ .+..|+|+ +.|.|+||+++++++++.+..
T Consensus 185 vi~~~SfSK~~~----l~GlRiGy~v~~~~li~~l~~ 217 (332)
T PRK06425 185 VIIGRSLTKILG----IPSLRIGYIATDDYNMKISRK 217 (332)
T ss_pred EEEEeecHHhcC----CchhhheeeecCHHHHHHHHH
Confidence 444 44555555 449999999999887766543
No 222
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=99.61 E-value=2.9e-14 Score=137.96 Aligned_cols=188 Identities=13% Similarity=0.184 Sum_probs=131.6
Q ss_pred CccCCCCCCCcccccHHHHHHHHHHHHHHHhC----CCeeeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCC
Q psy7357 17 LTNMHPFIPQDQARGYEQLIGELETDLCEITG----YDKISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSA 91 (302)
Q Consensus 17 ft~~~py~p~e~sqG~l~~~~e~~~~l~~l~g----~~~~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~ 91 (302)
|...+-|++ ++|..+++.++.+.+.+.+| .+..++..++|++ +......++. ++||.|+++.|.
T Consensus 85 ~~~~~~y~~---~~G~~~LR~aiA~~l~~~~~~~~~v~p~~Ivit~G~t~al~~l~~~l~--------~pGD~Vlv~~P~ 153 (447)
T PLN02607 85 FRENALFQD---YHGLKSFRQAMASFMEQIRGGKARFDPDRIVLTAGATAANELLTFILA--------DPGDALLVPTPY 153 (447)
T ss_pred cchhhccCC---CcchHHHHHHHHHHHHHhcCCCCCcCHHHeEEcCChHHHHHHHHHHhC--------CCCCEEEEcCCC
Confidence 434445665 68999999999999988776 4455677777874 3333333322 689999999999
Q ss_pred CcccHHHHH-hCCCEEEEeecCCC--CCCCHHHHHHHHhcc---CCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhC
Q psy7357 92 HGTNPASAQ-MAGMSVEPVSVRKD--GTIDFSDLETKVKKN---KETLSCLMITYP-STFGVFE--ENITDVCELIHEHG 162 (302)
Q Consensus 92 hg~~~~~~~-~~g~~v~~i~~~~~--g~iD~~~l~~~i~~~---~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g 162 (302)
|+.+..... ..|++++.++++++ ..+|++++++++++. ..++++|+++|| ||+|.+- +.+++|.++|+++|
T Consensus 154 Y~~f~~~~~~~~g~~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~ 233 (447)
T PLN02607 154 YPGFDRDLRWRTGVKIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKN 233 (447)
T ss_pred CcchHHHHHhcCCcEEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCC
Confidence 988766554 57999999998743 468999999998631 247899999999 6999863 25889999999999
Q ss_pred CEEEEecCCcccccc---cCCCC----cc-----CCc-EEEeCCCcccCCCCCCCCCcceeEEE-eCCCCC
Q psy7357 163 GQVYLDGANMNAQVG---LCRPG----DY-----GSD-VSHLNLHKTFCIPHGGGGPGMGPIGV-KSHLAP 219 (302)
Q Consensus 163 ~llivD~a~~~~~~~---~~~p~----~~-----gaD-iv~~~~hK~l~~p~~~gGp~~G~l~~-~~~l~~ 219 (302)
+.+|+|.++..+... ..+.. .. .-. +++.+..|.|+.| |.|+|++++ ++++.+
T Consensus 234 i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~----GlRvG~ivs~n~~l~~ 300 (447)
T PLN02607 234 IHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGLP----GFRVGTIYSYNDKVVT 300 (447)
T ss_pred CEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchhcCCCC----cceEEEEEEcCHHHHH
Confidence 999999987432111 11100 01 112 4555667777655 899999998 444433
No 223
>PRK06855 aminotransferase; Validated
Probab=99.61 E-value=2.8e-14 Score=137.64 Aligned_cols=177 Identities=19% Similarity=0.181 Sum_probs=125.4
Q ss_pred CCCCCCcccccHHHHHHHHHHHHHHHhCC--CeeeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH
Q psy7357 21 HPFIPQDQARGYEQLIGELETDLCEITGY--DKISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA 97 (302)
Q Consensus 21 ~py~p~e~sqG~l~~~~e~~~~l~~l~g~--~~~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~ 97 (302)
..|.| .+|..++++.+.+++.+..|. +..++..++|++ +. ..+.++. ++||.|++++|.|+.+..
T Consensus 67 ~~Y~~---~~G~~~LReaia~~~~~~~g~~~~~~~I~it~G~~~al-~~~~~l~--------~~Gd~Vlv~~P~Y~~~~~ 134 (433)
T PRK06855 67 YGYCP---TKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGDAI-AKIYGLL--------RREARVIGPSPAYSTHSS 134 (433)
T ss_pred CCCCC---CCCCHHHHHHHHHHHHhccCCCCCHhHEEEcCcHHHHH-HHHHHhc--------CCCCeEEEeCCCCchHHH
Confidence 34555 689989999999988887675 445777788874 33 2222221 689999999999887654
Q ss_pred H-HHhCCCEEEEeecCC-C-CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCC
Q psy7357 98 S-AQMAGMSVEPVSVRK-D-GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGAN 171 (302)
Q Consensus 98 ~-~~~~g~~v~~i~~~~-~-g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~ 171 (302)
. ....|++++.+|+++ + ..+|+++|+++++++ ++++++++++| ||||.+- +.+++|.++|+++|+++|.|.++
T Consensus 135 ~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~-~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y 213 (433)
T PRK06855 135 AEAAHAGYPPVTYRLDPENNWYPDLDDLENKVKYN-PSIAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIY 213 (433)
T ss_pred HHHHhcCCeEEEEecccccCCCCCHHHHHHHHhcC-CCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccc
Confidence 3 335689999999874 3 368999999999632 46788999999 6999873 25888999999999999999986
Q ss_pred cc-cccc--cCCCCcc---CCcEEEeCCCcccCCCCCCCCCcceeEEEe
Q psy7357 172 MN-AQVG--LCRPGDY---GSDVSHLNLHKTFCIPHGGGGPGMGPIGVK 214 (302)
Q Consensus 172 ~~-~~~~--~~~p~~~---gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~ 214 (302)
.- .... ..+.... +--|++.|..|+|+.| |.|+||++++
T Consensus 214 ~~l~~~~~~~~sl~~~~~~~~~I~~~S~SK~~~~p----GlRiG~ii~p 258 (433)
T PRK06855 214 NNIVYNGKKTVPLSEVIGDVPGIALKGISKELPWP----GSRCGWIEVY 258 (433)
T ss_pred cccccCCCCCCCHHHHcCcCCeEEEecCccccCCC----cceEEEEEEe
Confidence 31 1111 1111111 1237778788888766 8999999984
No 224
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=99.60 E-value=8.9e-14 Score=132.65 Aligned_cols=171 Identities=21% Similarity=0.224 Sum_probs=122.2
Q ss_pred cHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEee
Q psy7357 31 GYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVS 110 (302)
Q Consensus 31 G~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~ 110 (302)
|..+...++++.+++++|.+. .+..++|++|+.+++.++..+ .+++.|+.....|++....+...|.++..++
T Consensus 87 g~~~~~~~Le~~la~~~g~~~-~l~~~sG~~an~~ai~~l~~~------~~~~~v~~~~~~h~s~~~~~~~~g~~~~~~~ 159 (402)
T TIGR01821 87 GTNIPHVELEAELADLHGKES-ALVFTSGYVANDATLATLAKI------IPGCVIFSDELNHASMIEGIRHSGAEKFIFR 159 (402)
T ss_pred CCcHHHHHHHHHHHHHhCCCe-EEEECchHHHHHHHHHHhhCC------CCCCEEEEcchHhHHHHHHHHHcCCeEEEEC
Confidence 445678899999999999765 466788988776666554411 2566766666677666556667788876665
Q ss_pred cCCCCCCCHHHHHHHHhccCC-CeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccc-c-----CCCC
Q psy7357 111 VRKDGTIDFSDLETKVKKNKE-TLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVG-L-----CRPG 182 (302)
Q Consensus 111 ~~~~g~iD~~~l~~~i~~~~~-~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~-~-----~~p~ 182 (302)
. .|++++++.++...+ ++++|++++| |++|.+. |+++|.++|+++|+++++|++|..+..+ . ..++
T Consensus 160 ~-----~d~~~l~~~l~~~~~~~~~~v~~e~~~~~~G~~~-~l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~ 233 (402)
T TIGR01821 160 H-----NDVAHLEKLLQSVDPNRPKIIAFESVYSMDGDIA-PIEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDG 233 (402)
T ss_pred C-----CCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCcc-CHHHHHHHHHHcCCEEEEeCcccccccCCCCCccchhcc
Confidence 3 378888888874433 6889999998 5899998 7999999999999999999998644321 1 0111
Q ss_pred -ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 183 -DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 183 -~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
...+|+++.+.+|.|+. +| |++++++++++.+
T Consensus 234 ~~~~~div~~t~sKa~g~------~G-G~i~~~~~~~~~l 266 (402)
T TIGR01821 234 LMHRIDIIEGTLAKAFGV------VG-GYIAASRKLIDAI 266 (402)
T ss_pred CCCCCeEEEEechhhhcc------CC-ceeecCHHHHHHH
Confidence 12368888888888863 22 7888887766554
No 225
>PLN02397 aspartate transaminase
Probab=99.60 E-value=1.6e-14 Score=138.91 Aligned_cols=172 Identities=15% Similarity=0.138 Sum_probs=116.8
Q ss_pred cccHHHHHHHHHHHHHHHhCCC--eee-----EeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHh
Q psy7357 29 ARGYEQLIGELETDLCEITGYD--KIS-----FQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQM 101 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~--~~~-----~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~ 101 (302)
++|..++++.+.+++.+..+.+ ..+ +..++|+.+. +.++...+ .+||+|++++|.|+.+...++.
T Consensus 90 ~~G~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~Ga~~l---~~~~~~~~-----~pGd~Vlv~~P~y~~y~~~~~~ 161 (423)
T PLN02397 90 IEGLAEFNKLSAKLAYGADSPAIKENRVATVQCLSGTGSLRL---GAEFLARF-----YPGSTIYIPNPTWGNHHNIFRD 161 (423)
T ss_pred cCCCHHHHHHHHHHHcCCCCchhhcCeeEeeecccchHHHHH---HHHHHHHh-----CCCCEEEEeCCCchhHHHHHHH
Confidence 7899998888888775543321 111 2333344322 22222211 5899999999999999999999
Q ss_pred CCCEEEEeec-CC-CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCc-ccc
Q psy7357 102 AGMSVEPVSV-RK-DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANM-NAQ 175 (302)
Q Consensus 102 ~g~~v~~i~~-~~-~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~-~~~ 175 (302)
.|.+++.+|. ++ +..+|++.+++.+.++.++++++++.+| ||||.+- +++++|.++|+++|+++|.|.++. ...
T Consensus 162 ~g~~~~~v~l~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~ 241 (423)
T PLN02397 162 AGVPVRTYRYYDPKTRGLDFDGLLEDLKAAPDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFAS 241 (423)
T ss_pred cCCeEEEeecccCcCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCCccC
Confidence 9999999997 33 4579999999988754467888888888 6999872 268889999999999999999862 111
Q ss_pred cc----cCCCC---ccCCcE-EEeCCCcccCCCCCCCCCcceeEE
Q psy7357 176 VG----LCRPG---DYGSDV-SHLNLHKTFCIPHGGGGPGMGPIG 212 (302)
Q Consensus 176 ~~----~~~p~---~~gaDi-v~~~~hK~l~~p~~~gGp~~G~l~ 212 (302)
.. ..... ..+.++ ++.|..|+|+. .|+|+||++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~----~G~RvG~~v 282 (423)
T PLN02397 242 GDLDADAQSVRMFVEDGHEILVAQSYAKNMGL----YGERVGALS 282 (423)
T ss_pred CchhhhhHHHHHHHhcCCcEEEEEECcccCCC----ccccceEEE
Confidence 11 00000 112234 45555666654 499999985
No 226
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=99.60 E-value=1.7e-14 Score=131.68 Aligned_cols=156 Identities=19% Similarity=0.199 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEEEEee
Q psy7357 35 LIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSVEPVS 110 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~i~ 110 (302)
..+.++++++.|-|--.. +...||-.|...++..+. ..||.|+.+...||.... ..+..|++++++.
T Consensus 63 T~~vlE~RiAaLEGG~aa-~a~aSG~AA~~~ai~~la--------~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~v~fvd 133 (426)
T COG2873 63 TTDVLEERIAALEGGVAA-LAVASGQAAITYAILNLA--------GAGDNIVSSSKLYGGTYNLFSHTLKRLGIEVRFVD 133 (426)
T ss_pred hHHHHHHHHHHhhcchhh-hhhccchHHHHHHHHHhc--------cCCCeeEeeccccCchHHHHHHHHHhcCcEEEEeC
Confidence 456777888888764332 334556554433333332 689999998888875533 3578899999998
Q ss_pred cCCCCCCCHHHHHHHHhccCCCeEEEEEec-CCCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcEE
Q psy7357 111 VRKDGTIDFSDLETKVKKNKETLSCLMITY-PSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDVS 189 (302)
Q Consensus 111 ~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~-Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDiv 189 (302)
. .|++.++++|+ ++|++|+++. .||-+.+. |+++|+++||++|++++||. .++..-+.+|-++|+|||
T Consensus 134 ~-----~d~~~~~~aI~---~nTkavf~EtigNP~~~v~-Die~ia~iAh~~gvpliVDN--T~atpyl~rP~~hGADIV 202 (426)
T COG2873 134 P-----DDPENFEAAID---ENTKAVFAETIGNPGLDVL-DIEAIAEIAHRHGVPLIVDN--TFATPYLCRPIEHGADIV 202 (426)
T ss_pred C-----CCHHHHHHHhC---cccceEEEEeccCCCcccc-CHHHHHHHHHHcCCcEEEec--CCCcceecchhhcCCCEE
Confidence 6 37999999999 9999999987 47877777 89999999999999999995 455556689999999999
Q ss_pred EeCCCcccCCCCCCCCCcceeEEEe
Q psy7357 190 HLNLHKTFCIPHGGGGPGMGPIGVK 214 (302)
Q Consensus 190 ~~~~hK~l~~p~~~gGp~~G~l~~~ 214 (302)
+-|+.|+++.. |-.+|=+++.
T Consensus 203 vHS~TK~igGh----Gt~iGG~iVD 223 (426)
T COG2873 203 VHSATKYIGGH----GTAIGGVIVD 223 (426)
T ss_pred EEeecccccCC----ccccceEEEe
Confidence 99999999843 4444444443
No 227
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=99.60 E-value=9.1e-15 Score=138.07 Aligned_cols=171 Identities=16% Similarity=0.175 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCC
Q psy7357 36 IGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDG 115 (302)
Q Consensus 36 ~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g 115 (302)
..++++.+++.++++..++..++|++..+..+ ++.+. ++||.|+++++.|+.+...+...|.+++.+|.+.++
T Consensus 69 ~~~Lr~~ia~~~~~~~~~I~it~G~~~~l~~~--~~~~~-----~~gd~vlv~~p~y~~~~~~~~~~g~~~~~vp~~~~~ 141 (369)
T PRK08153 69 NHDLRHALAAHHGVAPENIMVGEGIDGLLGLI--VRLYV-----EPGDPVVTSLGAYPTFNYHVAGFGGRLVTVPYRDDR 141 (369)
T ss_pred cHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHH--HHHhc-----CCCCEEEECCCcchHHHHHHHHcCCeEEEeeCCCCC
Confidence 45788889999998877888888885332222 22221 689999999999887777777889999999986654
Q ss_pred CCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHH--hCCEEEEecCCcc-cccc-cCCCCccCCc-EE
Q psy7357 116 TIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHE--HGGQVYLDGANMN-AQVG-LCRPGDYGSD-VS 189 (302)
Q Consensus 116 ~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~--~g~llivD~a~~~-~~~~-~~~p~~~gaD-iv 189 (302)
+|++++++.+.+ +++++|++++| |++|.+- +.+++.++++. +++++|+|.++.. ...+ .........+ |+
T Consensus 142 -~~~~~l~~~~~~--~~~~~i~l~~P~NPtG~~~-~~~~l~~l~~~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~i~ 217 (369)
T PRK08153 142 -EDLDALLDAARR--ENAPLVYLANPDNPMGSWH-PAADIVAFIEALPETTLLVLDEAYCETAPAGAAPPIDTDDPNVIR 217 (369)
T ss_pred -CCHHHHHHHhcc--cCCcEEEEeCCCCCCCCCC-CHHHHHHHHHhCCCCcEEEEeCchhhhcCcccchhhhhcCCCEEE
Confidence 899999887752 57888999999 5899986 46666666654 3899999998631 1111 1111111224 44
Q ss_pred EeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 190 HLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 190 ~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
+.+.+|+|+ +.|.|+|++++++++++.+
T Consensus 218 ~~SfSK~~g----~~GlRiG~~v~~~~~~~~l 245 (369)
T PRK08153 218 MRTFSKAYG----LAGARVGYAIGAPGTIKAF 245 (369)
T ss_pred EecchHhcc----CcchheeeeecCHHHHHHH
Confidence 554555554 4589999999987766544
No 228
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=99.60 E-value=1.1e-14 Score=136.44 Aligned_cols=166 Identities=18% Similarity=0.120 Sum_probs=118.8
Q ss_pred ccHHHHHHHHHHHHHHHhCCCeeeEe-eCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc---CCCCcccHHHHHhCCCE
Q psy7357 30 RGYEQLIGELETDLCEITGYDKISFQ-PNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP---VSAHGTNPASAQMAGMS 105 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~~~~~-~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~---~~~hg~~~~~~~~~g~~ 105 (302)
.|..++..++++.+++++|.+..++. .++|.+++.+++.++. +++|+|+++ .+.|.++...++..|.+
T Consensus 50 ~g~~~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al~--------~~gd~Vli~~~d~p~~~s~~~~~~l~ga~ 121 (346)
T TIGR03576 50 VGPAIFEEKVQELGREHLGGPEEKILVFNRTSSAILATILALE--------PPGRKVVHYLPEKPAHPSIPRSCKLAGAE 121 (346)
T ss_pred cCCHHHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHhC--------CCCCEEEECCCCCCCchhHHHHHHHcCCE
Confidence 36778899999999999999554443 4455576756555554 689999875 35777776778888887
Q ss_pred EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceec---cccHHHHHHHHHHhCCEEEEecCCcccccc---cC
Q psy7357 106 VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVF---EENITDVCELIHEHGGQVYLDGANMNAQVG---LC 179 (302)
Q Consensus 106 v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~---~~di~~I~~ia~~~g~llivD~a~~~~~~~---~~ 179 (302)
++.. .|+++++. . +++++|+++..|.+|.+ . |+++|+++|+++|+++++|.||.....+ ..
T Consensus 122 ~~~~-------~~l~~l~~--~---~~~~lIiitg~s~~G~v~~~~-~L~~i~~la~~~~~~livDEAy~~~~~~~~~~~ 188 (346)
T TIGR03576 122 YFES-------DELSELKK--I---DGTSLVVITGSTMDLKVVSEE-DLKRVIKQAKSKEAIVLVDDASGARVRRLYGQP 188 (346)
T ss_pred Eecc-------CCHHHHhh--C---cCceEEEEECCCCCCcccCHH-HHHHHHHHHHHcCCEEEEECCccccccccCCCC
Confidence 6432 24555432 2 46788888766777876 5 7999999999999999999998543211 11
Q ss_pred CCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 180 RPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 180 ~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
....+++|+++.+++|++ +|+++|++++++++++.+.
T Consensus 189 ~~~~~~~divv~s~SKal------aG~r~G~v~~~~~li~~l~ 225 (346)
T TIGR03576 189 PALDLGADLVVTSTDKLM------DGPRGGLLAGRKELVDKIK 225 (346)
T ss_pred CHHHcCCcEEEeccchhc------cccceEEEEeCHHHHHHHH
Confidence 112346799999888844 4799999999988776653
No 229
>PRK13578 ornithine decarboxylase; Provisional
Probab=99.60 E-value=1.5e-14 Score=144.94 Aligned_cols=168 Identities=15% Similarity=0.114 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH-HHhCCCEEEEeecCC
Q psy7357 35 LIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS-AQMAGMSVEPVSVRK 113 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~-~~~~g~~v~~i~~~~ 113 (302)
.+.|.|+.++++||++.+.+.++++|.++.++++++. ++||+||+.+..|-+.... ..+.|+++++++...
T Consensus 175 ~i~eAq~~AA~~fgAd~tyFlvNGTS~gn~a~i~a~~--------~~Gd~VLvdRN~HKSv~hgaLiLsGa~PVYl~P~~ 246 (720)
T PRK13578 175 AAKDAQKHAAKVFNADKTYFVLNGTSASNKVVTNALL--------TPGDLVLFDRNNHKSNHHGALIQAGATPVYLETAR 246 (720)
T ss_pred HHHHHHHHHHHHhCCCceEEEeCChhHHHHHHHHHhc--------CCCCEEEeecccHHHHHHHHHHHcCCeEEEeeccc
Confidence 5899999999999999988888777788888888765 7899999999999887664 778999999997643
Q ss_pred --C---CCCCHHH-----HHHHHhccCCC-------eEEEEEecCCCceeccccHHHHHHH-HHHhCCEEEEecCCcccc
Q psy7357 114 --D---GTIDFSD-----LETKVKKNKET-------LSCLMITYPSTFGVFEENITDVCEL-IHEHGGQVYLDGANMNAQ 175 (302)
Q Consensus 114 --~---g~iD~~~-----l~~~i~~~~~~-------t~~V~i~~Pn~~G~~~~di~~I~~i-a~~~g~llivD~a~~~~~ 175 (302)
. |.++.+. |+++|+++.++ .+++++++|++.|++- |+++|.++ +|+++ ++++|+|+....
T Consensus 247 n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTYdG~~y-di~~I~~~~~h~~~-~llvDEAhgah~ 324 (720)
T PRK13578 247 NPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTYDGTIY-NARQVVDKIGHLCD-YILFDSAWVGYE 324 (720)
T ss_pred cccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCCcceee-cHHHHHHHhhccCC-cEEEeCcchhhh
Confidence 2 3456544 99999876322 6899999999999999 89999998 68888 888999873211
Q ss_pred --cc----cC-CCCccCCc----EEEeCCCcccCCCCCCCCCcceeEEEeCCC
Q psy7357 176 --VG----LC-RPGDYGSD----VSHLNLHKTFCIPHGGGGPGMGPIGVKSHL 217 (302)
Q Consensus 176 --~~----~~-~p~~~gaD----iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l 217 (302)
.. +. ...+.|+| +++-|+||+|+.- -+..+|-++...
T Consensus 325 ~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~al-----TQaS~LHvk~~~ 372 (720)
T PRK13578 325 QFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAGF-----SQTSQIHKKDNH 372 (720)
T ss_pred ccCcccccCChhhhhcCCCCCCeEEEEChhhcchhh-----hhHhhhhcCCcc
Confidence 11 11 12467899 9999999999731 145666665443
No 230
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=99.60 E-value=1.6e-14 Score=136.12 Aligned_cols=171 Identities=18% Similarity=0.188 Sum_probs=122.5
Q ss_pred cccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEE
Q psy7357 29 ARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEP 108 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~ 108 (302)
.+|......++++.+++++|.+. .+.+++|+.+.++++.++. +++|+|+++++.|+.+...++..|.+++.
T Consensus 79 ~~g~~~~~~~l~~~la~~~~~~~-~i~~~~g~~~~~~~l~~~~--------~~gd~V~~~~~~~~~~~~~~~~~g~~~~~ 149 (385)
T PRK05958 79 VTGNSPAHEALEEELAEWFGAER-ALLFSSGYAANLAVLTALA--------GKGDLIVSDKLNHASLIDGARLSRARVRR 149 (385)
T ss_pred ccCCcHHHHHHHHHHHHHhCCCc-EEEECcHHHHHHHHHHHhC--------CCCCEEEEeCccCHHHHHHHHhcCCceEE
Confidence 45667788999999999999653 4666778765544333321 68899999999998887777888999988
Q ss_pred eecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCccccccc-----C---
Q psy7357 109 VSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGL-----C--- 179 (302)
Q Consensus 109 i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~-----~--- 179 (302)
+|. .|++++++.+++.+++++++++.++ |++|... ++++|+++|+++|+++|+|+++..+..+. .
T Consensus 150 ~~~-----~d~~~l~~~i~~~~~~~~lvi~~~~~~~~G~~~-~l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~ 223 (385)
T PRK05958 150 YPH-----NDVDALEALLAKWRAGRALIVTESVFSMDGDLA-PLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEA 223 (385)
T ss_pred eCC-----CCHHHHHHHHHhccCCCeEEEEEecccCCCCcC-CHHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhh
Confidence 875 4899999999743224566666555 4789888 79999999999999999999984332110 0
Q ss_pred CCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 180 RPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 180 ~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
.......++++.++||+|+. +| |++++++++.+.+
T Consensus 224 ~~~~~~~~i~~~s~sK~~~~------~G-g~~~~~~~~~~~~ 258 (385)
T PRK05958 224 GLAGEPDVILVGTLGKALGS------SG-AAVLGSETLIDYL 258 (385)
T ss_pred CCCCCCceEEEEechhhccc------CC-cEEEcCHHHHHHH
Confidence 11112234778888998863 22 7888887665543
No 231
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=99.60 E-value=1.1e-14 Score=142.42 Aligned_cols=178 Identities=9% Similarity=0.042 Sum_probs=118.2
Q ss_pred cccHHHHHHHHHH-HHHHHhCC---Cee--eEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHh
Q psy7357 29 ARGYEQLIGELET-DLCEITGY---DKI--SFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQM 101 (302)
Q Consensus 29 sqG~l~~~~e~~~-~l~~l~g~---~~~--~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~ 101 (302)
.+|.++.++++.. .+.+.++. +.. ++..++|+ +|...++.++... .. -++||+|++++|.|+.+...+..
T Consensus 127 p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~~~~l~~~--~l-l~pGD~Vlv~~P~y~~y~~~~~l 203 (521)
T TIGR03801 127 PDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYIFDSLKAN--EL-LKKGDKIALMTPIFTPYLEIPEL 203 (521)
T ss_pred CCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhHh--hc-CCCCCEEEEeCCCcHHHHHHHHH
Confidence 3677777777764 44444332 222 56667776 4443333332100 00 16899999999998888776654
Q ss_pred --CCCEEEEeecCC--C-----CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHh--CCEEEE
Q psy7357 102 --AGMSVEPVSVRK--D-----GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEH--GGQVYL 167 (302)
Q Consensus 102 --~g~~v~~i~~~~--~-----g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~--g~lliv 167 (302)
.|++++.++.++ + ..+|+++++++++ +++++|+++|| ||||.+- +++++|.++|+++ ++++|.
T Consensus 204 ~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~---~~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~ 280 (521)
T TIGR03801 204 PRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRD---PSIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILT 280 (521)
T ss_pred hcCCcEEEEeecccccccccccCCCCHHHHHHhcC---CCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEE
Confidence 478888888753 1 5689999999887 78999999999 5999873 2588889999986 899999
Q ss_pred ecCCcccccccCCCCccCC-c-EEEeCCCcccCCCCCCCCCcceeEEEeCC
Q psy7357 168 DGANMNAQVGLCRPGDYGS-D-VSHLNLHKTFCIPHGGGGPGMGPIGVKSH 216 (302)
Q Consensus 168 D~a~~~~~~~~~~p~~~ga-D-iv~~~~hK~l~~p~~~gGp~~G~l~~~~~ 216 (302)
|.++..-.....+...... . |++.|.+|+|+. .|+|+|+++++++
T Consensus 281 DEvY~~f~~~~~sl~~~~~~~vI~v~SfSK~fg~----~G~RlG~i~~~~~ 327 (521)
T TIGR03801 281 DDVYGTFVDDFRSLFAELPYNTIGVYSFSKYFGA----TGWRLGTIALHKD 327 (521)
T ss_pred CCCchhhcccccchhhhCCCCEEEEEcchhhccC----chhhhhhhhcCch
Confidence 9986310001111111111 2 566666776665 4999999999865
No 232
>PLN02483 serine palmitoyltransferase
Probab=99.59 E-value=1.7e-14 Score=141.01 Aligned_cols=171 Identities=19% Similarity=0.188 Sum_probs=126.2
Q ss_pred ccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEe
Q psy7357 30 RGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPV 109 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i 109 (302)
.|..+...++++.+++++|.+.+ +..++|..++.+++.++. ++||.|+++++.|.+....++..|++++.+
T Consensus 142 ~g~~~~~~ele~~lA~~~g~~~a-i~~~~G~~an~~~i~al~--------~~Gd~Vi~d~~~h~s~~~~~~~~Ga~v~~~ 212 (489)
T PLN02483 142 GGTTKLHRELEELVARFVGKPAA-IVFGMGYATNSTIIPALI--------GKGGLIISDSLNHNSIVNGARGSGATIRVF 212 (489)
T ss_pred cCCcHHHHHHHHHHHHHhCCCcE-EEECCHHHHHHHHHHHhC--------CCCCEEEEcchhhHHHHHHHHHcCCeEEEE
Confidence 46678899999999999997664 455677766644444443 689999999999988887888999999999
Q ss_pred ecCCCCCCCHHHHHHHHhcc----CCCe-----EEEEEecC--CCceeccccHHHHHHHHHHhCCEEEEecCCcccccc-
Q psy7357 110 SVRKDGTIDFSDLETKVKKN----KETL-----SCLMITYP--STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVG- 177 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~----~~~t-----~~V~i~~P--n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~- 177 (302)
+.+ |++++++.+++. .++| +.++++++ |..|.+. ++++|.++|+++|+++++|+++..+..+
T Consensus 213 ~~~-----d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~-~l~~I~~la~~~~~~livDEa~s~g~~G~ 286 (489)
T PLN02483 213 QHN-----TPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELC-KLPEIVAVCKKYKAYVYLDEAHSIGAVGK 286 (489)
T ss_pred eCC-----CHHHHHHHHHhhhhccccccccCCceEEEEECCCCCCCCccc-CHHHHHHHHHHcCCEEEEECcCccCccCC
Confidence 853 677777766521 1333 55666654 5679898 7999999999999999999998543211
Q ss_pred -------cCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 178 -------LCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 178 -------~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+......+.||++++.+|+|+. .+|++++++++++.+.
T Consensus 287 ~G~g~~~~~~v~~~~~dI~~~SfSKs~g~-------~GG~i~~~~~li~~l~ 331 (489)
T PLN02483 287 TGRGVCELLGVDPADVDIMMGTFTKSFGS-------CGGYIAGSKELIQYLK 331 (489)
T ss_pred CCCchHHhcCCCcccCcEEEEecchhccc-------CceEEEcCHHHHHHHH
Confidence 0111123579999999998863 2389998887776654
No 233
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=99.59 E-value=8.3e-14 Score=133.00 Aligned_cols=171 Identities=16% Similarity=0.176 Sum_probs=117.2
Q ss_pred cccHHHHHHHHHHHHHHHhCC--CeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITGY--DKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~--~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
.+|..++++.+++.+..-.|. +..++..++|+ +|...++.++. .+||+|+++++.|+.+...+...|++
T Consensus 72 ~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G~t~al~~~~~~l~--------~~gd~Vlv~~p~y~~~~~~~~~~g~~ 143 (403)
T TIGR01265 72 SVGALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQAIEICIEALA--------NPGANILVPRPGFPLYDTRAAFSGLE 143 (403)
T ss_pred CCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecChHHHHHHHHHHhC--------CCCCEEEEeCCCchhHHHHHHHcCCE
Confidence 467666666555555443333 33455555565 44433333332 57899999999988777778889999
Q ss_pred EEEeecCC--CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcc-cccc--
Q psy7357 106 VEPVSVRK--DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMN-AQVG-- 177 (302)
Q Consensus 106 v~~i~~~~--~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~-~~~~-- 177 (302)
++.++.++ ++.+|+++++++++ +++++|++++| |++|.+. +++++|.++|+++|+++|+|.++.- ....
T Consensus 144 ~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~ 220 (403)
T TIGR01265 144 VRLYDLLPEKDWEIDLDGLEALAD---EKTVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAP 220 (403)
T ss_pred EEEecCCcccCCccCHHHHHHHhC---cCccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCC
Confidence 99998754 45799999999987 67899999999 5899874 1589999999999999999998631 1111
Q ss_pred cCCCCccC--Cc-EEEeCCCcccCCCCCCCCCcceeEEEe
Q psy7357 178 LCRPGDYG--SD-VSHLNLHKTFCIPHGGGGPGMGPIGVK 214 (302)
Q Consensus 178 ~~~p~~~g--aD-iv~~~~hK~l~~p~~~gGp~~G~l~~~ 214 (302)
..+...+. .+ |++.|..|+|+.| |.|+|++++.
T Consensus 221 ~~~~~~~~~~~~vi~~~S~SK~~~~p----GlRiG~~v~~ 256 (403)
T TIGR01265 221 FIPMASFASIVPVLSLGGISKRWVVP----GWRLGWIIIH 256 (403)
T ss_pred ccchhhhccCCcEEEEeecccccCCC----cceEEEEEEe
Confidence 11111111 12 4555667776655 8999999985
No 234
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=99.59 E-value=2.1e-14 Score=136.77 Aligned_cols=168 Identities=15% Similarity=0.197 Sum_probs=122.1
Q ss_pred ccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEe
Q psy7357 30 RGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPV 109 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i 109 (302)
-|......++++++++++|.+.+ +...+|..++.+++.++. +++|+|++++..|++....+...+++++++
T Consensus 39 yg~~~~~~~LE~~lA~~~g~e~a-l~~~sG~~a~~~~i~~l~--------~~GD~Vl~~~~~h~s~~~~~~l~~~~~~~~ 109 (392)
T PLN03227 39 YGTIDAHLELEQCMAEFLGTESA-ILYSDGASTTSSTVAAFA--------KRGDLLVVDRGVNEALLVGVSLSRANVRWF 109 (392)
T ss_pred cCChHHHHHHHHHHHHHhCCCcE-EEecCcHHHHHHHHHHhC--------CCCCEEEEeccccHHHHHHHHHcCCeEEEe
Confidence 45556899999999999999854 556678766655555543 789999999999987766666777888877
Q ss_pred ecCCCCCCCHHHHHH---HHhcc--------CCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccc
Q psy7357 110 SVRKDGTIDFSDLET---KVKKN--------KETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVG 177 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~---~i~~~--------~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~ 177 (302)
+.. |++++++ .+... +++++.|++.++ |++|.+. |+++|.++|+++|+++|+|.++.++..+
T Consensus 110 ~~~-----d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~-~l~~i~~l~~~~g~~livDe~~~~g~~g 183 (392)
T PLN03227 110 RHN-----DMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLA-PLKELVALKEEFHYRLILDESFSFGTLG 183 (392)
T ss_pred CCC-----CHHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCccc-CHHHHHHHHHHcCCEEEEECcccccccC
Confidence 753 3444444 44311 246788888887 5789998 7999999999999999999998533221
Q ss_pred c----------CCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCC
Q psy7357 178 L----------CRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPF 220 (302)
Q Consensus 178 ~----------~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~ 220 (302)
. ..| ..++|+++.+.+|.+ ||.+|++++++++++.
T Consensus 184 ~~G~g~~~~~g~~p-~~~~Div~~slsk~~-------g~~gg~v~~~~~~~~~ 228 (392)
T PLN03227 184 KSGRGSLEHAGLKP-MVHAEIVTFSLENAF-------GSVGGMTVGSEEVVDH 228 (392)
T ss_pred CCCCcHHHHcCCCC-CCCceEEEeechhhh-------hccCcEEecCHHHHHH
Confidence 1 112 246799999877755 3777888888776543
No 235
>PRK09275 aspartate aminotransferase; Provisional
Probab=99.58 E-value=1e-14 Score=142.72 Aligned_cols=182 Identities=11% Similarity=0.099 Sum_probs=121.3
Q ss_pred cccHHHHHHHHHHHHH-HHhCC---C--eeeEeeCchH-HHHHHHHHHHH--HHHHhhcCCCCCEEEEcCCCCcccHHHH
Q psy7357 29 ARGYEQLIGELETDLC-EITGY---D--KISFQPNSGA-QGEYAGLRAIQ--CYHQAQDAHHRNVCLIPVSAHGTNPASA 99 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~-~l~g~---~--~~~~~~~~Ga-~a~~a~l~a~~--~~~~~~g~~~~d~Vlv~~~~hg~~~~~~ 99 (302)
..|.+++++++.+.+. +..+. + ..++..++|+ +|...++.++. .++ ++||+|++++|.|+.+...+
T Consensus 133 ~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~~~aL~~~~ll-----~pGD~Vlv~~P~y~~Y~~~~ 207 (527)
T PRK09275 133 PDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCYIFDSLKENGLL-----KAGDKIALMTPIFTPYLEIP 207 (527)
T ss_pred CCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhhhhcC-----CCCCEEEEeCCChHHHHHHH
Confidence 6899999998887443 32222 1 2256666676 44433333321 111 68999999999988887776
Q ss_pred HhC--CCEEEEeecCC--CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHH--hCCEEEEecC
Q psy7357 100 QMA--GMSVEPVSVRK--DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHE--HGGQVYLDGA 170 (302)
Q Consensus 100 ~~~--g~~v~~i~~~~--~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~--~g~llivD~a 170 (302)
+.. +.+++.++.++ +..+|+++|+++++ +++++|+++|| ||+|.+- +.+++|+++|++ +++++|.|.+
T Consensus 208 ~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~---~~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEv 284 (527)
T PRK09275 208 ELPRYDLEVVHINADEENEWQYPDSELEKLRD---PSIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDV 284 (527)
T ss_pred HHcCCCeEEEEeecCcccCCCCCHHHHHhhcC---CCCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCC
Confidence 665 45666666543 35789999999887 88999999999 5999873 258889999954 5999999998
Q ss_pred CcccccccCCCCc-cC-CcEEEeCCCcccCCCCCCCCCcceeEEEeCC-----CCCCCC
Q psy7357 171 NMNAQVGLCRPGD-YG-SDVSHLNLHKTFCIPHGGGGPGMGPIGVKSH-----LAPFLP 222 (302)
Q Consensus 171 ~~~~~~~~~~p~~-~g-aDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~-----l~~~lp 222 (302)
+..-.....+... .. --|++.|.+|+|++ .|+|+|+++++++ +++.+|
T Consensus 285 Y~~f~~~~~s~~~~~~~~~I~v~SfSK~f~m----tG~RlG~i~~~~~~v~~~~i~~l~ 339 (527)
T PRK09275 285 YGTFVDDFRSLFAVLPYNTILVYSFSKYFGA----TGWRLGVIALHEDNVFDKLIAKLP 339 (527)
T ss_pred ChhhcccccCHHHhCCCCEEEEeehhhhccC----cHhHHhhhhcCchhHHHHHHHhcc
Confidence 6311011111111 11 12556666676664 4999999999876 555553
No 236
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=99.58 E-value=9.8e-14 Score=130.62 Aligned_cols=171 Identities=20% Similarity=0.213 Sum_probs=118.4
Q ss_pred cccHHHHHHHHHHHHHHHhCCC---eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITGYD---KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~---~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
.+|..++++.+.+.+.+..|.+ ..++..++|++..+..+..+.. + +++|.|+++++.|+.+...++..|++
T Consensus 61 ~~G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~-~-----~~gd~Vl~~~p~y~~~~~~~~~~g~~ 134 (364)
T PRK07865 61 TAGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVAWLPTLLG-L-----GPGDVVVIPELAYPTYEVGARLAGAT 134 (364)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCCCCcccEEEccChHHHHHHHHHHHc-C-----CCCCEEEECCCCcccHHHHHHhcCCE
Confidence 5788888888888888877644 5678888887532122211110 1 57899999999998888888889999
Q ss_pred EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcc-cccc--c-
Q psy7357 106 VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMN-AQVG--L- 178 (302)
Q Consensus 106 v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~-~~~~--~- 178 (302)
++.++ ++++++ . +++++|++++| |++|.+- +++++|.++|+++|+++|+|.++.. .... .
T Consensus 135 ~~~~~-------~~~~l~---~---~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~ 201 (364)
T PRK07865 135 VVRAD-------SLTELG---P---QRPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEPVS 201 (364)
T ss_pred EEecC-------ChhhCC---c---ccceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCc
Confidence 88775 223322 1 56789999999 5899763 1578899999999999999998641 1100 0
Q ss_pred -CCC----CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 179 -CRP----GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 179 -~~p----~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
..+ ++..-.+++.+.+|.|+.| |.|+|++++++++++.+.
T Consensus 202 ~~~~~~~~~~~~~~i~~~S~SK~~~~~----GlRiG~i~~~~~~~~~~~ 246 (364)
T PRK07865 202 ILDPRVCGGDHTGLLAVHSLSKQSNLA----GYRAGFVAGDPALVAELL 246 (364)
T ss_pred cccccccCCccceEEEEeechhccCCC----ceeeEEEecCHHHHHHHH
Confidence 001 1111237777778877655 899999999887766553
No 237
>PRK03967 histidinol-phosphate aminotransferase; Provisional
Probab=99.57 E-value=1.5e-14 Score=134.87 Aligned_cols=165 Identities=20% Similarity=0.240 Sum_probs=119.4
Q ss_pred HHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCCC
Q psy7357 37 GELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGT 116 (302)
Q Consensus 37 ~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g~ 116 (302)
.++++.+++.+|.+..++..++|++.. ..+.++. -++|+|+++.+.|+.+...++..|.+++.++.++++.
T Consensus 58 ~~lr~~ia~~~~~~~~~I~~t~G~~~~--l~~~~~~-------~~gd~V~v~~P~y~~~~~~~~~~g~~~~~v~~~~~~~ 128 (337)
T PRK03967 58 DPLREAIAEFYGLDAENIAVGNGSDEL--ISYLVKL-------FEGKHIVITPPTFGMYSFYAKLNGIPVIDVPLKEDFT 128 (337)
T ss_pred HHHHHHHHHHhCcCcceEEEcCCHHHH--HHHHHHH-------hCCCeEEEeCCChHHHHHHHHHcCCeEEEeecCCCCC
Confidence 567777888888888888888887532 1222221 1578999999998877777788999999999987778
Q ss_pred CCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccc--cCCCCccCCc-EEEeC
Q psy7357 117 IDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVG--LCRPGDYGSD-VSHLN 192 (302)
Q Consensus 117 iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~--~~~p~~~gaD-iv~~~ 192 (302)
+|++++++.+ ++++++++++| |+||.+. +.++|.++++ +++++|+|.++.- +.. .........+ |++.|
T Consensus 129 ~d~~~l~~~~----~~~~~v~~~~P~NPtG~~~-~~~~l~~i~~-~~~~ii~De~y~~-~~~~~~~~~~~~~~~vi~l~S 201 (337)
T PRK03967 129 IDGERIAEKA----KNASAVFICSPNNPTGNLQ-PEEEILKVLE-TGKPVVLDEAYAE-FSGKSLIGLIDEYPNLILLRT 201 (337)
T ss_pred cCHHHHHHhc----cCCCEEEEeCCCCCCCCCC-CHHHHHHHHh-cCCEEEEECchhh-hcccchHHHHhhCCCEEEEec
Confidence 9999998864 46778889999 5999988 6899999995 6999999998631 110 0000011123 45565
Q ss_pred CCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 193 LHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 193 ~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
..|+|+.| |.|+|++++++++++.+
T Consensus 202 ~SK~~~l~----GlRiG~iv~~~~~i~~~ 226 (337)
T PRK03967 202 FSKAFGLA----GIRAGYAIANEEIIDAL 226 (337)
T ss_pred chHhhcch----hhhheeeecCHHHHHHH
Confidence 66666544 89999999987766554
No 238
>PRK09064 5-aminolevulinate synthase; Validated
Probab=99.56 E-value=2.9e-13 Score=129.30 Aligned_cols=171 Identities=19% Similarity=0.175 Sum_probs=119.8
Q ss_pred cHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEee
Q psy7357 31 GYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVS 110 (302)
Q Consensus 31 G~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~ 110 (302)
|..+...++++.+++++|.+. .+..++|++++.+++..+..+ .+++.|+.....|++....+...+.++..++
T Consensus 88 g~~~~~~~l~~~la~~~g~~~-~~~~~sG~~an~~ai~~l~~~------~~~~~i~~~~~~h~s~~~~~~~~~~~~~~~~ 160 (407)
T PRK09064 88 GTNHYHVELERELADLHGKEA-ALVFTSGYVSNDATLSTLAKL------IPDCVIFSDELNHASMIEGIRRSRCEKHIFR 160 (407)
T ss_pred cCHHHHHHHHHHHHHHhCCCc-EEEECcHHHHHHHHHHHHhCC------CCCCEEEEeCcchHHHHHHHHHcCCcEEEEC
Confidence 556788999999999999754 466778887765665554311 2456655555556555455566677776555
Q ss_pred cCCCCCCCHHHHHHHHhccC-CCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccc-cccC-----CCC
Q psy7357 111 VRKDGTIDFSDLETKVKKNK-ETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQ-VGLC-----RPG 182 (302)
Q Consensus 111 ~~~~g~iD~~~l~~~i~~~~-~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~-~~~~-----~p~ 182 (302)
. .|++++++.++... +++++|++++| |++|.+. |+++|.++|+++|+++++|++|..+. +... ..+
T Consensus 161 ~-----~d~~~le~~l~~~~~~~~~~v~~~~v~s~~G~~~-~l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~ 234 (407)
T PRK09064 161 H-----NDVAHLEELLAAADPDRPKLIAFESVYSMDGDIA-PIAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDG 234 (407)
T ss_pred C-----CCHHHHHHHHHhccCCCCeEEEEeCCCCCCcccc-CHHHHHHHHHHcCCEEEEECCCcccccCCCCCChHHhcC
Confidence 3 48899999886432 46889999998 5889998 79999999999999999999986442 2110 011
Q ss_pred -ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 183 -DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 183 -~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
....|+++.+++|.|+.+ +|++++++++++.+
T Consensus 235 ~~~~~div~~t~sKa~g~~-------GG~~~~~~~~~~~l 267 (407)
T PRK09064 235 LMDRIDIIEGTLAKAFGVM-------GGYIAGSAALVDAV 267 (407)
T ss_pred CCCCCeEEEEecchhhhcc-------CceEecCHHHHHHH
Confidence 123589988888988632 28888887765543
No 239
>PRK06434 cystathionine gamma-lyase; Validated
Probab=99.56 E-value=1.2e-13 Score=130.85 Aligned_cols=161 Identities=14% Similarity=0.140 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH----HHHHhCCCEEEEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP----ASAQMAGMSVEPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~----~~~~~~g~~v~~i 109 (302)
....++++.++++.|.+.+ +.+.||+.|..+++.++. ++||+||++...|+... ..+...|++++++
T Consensus 64 P~~~~lE~~la~leg~~~a-v~~sSG~aAi~~al~all--------~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~v~fv 134 (384)
T PRK06434 64 PTVQAFEEKYAVLENAEHA-LSFSSGMGAITSAILSLI--------KKGKRILSISDLYGQTFYFFNKVLKTLGIHVDYI 134 (384)
T ss_pred hhHHHHHHHHHHHhCCCcE-EEeCCHHHHHHHHHHHHh--------CCCCEEEEecCccchHHHHHHHHHHhcCcEEEEE
Confidence 6788999999999999875 567788877656666553 68999999887766543 2355789999999
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcE
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDV 188 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDi 188 (302)
++++...++ ++ .+++++|++..| |+++.+. |+++|+++||++| +++|+++... ...+|-..|+|+
T Consensus 135 d~~~~~~~~-------l~--~~~tklv~~e~~snpt~~v~-Di~~I~~la~~~~--lvVD~t~~s~--~~~~pl~~gaDi 200 (384)
T PRK06434 135 DTDRLNSLD-------FD--PSNYDLIYAESITNPTLKVP-DIKNVSSFCHEND--VIVDATFASP--YNQNPLDLGADV 200 (384)
T ss_pred CCCChhhee-------ec--CCCeeEEEEEcCCCCCceee-cHHHHHHHHHHcC--eEEECCCCCc--ccCCchhcCCCE
Confidence 985423222 33 147899999998 5888888 8999999999998 4579885322 234577789999
Q ss_pred EEeCCCcccCCCCCCCCCcceeEEEeC-CCCCC
Q psy7357 189 SHLNLHKTFCIPHGGGGPGMGPIGVKS-HLAPF 220 (302)
Q Consensus 189 v~~~~hK~l~~p~~~gGp~~G~l~~~~-~l~~~ 220 (302)
++.|.||+++++- +--+|.+++++ ++.++
T Consensus 201 vv~S~tK~i~G~~---d~~gG~vv~~~~~~~~~ 230 (384)
T PRK06434 201 VIHSATKYISGHS---DVVMGVAGTNNKSIFNN 230 (384)
T ss_pred EEeecccccCCCC---CceEEEEecCcHHHHHH
Confidence 9999999998431 11267887753 44443
No 240
>PLN02672 methionine S-methyltransferase
Probab=99.56 E-value=2.3e-13 Score=141.47 Aligned_cols=179 Identities=12% Similarity=0.163 Sum_probs=125.8
Q ss_pred ccHHHHHHHHHHHHHHHhCCCee---eEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEE
Q psy7357 30 RGYEQLIGELETDLCEITGYDKI---SFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSV 106 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~~---~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v 106 (302)
.|..+...++++++++.+|++.. ++..++|+++.+. .+++.+. ++||.|++++|.|+.+...++..|.++
T Consensus 730 ~g~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL~--lll~aLl-----~pGD~VLVp~PtY~~Y~~~a~~~Ga~v 802 (1082)
T PLN02672 730 ESETDPRPSILQFIKSNYGFPTDSCTEFVYGDTSLALFN--KLVLCCV-----QEGGTLCFPAGSNGTYVSAAKFLKANF 802 (1082)
T ss_pred CCChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHHH--HHHHHHc-----CCCCEEEEeCCChHHHHHHHHHcCCEE
Confidence 34456678889999998898764 6777888753321 2223222 689999999999998888999999999
Q ss_pred EEeecCC--CCCCCHHHHHHHHhccCCCeEEEEEecC--CCceec--cccHHHHHHHHHHhCCEEEEecCCc-ccccccC
Q psy7357 107 EPVSVRK--DGTIDFSDLETKVKKNKETLSCLMITYP--STFGVF--EENITDVCELIHEHGGQVYLDGANM-NAQVGLC 179 (302)
Q Consensus 107 ~~i~~~~--~g~iD~~~l~~~i~~~~~~t~~V~i~~P--n~~G~~--~~di~~I~~ia~~~g~llivD~a~~-~~~~~~~ 179 (302)
+.+|+++ +..+|+++|++++++ .+.+.|+++|| ||||.+ .+++++|.++|+++|+++|+|.++. .....-.
T Consensus 803 v~Vpl~~e~gf~lD~d~Le~al~~--~~~~~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~ 880 (1082)
T PLN02672 803 RRIPTKSSDGFKLTAKTLASTLET--VKKPWVYISGPTINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSG 880 (1082)
T ss_pred EEEecccccCCCCCHHHHHHHhcc--CCCCEEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCC
Confidence 9999974 357899999999972 13457889998 599987 2268999999999999999999873 1111100
Q ss_pred ------CC-C-ccC-----CcEEE-eCCCcccCCCCCCCCCcceeEEEeCC-CCCCC
Q psy7357 180 ------RP-G-DYG-----SDVSH-LNLHKTFCIPHGGGGPGMGPIGVKSH-LAPFL 221 (302)
Q Consensus 180 ------~p-~-~~g-----aDiv~-~~~hK~l~~p~~~gGp~~G~l~~~~~-l~~~l 221 (302)
.+ . .+. ..+++ .+..|.++ ++|.|+||++++++ +++.+
T Consensus 881 ~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~----lpGLRIGylIap~~eLi~~l 933 (1082)
T PLN02672 881 WGGWDLKSILSRLKSSNPSFAVALLGGLSTELL----SGGHEFGFLALNDSVLIDAF 933 (1082)
T ss_pred CcccchhhHHHHhccccCCceEEEEeCcHHhhc----cHHHHheeEEeCCHHHHHHH
Confidence 00 0 010 12444 44555555 55999999999654 66555
No 241
>KOG0053|consensus
Probab=99.56 E-value=4.7e-14 Score=131.66 Aligned_cols=169 Identities=17% Similarity=0.127 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH----HHhCCCEEEE
Q psy7357 33 EQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS----AQMAGMSVEP 108 (302)
Q Consensus 33 l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~----~~~~g~~v~~ 108 (302)
-.....+++.++++.|.+.+.+ ..||-.|..+++..+. +.+++|+..+..|+....+ ....|++...
T Consensus 76 nPt~~~le~~iaal~ga~~~l~-fsSGmaA~~~al~~L~--------~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~ 146 (409)
T KOG0053|consen 76 NPTRDVLESGIAALEGAAHALL-FSSGMAAITVALLHLL--------PAGDHIVATGDVYGGTLRILRKFLPKFGGEGDF 146 (409)
T ss_pred CCchHHHHHHHHHHhCCceEEE-ecccHHHHHHHHHHhc--------CCCCcEEEeCCCcccHHHHHHHHHHHhCceeee
Confidence 3567889999999999987544 4567654544444433 6788888888877665443 3477888888
Q ss_pred eecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCc
Q psy7357 109 VSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSD 187 (302)
Q Consensus 109 i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaD 187 (302)
+..+ |+++++++++ ++|++|++++| ||+..+. ||++|+++||++|++++||.. ++-....+|-.+|||
T Consensus 147 vd~~-----~~~~~~~~i~---~~t~~V~~ESPsNPll~v~-DI~~l~~la~~~g~~vvVDnT--f~~p~~~~pL~lGAD 215 (409)
T KOG0053|consen 147 VDVD-----DLKKILKAIK---ENTKAVFLESPSNPLLKVP-DIEKLARLAHKYGFLVVVDNT--FGSPYNQDPLPLGAD 215 (409)
T ss_pred echh-----hHHHHHHhhc---cCceEEEEECCCCCccccc-cHHHHHHHHhhCCCEEEEeCC--cCcccccChhhcCCC
Confidence 8763 7889999998 78999999999 7988888 899999999999999999963 555556788899999
Q ss_pred EEEeCCCcccCCCCCCCCCcceeEEEe-CCCCCCCCCC
Q psy7357 188 VSHLNLHKTFCIPHGGGGPGMGPIGVK-SHLAPFLPVH 224 (302)
Q Consensus 188 iv~~~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~lpg~ 224 (302)
||+.|..|+|++... --.|.++.+ +++++++...
T Consensus 216 IV~hSaTKyi~Ghsd---vi~G~iv~n~~~~~~~l~~~ 250 (409)
T KOG0053|consen 216 IVVHSATKYIGGHSD---VIGGSVVLNSEELASRLKFL 250 (409)
T ss_pred EEEEeeeeeecCCcc---eeeeEEecCcHHHHHHHHHH
Confidence 999999999985422 246788887 6777766543
No 242
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=99.56 E-value=1.4e-13 Score=131.21 Aligned_cols=228 Identities=16% Similarity=0.216 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCC-cccHHHHHhCCCEEEEeecC
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAH-GTNPASAQMAGMSVEPVSVR 112 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~h-g~~~~~~~~~g~~v~~i~~~ 112 (302)
..+.++++.+++++|++.+ +.+.+|+.|+.. +.++. -++||+| +.+.| .+........|...+.++.+
T Consensus 71 ~s~~~lE~~va~~~G~~~a-v~v~sGT~Al~l-l~~l~-------l~pGDeV--psn~~f~Tt~ahIe~~Gav~vDi~~d 139 (450)
T TIGR02618 71 RNFYHLERTVRELYGFKYV-VPTHQGRGAENL-LSQIA-------IKPGDYV--PGNMYFTTTRYHQEKNGATFVDIIID 139 (450)
T ss_pred CcHHHHHHHHHHHHCCCeE-EEcCCHHHHHHH-HHHhC-------CCCcCEE--CCceeHHHHHHHHHhCCeEEEeeecc
Confidence 3578999999999999985 456788877633 22221 2678875 55555 33344457788877777543
Q ss_pred ----------CCCCCCHHHHHHHHhcc-CCCeEEEEEecC-CCc-eec---cccHHHHHHHHHHhCCEEEEecCCcc--c
Q psy7357 113 ----------KDGTIDFSDLETKVKKN-KETLSCLMITYP-STF-GVF---EENITDVCELIHEHGGQVYLDGANMN--A 174 (302)
Q Consensus 113 ----------~~g~iD~~~l~~~i~~~-~~~t~~V~i~~P-n~~-G~~---~~di~~I~~ia~~~g~llivD~a~~~--~ 174 (302)
.+|.+|+++|+++|+++ .++++.|.+.++ |.. |.. . ++++|.++|+++|+.+|.|+|+.. +
T Consensus 140 ea~~~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~-~l~~I~elA~~~Gl~vi~DaAR~~gNA 218 (450)
T TIGR02618 140 EAHDAQLNIPFKGNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMA-NMREVRELCEAHGIKVFYDATRCVENA 218 (450)
T ss_pred cccccccCCCCCCCcCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHH-HHHHHHHHHHHcCCEEEEEccchhhCh
Confidence 35889999999999843 224556677666 444 565 4 799999999999999999999865 2
Q ss_pred cc------cc-CCCC-------ccCCcEEEeCCCcccCCCCCCCCCcceeEEEe-CCCCCCCCCCcc---cC-CCCcch-
Q psy7357 175 QV------GL-CRPG-------DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVK-SHLAPFLPVHPL---SS-IDSSIG- 234 (302)
Q Consensus 175 ~~------~~-~~p~-------~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~lpg~~~---~~-~~~~l~- 234 (302)
.. +. ..+- -..+|.+++|++|+++. |-+|+++++ +++.+++....+ |. +...|.
T Consensus 219 ~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~------~~GG~l~~~d~~l~~k~r~~~~~~eG~~tyGgla~ 292 (450)
T TIGR02618 219 YFIKEREQGYEDKSIAEILKEMMSYADGCTMSGKKDCLV------NIGGFLCMNDDEMFQSAKELVVVFEGMPSYGGLAG 292 (450)
T ss_pred hhhhcccccccCCCHHHHHHHHhccCcEEEEeeccCCCC------CCceEEEeCCHHHHHHHHHHhhhcCCccccCchhh
Confidence 21 01 1111 11589999999998874 556889876 466666544321 11 122221
Q ss_pred -hhhHHHHhhHhhHHHHH--------HHHH-HHh-cccccccccCCCcceeEEEEEEeccc
Q psy7357 235 -AVSAAHYGSASILPISW--------AYIR-RLE-SHYKTLFRSSRSGLVAHEFVIDVRDF 284 (302)
Q Consensus 235 -~~~a~~~~~~~~~~~~~--------~y~~-~l~-~g~~~~~~~~~~~~~~he~~~~~~~~ 284 (302)
.+.|..++--....+.| .|+. +|. .|++++. ++. .|.+.||...+
T Consensus 293 r~~~ala~gL~e~~~~~y~~~r~~~a~~La~~L~~~Gvpv~~-p~g----gh~V~vda~~~ 348 (450)
T TIGR02618 293 RDMEAMAIGIREAVDYEYIEHRVKQVRYLGDKLKAAGVPIVE-PVG----GHAVFLDARRF 348 (450)
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHCCCcccC-CCC----cceEEEEhHHh
Confidence 12211111111111111 3444 665 5898864 345 79999997754
No 243
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=99.55 E-value=2e-13 Score=128.55 Aligned_cols=167 Identities=22% Similarity=0.188 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH----HHHhCCCEEEE
Q psy7357 33 EQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA----SAQMAGMSVEP 108 (302)
Q Consensus 33 l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~~ 108 (302)
-.-.+.+++.+++|-|.+.+.. ..||-.|..++++++. ++||+|++++..||.... ..+..|+++.+
T Consensus 62 nPT~~~lE~~~a~LEg~~~~~a-fsSGmaAI~~~~l~ll--------~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~ 132 (396)
T COG0626 62 NPTRDALEEALAELEGGEDAFA-FSSGMAAISTALLALL--------KAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTF 132 (396)
T ss_pred CccHHHHHHHHHHhhCCCcEEE-ecCcHHHHHHHHHHhc--------CCCCEEEecCCccchHHHHHHHHHHhcCeEEEE
Confidence 3567899999999999887644 4577666644455544 679999999998886654 34578888888
Q ss_pred eecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCc
Q psy7357 109 VSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSD 187 (302)
Q Consensus 109 i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaD 187 (302)
++. .|.+++++++.+ ++|++|+++.| |++--+. ||++|+++||++|++++||. .++...+.+|-++|+|
T Consensus 133 ~d~-----~~~~~~~~~~~~--~~tk~v~lEtPsNP~l~v~-DI~~i~~~A~~~g~~vvVDN--TfatP~~q~PL~~GaD 202 (396)
T COG0626 133 VDP-----GDDEALEAAIKE--PNTKLVFLETPSNPLLEVP-DIPAIARLAKAYGALVVVDN--TFATPVLQRPLELGAD 202 (396)
T ss_pred ECC-----CChHHHHHHhcc--cCceEEEEeCCCCcccccc-cHHHHHHHHHhcCCEEEEEC--CcccccccChhhcCCC
Confidence 875 355566666662 58999999999 6877778 89999999999999999994 5677677899999999
Q ss_pred EEEeCCCcccCCCCCCCCCcceeEEEe-CCCCCCC
Q psy7357 188 VSHLNLHKTFCIPHGGGGPGMGPIGVK-SHLAPFL 221 (302)
Q Consensus 188 iv~~~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~l 221 (302)
|++-|+.|.+++... --.|.++++ +++.+++
T Consensus 203 IVvhSaTKyl~GHsD---vl~G~v~~~~~~~~~~~ 234 (396)
T COG0626 203 IVVHSATKYLGGHSD---VLGGVVLTPNEELYELL 234 (396)
T ss_pred EEEEeccccccCCcc---eeeeEEecChHHHHHHH
Confidence 999999999985422 235666655 4555544
No 244
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=99.55 E-value=2.2e-13 Score=128.67 Aligned_cols=167 Identities=14% Similarity=0.112 Sum_probs=114.1
Q ss_pred cccccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEE
Q psy7357 27 DQARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSV 106 (302)
Q Consensus 27 e~sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v 106 (302)
+...|..+.++++++.+++++|.+.+ +..++|+.++.+....+. +++|.|++....|++.....+......
T Consensus 49 ~~~~g~~~~~~~~e~~la~~~~~~~~-l~~~sG~~a~~~~~~~~~--------~~~d~ii~d~~~H~sv~~~~~~~~~~~ 119 (370)
T PRK05937 49 RAILGPSSLLDDLEHKIAHFHGAPEA-FIVPSGYMANLGLCAHLS--------SVTDYVLWDEQVHISVVYSLSVISGWH 119 (370)
T ss_pred CcccCChHHHHHHHHHHHHHhCCCeE-EEECChHHHHHHHHHHhC--------CCCCEEEEEhhhhHHHHHHHHHcCCce
Confidence 66678889999999999999999765 667888876633222211 467888887888877766554432222
Q ss_pred EEeecCCCCCCCHHHHHHHHhccC---CCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCC-
Q psy7357 107 EPVSVRKDGTIDFSDLETKVKKNK---ETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRP- 181 (302)
Q Consensus 107 ~~i~~~~~g~iD~~~l~~~i~~~~---~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p- 181 (302)
+.+ +..|+++|++.+++.+ +++.+|+++++ |++|.+. |+++|+++|+++|+++++|++|..+..+..--
T Consensus 120 ~~~-----~~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~-pl~eI~~l~~~~~~~livDea~~~G~~g~~g~g 193 (370)
T PRK05937 120 QSF-----RHNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLA-PLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKG 193 (370)
T ss_pred EEe-----cCCCHHHHHHHHHhhhccCCCcEEEEEecCCCCCCCcc-CHHHHHHHHHHcCCEEEEECCccccccCCCCCc
Confidence 233 3479999999997432 34667778887 4889999 79999999999999999999996554332100
Q ss_pred --CccC---CcEEEeCCCcccCCCCCCCCCcceeEEEe
Q psy7357 182 --GDYG---SDVSHLNLHKTFCIPHGGGGPGMGPIGVK 214 (302)
Q Consensus 182 --~~~g---aDiv~~~~hK~l~~p~~~gGp~~G~l~~~ 214 (302)
..++ .++++.+.+|.++ ++|+|+++.+
T Consensus 194 ~~~~~~~~~~~~~~~tlsK~~g------~~G~~vl~~~ 225 (370)
T PRK05937 194 FCHSLGYENFYAVLVTYSKALG------SMGAALLSSS 225 (370)
T ss_pred hHHhhCCCCCcEEEEechhhhh------cCceEEEcCH
Confidence 0233 2355666667664 3356666543
No 245
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=99.55 E-value=9.5e-14 Score=132.85 Aligned_cols=172 Identities=15% Similarity=0.202 Sum_probs=117.9
Q ss_pred cccHHHHHHHHHHHHHHHhCC--CeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE-
Q psy7357 29 ARGYEQLIGELETDLCEITGY--DKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS- 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~--~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~- 105 (302)
.+|..++++.+.+.+.+..|+ +..++..++|++..+..+..+ + +++|+|++++|.|+.+...++..|.+
T Consensus 75 ~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~l~~~---~-----~~gd~V~v~~P~Y~~~~~~~~~~g~~~ 146 (409)
T PRK07590 75 EQGYDFLREKIAENDYQARGCDISADEIFISDGAKCDTGNILDI---F-----GPDNTIAVTDPVYPVYVDTNVMAGRTG 146 (409)
T ss_pred CCCCHHHHHHHHHHHHHhcCCcCChhhEEECCCHHHHHHHHHHh---c-----CCCCEEEEeCCCCcchHHHHHHcCCcc
Confidence 578888888888877666654 556788888885321222222 1 58899999999999888888888886
Q ss_pred ----------EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCc
Q psy7357 106 ----------VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANM 172 (302)
Q Consensus 106 ----------v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~ 172 (302)
++.+|+++++...++ +.+ +++++|+++|| ||||.+- +.+++|.++|+++|+++|.|.++.
T Consensus 147 ~~~~~~~~~~~~~v~~~~~~~~~~d-----~~~--~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~ 219 (409)
T PRK07590 147 EANEDGRYSGIVYLPCTAENNFVPE-----LPE--EKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYE 219 (409)
T ss_pred cccccccccceeEeecccccCCccc-----Ccc--cCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccch
Confidence 899998754322222 111 57889999999 6999872 258889999999999999999863
Q ss_pred c-cccc-cCCC-Ccc-C-Cc--EEEeCCCcccCCCCCCCCCcceeEEEeCCCCC
Q psy7357 173 N-AQVG-LCRP-GDY-G-SD--VSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAP 219 (302)
Q Consensus 173 ~-~~~~-~~~p-~~~-g-aD--iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~ 219 (302)
- .... ...+ ... + .+ |++.|.+|+|+.| |.|+|++++++++++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~p----GlRiG~~i~~~~li~ 269 (409)
T PRK07590 220 AFISDPSLPHSIYEIEGARECAIEFRSFSKTAGFT----GTRCAYTVVPKELKG 269 (409)
T ss_pred hhccCCCCCcchhhCCCcccceEEEecCccccCCc----CceeEEEEcCHHHhh
Confidence 1 1111 1011 111 1 12 4456667777654 899999999987776
No 246
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=99.55 E-value=3.3e-13 Score=126.87 Aligned_cols=168 Identities=15% Similarity=0.130 Sum_probs=116.3
Q ss_pred HHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCCC
Q psy7357 37 GELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGT 116 (302)
Q Consensus 37 ~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g~ 116 (302)
.++++.+++.++++..++..++|++. +..+.++.+ .+++.|++++|.|+.+...++..|.+++.+|.+.++.
T Consensus 60 ~~Lr~aia~~~~v~~~~I~it~G~~~--~i~~~~~~l------~~g~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~ 131 (360)
T PRK07392 60 RELRLALAQHHQLPPEWILPGNGAAE--LLTWAGREL------AQLRAVYLITPAFGDYRRALRAFGATVKELPLPLDQP 131 (360)
T ss_pred HHHHHHHHHHhCcChhhEEECCCHHH--HHHHHHHHh------CCCCeEEEECCCcHHHHHHHHHcCCeEEEEecccccC
Confidence 36777788888988888888888852 222233322 3567999999999888888889999999999975543
Q ss_pred -----CCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcc-cccc-cCCC---CccC
Q psy7357 117 -----IDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMN-AQVG-LCRP---GDYG 185 (302)
Q Consensus 117 -----iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~-~~~~-~~~p---~~~g 185 (302)
.|++++++.. +++++++++|| ||||.+- +.++|.+++++++. +|+|.++.- .... ..+. ....
T Consensus 132 ~~~~~~~~~~~~~~~----~~~~~~~l~nP~NPTG~~~-~~~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~ 205 (360)
T PRK07392 132 SPGLTLRLQTLPPQL----TPNDGLLLNNPHNPTGKLW-SREAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEY 205 (360)
T ss_pred CcccccCHHHHHHhc----cCCCEEEEeCCCCCCCCCc-CHHHHHHHHHHCCE-EEEECchhhhccCccccchHHHhhcC
Confidence 3566655442 46788999999 5999987 68899999999985 567998631 1111 0010 0111
Q ss_pred Cc-EEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 186 SD-VSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 186 aD-iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
.. |++.|..|+|+.| |.|+|++++++++++.+.
T Consensus 206 ~~vi~i~S~SK~~~l~----GlRiG~~v~~~~~~~~~~ 239 (360)
T PRK07392 206 PNLIILRSLTKFYSLP----GLRLGYAIAHPDRLQRWQ 239 (360)
T ss_pred CCEEEEEechhhhcCC----chheeeeeCCHHHHHHHH
Confidence 12 5555666766654 899999999877766553
No 247
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=99.55 E-value=5.7e-13 Score=122.39 Aligned_cols=247 Identities=19% Similarity=0.216 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHHHHHhCCCe--eeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEE
Q psy7357 32 YEQLIGELETDLCEITGYDK--ISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEP 108 (302)
Q Consensus 32 ~l~~~~e~~~~l~~l~g~~~--~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~ 108 (302)
..++.+.++.+.++-.+.+. ..+....|- .+. .++++.+ .++||.|++..|.|+......+..|-+++.
T Consensus 62 ~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi---~~~I~~~-----T~~gd~Vvi~tPvY~PF~~~i~~n~R~~i~ 133 (388)
T COG1168 62 SDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGI---SLAIRAL-----TKPGDGVVIQTPVYPPFYNAIKLNGRKVIE 133 (388)
T ss_pred CHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHhH---HHHHHHh-----CcCCCeeEecCCCchHHHHHHhhcCcEEEe
Confidence 35688899999999887653 455444453 434 3334433 168999999999987677778888999999
Q ss_pred eecCC-CC--CCCHHHHHHHHhccCCCeEEEEEecC-CCceec--cccHHHHHHHHHHhCCEEEEecCCc-ccccc----
Q psy7357 109 VSVRK-DG--TIDFSDLETKVKKNKETLSCLMITYP-STFGVF--EENITDVCELIHEHGGQVYLDGANM-NAQVG---- 177 (302)
Q Consensus 109 i~~~~-~g--~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~--~~di~~I~~ia~~~g~llivD~a~~-~~~~~---- 177 (302)
.|+.. ++ .+|+++||+++.+ +++++.++||| ||+|.+ .+++.+|+++|.+||+++|.|+.|. .-+.+
T Consensus 134 ~pL~~~~~~y~iD~~~LE~~~~~--~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~ 211 (388)
T COG1168 134 NPLVEDDGRYEIDFDALEKAFVD--ERVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHI 211 (388)
T ss_pred ccccccCCcEEecHHHHHHHHhc--CCccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCcc
Confidence 99863 44 5799999999983 66799999999 799987 2379999999999999999999762 11111
Q ss_pred -cCCCCccCCc--EEEeCCCcccCCCCCCCCCcceeEEEeC-C----CCCCCCCCcccCCCCcchhhh--HHH-----Hh
Q psy7357 178 -LCRPGDYGSD--VSHLNLHKTFCIPHGGGGPGMGPIGVKS-H----LAPFLPVHPLSSIDSSIGAVS--AAH-----YG 242 (302)
Q Consensus 178 -~~~p~~~gaD--iv~~~~hK~l~~p~~~gGp~~G~l~~~~-~----l~~~lpg~~~~~~~~~l~~~~--a~~-----~~ 242 (302)
........+| +.+.+..|||..+ |-..++++... + +.++|+....+ ....++-+| |+. |+
T Consensus 212 ~~a~ls~~~a~~~it~~saSKtFNla----GL~~a~~Ii~n~~lr~~~~~~l~~~~~~-~~n~lg~~A~~aAY~~G~~WL 286 (388)
T COG1168 212 PFASLSERFADNSITLTSASKTFNLA----GLKCAYIIISNRELRAKFLKRLKRNGLH-GPSALGIIATEAAYNQGEPWL 286 (388)
T ss_pred chhhcChhhhcceEEEeeccccccch----hhhheeEEecCHHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHhchHHH
Confidence 1111222234 6667779999865 77778777763 3 34444422211 112222221 111 11
Q ss_pred hHh--hHHHHHHHHH-HHh---cccccccccCCCcceeEEEEEEeccccccCCCCHHHHHHHhhcC
Q psy7357 243 SAS--ILPISWAYIR-RLE---SHYKTLFRSSRSGLVAHEFVIDVRDFKKSANIEAVDIAKRLMDY 302 (302)
Q Consensus 243 ~~~--~~~~~~~y~~-~l~---~g~~~~~~~~~~~~~~he~~~~~~~~~~~~g~~~~~~~~~l~~~ 302 (302)
..+ .++.++.|++ .|. .++++.- |.| +-..=+|++. +|++.+++++.|+|.
T Consensus 287 d~L~~yl~~N~~~~~~~l~~~~P~v~v~~--p~g---TYL~WLD~r~----l~l~d~~l~~~ll~~ 343 (388)
T COG1168 287 DELLEYLKDNRDYVADFLNKHLPGVKVTE--PQG---TYLAWLDCRE----LGLDDSELAEFLLEE 343 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCcEEec--CCC---ceeeeeeccc----cCCChHHHHHHHHHh
Confidence 111 1233335555 343 4677643 332 5677789885 578889999998863
No 248
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=99.54 E-value=3.5e-14 Score=133.77 Aligned_cols=169 Identities=12% Similarity=0.090 Sum_probs=121.0
Q ss_pred ccccHHHHHHHHHHHHHHHhCCC--e-eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHH-HHHhC
Q psy7357 28 QARGYEQLIGELETDLCEITGYD--K-ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPA-SAQMA 102 (302)
Q Consensus 28 ~sqG~l~~~~e~~~~l~~l~g~~--~-~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~-~~~~~ 102 (302)
.+.-+.++++++++.+++++|.+ . +.+..++|+.+.++++..+. .+++++++. ...|+.+.. .++.+
T Consensus 42 r~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~~nl~--------~~g~~~l~i~~G~fg~r~~~~a~~~ 113 (360)
T PRK05355 42 RSKEFEAVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVPMNLL--------GGGKKADYVDTGSWSKKAIKEAKKY 113 (360)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHHHHhcC--------CCCCeEEEEECCHHHHHHHHHHHHh
Confidence 35556799999999999999973 2 34556777787778877765 455554444 445554433 66777
Q ss_pred CCEEEEeecCC-CCCCCHHHHHH-HHhccCCCeEEEEEec-CCCceeccccHHHHHHHHHHhCCEEEEecCCcccccccC
Q psy7357 103 GMSVEPVSVRK-DGTIDFSDLET-KVKKNKETLSCLMITY-PSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLC 179 (302)
Q Consensus 103 g~~v~~i~~~~-~g~iD~~~l~~-~i~~~~~~t~~V~i~~-Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~ 179 (302)
|.. ..++.++ .|..+..++++ .++ +++++|.+++ .|++|++++|+++| +|++++||+++.++...+
T Consensus 114 g~~-~~~~~~~~~g~~~~~~~~~~~l~---~~~~~V~~th~eTstGv~~~~i~~i------~g~l~vVDavss~g~~~i- 182 (360)
T PRK05355 114 GEV-NVAASSEDDGFTYIPPLDEWQLS---DDAAYVHYTSNETIDGTEFHELPDT------GDVPLVADMSSDILSRPI- 182 (360)
T ss_pred CCc-eEEecccccCCCCCCChhhccCC---CCCCEEEEccCCCcceEecCccccc------CCCcEEEEcCccccCccC-
Confidence 865 6666654 56666666666 676 5677777776 56899997457766 799999999986655443
Q ss_pred CCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 180 RPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 180 ~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
+..++ |++++++||+|+ | ||+|+++++++++++++.
T Consensus 183 dv~~~--d~~~~ssqK~lg-P-----~Glg~l~~s~~~l~~~~~ 218 (360)
T PRK05355 183 DVSKF--GLIYAGAQKNIG-P-----AGLTIVIVREDLLGRALP 218 (360)
T ss_pred CHHHc--cEEEEecccccc-C-----CceEEEEECHHHHhhccc
Confidence 34444 799999999886 5 689999999988877654
No 249
>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]
Probab=99.53 E-value=1.6e-13 Score=132.73 Aligned_cols=168 Identities=20% Similarity=0.195 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCC
Q psy7357 35 LIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKD 114 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~ 114 (302)
.+.|.|+..+++||.+...++.+++|.|+.++.+++. ++||+||++++.|-+......+.|+..+++....+
T Consensus 71 ~i~eAqe~aA~~fgAd~tyFvvNGTS~ank~vi~a~~--------~~GD~VLvdRN~HKSi~~glilaGa~Pvyl~p~~n 142 (557)
T COG1982 71 PIKEAQELAARVFGADHTYFVVNGTSTANKAVINAVL--------TPGDKVLVDRNCHKSIHHGLILAGATPVYLEPSRN 142 (557)
T ss_pred cHHHHHHHHHHHhCCCceEEEECCccHHHHHHHHhhc--------CCCCEEEecCCccHHHHHHHHHcCCceEEecCCCC
Confidence 4899999999999999998888888888888888876 79999999999998887778889999998875432
Q ss_pred ------CCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCccccccc---CC-CCcc
Q psy7357 115 ------GTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGL---CR-PGDY 184 (302)
Q Consensus 115 ------g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~---~~-p~~~ 184 (302)
|.|+.+.+++.+.++++.-++++++||+++|+.- |+++|.+.++..++++.+|.+++.-.... .. ..+.
T Consensus 143 p~~gi~ggI~~~~~~~~l~~~~~~~k~~vitnpTYdGv~~-n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~~~~~~ 221 (557)
T COG1982 143 PLYGIIGGIPLETFKEALLAHPDAEKLAVITNPTYDGVCY-NLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPESALNG 221 (557)
T ss_pred ccccccCCCCHHHHHHHHHhChhhheeEEEecCccceEee-cHHHHHHHHhhcCceEEhhhcCcccccccccCcchhhhc
Confidence 5799999999997663333899999999999998 89999999999999999999986433221 11 1236
Q ss_pred CCcEEEeCCCcccCCCCCCCCCcceeEEEeCC
Q psy7357 185 GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSH 216 (302)
Q Consensus 185 gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~ 216 (302)
++|+++-|.||+++. .-...+|-++..
T Consensus 222 ~~~~~tqS~HK~l~a-----lSQaS~iHv~~~ 248 (557)
T COG1982 222 GADFVTQSTHKLLAA-----LSQASMIHVKDG 248 (557)
T ss_pred CceEEEechhhhhhh-----hhhhHHHhhCCC
Confidence 899999999999872 235566666643
No 250
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=99.53 E-value=3.6e-13 Score=128.63 Aligned_cols=228 Identities=16% Similarity=0.186 Sum_probs=141.0
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCccc-HHHHHhCCCEEEEeec-
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTN-PASAQMAGMSVEPVSV- 111 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~-~~~~~~~g~~v~~i~~- 111 (302)
..+.++++.+++++|.+.+ +.+.+|+.|+.. +.++. -++||+| +...|-.. .......|...+.+..
T Consensus 78 ~s~~~LE~~vAe~lG~e~a-V~v~sGTaAl~l-l~~l~-------v~pGd~V--p~n~~f~Tt~ahI~~~Ga~fvDi~~d 146 (460)
T PRK13237 78 RNFYHLEETVQEYYGFKHV-VPTHQGRGAENL-LSRIA-------IKPGQYV--PGNMYFTTTRYHQELNGGIFVDIIID 146 (460)
T ss_pred CcHHHHHHHHHHHHCCCeE-EEeCCHHHHHHH-HHHhC-------CCCcCEE--CCccchHhhHHHHHhCCcEEEeeecc
Confidence 3467999999999999984 456788877633 22221 2578864 44444333 3335667776555531
Q ss_pred ---------CCCCCCCHHHHHHHHhcc-CCCeEEEEEecC-CCc-eecc--ccHHHHHHHHHHhCCEEEEecCCccccc-
Q psy7357 112 ---------RKDGTIDFSDLETKVKKN-KETLSCLMITYP-STF-GVFE--ENITDVCELIHEHGGQVYLDGANMNAQV- 176 (302)
Q Consensus 112 ---------~~~g~iD~~~l~~~i~~~-~~~t~~V~i~~P-n~~-G~~~--~di~~I~~ia~~~g~llivD~a~~~~~~- 176 (302)
..+|.+|+++|+++|+++ .++++.|.+.++ |.. |... .++++|.++|+++|+.+|.|+|+...-.
T Consensus 147 ~a~~~~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra~gna~ 226 (460)
T PRK13237 147 EAHDAQSDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRCVENAY 226 (460)
T ss_pred cccccccCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcchhcChh
Confidence 136899999999999853 234444555544 455 4431 2799999999999999999999864411
Q ss_pred -------cc--CCCC------ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeC-CCCCCCCCCcc---cC-CCCcc-h-
Q psy7357 177 -------GL--CRPG------DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKS-HLAPFLPVHPL---SS-IDSSI-G- 234 (302)
Q Consensus 177 -------~~--~~p~------~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~-~l~~~lpg~~~---~~-~~~~l-~- 234 (302)
+. .+.+ --.+|++++|+||++..+ -+|++++++ ++.+++....+ |- ++.++ +
T Consensus 227 fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~------~GG~i~t~D~eL~~~~r~~~~~~eG~~tygg~~gr 300 (460)
T PRK13237 227 FIKEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVN------IGGFLAMNDEELFDEAKELVVVYEGMPSYGGMAGR 300 (460)
T ss_pred hhcccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCC------CceEEEECCHHHHHHHHHhccccCCCcCCCChhhh
Confidence 11 1111 124799999999988753 458999984 66666654422 11 44444 2
Q ss_pred hhhHHHHhhHh-hHHHHH--------HHHH-HHh-cccccccccCCCcceeEEEEEEeccc
Q psy7357 235 AVSAAHYGSAS-ILPISW--------AYIR-RLE-SHYKTLFRSSRSGLVAHEFVIDVRDF 284 (302)
Q Consensus 235 ~~~a~~~~~~~-~~~~~~--------~y~~-~l~-~g~~~~~~~~~~~~~~he~~~~~~~~ 284 (302)
.+.| ....+. .....| .|+. +|. .|++++.+ +. -|.+.||...+
T Consensus 301 d~~a-lAvgl~E~~~~~y~~~ri~~~~~l~~~L~~~Gvpv~~p-~g----gH~v~vda~~~ 355 (460)
T PRK13237 301 DMEA-MAIGIEESVQYEYIEHRVGQVRYLGEKLLAAGVPIVEP-VG----GHAVFLDARRF 355 (460)
T ss_pred HHHH-HHhHHHhhchHHHHHHHHHHHHHHHHHHHHCCCceecC-CC----ceEEEEEhHHh
Confidence 2332 222221 111111 3444 676 69999763 44 69999997654
No 251
>PRK10534 L-threonine aldolase; Provisional
Probab=99.53 E-value=1.4e-13 Score=127.86 Aligned_cols=172 Identities=18% Similarity=0.248 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcc-cHHH-HHhC-CCEEEEee
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGT-NPAS-AQMA-GMSVEPVS 110 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~-~~~~-~~~~-g~~v~~i~ 110 (302)
....++++.+++++|.+.+. ...+|+.++...+.++. .++|+|+++.+.|.. +... +... +.+++.++
T Consensus 34 ~~~~~L~~~la~~~g~~~~~-v~~~g~~a~~~~l~~~~--------~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (333)
T PRK10534 34 PTVNALQDYAAELSGKEAAL-FLPTGTQANLVALLSHC--------ERGEEYIVGQAAHNYLYEAGGAAVLGSIQPQPID 104 (333)
T ss_pred HHHHHHHHHHHHHhCCCeEE-EeCchHHHHHHHHHHhc--------CCCCeeEEechhhhhHhcCCchHHhcCceEEeec
Confidence 35678899999999998875 44556666644444432 578998988776642 2111 2233 37888888
Q ss_pred cCCCCCCCHHHHHHHHhccC---CCeEEEEEecCCCceecc--ccHHHHHHHHHHhCCEEEEecCCccccc-cc-CCCC-
Q psy7357 111 VRKDGTIDFSDLETKVKKNK---ETLSCLMITYPSTFGVFE--ENITDVCELIHEHGGQVYLDGANMNAQV-GL-CRPG- 182 (302)
Q Consensus 111 ~~~~g~iD~~~l~~~i~~~~---~~t~~V~i~~Pn~~G~~~--~di~~I~~ia~~~g~llivD~a~~~~~~-~~-~~p~- 182 (302)
.++++.+|+++|+++++++. +++++|+++||++ |.+. +++++|.++|+++|+++++|+++..... .. ....
T Consensus 105 ~~~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~~-G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~~ 183 (333)
T PRK10534 105 AAADGTLPLDKVAAKIKPDDIHFARTRLLSLENTHN-GKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYGCELKE 183 (333)
T ss_pred CCCCCCCCHHHHHHhhcccCcCcccceEEEEecCCC-CeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHHH
Confidence 87788999999999996210 1688999999874 8874 1456667888999999999997542110 00 0110
Q ss_pred -ccCCcEEEeCCCcccCCCCCCCCCcce-eEEEeCCCCCCCC
Q psy7357 183 -DYGSDVSHLNLHKTFCIPHGGGGPGMG-PIGVKSHLAPFLP 222 (302)
Q Consensus 183 -~~gaDiv~~~~hK~l~~p~~~gGp~~G-~l~~~~~l~~~lp 222 (302)
....|.++.+++|.++. + +| +++.++++++.+.
T Consensus 184 ~~~~~~~~~~s~SK~~~~------~-~G~~~~~~~~~i~~~~ 218 (333)
T PRK10534 184 ITQYCDSFTICLSKGLGT------P-VGSLLVGNRDYIKRAR 218 (333)
T ss_pred HHhcCCEEEEEeEcCCCC------c-ccceEEcCHHHHHHHH
Confidence 11346555566776653 3 45 6777887776664
No 252
>PRK14809 histidinol-phosphate aminotransferase; Provisional
Probab=99.53 E-value=7.9e-14 Score=130.91 Aligned_cols=168 Identities=15% Similarity=0.067 Sum_probs=115.5
Q ss_pred HHHHHHHHHHhCCCeeeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCC--
Q psy7357 37 GELETDLCEITGYDKISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRK-- 113 (302)
Q Consensus 37 ~e~~~~l~~l~g~~~~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~-- 113 (302)
.++++.+++.++++..++..++|++ +...+ ++.+. ++||.|++++|.|+.+...+...|.+++.+|++.
T Consensus 68 ~~lr~~ia~~~~~~~~~I~it~G~~~al~~~---~~~~~-----~~gd~V~v~~P~y~~~~~~~~~~g~~~~~~~l~~~~ 139 (357)
T PRK14809 68 ADLTAALADRWDVSPEQVWLANGGDGALDYL---ARAML-----DPGDTVLVPDPGFAYYGMSARYHHGEVREYPVSKAD 139 (357)
T ss_pred HHHHHHHHHHhCCCcceEEECCCHHHHHHHH---HHHhc-----CCCCEEEEeCCChHHHHHHHHHcCCeEEEEecccCc
Confidence 4677888888899888888888874 33222 23222 6899999999998777777788899999999864
Q ss_pred CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHh--CCEEEEecCCcccccccCCC--C-ccCCc
Q psy7357 114 DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEH--GGQVYLDGANMNAQVGLCRP--G-DYGSD 187 (302)
Q Consensus 114 ~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~--g~llivD~a~~~~~~~~~~p--~-~~gaD 187 (302)
+..+|++++++.. +++++|+++|| |+||..- +.+++.++++.. +.++|+|.++.. +..-.++ . +..-+
T Consensus 140 ~~~~~~~~~~~~~----~~~k~i~l~~p~NPTG~~~-s~~~~~~l~~~~~~~~~iI~De~y~~-~~~~~~~~~~~~~~~~ 213 (357)
T PRK14809 140 DFEQTADTVLDAY----DGERIVYLTSPHNPTGSEI-PLDEVEALAERTDEETLVVVDEAYGE-FAERPSAVALVEERDD 213 (357)
T ss_pred CCCcCHHHHHHhh----cCCcEEEEeCCCCCCCcCC-CHHHHHHHHHhCccCcEEEEechhhh-ccCCchhHHHHhhCCC
Confidence 2467888777764 35688999999 5999986 466666665543 789999998631 1100010 0 11113
Q ss_pred -EEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 188 -VSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 188 -iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+++.+..|+|+.| |.|+|++++++++++++.
T Consensus 214 vi~~~SfSK~~~~~----GlRiG~~~~~~~~~~~~~ 245 (357)
T PRK14809 214 VAVLRTFSKAYGLA----GLRLGYAVVPEEWADAYA 245 (357)
T ss_pred EEEEecchhHhcCc----chhheeeecCHHHHHHHH
Confidence 4455566766654 899999999987766654
No 253
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=99.53 E-value=4.7e-13 Score=132.80 Aligned_cols=183 Identities=19% Similarity=0.237 Sum_probs=134.2
Q ss_pred cccccHHHHHHHHHHHHHHHhCCCee-eEeeCchHHHHHHHHHHHHHHHH-----hhcC---------------------
Q psy7357 27 DQARGYEQLIGELETDLCEITGYDKI-SFQPNSGAQGEYAGLRAIQCYHQ-----AQDA--------------------- 79 (302)
Q Consensus 27 e~sqG~l~~~~e~~~~l~~l~g~~~~-~~~~~~Ga~a~~a~l~a~~~~~~-----~~g~--------------------- 79 (302)
|.|.++.++-.++-+++|+++|.+.. -.++.+|+.|++.++.+.|.... ....
T Consensus 116 e~SP~~t~lE~~vi~~la~l~G~~~~~G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~ 195 (608)
T TIGR03811 116 ESSPATSQMEEEVGKEFATLMGYKNGWGHIVADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMPTKEIM 195 (608)
T ss_pred ccCchHHHHHHHHHHHHHHHhCCCCCCeEEeCChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhccccccccc
Confidence 67888989999999999999998753 34567788888777777764310 0000
Q ss_pred ------------------------CCCCEEEEcCCCCcccHHHHHhCCC---EEEEeecCCCCCCCHHHHHHHHhcc---
Q psy7357 80 ------------------------HHRNVCLIPVSAHGTNPASAQMAGM---SVEPVSVRKDGTIDFSDLETKVKKN--- 129 (302)
Q Consensus 80 ------------------------~~~d~Vlv~~~~hg~~~~~~~~~g~---~v~~i~~~~~g~iD~~~l~~~i~~~--- 129 (302)
.+..++++|...|.+....+...|+ .++.||+|+++++|+++|++.|++.
T Consensus 196 ~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~~~~~~ 275 (608)
T TIGR03811 196 DLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADIIGIGLDQVIPVPVDSNYRMDINELEKIIRKLAAE 275 (608)
T ss_pred ccccccccchhhhhhhccccccccccceEEEECCCccHHHHHHHHHcCCCcccEEEeecCCCCcCCHHHHHHHHHHHHhc
Confidence 0001689999899888888888888 5999999999999999999999642
Q ss_pred CCCeEEEEEecCC-CceeccccHHHHHHHH---HHhCC--EEEEecCCcccc-cccCC----------------------
Q psy7357 130 KETLSCLMITYPS-TFGVFEENITDVCELI---HEHGG--QVYLDGANMNAQ-VGLCR---------------------- 180 (302)
Q Consensus 130 ~~~t~~V~i~~Pn-~~G~~~~di~~I~~ia---~~~g~--llivD~a~~~~~-~~~~~---------------------- 180 (302)
+..+.+|+.+-++ .+|.++ |+++|+++| +++|+ ++|||+|..-.. ..+.+
T Consensus 276 g~p~~~VVataGTT~~GaiD-pl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~ 354 (608)
T TIGR03811 276 KTPILGVVGVVGSTEEGAVD-GIDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFT 354 (608)
T ss_pred CCCeEEEEEEcCCcCCcccC-CHHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhcccccccccc
Confidence 2235566666554 789999 799999999 66887 699999863211 11111
Q ss_pred -------C-------CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeC
Q psy7357 181 -------P-------GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKS 215 (302)
Q Consensus 181 -------p-------~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~ 215 (302)
+ +-..+|-++.+.||++..|+ ..|.+++|+
T Consensus 355 ~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~~Py-----~~G~ll~Rd 398 (608)
T TIGR03811 355 EKKEYISREVYNAYKAISEAESVTIDPHKMGYIPY-----SAGGIVIQD 398 (608)
T ss_pred cccccccHhHHHHHhcCcCceEEEeCcccccccCC-----CeEEEEEeC
Confidence 0 12468999999999999885 456777774
No 254
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=99.52 E-value=1.9e-13 Score=136.86 Aligned_cols=152 Identities=14% Similarity=0.076 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCC
Q psy7357 35 LIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKD 114 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~ 114 (302)
.+.|.|+.++++||++.+.+.++++|.++.++++++. ++||+||+++..|-+....+.+.|+++++++...+
T Consensus 196 ~i~eAe~~AA~~fgAd~tyfvvNGTS~~n~av~~a~~--------~~Gd~VLvdRN~HKSv~haLilsga~PVYl~P~rn 267 (714)
T PRK15400 196 PHKEAEEYIARVFNADRSYMVTNGTSTANKIVGMYSA--------PAGSTVLIDRNCHKSLTHLMMMSDVTPIYFRPTRN 267 (714)
T ss_pred HHHHHHHHHHHHhCCCcEEEEeCchHHHHHHHHHHhc--------CCCCEEEeecccHHHHHHHHHHcCCeEEEeccccc
Confidence 5899999999999999988877777788878877765 78999999999998877778899999999976532
Q ss_pred -----CCCC-----HHHHHHHHhccCCCeE---EEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCccc--ccc-c
Q psy7357 115 -----GTID-----FSDLETKVKKNKETLS---CLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNA--QVG-L 178 (302)
Q Consensus 115 -----g~iD-----~~~l~~~i~~~~~~t~---~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~--~~~-~ 178 (302)
|.++ .+.|++.|++++ +.+ ++++++|++.|++- |+++|.+++|.++ +++|+|+... +.. +
T Consensus 268 ~~Gi~g~I~~~~~~~e~i~~~i~~~p-~ak~p~~~vit~pTYdG~~y-d~~~I~~~~~~~~--ilvDEAwgah~~F~p~~ 343 (714)
T PRK15400 268 AYGILGGIPQSEFQHATIAKRVKETP-NATWPVHAVITNSTYDGLLY-NTDFIKKTLDVKS--IHFDSAWVPYTNFSPIY 343 (714)
T ss_pred ccCCccCCCccccCHHHHHHHHHhCc-cccCccEEEEECCCCccEec-CHHHHHHHhCCCC--EEEEccchhhhccCccc
Confidence 3456 899999998763 333 79999999999999 8999999999888 4689986321 111 1
Q ss_pred --CCCCccCC---c--EEEeCCCcccC
Q psy7357 179 --CRPGDYGS---D--VSHLNLHKTFC 198 (302)
Q Consensus 179 --~~p~~~ga---D--iv~~~~hK~l~ 198 (302)
..+-..|+ | +++.|+||+|+
T Consensus 344 ~~~sam~~ga~~~~~i~vtQStHKtL~ 370 (714)
T PRK15400 344 EGKCGMSGGRVEGKVIYETQSTHKLLA 370 (714)
T ss_pred CCcChhhcCCCCCCceEEEEchhhccc
Confidence 12223455 5 99999999997
No 255
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=99.52 E-value=5.7e-13 Score=124.49 Aligned_cols=160 Identities=18% Similarity=0.163 Sum_probs=105.8
Q ss_pred HHHHHHHHHHhCCCe-eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCC
Q psy7357 37 GELETDLCEITGYDK-ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDG 115 (302)
Q Consensus 37 ~e~~~~l~~l~g~~~-~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g 115 (302)
.++++.+++.+|++. .++..++|++.....+.. .+ ++++ |++++|.|+.+...++..|.+++.+|.++
T Consensus 56 ~~L~~~ia~~~~~~~~~~I~i~~Gs~e~i~~l~~---~~-----~~g~-v~v~~P~y~~y~~~~~~~g~~~~~v~~~~-- 124 (339)
T PRK06959 56 DGLAACAARYYGAPDAAHVLPVAGSQAAIRALPA---LL-----PRGR-VGIAPLAYSEYAPAFARHGHRVVPLDEAA-- 124 (339)
T ss_pred HHHHHHHHHHhCCCCcccEEECcCHHHHHHHHHH---hc-----CCCe-EEEcCCCcHHHHHHHHHCCCEEEeecccc--
Confidence 689999999999974 678888888532222221 11 4555 78899998888888899999999888643
Q ss_pred CCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc--cHHHHHHHHHHhCCEEEEecCCcccc--cccCCCCccCCc-EE
Q psy7357 116 TIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE--NITDVCELIHEHGGQVYLDGANMNAQ--VGLCRPGDYGSD-VS 189 (302)
Q Consensus 116 ~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~--di~~I~~ia~~~g~llivD~a~~~~~--~~~~~p~~~gaD-iv 189 (302)
+ .+. +.++.++++|| ||||.+-+ +++++++.+.+++.++|+|.++.--. ..+....+ ..+ ++
T Consensus 125 ----~----~~~---~~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~~s~~~~~~-~~~vi~ 192 (339)
T PRK06959 125 ----D----TLP---AALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPAASLAAHTD-RPGLVV 192 (339)
T ss_pred ----h----hcc---ccCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCcccchhccC-CCCEEE
Confidence 1 222 34567999999 59998741 34555555667899999999863111 01111011 123 44
Q ss_pred EeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 190 HLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 190 ~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
+.+..|.| ++.|.|+||+++++++++.+..
T Consensus 193 l~SfSK~~----gl~GlRiGy~v~~~~li~~l~~ 222 (339)
T PRK06959 193 LRSVGKFF----GLAGVRAGFVLAAPALLAALRD 222 (339)
T ss_pred EecChhhc----CCcchheEEEecCHHHHHHHHH
Confidence 44445554 4559999999999887766543
No 256
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=99.51 E-value=2.9e-13 Score=129.37 Aligned_cols=171 Identities=22% Similarity=0.261 Sum_probs=122.5
Q ss_pred cHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEee
Q psy7357 31 GYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVS 110 (302)
Q Consensus 31 G~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~ 110 (302)
|..+...++++.+++++|.+.+ +..++|++|+++++.++.. ..+++.|+..+..|++.....+..|.+++.++
T Consensus 87 ~~~~~~~~le~~la~~~g~~~~-~~~~SG~~An~~ai~~l~~------~~~g~~I~~~~~~H~s~~~~~~~~g~~~~~~~ 159 (406)
T PRK13393 87 GTNHYHVLLEAELADLHGKEAA-LLFTSGYVSNWAALSTLGS------RLPGCVILSDELNHASMIEGIRHSRAEKRIFR 159 (406)
T ss_pred CChHHHHHHHHHHHHHhCCCcE-EEeCCcHHHHHHHHHHhhc------CCCCCEEEEccchhHHHHHHHHHcCCeEEEeC
Confidence 4456789999999999998654 5667888777666654431 02567777777888877766677788887776
Q ss_pred cCCCCCCCHHHHHHHHhccC-CCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccc-c-----CCCC
Q psy7357 111 VRKDGTIDFSDLETKVKKNK-ETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVG-L-----CRPG 182 (302)
Q Consensus 111 ~~~~g~iD~~~l~~~i~~~~-~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~-~-----~~p~ 182 (302)
. .|++++++.++... +++++|+++++ |++|.+. |+++|.++|+++|+++++|++|..+..+ . ..++
T Consensus 160 ~-----~d~~~l~~~l~~~~~~~~~~v~~~~v~~~~G~~~-~l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~ 233 (406)
T PRK13393 160 H-----NDPADLERKLSDLDPHRPKLVAFESVYSMDGDIA-PIAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREG 233 (406)
T ss_pred C-----CCHHHHHHHHHhccCCCCEEEEEcCCCCCCCchh-CHHHHHHHHHHcCCEEEEECCccccccCCCCCchhhhcC
Confidence 4 47888888886432 36788889887 5889999 7999999999999999999998644421 1 0111
Q ss_pred -ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 183 -DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 183 -~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
....|+++.+..|.|+. +| |++++++++.+.+
T Consensus 234 ~~~~~~i~~~tlsKa~g~------~G-G~~~~~~~~~~~l 266 (406)
T PRK13393 234 LADRLTIIEGTLAKAFGV------MG-GYITGSAALCDFI 266 (406)
T ss_pred CCCCCeEEEEeCchhhcc------cC-ceeeCCHHHHHHH
Confidence 11258888777887763 22 7888776655443
No 257
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=99.51 E-value=1.5e-13 Score=129.22 Aligned_cols=170 Identities=18% Similarity=0.161 Sum_probs=115.4
Q ss_pred cccHHHHHHHHHHHHHHHhCCC---eeeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYD---KISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~---~~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~ 104 (302)
.+|..++++++.+.+.+..|.+ ..++..++|++ +... +++.+. .++||.|+++++.|+.+...++..|.
T Consensus 55 ~~G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i~~---~~~~l~----~~~gd~Vl~~~p~y~~~~~~~~~~g~ 127 (357)
T TIGR03539 55 TWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAW---LPTLLG----LGPGDTVVIPELAYPTYEVGALLAGA 127 (357)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHHHH---HHHHHc----CCCCCEEEECCCCcHHHHHHHHhcCC
Confidence 5788888888888888776654 45777778874 3322 222110 15899999999999888777788899
Q ss_pred EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcc-cccc--c
Q psy7357 105 SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMN-AQVG--L 178 (302)
Q Consensus 105 ~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~-~~~~--~ 178 (302)
+++.++ |+++++ . +++++|++++| |++|..- +++++|.++|+++|+++|+|.++.. .... .
T Consensus 128 ~~~~v~-------~~~~l~---~---~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~ 194 (357)
T TIGR03539 128 TPVAAD-------DPTELD---P---VGPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRPV 194 (357)
T ss_pred EEeccC-------ChhhcC---c---cCccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCc
Confidence 888764 233222 2 57889999999 5999863 1578899999999999999998631 1111 0
Q ss_pred --CCC----CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 179 --CRP----GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 179 --~~p----~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
..+ +...--+++.+.+|.|+. .|.|+|++++++++++.+.
T Consensus 195 ~~~~~~~~~~~~~~vi~~~S~SK~~~~----~G~R~G~~i~~~~~~~~~~ 240 (357)
T TIGR03539 195 SILDPRVCGGDHTGLLAVHSLSKRSNL----AGYRAGFVAGDPALVAELL 240 (357)
T ss_pred cceecccCCCccccEEEEeccccccCC----CceeEEEEecCHHHHHHHH
Confidence 011 111113666666776654 4899999998877766553
No 258
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=99.51 E-value=1.8e-13 Score=127.32 Aligned_cols=158 Identities=16% Similarity=0.182 Sum_probs=109.7
Q ss_pred HHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCCC
Q psy7357 37 GELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGT 116 (302)
Q Consensus 37 ~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g~ 116 (302)
.++++.+++.+|.+ ++..++|++..+.. .++ . .++|+|++++|.|+.+...++..|++++.+|.+
T Consensus 52 ~~Lr~~ia~~~~~~--~I~it~Gs~~al~~--~~~-~------~~gd~v~v~~P~y~~~~~~~~~~g~~~~~v~~~---- 116 (330)
T PRK05664 52 DGLEAAARAYYGAP--QLLPVAGSQAAIQA--LPR-L------RAPGRVGVLSPCYAEHAHAWRRAGHQVRELDEA---- 116 (330)
T ss_pred HHHHHHHHHHhCCC--CEEECcCHHHHHHH--HHH-c------cCCCEEEEcCCChHHHHHHHHHcCCeEEEechh----
Confidence 67889999999975 56677787422121 222 1 578999999999988888899999999999863
Q ss_pred CCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcccc--cccCCCCccCCc-EEE
Q psy7357 117 IDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMNAQ--VGLCRPGDYGSD-VSH 190 (302)
Q Consensus 117 iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~~~--~~~~~p~~~gaD-iv~ 190 (302)
++++.++ ++++++++|| ||||.+- .++++|.++|+++|+++|+|.++.-.. ..+..... ..+ +++
T Consensus 117 ----~~~~~~~----~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~s~~~~~~-~~~vi~~ 187 (330)
T PRK05664 117 ----EVEAALD----SLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNTPQHSLAACAH-RPGLIVL 187 (330)
T ss_pred ----hHhhhhc----CCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCCCccccccccc-CCCEEEE
Confidence 4555554 5667899999 5999873 157777778889999999999863111 01111111 123 455
Q ss_pred eCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 191 LNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 191 ~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
.+.+|+|+ +.|.|+||+++++++++.+.
T Consensus 188 ~SfSK~~g----l~GlRiG~~v~~~~l~~~~~ 215 (330)
T PRK05664 188 RSFGKFFG----LAGARLGFVLAEPALLRALA 215 (330)
T ss_pred eecccccc----CCCcceEEEEeCHHHHHHHH
Confidence 55556555 44999999999887766654
No 259
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=99.50 E-value=4e-13 Score=122.83 Aligned_cols=230 Identities=17% Similarity=0.164 Sum_probs=145.1
Q ss_pred ccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH--HHH-hCCCEE
Q psy7357 30 RGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA--SAQ-MAGMSV 106 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~--~~~-~~g~~v 106 (302)
-|..+...++++++++++|. .+.++..+|++++..++.+.. +++..|++.+..|-.... ..+ ..+...
T Consensus 31 YG~D~~~~~~e~~~ae~~g~-~a~~Fv~sGT~aN~lal~~~~--------~~~~~vi~~~~aHi~~~E~Ga~~~~~~~~~ 101 (342)
T COG2008 31 YGEDPTTNALEQRIAELFGK-EAALFVPSGTQANQLALAAHC--------QPGESVICHETAHIYTDECGAPEFFGGGQK 101 (342)
T ss_pred CCCCHHHHHHHHHHHHHhCC-ceEEEecCccHHHHHHHHHhc--------CCCCeEEEeccccceecccCcHHHHcCCce
Confidence 36678999999999999999 555667789988866655543 678888998888864432 222 333333
Q ss_pred EEeecCCCCCCCHHHHHHHHhc----cCCCeEEEEEecCCCceecc--ccHHHHHHHHHHhCCEEEEecCCcc-cccccC
Q psy7357 107 EPVSVRKDGTIDFSDLETKVKK----NKETLSCLMITYPSTFGVFE--ENITDVCELIHEHGGQVYLDGANMN-AQVGLC 179 (302)
Q Consensus 107 ~~i~~~~~g~iD~~~l~~~i~~----~~~~t~~V~i~~Pn~~G~~~--~di~~I~~ia~~~g~llivD~a~~~-~~~~~~ 179 (302)
..+.-.++|.+++++|++.+.. |.+...++.+++++..|.+- +.+++|.++||++|+.+++|+|-.+ +...+.
T Consensus 102 ~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg 181 (342)
T COG2008 102 LPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVALG 181 (342)
T ss_pred eccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcC
Confidence 3333346899999999998863 22334445555567778762 1589999999999999999998642 222222
Q ss_pred CC-C--ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC------CCCcccCCCCcchhhhHHHHhhHh--hHH
Q psy7357 180 RP-G--DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL------PVHPLSSIDSSIGAVSAAHYGSAS--ILP 248 (302)
Q Consensus 180 ~p-~--~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l------pg~~~~~~~~~l~~~~a~~~~~~~--~~~ 248 (302)
.+ . ..++|++++.+.|.++ .|...+++.+.++++++ -|..+- ...-++|.+-..+. ++.
T Consensus 182 ~~~~~~~~~~D~v~~~~tK~g~------~~~gAiv~gn~~~~~~a~~~rK~~Ggl~~----k~r~laA~~~~~l~~~~~~ 251 (342)
T COG2008 182 VALKTIKSYVDSVSFCLTKGGG------APVGAIVFGNRDFAKRARRWRKRAGGLMR----KARFLAAQGLYALEDDVWR 251 (342)
T ss_pred CCHHHHHhhCCEEEEecccCCc------ceeeeEEEcCHHHHHHHHHHHHHhcccHh----hhhHHHHHHHHHHhccHHH
Confidence 11 1 2378999998888554 45667777777665544 333321 11223322222221 211
Q ss_pred -HHH-HH--HHHHh------cccccccccCCCcceeEEEEEEecc
Q psy7357 249 -ISW-AY--IRRLE------SHYKTLFRSSRSGLVAHEFVIDVRD 283 (302)
Q Consensus 249 -~~~-~y--~~~l~------~g~~~~~~~~~~~~~~he~~~~~~~ 283 (302)
.+. .. +++|. .|+++.++ +. .|++-+++++
T Consensus 252 ~~~~Han~mA~~La~~~~~~~G~~~~~~-~~----tN~vf~~l~~ 291 (342)
T COG2008 252 LAADHANAMAARLAEGLEAKPGVKLAFP-VE----TNMVFVRLPE 291 (342)
T ss_pred HHHHHHHHHHHHHHHhhhhcCCceeccC-Cc----ccEEEEECCh
Confidence 111 22 33333 37888775 55 8999999884
No 260
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=99.49 E-value=7.8e-12 Score=116.61 Aligned_cols=170 Identities=25% Similarity=0.350 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHhC-CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHH-------hCCC-
Q psy7357 34 QLIGELETDLCEITG-YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQ-------MAGM- 104 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g-~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~-------~~g~- 104 (302)
+...++.+.|+++++ ++. .++.+||++|+++++...|.|.. +.++...|-..+..||-.....+ ..++
T Consensus 84 ~~~~~la~~L~~~s~~~d~-vff~NSGaEA~EaAiKlARk~~~--~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~ 160 (404)
T COG4992 84 EPQAELAEKLVELSPFADR-VFFCNSGAEANEAALKLARKYTG--DPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFG 160 (404)
T ss_pred hHHHHHHHHHHhhCccccE-EEEcCCcHHHHHHHHHHHHHHcC--CCCCcEEEEEcCCcCCccceeeeccCChhhccCCC
Confidence 456788889999997 555 46789999999999999998742 11233344444567776544322 1122
Q ss_pred ----EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc---cHHHHHHHHHHhCCEEEEecCCccccc
Q psy7357 105 ----SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE---NITDVCELIHEHGGQVYLDGANMNAQV 176 (302)
Q Consensus 105 ----~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~---di~~I~~ia~~~g~llivD~a~~~~~~ 176 (302)
.+..+|+ -|+++++++|+ ++|++|++.-- ...|++.+ -+++++++|++||+++|+|++|. ++
T Consensus 161 Pl~~g~~~vpf-----nDi~al~~ai~---~~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQt-G~- 230 (404)
T COG4992 161 PLLPGFRHVPF-----NDIEALEAAID---EDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQT-GL- 230 (404)
T ss_pred CCCCCceecCC-----CCHHHHHHHhc---cCeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEecccc-CC-
Confidence 2334444 49999999999 79999999862 46787743 48999999999999999999873 22
Q ss_pred ccCCCCcc--------CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC-CCCc
Q psy7357 177 GLCRPGDY--------GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL-PVHP 225 (302)
Q Consensus 177 ~~~~p~~~--------gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l-pg~~ 225 (302)
.+.|++ .+||++. .|.|+ ||-.+|.+++++.+.+.+ ||..
T Consensus 231 --GRTGk~fA~e~~gV~PDI~tl--aK~Lg-----GG~PigA~la~~~~~~~~~~G~H 279 (404)
T COG4992 231 --GRTGKLFAYEHYGVEPDILTL--AKALG-----GGFPIGAMLATEEIASAFTPGDH 279 (404)
T ss_pred --CccchHHHHHHhCCCCCEEEe--ecccc-----CCccceeeEEchhhhhcCCCCcc
Confidence 233332 3699998 58886 467788888886656544 4443
No 261
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=99.49 E-value=4.8e-13 Score=127.71 Aligned_cols=171 Identities=17% Similarity=0.208 Sum_probs=114.1
Q ss_pred cccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCC----
Q psy7357 29 ARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGM---- 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~---- 104 (302)
.+|..++++++.+.+.+ .+++..++..++|++..+..+..+ + .++|+|++++|.|+.+...++..|.
T Consensus 74 ~~g~~~lr~aia~~~~~-~~~~~d~I~it~Ga~~al~~l~~l---~-----~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~ 144 (402)
T TIGR03542 74 EQGYPFLREAIAENDYR-GRIDPEEIFISDGAKCDVFRLQSL---F-----GSDNTVAVQDPVYPAYVDSNVMAGRAGVL 144 (402)
T ss_pred CCCCHHHHHHHHHHHHh-cCCCHHHEEECCCcHHHHHHHHHh---c-----CCCCEEEEeCCCCcchHHHHHHcCCcccc
Confidence 46776766666665432 156667788888875322222222 1 5789999999999988888888999
Q ss_pred -------EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcc-
Q psy7357 105 -------SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMN- 173 (302)
Q Consensus 105 -------~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~- 173 (302)
+++.+|.++++..+++ +++ . +++++|+++|| ||||..- .++++|.++|+++|+++|+|.++.-
T Consensus 145 ~~~~~~~~~~~v~~~~~~~~~~~-~~~--~---~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~ 218 (402)
T TIGR03542 145 DDDGRYSKITYLPCTKENNFIPD-LPE--E---PKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAF 218 (402)
T ss_pred ccccccceEEEeecchhhCCCCC-ccc--c---CCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhh
Confidence 9999998653322222 111 1 57899999999 5999873 2589999999999999999998631
Q ss_pred cccc-cCCC-Ccc----CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCC
Q psy7357 174 AQVG-LCRP-GDY----GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLA 218 (302)
Q Consensus 174 ~~~~-~~~p-~~~----gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~ 218 (302)
.... ...+ ... .--|++.|..|.|+.| |.|+|+++++++++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~p----GlRiG~~i~~~~l~ 265 (402)
T TIGR03542 219 ISDPSLPHSIFEIPGAKECAIEFRSFSKTAGFT----GVRLGWTVVPKELT 265 (402)
T ss_pred ccCCCCCcchhhCCCCcccEEEEecCccccCCC----CcceEEEEecHHHh
Confidence 1111 1111 011 1124466667777655 89999999987765
No 262
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=99.49 E-value=1.1e-11 Score=118.20 Aligned_cols=173 Identities=14% Similarity=0.211 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHh-hcC-CCCCEEEEc-CCCCcccHHHHHhCCC------
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQA-QDA-HHRNVCLIP-VSAHGTNPASAQMAGM------ 104 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~-~g~-~~~d~Vlv~-~~~hg~~~~~~~~~g~------ 104 (302)
+...++.++++++++.+.+ +..+||++|+++++..++.+... .|. ..+++|+.. ...||.........+-
T Consensus 82 ~~~~~l~~~l~~~~~~~~~-~~~~SGseA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~ 160 (396)
T PRK04073 82 DQLGPWYEKVAKLTGKDMV-LPMNTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRG 160 (396)
T ss_pred HHHHHHHHHHHhcCCCCeE-EEcCChHHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccC
Confidence 4456788899998887654 56789999988888888766321 121 123555555 4578877554432221
Q ss_pred ------EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecccc---HHHHHHHHHHhCCEEEEecCCccc
Q psy7357 105 ------SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEEN---ITDVCELIHEHGGQVYLDGANMNA 174 (302)
Q Consensus 105 ------~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~d---i~~I~~ia~~~g~llivD~a~~~~ 174 (302)
.+..+|. -|++++++.++ +++++|+++.| |++|.+.++ +++|.++|+++|+++|+|+++. +
T Consensus 161 ~~~~~~~~~~~~~-----~d~~~l~~~i~---~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~-g 231 (396)
T PRK04073 161 FGPMLPGIKKIPY-----GDLEALKAAIT---PNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQT-G 231 (396)
T ss_pred CCCCCCCceEeCC-----CCHHHHHHhcc---cCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchh-C
Confidence 1223332 28899999997 78888888887 688987532 8999999999999999999874 2
Q ss_pred ccc----c-CCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 175 QVG----L-CRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 175 ~~~----~-~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
++. . .......+|++++ +|+++ +||.++|++++++++++.+.
T Consensus 232 ~g~~g~~~~~~~~~~~pdi~~~--sK~lg----~gg~~ig~~~~~~~i~~~~~ 278 (396)
T PRK04073 232 LGRTGKLFACDWDNVTPDMYIL--GKALG----GGVFPISCVAANRDILGVFT 278 (396)
T ss_pred CCcCcHHHHhhhcCCCCCEEEe--ccccc----CCCCcceEEEEcHHHHhhhc
Confidence 221 0 0111234688876 47664 56788999999988777663
No 263
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=99.48 E-value=7.2e-13 Score=124.47 Aligned_cols=169 Identities=14% Similarity=0.126 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCC-
Q psy7357 36 IGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKD- 114 (302)
Q Consensus 36 ~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~- 114 (302)
..++++.+++.++++..++..++|++.. ...+++.+ .+ +.|++++|.|+.+...++..|.+++.+|.+.+
T Consensus 56 ~~~lr~~ia~~~~~~~~~i~it~Ga~~~--l~~~~~~~------~~-~~v~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~ 126 (354)
T PRK06358 56 YLELRKRIASFEQLDLENVILGNGATEL--IFNIVKVT------KP-KKVLILAPTFAEYERALKAFDAEIEYAELTEET 126 (354)
T ss_pred HHHHHHHHHHHhCCChhhEEECCCHHHH--HHHHHHHh------CC-CcEEEecCChHHHHHHHHHcCCeeEEEeCcccc
Confidence 3578888999999988888888888522 22223322 23 57889999988887788899999999998753
Q ss_pred -CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcc-ccccc-CCC---CccC
Q psy7357 115 -GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMN-AQVGL-CRP---GDYG 185 (302)
Q Consensus 115 -g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~-~~~~~-~~p---~~~g 185 (302)
..+| +++.+.+. +++++|++++| |+||..- +.+++|.++|+++|+++++|.++.- ..... .++ ....
T Consensus 127 ~~~~d-~~~~~~~~---~~~~~v~~~~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~ 202 (354)
T PRK06358 127 NFAAN-EIVLEEIK---EEIDLVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENF 202 (354)
T ss_pred CCCcc-HHHHHhhc---cCCCEEEEeCCCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCC
Confidence 3688 66666665 56888999999 5999873 1588999999999999999998631 11110 000 0111
Q ss_pred Cc-EEEeCCCcccCCCCCCCCCcceeEEEe-CCCCCCC
Q psy7357 186 SD-VSHLNLHKTFCIPHGGGGPGMGPIGVK-SHLAPFL 221 (302)
Q Consensus 186 aD-iv~~~~hK~l~~p~~~gGp~~G~l~~~-~~l~~~l 221 (302)
.. |++.|..|+|+. .|.|+||++++ +.+.+.+
T Consensus 203 ~~vi~~~S~SK~~gl----~G~RiG~lv~~~~~~~~~~ 236 (354)
T PRK06358 203 KNLIIIRAFTKFFAI----PGLRLGYGLTSNKNLAEKL 236 (354)
T ss_pred CCEEEEEechhhccC----cchhheeeecCCHHHHHHH
Confidence 23 455555666654 49999999985 4554433
No 264
>PRK08354 putative aminotransferase; Provisional
Probab=99.48 E-value=1e-12 Score=121.25 Aligned_cols=150 Identities=16% Similarity=0.193 Sum_probs=105.4
Q ss_pred HHHHHHHHHHhCCCeeeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCC
Q psy7357 37 GELETDLCEITGYDKISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDG 115 (302)
Q Consensus 37 ~e~~~~l~~l~g~~~~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g 115 (302)
..+++.+++.+|. ++..++|++ +. ..+..+ . .++|+|++++|.|+.+...++..|.+++.++
T Consensus 43 ~~l~~~ia~~~~~---~I~vt~G~~~al-~~~~~~--~------~~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~----- 105 (311)
T PRK08354 43 EWLEEEFSKLFGE---PIVITAGITEAL-YLIGIL--A------LRDRKVIIPRHTYGEYERVARFFAARIIKGP----- 105 (311)
T ss_pred HHHHHHHHHHHCC---CEEECCCHHHHH-HHHHHh--h------CCCCeEEEeCCCcHHHHHHHHHcCCEEeecC-----
Confidence 4567788888884 456677764 33 222221 1 4689999999999988888999999997764
Q ss_pred CCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcEEEeC
Q psy7357 116 TIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDVSHLN 192 (302)
Q Consensus 116 ~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDiv~~~ 192 (302)
+|++.+++.++ +++.++++|| ||||.+- +++++|.++|+++|+++|+|.++.--...-..+ ...--+++.+
T Consensus 106 -~d~~~l~~~~~----~~~~vi~~~P~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~~-~~~~vi~~~S 179 (311)
T PRK08354 106 -NDPEKLEELVE----RNSVVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPESP-EGENIIKLRT 179 (311)
T ss_pred -CCHHHHHHhhc----CCCEEEEecCCCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcchhcccccccc-CCCcEEEEec
Confidence 57899988875 3567899999 5999873 257888888999999999999862111010111 1222355666
Q ss_pred CCcccCCCCCCCCCcceeEEE
Q psy7357 193 LHKTFCIPHGGGGPGMGPIGV 213 (302)
Q Consensus 193 ~hK~l~~p~~~gGp~~G~l~~ 213 (302)
..|+|+.| |.|+|++++
T Consensus 180 ~SK~~~l~----GlRiG~~v~ 196 (311)
T PRK08354 180 FTKSYGLP----GIRVGYVKG 196 (311)
T ss_pred cHhhcCCc----cceeeeeee
Confidence 67777655 899999998
No 265
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=99.48 E-value=2.4e-13 Score=127.61 Aligned_cols=166 Identities=17% Similarity=0.127 Sum_probs=117.2
Q ss_pred cccHHHHHHHHHHHHHHHhCCCe---eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccH-HHHHhCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYDK---ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNP-ASAQMAG 103 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~---~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~-~~~~~~g 103 (302)
+.-+.+.++++++.++++++.+. +.+..+||+.|.++++..+. .+++++++. ...||.+. ..++..|
T Consensus 32 ~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl~--------~~~~~~l~i~~G~fg~r~~~~a~~~g 103 (349)
T TIGR01364 32 SKEFEAVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLL--------AEGKVADYIVTGAWSKKAAKEAKKYG 103 (349)
T ss_pred chHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcC--------CCCCeEEEEECCHHHHHHHHHHHHhC
Confidence 44566999999999999999732 34555678888777776654 356665544 34555443 3677889
Q ss_pred CEEEEeecCC----CCCCCHHHHHHHHhccCCCeEEEEEec-CCCceeccccHHHHHHHHHHhCCEEEEecCCccccccc
Q psy7357 104 MSVEPVSVRK----DGTIDFSDLETKVKKNKETLSCLMITY-PSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGL 178 (302)
Q Consensus 104 ~~v~~i~~~~----~g~iD~~~l~~~i~~~~~~t~~V~i~~-Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~ 178 (302)
. +..+..++ ...+|+++++ ++ ++++.|.+++ .|++|+.. + ++++.++++++||+++..+...+
T Consensus 104 ~-~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~v~~th~ETstGv~~-~-----~l~~~~~~l~iVDavss~g~~~i 171 (349)
T TIGR01364 104 V-VNVVASGKEGNYTKIPDPSTWE--IS---EDAAYVHYCANETIHGVEF-R-----ELPDVKNAPLVADMSSNILSRPI 171 (349)
T ss_pred C-cEEEeccccCCCCCCCCHHhcC--CC---CCCCEEEEcCCCCcccEec-c-----eecccCCCeEEEEccccccCccC
Confidence 8 77777542 2346776655 23 5677787776 46899987 3 56667899999999986555543
Q ss_pred CCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 179 CRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 179 ~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
+..+ .|++++++||+|+ | ||+|+++++++++++++.
T Consensus 172 -d~~~--~d~~~~ssqK~lg-P-----~Glg~l~~s~~~~~~~~~ 207 (349)
T TIGR01364 172 -DVSK--FGLIYAGAQKNIG-P-----AGLTVVIVRKDLLGRASR 207 (349)
T ss_pred -CHHH--ccEEEEecccccC-C-----CceEEEEECHHHHhhccc
Confidence 3334 4699999999886 5 789999999887766643
No 266
>PLN02822 serine palmitoyltransferase
Probab=99.47 E-value=6.8e-13 Score=129.52 Aligned_cols=170 Identities=14% Similarity=0.135 Sum_probs=120.8
Q ss_pred ccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEe
Q psy7357 30 RGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPV 109 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i 109 (302)
-|..+...++++.++++++.+.. +...+|..++.+++.++. +++|.|++.+..|++....+...+.+++.+
T Consensus 150 yg~~~~~~~Lee~La~~~~~~~~-i~~s~G~~a~~sai~a~~--------~~gd~Ii~d~~~H~s~~~~~~ls~~~~~~~ 220 (481)
T PLN02822 150 YGTIDVHLDCETKIAKFLGTPDS-ILYSYGLSTIFSVIPAFC--------KKGDIIVADEGVHWGIQNGLYLSRSTIVYF 220 (481)
T ss_pred ccCHHHHHHHHHHHHHHhCCCCE-EEECCHHHHHHHHHHHhC--------CCCCEEEEeCCccHHHHHHHHHcCCeEEEE
Confidence 36678899999999999998754 444456555545544432 688999988888877666677778899998
Q ss_pred ecCCCCCCCHHHHHHHHhcc------CCCe-EEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCccccccc---
Q psy7357 110 SVRKDGTIDFSDLETKVKKN------KETL-SCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGL--- 178 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~------~~~t-~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~--- 178 (302)
+.+ |.++++..+++. ++++ ++|++..+ +++|.+. |+++|.++|++||+++++|+++..+..+-
T Consensus 221 ~~n-----d~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~-~L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~ 294 (481)
T PLN02822 221 KHN-----DMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIA-PLDEIVRLKEKYRFRVLLDESNSFGVLGKSGR 294 (481)
T ss_pred CCC-----CHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCcc-CHHHHHHHHHHcCCEEEEECCccccccCCCCC
Confidence 864 566666665431 1334 67777766 4789999 79999999999999999999986433210
Q ss_pred ---CCCC--ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 179 ---CRPG--DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 179 ---~~p~--~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
...+ ...+|+++++.+|+|+.+ | |++++++++++.+
T Consensus 295 G~~e~~~v~~~~~dii~~s~sKalg~~----G---G~i~g~~~ii~~~ 335 (481)
T PLN02822 295 GLSEHFGVPIEKIDIITAAMGHALATE----G---GFCTGSARVVDHQ 335 (481)
T ss_pred ChHHHcCCCCCCCeEEEecchhhhhhC----C---eEEEcCHHHHHHH
Confidence 0001 124689999888988632 2 8999988776654
No 267
>PRK07908 hypothetical protein; Provisional
Probab=99.47 E-value=6.4e-13 Score=124.37 Aligned_cols=163 Identities=14% Similarity=0.095 Sum_probs=112.9
Q ss_pred HHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCCC
Q psy7357 37 GELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGT 116 (302)
Q Consensus 37 ~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g~ 116 (302)
.++++.+++.+|.+..++..++|++. +...+++ + .++ .+++..|.|..+...++..|.+++.+|.++++.
T Consensus 61 ~~lr~aia~~~~~~~~~I~it~Ga~~--al~~~~~-l------~~~-~viv~~P~y~~~~~~~~~~G~~i~~v~~~~~~~ 130 (349)
T PRK07908 61 RRARAAVAARHGRTPDEVLLLAGAAE--GFALLAR-L------RPR-RAAVVHPSFTEPEAALRAAGIPVHRVVLDPPFR 130 (349)
T ss_pred HHHHHHHHHHhCcChhhEEECCCHHH--HHHHHHh-c------CCC-eEEEeCCCChHHHHHHHHcCCEEEeeccCcccC
Confidence 45667777788988888888888752 2222222 2 344 556677777666667788999999999987677
Q ss_pred CCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcc-cccccCCCCccC-Cc-EEEeC
Q psy7357 117 IDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMN-AQVGLCRPGDYG-SD-VSHLN 192 (302)
Q Consensus 117 iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~-~~~~~~~p~~~g-aD-iv~~~ 192 (302)
+|++++ + +++++++++|| |+||.+. +.++|.++|++ +.++|+|.++.- ..+...+..... .+ +++.+
T Consensus 131 ~d~~~l----~---~~~~~i~l~np~NPTG~~~-~~~~l~~l~~~-~~~iIvDe~y~~~~~~~~~~l~~~~~~~~i~i~S 201 (349)
T PRK07908 131 LDPAAV----P---DDADLVVIGNPTNPTSVLH-PAEQLLALRRP-GRILVVDEAFADAVPGEPESLAGDDLPGVLVLRS 201 (349)
T ss_pred cChhHh----c---cCCCEEEEcCCCCCCCCCc-CHHHHHHHHhc-CCEEEEECcchhhccCCccccccccCCCEEEEee
Confidence 888754 3 56788999999 5999998 68999999964 778889998631 111111111111 24 44457
Q ss_pred CCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 193 LHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 193 ~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
.+|+|+.| |.|+|++++++++++.+.
T Consensus 202 ~SK~~~l~----GlRiG~~~~~~~~~~~~~ 227 (349)
T PRK07908 202 LTKTWSLA----GLRVGYALGAPDVLARLT 227 (349)
T ss_pred cccccCCc----cceeeeeecCHHHHHHHH
Confidence 78877654 899999999887776654
No 268
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=99.46 E-value=1.3e-12 Score=130.91 Aligned_cols=164 Identities=14% Similarity=-0.008 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCC-
Q psy7357 35 LIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRK- 113 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~- 113 (302)
.+.+.|+.++++||++.+.+.++++|.++.++++++. ++||+||+++..|-+....+.+.|+++++++...
T Consensus 196 ~i~eAe~~aA~~fgAd~tyfvvNGTS~~n~av~~a~~--------~~Gd~VLvdRN~HKSv~~aLilsga~PVYl~P~~n 267 (713)
T PRK15399 196 PHLEAEEYIARTFGAEQSYIVTNGTSTSNKIVGMYAA--------PAGSTLLIDRNCHKSLAHLLMMSDVVPIWLKPTRN 267 (713)
T ss_pred HHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHhc--------CCCCEEEeecccHHHHHHHHHHcCCeeEEeccccc
Confidence 5889999999999999988877777788878887765 7899999999999887778889999999997543
Q ss_pred -C---CCCCH-----HHHHHHHhccCC--CeEEEEEecCCCceeccccHHHHHHHHHHhCCEE-EEecCCccc--ccc-c
Q psy7357 114 -D---GTIDF-----SDLETKVKKNKE--TLSCLMITYPSTFGVFEENITDVCELIHEHGGQV-YLDGANMNA--QVG-L 178 (302)
Q Consensus 114 -~---g~iD~-----~~l~~~i~~~~~--~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~ll-ivD~a~~~~--~~~-~ 178 (302)
. |.++. +.++++|+++++ +++++++++|++.|++- |+++|.+++ |+.+ ++|+|+... +.. +
T Consensus 268 ~~Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~pTYdGi~y-d~~~I~~~~---g~~~ilvDEAhgah~~F~p~~ 343 (713)
T PRK15399 268 ALGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNSTYDGLLY-NTDWIKQTL---DVPSIHFDSAWVPYTHFHPIY 343 (713)
T ss_pred ccCCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECCCCCceee-CHHHHHHHh---CCCEEEEeccchhhhhcCccc
Confidence 2 34566 999999987642 23689999999999999 899999998 6665 699987321 111 1
Q ss_pred C--CCCcc--CCcEE---EeCCCcccCCCCCCCCCcceeEEEeC
Q psy7357 179 C--RPGDY--GSDVS---HLNLHKTFCIPHGGGGPGMGPIGVKS 215 (302)
Q Consensus 179 ~--~p~~~--gaDiv---~~~~hK~l~~p~~~gGp~~G~l~~~~ 215 (302)
. .+... ++|.+ +.|+||+|+.- -+..+|-++.
T Consensus 344 ~~~sam~~~~~aD~~i~~tQStHKtL~al-----TQaS~iHvk~ 382 (713)
T PRK15399 344 QGKSGMSGERVPGKVIFETQSTHKMLAAF-----SQASLIHIKG 382 (713)
T ss_pred CCcChhhCCCCCCeeeeeeeehhcccccc-----chheeeeecC
Confidence 1 11112 57887 99999999732 1456665544
No 269
>PRK08637 hypothetical protein; Provisional
Probab=99.46 E-value=2.6e-12 Score=122.11 Aligned_cols=179 Identities=15% Similarity=0.167 Sum_probs=117.5
Q ss_pred CCCCCCcccccHHHHHHHHHHHHHHHhC-CCe---eeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCccc
Q psy7357 21 HPFIPQDQARGYEQLIGELETDLCEITG-YDK---ISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTN 95 (302)
Q Consensus 21 ~py~p~e~sqG~l~~~~e~~~~l~~l~g-~~~---~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~ 95 (302)
..|.| .+|..+++..+.+.+.+..+ .+. .++..++|++ +... .++.+. +++|+|++++|.|+.+
T Consensus 38 ~~Y~~---~~G~~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~---~~~~l~-----~~gd~Vlv~~P~y~~~ 106 (388)
T PRK08637 38 FPYAP---PQGIPELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSL---VADLFV-----DQGDTVLLPDHNWGNY 106 (388)
T ss_pred cCCCC---CCCCHHHHHHHHHHHhccCccccccccceeeEccchHHHHHH---HHHHhc-----CCCCEEEEcCCCCccH
Confidence 44544 68988888888777765432 221 3456677764 3322 222221 6899999999999888
Q ss_pred HHHH-HhCCCEEEEeecC-CCCCCCHHHHHHHHhc-cCCCeEEEEEecC-CCceecc--ccHHHHHHHHHH-----hCCE
Q psy7357 96 PASA-QMAGMSVEPVSVR-KDGTIDFSDLETKVKK-NKETLSCLMITYP-STFGVFE--ENITDVCELIHE-----HGGQ 164 (302)
Q Consensus 96 ~~~~-~~~g~~v~~i~~~-~~g~iD~~~l~~~i~~-~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~-----~g~l 164 (302)
.... ...|.+++.+|.+ +++.+|++++++.++. .++.+.+++++|| ||||..- ..+++|.++|++ ++++
T Consensus 107 ~~~~~~~~g~~vv~v~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~ 186 (388)
T PRK08637 107 KLTFNTRRGAEIVTYPIFDEDGGFDTDALKEALQAAYNKGKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVV 186 (388)
T ss_pred HHHHHHhcCCEEEEecccCCCCcCCHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEE
Confidence 7754 4689999999984 4556899999998861 1244566778888 6999762 257888887775 8999
Q ss_pred EEEecCCc-cccccc-CCC--C---ccCCcEE---EeCCCcccCCCCCCCCCcceeEEEe
Q psy7357 165 VYLDGANM-NAQVGL-CRP--G---DYGSDVS---HLNLHKTFCIPHGGGGPGMGPIGVK 214 (302)
Q Consensus 165 livD~a~~-~~~~~~-~~p--~---~~gaDiv---~~~~hK~l~~p~~~gGp~~G~l~~~ 214 (302)
+|.|.++. .....- ..+ . +..-+++ +.++.|.++.| |.|+||+.+.
T Consensus 187 iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~p----GlRlG~~~~~ 242 (388)
T PRK08637 187 AVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVW----GFRVGFITFG 242 (388)
T ss_pred EEecccchhcccCCccchhhHHHhhcccccceEEEeccccccCCCc----ccceEEEEEc
Confidence 99999863 111110 000 0 1111332 23667877765 8999999865
No 270
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=99.44 E-value=5.8e-12 Score=122.35 Aligned_cols=178 Identities=20% Similarity=0.165 Sum_probs=128.2
Q ss_pred cccHHHHHHHHHHHHHHHhCCCe--eeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCE
Q psy7357 29 ARGYEQLIGELETDLCEITGYDK--ISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMS 105 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~--~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~ 105 (302)
.+|..++++++.+.+....|... .++..++|++ |... .++.+. ++||.|++-+|.|.......+..|++
T Consensus 131 ~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~al~l---~~~~l~-----~pGd~v~vE~PtY~~~~~~~~~~g~~ 202 (459)
T COG1167 131 TAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQALDL---LLRLLL-----DPGDTVLVEDPTYPGALQALEALGAR 202 (459)
T ss_pred CCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHHHHHHH---HHHHhC-----CCCCEEEEcCCCcHHHHHHHHHcCCc
Confidence 68999999999999987777654 4788888885 3322 222221 68999999999987667788899999
Q ss_pred EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEec--CCCceecc--ccHHHHHHHHHHhCCEEEEecCCcc-cccccCC
Q psy7357 106 VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITY--PSTFGVFE--ENITDVCELIHEHGGQVYLDGANMN-AQVGLCR 180 (302)
Q Consensus 106 v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~--Pn~~G~~~--~di~~I~~ia~~~g~llivD~a~~~-~~~~~~~ 180 (302)
++.||+|++| +|+|+|++.+.++ ++++++++. -||+|..- +.-++|.++|+++++++|=|..+.. .......
T Consensus 203 ~~~vp~d~~G-~~~e~le~~~~~~--~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~ 279 (459)
T COG1167 203 VIPVPVDEDG-IDPEALEEALAQW--KPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPP 279 (459)
T ss_pred EEecCCCCCC-CCHHHHHHHHhhc--CCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCC
Confidence 9999998655 8999999999864 455565543 26888762 2568999999999999998876521 1111111
Q ss_pred C--C---ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 181 P--G---DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 181 p--~---~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
| . ..+-=|.++++.|+++ | |-|+||+++++++++++-
T Consensus 280 ~~l~~ld~~~rViy~gSFSK~l~-P----glRlG~vv~p~~~~~~~~ 321 (459)
T COG1167 280 PPLKALDAPGRVIYLGSFSKTLA-P----GLRLGYVVAPPELIEKLL 321 (459)
T ss_pred CChHhhCCCCCEEEEeeehhhcc-c----ccceeeeeCCHHHHHHHH
Confidence 1 1 1122367777888887 3 669999999988776653
No 271
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=99.44 E-value=7.2e-13 Score=126.91 Aligned_cols=186 Identities=16% Similarity=0.182 Sum_probs=117.9
Q ss_pred CCCCCCcccccHHHHHHHHHHHHHHHhCC--CeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEE-cCCCCcccHH
Q psy7357 21 HPFIPQDQARGYEQLIGELETDLCEITGY--DKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLI-PVSAHGTNPA 97 (302)
Q Consensus 21 ~py~p~e~sqG~l~~~~e~~~~l~~l~g~--~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv-~~~~hg~~~~ 97 (302)
.-|.+ .+|..++++.+.+.+.+..|. +..++..++|++. +...++..+....+.+++|.|++ .+|.|+.+..
T Consensus 68 ~~Y~~---~~G~~~LR~aia~~~~~~~g~~v~~~~I~it~Ga~~--al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~ 142 (416)
T PRK09440 68 GNYDG---PQGKDELIEALAALLNERYGWNISPQNIALTNGSQS--AFFYLFNLFAGRRADGSLKKILFPLAPEYIGYAD 142 (416)
T ss_pred ccCCC---CCCCHHHHHHHHHHHHHHhCCCCChhhEEEccChHH--HHHHHHHHHhccccCCCCCeEEEecCCCchhhHH
Confidence 34555 688888999999988887775 4457888888852 21222222211001125789999 5898877766
Q ss_pred HHHhCC----CEEEEeecCCC---CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc--ccHHHHHHHHHHhCCEEEE
Q psy7357 98 SAQMAG----MSVEPVSVRKD---GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE--ENITDVCELIHEHGGQVYL 167 (302)
Q Consensus 98 ~~~~~g----~~v~~i~~~~~---g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~g~lliv 167 (302)
.+...+ ..+..++++.+ ..+|+++|+ ++ +++++++++|| ||||.+- ..+++|.++|+++++++|+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~---~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~ 217 (416)
T PRK09440 143 AGLEEDLFVSYRPNIELLPEGQFKYHVDFEHLH--ID---EDTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLI 217 (416)
T ss_pred HhhccCceeecccccccccccccccCCCHHHcc--cC---CCceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEE
Confidence 443222 22233344332 368999987 34 67899999999 5999873 2588999999999999999
Q ss_pred ecCCccccccc----CCCCccCCc-EEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 168 DGANMNAQVGL----CRPGDYGSD-VSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 168 D~a~~~~~~~~----~~p~~~gaD-iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
|.++....... ..+. +.-. |++.|.+|+ + +.|.|+|++++++++++.+.
T Consensus 218 De~Y~~~~~~~~~~~~~~~-~~~~vI~~~SfSK~-~----~pGlRiG~~i~~~~l~~~~~ 271 (416)
T PRK09440 218 DNAYGPPFPGIIFSEATPL-WNPNIILCMSLSKL-G----LPGVRCGIVIADEEIIEALS 271 (416)
T ss_pred eCCccccCCCcchhhcCcc-ccCCeEEEeccccc-C----CCcceEEEEeCCHHHHHHHH
Confidence 99873111000 0111 1113 445555663 4 45899999999887766553
No 272
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=99.43 E-value=4e-13 Score=126.67 Aligned_cols=165 Identities=10% Similarity=0.047 Sum_probs=113.8
Q ss_pred cccHHHHHHHHHHHHHHHhCCCe--eeEe-eCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH-HHHhC--
Q psy7357 29 ARGYEQLIGELETDLCEITGYDK--ISFQ-PNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA-SAQMA-- 102 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~--~~~~-~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~-~~~~~-- 102 (302)
+.-+.+.+++.++.+++++|++. ..+. +++|+.+..+++.++. .+ +.+++....|++... .++..
T Consensus 36 ~~~f~~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~l~--------~~-~~l~i~~G~~~~~~~~~a~~~~~ 106 (361)
T TIGR01366 36 QAPVKNLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFGLI--------EK-KSLHLSFGEFSSKFAKAVKLAPW 106 (361)
T ss_pred ChHHHHHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHhcc--------cc-cccEEecCHHHHHHHHHHHhhhc
Confidence 44567899999999999999843 2333 4667777656555542 22 344555677776544 33331
Q ss_pred CCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEec-CCCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCC
Q psy7357 103 GMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITY-PSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRP 181 (302)
Q Consensus 103 g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~-Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p 181 (302)
..++..++.++...+|. .++ ++++.|.+++ .|.+|++. |+++| +|++|+++++|+++..+...+ +.
T Consensus 107 ~~~~~~~~~~~~~~~~~-----~~~---~~~~lV~~~h~et~tG~~~-pi~~I---~~~~g~~~iVDavqs~g~~~i-dv 173 (361)
T TIGR01366 107 LGEPIIVTADPGSAPEP-----QAD---PGVDVIAWAHNETSTGVAV-PVRRP---EGSDDALVVIDATSGAGGLPV-DI 173 (361)
T ss_pred cCCceEEecCCCCCCCC-----ccC---CCCCEEEEcccCCccceec-ccccc---cccCCCeEEEEcCccccCCCC-CH
Confidence 23777788766544444 233 6888888777 57899999 79887 589999999999986655544 23
Q ss_pred CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 182 GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 182 ~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
. .+|++++++||+|+.| ||++++++++++++++.
T Consensus 174 ~--~~D~~~~s~~K~lg~~-----~Gl~~~~~s~~~~~~~~ 207 (361)
T TIGR01366 174 A--ETDVYYFAPQKNFASD-----GGLWLAIMSPAALERIE 207 (361)
T ss_pred H--HCCEEEEEchhhcCCC-----CceEEEEECHHHHhhhh
Confidence 3 2899999999999754 46888888887766554
No 273
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=99.42 E-value=7.1e-12 Score=119.49 Aligned_cols=173 Identities=17% Similarity=0.172 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHh-hcCC-CCCEEE-EcCCCCcccHHHHHhCC-------
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQA-QDAH-HRNVCL-IPVSAHGTNPASAQMAG------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~-~g~~-~~d~Vl-v~~~~hg~~~~~~~~~g------- 103 (302)
+...++++.+++++|.+. .+..+||++|+++++.+++.+... .|.. .+++|+ .....||.........+
T Consensus 83 ~~~~~l~~~l~~~~~~~~-~~~~~SGs~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~ 161 (401)
T PRK00854 83 DQLAPLYEELAALTGSHK-VLPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGG 161 (401)
T ss_pred HHHHHHHHHHHhhCCCCE-EEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCcccccc
Confidence 456789999999999865 456789999988888888765321 1211 234544 45567877654332111
Q ss_pred -----CEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc---cHHHHHHHHHHhCCEEEEecCCccc
Q psy7357 104 -----MSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE---NITDVCELIHEHGGQVYLDGANMNA 174 (302)
Q Consensus 104 -----~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~---di~~I~~ia~~~g~llivD~a~~~~ 174 (302)
..+..+|. .|+++|++.+. +++++|++++| |++|.+.+ .+++|+++|+++|+++|+|+++. +
T Consensus 162 ~~~~~~~~~~~~~-----~d~~~le~~i~---~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~-g 232 (401)
T PRK00854 162 FGPFTPGFRVVPF-----GDAEALEAAIT---PNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQT-G 232 (401)
T ss_pred CCCCCCCeEEeCC-----CCHHHHHHHhC---CCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-C
Confidence 12333332 48999999997 78999999998 58898752 29999999999999999999984 2
Q ss_pred ccccC-----CCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 175 QVGLC-----RPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 175 ~~~~~-----~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
++... ......+|+++.+ |+|++ |.+++|++++++++++.+.
T Consensus 233 ~g~~g~~~~~~~~g~~~D~~~~~--K~l~g----g~~~ig~v~~~~~~~~~l~ 279 (401)
T PRK00854 233 LGRTGKLLAEEHEGIEADVTLIG--KALSG----GFYPVSAVLSNSEVLGVLK 279 (401)
T ss_pred CCCCchHhHHhhcCCCCCEEEec--ccccC----CccCeEEEEEcHHHHhccc
Confidence 32110 0111246998874 88863 3468999999988777664
No 274
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=99.42 E-value=1.3e-11 Score=117.19 Aligned_cols=177 Identities=18% Similarity=0.161 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCC-CCcccHHHHHhCCCEEEE---e
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVS-AHGTNPASAQMAGMSVEP---V 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~-~hg~~~~~~~~~g~~v~~---i 109 (302)
+...++.++++++++.+. .+...+|++|+++++.+++.+....|...+++|++.++ .||.........+..... .
T Consensus 73 ~~~~~la~~l~~~~~~~~-v~~~~sGseA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~ 151 (389)
T PRK01278 73 PEQERLAERLVENSFADK-VFFTNSGAEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFG 151 (389)
T ss_pred hHHHHHHHHHHhhCCCCE-EEEcCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCC
Confidence 455678889999887664 45678899998888888887644333233457777766 555554443333321111 1
Q ss_pred ecCCCC----CCCHHHHHHHHhccCCCeEEEEEecCC-Ccee-c--cccHHHHHHHHHHhCCEEEEecCCcccccccCC-
Q psy7357 110 SVRKDG----TIDFSDLETKVKKNKETLSCLMITYPS-TFGV-F--EENITDVCELIHEHGGQVYLDGANMNAQVGLCR- 180 (302)
Q Consensus 110 ~~~~~g----~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~-~--~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~- 180 (302)
|..++. ..|+++++++++ +++++|+++.++ +.|. . .+++++|+++|+++|+++|+|+++. +++....
T Consensus 152 ~~~~~~~~~~~~d~~~l~~~l~---~~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~g~~g~~ 227 (389)
T PRK01278 152 PLVPGFDQVPFGDIEALKAAIT---PNTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQC-GMGRTGKL 227 (389)
T ss_pred CCCCCceEeCCCCHHHHHHhhC---CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCCcc
Confidence 111111 258999999997 689999988654 5663 2 2269999999999999999999874 2211100
Q ss_pred -C-C--ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 181 -P-G--DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 181 -p-~--~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+ . ....|++++ .|+++ +|.++|++++++++++.+.
T Consensus 228 ~~~~~~~~~pdi~t~--sK~l~-----~G~~ig~~~~~~~~~~~~~ 266 (389)
T PRK01278 228 FAHEWAGVTPDIMAV--AKGIG-----GGFPLGACLATEEAAKGMT 266 (389)
T ss_pred eeecccCCCCCEEEE--ehhcc-----CCcceEEEEEcHHHHhccC
Confidence 0 1 123577766 58776 4688999999988777664
No 275
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=99.41 E-value=4.4e-13 Score=126.03 Aligned_cols=169 Identities=15% Similarity=0.129 Sum_probs=109.3
Q ss_pred ccHHHHHHHHHHHHHHHhCCC-ee--eEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH-HHHhCCCE
Q psy7357 30 RGYEQLIGELETDLCEITGYD-KI--SFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA-SAQMAGMS 105 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~-~~--~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~-~~~~~g~~ 105 (302)
.-+.+.++++++.+++++|++ .. .+..+||+.+..++..++. . .+ +++++|++ ..++.+.. .++..|++
T Consensus 40 ~~~~~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~l~---~-~~-~~~~~i~~--g~~~~~~~~~a~~~g~~ 112 (355)
T cd00611 40 KDFEAIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPLNLL---G-DK-GTADYVVT--GAWSAKAAKEAKRYGGV 112 (355)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcC---C-CC-CeEEEEEC--CHHHHHHHHHHHhcCCC
Confidence 566789999999999999973 22 3333446666545555442 1 11 24555444 23332322 56788999
Q ss_pred EEEeecCCCCCC-C-HHHHHHHHhccCCCeEEEEEec-CCCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCC
Q psy7357 106 VEPVSVRKDGTI-D-FSDLETKVKKNKETLSCLMITY-PSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPG 182 (302)
Q Consensus 106 v~~i~~~~~g~i-D-~~~l~~~i~~~~~~t~~V~i~~-Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~ 182 (302)
++.++.+++|.. | ++..+..++ ++++.|.+++ .|.+|+..+ ++++.+|++++||+++..+...+ +..
T Consensus 113 ~~~~~~~~~g~~~~~~~~~~~~~~---~~~~lV~~~h~~t~tG~~~~------~i~~~~g~~~~VDa~qs~g~~~i-dv~ 182 (355)
T cd00611 113 VVIVAAKEEGKYTKIPDVETWDLA---PDAAYVHYCSNETIHGVEFD------EVPDTGGVPLVADMSSNILSRPI-DVS 182 (355)
T ss_pred cEEEecccccCCCCCCCHhhcCCC---CCCCEEEEeCCcccccEEcc------eecccCCCeEEEEccccccCCCC-CHH
Confidence 999998655433 4 222223344 7788888777 467898742 34455999999999986666554 344
Q ss_pred ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 183 DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 183 ~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
++ |+++.++||+|+ | ||+|++++++++.++++.
T Consensus 183 ~~--~~~~ss~~K~lG-P-----~G~g~l~~~~~~~~~~~~ 215 (355)
T cd00611 183 KF--GVIYAGAQKNLG-P-----AGVTVVIVRKDLLGKARK 215 (355)
T ss_pred Hh--CEEEeecccccC-C-----CceEEEEECHHHHhhccc
Confidence 44 466666799775 5 689999999877766543
No 276
>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type. This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.
Probab=99.41 E-value=7.6e-13 Score=124.91 Aligned_cols=169 Identities=14% Similarity=0.066 Sum_probs=123.4
Q ss_pred cccccHHHHHHHHHHHHHHHhCCC--e-eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCccc-H-HHHHh
Q psy7357 27 DQARGYEQLIGELETDLCEITGYD--K-ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTN-P-ASAQM 101 (302)
Q Consensus 27 e~sqG~l~~~~e~~~~l~~l~g~~--~-~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~-~-~~~~~ 101 (302)
-.++-+.+++.++++.++++++.+ . +.+.++||+.+.++++..+.. ++++++++.. .||.. . ..++.
T Consensus 32 HRs~~F~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~-------~~g~~vLv~g-~FG~r~~~eia~~ 103 (374)
T TIGR01365 32 HRSKLGKEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLG-------CRGVDVLAWE-SFGKGWVTDVTKQ 103 (374)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCC-------CCCCeEEEEC-HHHHHHHHHHHHh
Confidence 346678899999999999999974 2 345678888887788777641 3677888865 67765 3 57788
Q ss_pred CCC-EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCCcccccccCC
Q psy7357 102 AGM-SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCR 180 (302)
Q Consensus 102 ~g~-~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~ 180 (302)
+|+ ++..+..++...+|+++++. + .. .+++.|-+++|+.. |+++|.+.. ++++++||++..++...+ +
T Consensus 104 ~g~~~v~~l~~~~g~~~~~~~ve~--~---~~--v~~vhnETSTGv~n-pv~~i~~~~--~~~lliVDavSs~g~~~l-~ 172 (374)
T TIGR01365 104 LKLPDVRVLEAEYGKLPDLKKVDF--K---ND--VVFTWNGTTSGVRV-PNGDFIPAD--REGLTICDATSAAFAQDL-D 172 (374)
T ss_pred cCCCCcEEEcCCCCCCCCHHHcCC--C---CC--EEEecCCCchheec-ccccccccc--CCCcEEEEccchhcCCCC-C
Confidence 999 58888877777889999873 2 22 23444446899999 787766432 489999999754333332 2
Q ss_pred CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 181 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 181 p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
.. ++|+++.+++|+|+.| ||+++++++++.++++
T Consensus 173 ~d--~iDv~~tgsQK~L~~p-----pGls~v~vs~~Al~~~ 206 (374)
T TIGR01365 173 YH--KLDVVTFSWQKVLGGE-----GAHGMLILSPRAVARL 206 (374)
T ss_pred hh--HCcEEEEechhccCCC-----CceEEEEECHHHHHHH
Confidence 22 4999999999999976 7999999998766543
No 277
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=99.40 E-value=1.4e-11 Score=117.49 Aligned_cols=175 Identities=19% Similarity=0.183 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHHHhCCCe-eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCC-CCcccHHHHHhC-------
Q psy7357 32 YEQLIGELETDLCEITGYDK-ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVS-AHGTNPASAQMA------- 102 (302)
Q Consensus 32 ~l~~~~e~~~~l~~l~g~~~-~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~-~hg~~~~~~~~~------- 102 (302)
..+...++++.+++++|.+. ..+..++|++|+++++.+++.+ .++++|++.++ .|+.........
T Consensus 77 ~~~~~~~l~~~l~~~~~~~~~~v~~~~sgsea~~~al~~~~~~------~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~ 150 (413)
T cd00610 77 YNEPAVELAELLLALTPEGLDKVFFVNSGTEAVEAALKLARAY------TGRKKIISFEGAYHGRTLGALSLTGSKKYRG 150 (413)
T ss_pred CCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHH------cCCCeEEEECCCcCCccHHHHHhcCCccccc
Confidence 45678899999999999433 2445678888887777776654 45778888775 566555443322
Q ss_pred -----CCEEEEeecCCC------CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecccc----HHHHHHHHHHhCCEEE
Q psy7357 103 -----GMSVEPVSVRKD------GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEEN----ITDVCELIHEHGGQVY 166 (302)
Q Consensus 103 -----g~~v~~i~~~~~------g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~d----i~~I~~ia~~~g~lli 166 (302)
..+++.+|.++. ...|+++|++.++++++++++|++... +++|.+. + +++|.++|+++|+++|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~~~G~~~-~~~~~l~~l~~l~~~~~~~li 229 (413)
T cd00610 151 GFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEHPEEVAAVIVEPIQGEGGVIV-PPPGYLKALRELCRKHGILLI 229 (413)
T ss_pred cCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCcc-CCHHHHHHHHHHHHHcCCEEE
Confidence 224667776521 234899999999855446666665543 3568765 3 9999999999999999
Q ss_pred EecCCcccccccC-----CCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 167 LDGANMNAQVGLC-----RPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 167 vD~a~~~~~~~~~-----~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
+|+++. +++... ......+|++++ .|+|+ +|.++|++++++++++.+
T Consensus 230 ~Dev~~-g~g~~g~~~~~~~~~~~~d~~t~--sK~l~-----~g~~~g~~~~~~~~~~~~ 281 (413)
T cd00610 230 ADEVQT-GFGRTGKMFAFEHFGVEPDIVTL--GKGLG-----GGLPLGAVLGREEIMDAF 281 (413)
T ss_pred Eecccc-CCCcCcchhhHhhcCCCCCeEEE--ccccc-----CccccEEEEEcHHHHHhh
Confidence 999874 221110 001123577766 48776 246799999998887775
No 278
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=99.40 E-value=1.5e-11 Score=117.27 Aligned_cols=172 Identities=18% Similarity=0.212 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHHHHHhCCC--------
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPASAQMAGM-------- 104 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~~~~~~g~-------- 104 (302)
+...+++++|+++++.+. .+..+||++|+++++..++.|...++...+++|+.. ...||.+....+..+.
T Consensus 77 ~~~~~la~~L~~~~~~~~-~~f~~SGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~ 155 (397)
T TIGR03246 77 EPVLRLAKKLVDATFADK-VFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFA 155 (397)
T ss_pred HHHHHHHHHHHhhCCCCE-EEEeCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCC
Confidence 456789999999988764 456789999988999988877433221234455554 4678877654443332
Q ss_pred ----EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCC-Cceecc---ccHHHHHHHHHHhCCEEEEecCCccccc
Q psy7357 105 ----SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPS-TFGVFE---ENITDVCELIHEHGGQVYLDGANMNAQV 176 (302)
Q Consensus 105 ----~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~---~di~~I~~ia~~~g~llivD~a~~~~~~ 176 (302)
.+..+|. .|++++++.++ +++++|+++.++ ..|++. ..+++|+++|+++|+++|+|+++ .+++
T Consensus 156 ~~~~~~~~~~~-----~d~~~l~~~l~---~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~-tG~G 226 (397)
T TIGR03246 156 PLPGGIKHAPY-----NDLAAAKALIS---DKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQ-TGVG 226 (397)
T ss_pred CCCCceEEeCC-----CCHHHHHHHhc---cCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechh-hcCC
Confidence 2223332 38999999997 789999988654 556542 25999999999999999999997 3332
Q ss_pred ccC---CCCc--cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 177 GLC---RPGD--YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 177 ~~~---~p~~--~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
... .... ..+|+++. .|.++ ||..+|++++++++++.+.
T Consensus 227 r~G~~~a~~~~gv~pDi~t~--~K~lg-----gG~pigav~~~~~i~~~~~ 270 (397)
T TIGR03246 227 RTGELYAYMHYGVTPDILTS--AKALG-----GGFPIGAMLTTTEIAAHLK 270 (397)
T ss_pred ccccchhhhhcCCCCCEEEe--ehhhh-----CCcceeEEEEcHHHHHhcc
Confidence 110 1111 23688866 47664 4688999999988877664
No 279
>PRK14808 histidinol-phosphate aminotransferase; Provisional
Probab=99.38 E-value=2.7e-12 Score=119.71 Aligned_cols=161 Identities=14% Similarity=0.095 Sum_probs=109.7
Q ss_pred HHHHHHHHHHhC---CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCC
Q psy7357 37 GELETDLCEITG---YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRK 113 (302)
Q Consensus 37 ~e~~~~l~~l~g---~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~ 113 (302)
.++++.+++.++ .+..++..++|++. +...+++.+ |.|++++|.|..+...++..|.+++.+|.++
T Consensus 59 ~~Lr~aia~~~~~~~~~~~~i~it~Ga~~--~i~~~~~~~---------d~v~v~~P~y~~~~~~~~~~g~~~~~v~~~~ 127 (335)
T PRK14808 59 EELIEKILSYLDTDFLSKNNVSVGNGADE--IIYVMMLMF---------DRSVFFPPTYSCYRIFAKAVGAKFLEVPLTK 127 (335)
T ss_pred HHHHHHHHHHhCCCCCCcceEEEcCCHHH--HHHHHHHHh---------CcEEECCCCHHHHHHHHHHcCCeEEEecCCC
Confidence 455666666666 67778888888742 223333321 4689999998888888999999999999987
Q ss_pred CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCccccc-ccCCCCccCCc-EEE
Q psy7357 114 DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQV-GLCRPGDYGSD-VSH 190 (302)
Q Consensus 114 ~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~-~~~~p~~~gaD-iv~ 190 (302)
++.+|... + .++++|+++|| ||||..- +.+++.+++ ++++++++|.++.--.. ...+....... |++
T Consensus 128 ~~~~~~~~----~----~~~~~i~i~nP~NPTG~~~-s~~~l~~l~-~~~~~ii~DE~Y~~f~~~~~~~~~~~~~~vi~~ 197 (335)
T PRK14808 128 DLRIPEVN----V----GEGDVVFIPNPNNPTGHVF-EREEIERIL-KTGAFVALDEAYYEFHGESYVDLLKKYENLAVI 197 (335)
T ss_pred cCCCChhH----c----cCCCEEEEeCCCCCCCCCc-CHHHHHHHH-hcCCEEEEECchhhhcCCchHHHHHhCCCEEEE
Confidence 77665432 2 24578999999 5999987 688888888 57999999998631101 01011111123 444
Q ss_pred eCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 191 LNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 191 ~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
.+..|+|+ +.|.|+|++++++++++.+.
T Consensus 198 ~S~SK~~~----l~GlRvG~~v~~~~~~~~l~ 225 (335)
T PRK14808 198 RTFSKAFS----LAAQRIGYVVSSEKFIDAYN 225 (335)
T ss_pred Eechhhcc----CcccceEEEEeCHHHHHHHH
Confidence 55556555 44999999999987776653
No 280
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=99.37 E-value=1.4e-11 Score=116.26 Aligned_cols=178 Identities=18% Similarity=0.189 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEE----EEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSV----EPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v----~~i 109 (302)
+...++++.+++++|.+. .+...+|+++++.++.+++.+....+ .++++|+++++.|..+...+...+... ...
T Consensus 69 ~~~~~l~~~la~~~g~~~-~~~~~sg~~a~~~a~~~~~~~~~~~~-~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~ 146 (379)
T TIGR00707 69 EPQEELAEKLVEHSGADR-VFFCNSGAEANEAALKLARKYTGDKG-KEKKKIIAFENSFHGRTMGALSATGQPKYQKGFE 146 (379)
T ss_pred HHHHHHHHHHHhhCCCCE-EEEeCCcHHHHHHHHHHHHHHhhccC-CCCCeEEEECCCcCCccHHHHHhcCChhhhccCC
Confidence 457788999999999884 45567788887677776654421111 136888888876544433222222211 112
Q ss_pred ecCCCCC----CCHHHHHHHHhccCCCeEEEEEecCC-Cceecc---ccHHHHHHHHHHhCCEEEEecCCc-cccccc-C
Q psy7357 110 SVRKDGT----IDFSDLETKVKKNKETLSCLMITYPS-TFGVFE---ENITDVCELIHEHGGQVYLDGANM-NAQVGL-C 179 (302)
Q Consensus 110 ~~~~~g~----iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~---~di~~I~~ia~~~g~llivD~a~~-~~~~~~-~ 179 (302)
+...+.. .|++++++.++ +++++|+++.+| ++|... +++++|.++|+++|+++++|+++. .+..+. .
T Consensus 147 ~~~~~~~~~~~~d~~~l~~~~~---~~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~~ 223 (379)
T TIGR00707 147 PLVPGFSYAPYNDIESLKKAID---DETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFF 223 (379)
T ss_pred CCCCCceeeCCCCHHHHHHHhh---hCeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhh
Confidence 2222211 28999999998 678889886554 556532 158999999999999999999874 211110 0
Q ss_pred CCC--ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 180 RPG--DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 180 ~p~--~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
... ....|++++ +|+|+ +|.++|++++++++++.+..
T Consensus 224 ~~~~~~~~~d~~t~--sK~~~-----~G~riG~~~~~~~~~~~~~~ 262 (379)
T TIGR00707 224 AYEHYGIEPDIITL--AKGLG-----GGVPIGATLAKEEVAEAFTP 262 (379)
T ss_pred hHHhcCCCCCEEEE--ccccc-----CCcccEEEEEcHHHHhhhcC
Confidence 001 123577765 58776 37899999999888776643
No 281
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=99.36 E-value=2e-11 Score=114.99 Aligned_cols=167 Identities=22% Similarity=0.266 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHhCC-CeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCC-CCcccHHHHHhCC--C-------
Q psy7357 36 IGELETDLCEITGY-DKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVS-AHGTNPASAQMAG--M------- 104 (302)
Q Consensus 36 ~~e~~~~l~~l~g~-~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~-~hg~~~~~~~~~g--~------- 104 (302)
--++.+.++++++. +... +.+||++|.++++...|+| ..||+|+.-+. .||.+....-..| .
T Consensus 95 Ei~~Aell~~~~p~~e~vr-fvnSGTEAtmsAiRlARa~------TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~ 167 (432)
T COG0001 95 EVELAELLIERVPSIEKVR-FVNSGTEATMSAIRLARAY------TGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPS 167 (432)
T ss_pred HHHHHHHHHHhcCcccEEE-EecchhHHHHHHHHHHHHh------hCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCC
Confidence 34566788888886 5554 4689999988888888887 67787777665 6666544332211 1
Q ss_pred ----------EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEec-CCCceeccc---cHHHHHHHHHHhCCEEEEecC
Q psy7357 105 ----------SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITY-PSTFGVFEE---NITDVCELIHEHGGQVYLDGA 170 (302)
Q Consensus 105 ----------~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~-Pn~~G~~~~---di~~I~~ia~~~g~llivD~a 170 (302)
.++.+|+ -|++.+++++++.++++++|++.- ....|++.| -+++++++|+++|+++|+|++
T Consensus 168 s~Gvp~~~a~~ti~~~y-----ND~~al~~~~~~~g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEV 242 (432)
T COG0001 168 SPGVPADVAKHTLVLPY-----NDLEALEEAFEEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEV 242 (432)
T ss_pred CCCCChhhhccEEEecC-----CCHHHHHHHHHHcCCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecc
Confidence 2333343 499999999998888999998875 245677643 488999999999999999997
Q ss_pred Cc---ccccccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 171 NM---NAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 171 ~~---~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
.. +++++...--...+|+.+. .|-++ ||-.+|.+..++++++++
T Consensus 243 iTGFR~~~gGaq~~~gi~PDlttl--GKiIG-----GGlP~ga~gGr~eiM~~~ 289 (432)
T COG0001 243 ITGFRVALGGAQGYYGVEPDLTTL--GKIIG-----GGLPIGAFGGRAEIMEQL 289 (432)
T ss_pred hhhcccCCcccccccCcCcchhhh--hhhhc-----CCcceeeeccHHHHHhhh
Confidence 53 2333322211223688887 58776 577899999999999866
No 282
>COG3844 Kynureninase [Amino acid transport and metabolism]
Probab=99.34 E-value=2e-11 Score=110.00 Aligned_cols=171 Identities=18% Similarity=0.191 Sum_probs=122.1
Q ss_pred ccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHH-HHHHHHHHHHHhhcCCCCCEEEEcCCC-CcccHHH----HHhCC
Q psy7357 30 RGYEQLIGELETDLCEITGYDKISFQPNSGAQGEY-AGLRAIQCYHQAQDAHHRNVCLIPVSA-HGTNPAS----AQMAG 103 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~-a~l~a~~~~~~~~g~~~~d~Vlv~~~~-hg~~~~~----~~~~g 103 (302)
+.+..+-+.+-.+++-|.|....++...+++..+. -++.+.. + ..++++||+++.. +++.... +...+
T Consensus 72 ~~W~~lp~~lgdklApLiGA~~~Evvv~dtts~nl~k~L~aal-----r-~~~~r~vIv~E~~~fpTdly~a~g~~~~~~ 145 (407)
T COG3844 72 ADWFDLPERLGDKLAPLIGARAGEVVVTDTTSINLFKVLAAAL-----R-PQEGRRVIVSEGDNFPTDLYIAEGLADLLG 145 (407)
T ss_pred CchhhchhHHHHHhhhhhcCCCCceEEeCCcchHHHHHHHHHh-----c-cCCCceEEeecCCCCCcchhhhcchhhhhc
Confidence 45556667778899999998765555555554332 2222222 1 1457788888763 4443322 22333
Q ss_pred CEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCC-CceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCC
Q psy7357 104 MSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPS-TFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPG 182 (302)
Q Consensus 104 ~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~ 182 (302)
. ..+-.+.+++++++++++ ++++.|++++-| .||.+- |+.+|.+++|++|++++.|=+|..+...+ ...
T Consensus 146 ~-----~~~~~~~~~P~~~~~~~~---dd~AvV~L~~V~y~TGql~-dm~aiT~~AH~~galv~wDLAHsaGavp~-~Lh 215 (407)
T COG3844 146 I-----GYDLEGVIAPRALEEAIT---DDVAVVLLSHVNYKTGQLL-DMRAITALAHQHGALVGWDLAHSAGAVPV-DLH 215 (407)
T ss_pred c-----cccceeeeChHHHHHhhc---cceEEEEecccccccccee-eHHHHHHHHHhcCceEEeehhcccCCcce-eec
Confidence 2 233356788999999999 899999999888 589998 89999999999999999999886655543 456
Q ss_pred ccCCcEEEeCCCcccCCCCCCCCCc-ceeEEEeCCCCCCC
Q psy7357 183 DYGSDVSHLNLHKTFCIPHGGGGPG-MGPIGVKSHLAPFL 221 (302)
Q Consensus 183 ~~gaDiv~~~~hK~l~~p~~~gGp~-~G~l~~~~~l~~~l 221 (302)
.+|+|+.++.++|.|. |||| .+++++.++..+..
T Consensus 216 ~~gaDfaigcsyKYLN-----gGPGapa~l~v~~~h~e~~ 250 (407)
T COG3844 216 AAGADFAIGCSYKYLN-----GGPGAPAGLFVAPRHRERS 250 (407)
T ss_pred ccCCCeeeeeeceecc-----CCCCCceeEEecccccccc
Confidence 7899999999999996 6884 78888876655543
No 283
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=99.34 E-value=5.3e-11 Score=113.36 Aligned_cols=163 Identities=22% Similarity=0.245 Sum_probs=109.5
Q ss_pred HHHHHHHHHHhCCC--eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcC-CCCcccHHHHHhCCC---------
Q psy7357 37 GELETDLCEITGYD--KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPV-SAHGTNPASAQMAGM--------- 104 (302)
Q Consensus 37 ~e~~~~l~~l~g~~--~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~-~~hg~~~~~~~~~g~--------- 104 (302)
.++.++++++++.+ ...+...+|++|+++++.+++.. .+++|+..+ ..||.........|.
T Consensus 88 ~~la~~l~~~~~~~~~~~v~~~~sgsea~~~al~~~~~~-------g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~ 160 (398)
T PRK03244 88 IALAERLVELLGAPEGGRVFFCNSGAEANEAAFKLARLT-------GRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEP 160 (398)
T ss_pred HHHHHHHHHhCCCCCCCEEEEeCchHHHHHHHHHHHHHH-------CCCeEEEECCCcCCccHHHHhccCCcccccCCCC
Confidence 47888999998854 23455677888877777665532 234555554 456655444433332
Q ss_pred ---EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecccc---HHHHHHHHHHhCCEEEEecCCcccccc
Q psy7357 105 ---SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEEN---ITDVCELIHEHGGQVYLDGANMNAQVG 177 (302)
Q Consensus 105 ---~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~d---i~~I~~ia~~~g~llivD~a~~~~~~~ 177 (302)
++..+|. .|++++++.++ +++++|+++.+ |++|.+.++ +++|.++|+++|+++|+|+++. +++.
T Consensus 161 ~~~~~~~~~~-----~d~~~l~~~~~---~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-g~gr 231 (398)
T PRK03244 161 LPGGVEHVPY-----GDVDALAAAVD---DDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQT-GIGR 231 (398)
T ss_pred CCCCceEeCC-----CCHHHHHHhhc---CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CCcc
Confidence 2233332 38999999986 68999999876 688987633 8999999999999999999874 2221
Q ss_pred cC-----CCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 178 LC-----RPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 178 ~~-----~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
.. .......|++++ +|+|+ +|.++|++++++++++.+.
T Consensus 232 ~g~~~~~~~~~~~pDi~t~--sK~l~-----~G~~ig~~~~~~~~~~~~~ 274 (398)
T PRK03244 232 TGAWFAHQHDGVTPDVVTL--AKGLG-----GGLPIGACLAFGPAADLLT 274 (398)
T ss_pred cchHHhhhhhCCCCCEEEE--chhhh-----CCcccEEEEEcHHHHhhcc
Confidence 00 111234688877 48886 3678999999987766654
No 284
>PLN02955 8-amino-7-oxononanoate synthase
Probab=99.32 E-value=2.4e-11 Score=117.17 Aligned_cols=181 Identities=15% Similarity=0.130 Sum_probs=123.7
Q ss_pred cccccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHH---H---hhcCCCCCEEEEcCCCCcccHHHHH
Q psy7357 27 DQARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYH---Q---AQDAHHRNVCLIPVSAHGTNPASAQ 100 (302)
Q Consensus 27 e~sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~---~---~~g~~~~d~Vlv~~~~hg~~~~~~~ 100 (302)
...-|..++..++++.|++++|.+.+.+ ..+|-.|+++++.++.... . ....++++.|+.....|.+-...++
T Consensus 140 rl~~G~~~~h~~LE~~LA~f~g~e~all-~sSGy~AN~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ 218 (476)
T PLN02955 140 ALICGYTTYHRLLESSLADLKKKEDCLV-CPTGFAANMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVR 218 (476)
T ss_pred CccccChHHHHHHHHHHHHHHCCCcEEE-ECChHHHHHHHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHH
Confidence 3456888899999999999999988644 5678888867666652110 0 0001345666766667766555554
Q ss_pred hC----CCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEec-CCCceeccccHHHHHHHHHHhCCEEEEecCCcccc
Q psy7357 101 MA----GMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITY-PSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQ 175 (302)
Q Consensus 101 ~~----g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~-Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~ 175 (302)
.. +.++..++. .|+++|++++++++++.+.|++.. -+..|.+. |+++|.++|+++|+++++|.+|..+.
T Consensus 219 ls~~~~~a~~~~f~H-----ND~~~Le~~L~~~~~~~~~Vv~EgV~SmdGdia-pL~eL~~L~~~~ga~LiVDEAH~~Gv 292 (476)
T PLN02955 219 LAERQGNVEVFVYRH-----CDMYHLNSLLSSCKMKRKVVVTDSLFSMDGDFA-PMEELSQLRKKYGFLLVIDDAHGTFV 292 (476)
T ss_pred hccccCCceEEEeCC-----CCHHHHHHHHHhCCCCceEEEEeCCCCCCCCcC-CHHHHHHHHHHcCcEEEEcccccCce
Confidence 43 567777664 599999999976655555555443 25778888 79999999999999999999986443
Q ss_pred ccc---CCCCcc----CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 176 VGL---CRPGDY----GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 176 ~~~---~~p~~~----gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
.+. .....+ ..||+++++.|.|+ -.+|++++++++++.+
T Consensus 293 ~G~~G~G~~e~~g~~~di~ii~~TLsKA~G-------~~GGfi~gs~~~~~~l 338 (476)
T PLN02955 293 CGENGGGVAEEFNCEADVDLCVGTLSKAAG-------CHGGFIACSKKWKQLI 338 (476)
T ss_pred ecCCCCcHHHHhCCCCCCcEEEEeCccchh-------ccCceeecHHHHHHHH
Confidence 221 001112 46899998888765 3458899987665544
No 285
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=99.32 E-value=2e-11 Score=111.99 Aligned_cols=196 Identities=18% Similarity=0.147 Sum_probs=122.8
Q ss_pred ccccCCcCCccCCCCCCCcccccHHHHHHHHHHHHHHHhCCCeeeE--eeCchHHHHHHHHHHHHHHHHhhcCCCCCEEE
Q psy7357 9 MIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISF--QPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCL 86 (302)
Q Consensus 9 ~~~~~~~~ft~~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~~~~--~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vl 86 (302)
+.-.+...|...|-|.-.+ .-++.+++-.++.||.+.+-+ +..||+.|.-.++.++. ++||+++
T Consensus 35 ~~~vs~~hf~~tTGYGY~D------~GRd~le~iyA~vfgaE~ALVRpq~vSGTHAi~~~Lfg~L--------rpGD~ll 100 (403)
T PF06838_consen 35 ENRVSDSHFAGTTGYGYDD------IGRDKLERIYADVFGAEDALVRPQFVSGTHAIALALFGVL--------RPGDELL 100 (403)
T ss_dssp HTT--GGGCS---TT-TT-------HHHHHHHHHHHHHCT-SEEEEETTS-SHHHHHHHHHHHH----------TT-EEE
T ss_pred HcCCChhhcCCCCcCCCCC------ccHHHHHHHHHHHhCchhhhhcccccchHHHHHHHHHhcC--------CCCCeEE
Confidence 4445666776667776522 346778888999999998644 56699988766666665 6899977
Q ss_pred EcC-CCCcccHH----------HHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCC-C----ceecccc
Q psy7357 87 IPV-SAHGTNPA----------SAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPS-T----FGVFEEN 150 (302)
Q Consensus 87 v~~-~~hg~~~~----------~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~----~G~~~~d 150 (302)
... ..|-+-.. +.+..|++...+|+.+||.+|.+.++++++ ++|++|+++-.. + .=.++ +
T Consensus 101 ~~tG~PYDTL~~VIG~~g~~~GSL~e~Gi~Y~~v~L~~dg~~D~~~i~~~~~---~~tk~v~IQRSrGYs~R~sl~i~-~ 176 (403)
T PF06838_consen 101 SITGKPYDTLEEVIGIRGNGPGSLKEFGIKYREVPLTEDGTIDWEAIKKALK---PNTKMVLIQRSRGYSWRPSLTIE-E 176 (403)
T ss_dssp ESSSS--CCHHHHHTSSSSSSSSTGGGT-EEEE--B-TTSSB-HHHHHHHHH---TTEEEEEEE-S-TTSSS----HH-H
T ss_pred EcCCCchhhHHHHhCCCCCCCCChHHhCceeEEEeecCCCCcCHHHHHHhhc---cCceEEEEecCCCCCCCCCCCHH-H
Confidence 432 23333222 234678999999999999999999999999 899999999632 1 11335 6
Q ss_pred HHHHHHHHHHh--CCEEEEecCCcccccccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCcc
Q psy7357 151 ITDVCELIHEH--GGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPL 226 (302)
Q Consensus 151 i~~I~~ia~~~--g~llivD~a~~~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~~ 226 (302)
|+++.+++|+. +++++||..+-. +....-|.+.|+|++.+|+=|-.+.-. -|..||++.+++++++..-|+.
T Consensus 177 I~~~i~~vk~~~p~~iifVDNCYGE-FvE~~EP~~vGADl~aGSLIKNpGGgi---AptGGYIaGr~~lVe~~a~RLT 250 (403)
T PF06838_consen 177 IKEIIKFVKEINPDVIIFVDNCYGE-FVETQEPTEVGADLMAGSLIKNPGGGI---APTGGYIAGRKDLVERAAYRLT 250 (403)
T ss_dssp HHHHHHHHHHH-TTSEEEEE-TTTT-TTSSS-GGGGT-SEEEEETTSGGGTTT----SS-EEEEESHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhCCCeEEEEeCCcce-eccccCccccchhheeccceeCCCCCc---cCcCCEEechHHHHHHHHhhhc
Confidence 88888888875 679999965421 111245788999999999888665211 1789999999999988755553
No 286
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=99.32 E-value=2.3e-11 Score=114.73 Aligned_cols=179 Identities=20% Similarity=0.196 Sum_probs=129.4
Q ss_pred cccccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEE
Q psy7357 27 DQARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSV 106 (302)
Q Consensus 27 e~sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v 106 (302)
..--|+.+...++++.+++++|.+.+- ..+||=.|+.+++.++. +++|.|+.....|-+-...++..+.++
T Consensus 77 R~i~G~~~~h~~LE~~lA~f~g~e~al-~f~SGy~AN~~~i~~l~--------~~~dli~~D~lnHASiidG~rls~a~~ 147 (388)
T COG0156 77 RLISGTSDLHVELEEELADFLGAEAAL-LFSSGFVANLGLLSALL--------KKGDLIFSDELNHASIIDGIRLSRAEV 147 (388)
T ss_pred CcccCCcHHHHHHHHHHHHHhCCCcEE-EEcccchhHHHHHHHhc--------CCCcEEEEechhhhhHHHHHHhCCCcE
Confidence 344688899999999999999998764 45678777877777665 578887777778877666777888888
Q ss_pred EEeecCCCCCCCHHHHHHHHhccCC---CeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCccccccc----
Q psy7357 107 EPVSVRKDGTIDFSDLETKVKKNKE---TLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGL---- 178 (302)
Q Consensus 107 ~~i~~~~~g~iD~~~l~~~i~~~~~---~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~---- 178 (302)
+..+- .|+++||+.+.+.+. +-+.|++..- +-.|.+- |+++|.+++++||++++||.+|.++..+-
T Consensus 148 ~~f~H-----nD~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiA-pL~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG 221 (388)
T COG0156 148 RRFKH-----NDLDHLEALLEEARENGARRKLIVTEGVFSMDGDIA-PLPELVELAEKYGALLYVDEAHAVGVLGPNGRG 221 (388)
T ss_pred EEecC-----CCHHHHHHHHHhhhccCCCceEEEEeccccCCCCcC-CHHHHHHHHHHhCcEEEEEccccccccCCCCcc
Confidence 87774 699999999985321 1233444332 4578888 79999999999999999999997655431
Q ss_pred --CCCCc--cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC----CCCccc
Q psy7357 179 --CRPGD--YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL----PVHPLS 227 (302)
Q Consensus 179 --~~p~~--~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l----pg~~~~ 227 (302)
...+- ...||++++..|.|+ -.+|+++++..+.+.+ ++.++.
T Consensus 222 ~~e~~g~~~~~vdi~~gTlsKAlG-------s~Gg~v~g~~~~~d~L~~~ar~~ifS 271 (388)
T COG0156 222 LAEHFGLEPEEVDIIVGTLGKALG-------SSGGYIAGSAALIDYLRNRARPFIFS 271 (388)
T ss_pred HHHHhCCCCccceEEEEEchhhhc-------ccCceeeCcHHHHHHHHHhCCceecc
Confidence 01111 124899998888886 2348888887655543 555653
No 287
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=99.31 E-value=1.2e-10 Score=111.11 Aligned_cols=176 Identities=15% Similarity=0.246 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhh-cC-CCCCEEEEcCCC-CcccHHHHHhCC-------
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQ-DA-HHRNVCLIPVSA-HGTNPASAQMAG------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~-g~-~~~d~Vlv~~~~-hg~~~~~~~~~g------- 103 (302)
+...++++++++++|.+. .+..+||++|+++++..++.+.... +. +.+++|+..+.. ||.........+
T Consensus 79 ~~~~~l~~~l~~~~~~~~-~~~~~SGs~A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~ 157 (401)
T TIGR01885 79 DVFGEFAEYVTKLFGYDK-VLPMNTGAEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRTN 157 (401)
T ss_pred HHHHHHHHHHHhhcCCCE-EEEeCccHHHHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCcccccc
Confidence 566789999999998764 4567899999889988877653211 11 224566655544 665544433322
Q ss_pred -----CEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc---cHHHHHHHHHHhCCEEEEecCCccc
Q psy7357 104 -----MSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE---NITDVCELIHEHGGQVYLDGANMNA 174 (302)
Q Consensus 104 -----~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~---di~~I~~ia~~~g~llivD~a~~~~ 174 (302)
..+..+|. .|+++|+++++++.+++++|++..+ +++|.+.+ .+++|.++|+++|+++++|+++ .+
T Consensus 158 ~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~-~g 231 (401)
T TIGR01885 158 FGPYVPGFKKIPY-----NNLEALEEALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQ-TG 231 (401)
T ss_pred cCCCCCCceEeCC-----CCHHHHHHHHHhcCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechh-hC
Confidence 12333332 3799999999765567888888764 57788752 2999999999999999999997 34
Q ss_pred cc--cc---CCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 175 QV--GL---CRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 175 ~~--~~---~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
++ +. .....+.+|+++++ |.|+ .||.++|++++++++++.+.
T Consensus 232 ~g~~G~~~~~~~~~~~~di~~~g--K~l~----~g~~~ig~v~~~~~i~~~~~ 278 (401)
T TIGR01885 232 LGRTGKLLCVDHENVKPDIVLLG--KALS----GGVYPVSAVLADDDVMLTIK 278 (401)
T ss_pred CCccchhhHHhhcCCCCCEEEee--cccc----CCCCCcEEEEEcHHHHhhcc
Confidence 32 11 00112457888864 8775 35678999999987766553
No 288
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=99.29 E-value=1.1e-10 Score=111.08 Aligned_cols=179 Identities=15% Similarity=0.190 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHh-hcC-CCCCEEEEcC-CCCcccHHHHHhCCCEEE---
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQA-QDA-HHRNVCLIPV-SAHGTNPASAQMAGMSVE--- 107 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~-~g~-~~~d~Vlv~~-~~hg~~~~~~~~~g~~v~--- 107 (302)
+...++++.++++++++.+ +..+||+.|+++++..++.+... +|. ..+++|++.+ ..||.........+-...
T Consensus 73 ~~~~~~~~~l~~~~~~~~~-~~~~SGs~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~ 151 (400)
T PTZ00125 73 DVLGLAEKYITDLFGYDKV-LPMNSGAEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNN 151 (400)
T ss_pred HHHHHHHHHHHhCCCCCEE-EEeCCcHHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhcc
Confidence 4678889999999988754 56789999988888877654221 111 1245555555 467766554432221110
Q ss_pred EeecCCC----CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecccc---HHHHHHHHHHhCCEEEEecCCccccc--c
Q psy7357 108 PVSVRKD----GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEEN---ITDVCELIHEHGGQVYLDGANMNAQV--G 177 (302)
Q Consensus 108 ~i~~~~~----g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~d---i~~I~~ia~~~g~llivD~a~~~~~~--~ 177 (302)
..+..++ ...|++++++.++ .+++++|+++.+ |++|.+.++ +++|.++|+++|+++|+|+++. +++ +
T Consensus 152 ~~~~~~~~~~~~~~d~~~le~~l~--~~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~-g~g~~G 228 (400)
T PTZ00125 152 FGPFVPGFELVDYNDVEALEKLLQ--DPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQT-GLGRTG 228 (400)
T ss_pred CCCCCCCceEeCCCCHHHHHHHhC--CCCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCccc
Confidence 0111000 1238999999996 257899988765 688987622 9999999999999999999873 232 1
Q ss_pred c-CCC--CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 178 L-CRP--GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 178 ~-~~p--~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
. ... ....+|+++++ |+|+ .|++++|++++++++.+.+.
T Consensus 229 ~~~~~~~~~~~pd~~~~s--K~l~----~g~~~ig~v~~~~~~~~~~~ 270 (400)
T PTZ00125 229 KLLAHDHEGVKPDIVLLG--KALS----GGLYPISAVLANDDVMLVIK 270 (400)
T ss_pred hhhHHHhcCCCCCEEEEc--cccc----CCCcCcEEEEEcHHHHhhcc
Confidence 0 011 11236888874 8886 24568999999988777654
No 289
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=99.29 E-value=2.6e-10 Score=107.82 Aligned_cols=167 Identities=20% Similarity=0.220 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcC-CCCcccHHHHHhCCC-------
Q psy7357 33 EQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPV-SAHGTNPASAQMAGM------- 104 (302)
Q Consensus 33 l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~-~~hg~~~~~~~~~g~------- 104 (302)
.+...++.+++++.++.+. .+...+|++|+++++..++.+ ..+++|++.+ ..||.........+.
T Consensus 70 ~~~~~~la~~l~~~~~~~~-~~~~~sG~~a~~~A~~~a~~~------~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~ 142 (377)
T PRK02936 70 NSLQEEVASLLAENSAGDL-VFFCNSGAEANEAALKLARKH------TGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGF 142 (377)
T ss_pred CHHHHHHHHHHHhcCCCCE-EEEeCCcHHHHHHHHHHHHHh------cCCCeEEEECCCcCCCcHHhhhccCCccccccC
Confidence 3566777788887776654 456788999887887765543 3445666665 467766554432221
Q ss_pred -----EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc---cHHHHHHHHHHhCCEEEEecCCcccc
Q psy7357 105 -----SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE---NITDVCELIHEHGGQVYLDGANMNAQ 175 (302)
Q Consensus 105 -----~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~---di~~I~~ia~~~g~llivD~a~~~~~ 175 (302)
++..+|. -|++++++.++ +++++|+++.+ +..|...+ .+++|.++|+++|+++|+|.++. ++
T Consensus 143 ~~~~~~~~~~~~-----~d~~~l~~~~~---~~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~-g~ 213 (377)
T PRK02936 143 GPLLPGFTHVPF-----NDIKALKEVMN---EEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQT-GI 213 (377)
T ss_pred CCCCCCceEeCC-----CCHHHHHHhcc---CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CC
Confidence 1122222 28999999997 78899988775 35555531 49999999999999999999873 33
Q ss_pred cccCCC---Ccc--CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 176 VGLCRP---GDY--GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 176 ~~~~~p---~~~--gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+....+ ..+ ..|++++ +|+|+ +|.++|++++++++.+.+.
T Consensus 214 g~~g~~~~~~~~~~~~di~t~--sK~l~-----~G~~ig~v~~~~~~~~~~~ 258 (377)
T PRK02936 214 GRTGTLFAYEQFGLDPDIVTV--AKGLG-----NGIPVGAMIGKKELGTAFG 258 (377)
T ss_pred CcCchhhHHHhhCCCCcEEEE--ccccc-----CCCccEEEEEcHHHHhhcc
Confidence 211001 112 3577765 58776 3678999999988877664
No 290
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase. This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.
Probab=99.28 E-value=8.3e-11 Score=113.06 Aligned_cols=175 Identities=17% Similarity=0.160 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCC-CCcccHHHHHh--CCCEEEEeec
Q psy7357 35 LIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVS-AHGTNPASAQM--AGMSVEPVSV 111 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~-~hg~~~~~~~~--~g~~v~~i~~ 111 (302)
...++.++|++++.-....+..++|++|++++++.++.+ ..+++|+..++ .||........ .+......|.
T Consensus 89 ~~~~lae~l~~~~~~~~~v~~~~sGseA~e~Alk~ar~~------~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~ 162 (423)
T TIGR00713 89 AEILLAKEIISRVPSVEMVRFVNSGTEATMSAVRLARGY------TGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPT 162 (423)
T ss_pred HHHHHHHHHHHhCCcccEEEEeCCHHHHHHHHHHHHHHh------hCCCEEEEEcCCCCCChhhhhccccCcccccCCCC
Confidence 345677777777654334566788999988888887766 34577777766 55543322211 1111111111
Q ss_pred CC--------C----CCCCHHHHHHHHhccCCCeEEEEEe-cCCCceecccc---HHHHHHHHHHhCCEEEEecCCc-cc
Q psy7357 112 RK--------D----GTIDFSDLETKVKKNKETLSCLMIT-YPSTFGVFEEN---ITDVCELIHEHGGQVYLDGANM-NA 174 (302)
Q Consensus 112 ~~--------~----g~iD~~~l~~~i~~~~~~t~~V~i~-~Pn~~G~~~~d---i~~I~~ia~~~g~llivD~a~~-~~ 174 (302)
.+ + -..|++++++.++++.+++++|++. .|+.+|.+.++ +++|.++|+++|+++|+|+++. +.
T Consensus 163 ~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r 242 (423)
T TIGR00713 163 SPGVPEDFAKLTLVLPYNDLEALEEVFEEYGEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFR 242 (423)
T ss_pred CCCCCcccccceEEeCCCCHHHHHHHHHHcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccccc
Confidence 00 0 0128999999998655678888886 56667877532 8999999999999999999873 11
Q ss_pred ccccCCC--CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 175 QVGLCRP--GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 175 ~~~~~~p--~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
.+..... .....|++++ .|+++ +|.++|++++++++++.+.
T Consensus 243 ~g~~~~~~~~~~~pDi~t~--sK~l~-----~G~pig~v~~~~~i~~~~~ 285 (423)
T TIGR00713 243 VALGGAQEYFGVEPDLTTL--GKIIG-----GGLPVGAFGGRREIMERLA 285 (423)
T ss_pred cCcchhHHHhCCCcchhhh--hhhhc-----CCCceeeeeEHHHHHHhhC
Confidence 1100000 1123576654 46665 4688999999988877664
No 291
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=99.28 E-value=1.9e-10 Score=109.93 Aligned_cols=173 Identities=17% Similarity=0.230 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEE-EcCCCCcccHHHHHhCC---------
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCL-IPVSAHGTNPASAQMAG--------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vl-v~~~~hg~~~~~~~~~g--------- 103 (302)
+...++.++++++++.+. .+..+||++|+++++..++.+...++...+++|+ +....||.+....+..+
T Consensus 82 ~~~~~l~~~l~~~~~~~~-~~~~~sGseA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~ 160 (403)
T PRK05093 82 EPALRLAKKLIDATFAER-VFFANSGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFG 160 (403)
T ss_pred HHHHHHHHHHHhhCCCCE-EEEeCchHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCC
Confidence 344588899999887664 4567899999888888877764222111234444 44567887654332211
Q ss_pred ---CEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCc-eecc---ccHHHHHHHHHHhCCEEEEecCCccccc
Q psy7357 104 ---MSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTF-GVFE---ENITDVCELIHEHGGQVYLDGANMNAQV 176 (302)
Q Consensus 104 ---~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~-G~~~---~di~~I~~ia~~~g~llivD~a~~~~~~ 176 (302)
.+++.+|. -|++++++.++ +++++|+++..+++ |.+. ..+++|.++|++||+++|+|.++. +++
T Consensus 161 ~~~~~~~~~~~-----~d~~~l~~~l~---~~~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~g 231 (403)
T PRK05093 161 PKPADITHVPF-----NDLAAVKAVID---DHTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQT-GMG 231 (403)
T ss_pred CCCCCcEEeCC-----CCHHHHHHHhc---CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-CCC
Confidence 12333332 28999999997 68899988854544 4442 149999999999999999999874 232
Q ss_pred ccC---CCCc--cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 177 GLC---RPGD--YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 177 ~~~---~p~~--~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
-.. .... ...|+.++ .|+++ +|.++|++++++++++.+..
T Consensus 232 ~~g~~~~~~~~~~~pdi~s~--sK~l~-----~G~rig~vv~~~~i~~~l~~ 276 (403)
T PRK05093 232 RTGDLFAYMHYGVTPDILTS--AKALG-----GGFPIGAMLTTAEIASHFKV 276 (403)
T ss_pred CCccchhhhhcCCCCCEEEe--ccccc-----CCcceEEEEEcHHHHhhcCC
Confidence 111 1111 23577665 48776 37899999999888777654
No 292
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=99.27 E-value=3.7e-11 Score=111.94 Aligned_cols=166 Identities=24% Similarity=0.321 Sum_probs=111.5
Q ss_pred HHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCC-----CCcccHHHHHhCCCEEEEeecC
Q psy7357 38 ELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVS-----AHGTNPASAQMAGMSVEPVSVR 112 (302)
Q Consensus 38 e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~-----~hg~~~~~~~~~g~~v~~i~~~ 112 (302)
++.+.++.++|.+.+.+ .+..+.|.+.++.++ .++++|+++.. .|...+..++..|++++++..
T Consensus 72 ~~~~~~~~~~~aea~~i-vnnn~aAVll~~~al---------~~~~EvVis~g~lV~gg~~~v~d~~~~aG~~l~EvG~- 140 (395)
T COG1921 72 ELAELLCGLTGAEAAAI-VNNNAAAVLLTLNAL---------AEGKEVVVSRGELVEGGAFRVPDIIRLAGAKLVEVGT- 140 (395)
T ss_pred HHHHHHhcccchhheee-ECCcHHHHHHHHhhh---------ccCCeEEEEccccccCCCCChhHHHHHcCCEEEEecc-
Confidence 33444555555544433 444554443433332 23556666642 333446788999999998874
Q ss_pred CCCCCCHHHHHHHHhccCCCeEEEE-EecCCC--ceeccccHHHHHHHHHHhCCEEEEecCCccc---ccccCCCCccCC
Q psy7357 113 KDGTIDFSDLETKVKKNKETLSCLM-ITYPST--FGVFEENITDVCELIHEHGGQVYLDGANMNA---QVGLCRPGDYGS 186 (302)
Q Consensus 113 ~~g~iD~~~l~~~i~~~~~~t~~V~-i~~Pn~--~G~~~~di~~I~~ia~~~g~llivD~a~~~~---~~~~~~p~~~ga 186 (302)
.+.....+++.+|. ++|++++ +.++|+ ++.+ +.+++.++||++|+++++|.+.-.- ...+...-..|+
T Consensus 141 -tn~t~~~d~~~AIn---e~ta~llkV~s~~~~f~~~l--~~~~l~~ia~~~~lpvivD~aSg~~v~~e~~l~~~la~Ga 214 (395)
T COG1921 141 -TNRTHLKDYELAIN---ENTALLLKVHSSNYGFTGML--SEEELVEIAHEKGLPVIVDLASGALVDKEPDLREALALGA 214 (395)
T ss_pred -cCcCCHHHHHHHhc---cCCeeEEEEeeccccccccc--cHHHHHHHHHHcCCCEEEecCCccccccccchhHHHhcCC
Confidence 35678999999999 7888777 444553 3334 4788999999999999999764111 111111235689
Q ss_pred cEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCcc
Q psy7357 187 DVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPL 226 (302)
Q Consensus 187 Div~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~~ 226 (302)
|+|++|++|-|+ ||+.|+|+.++++++++...-.
T Consensus 215 DLV~~SgdKllg------GPqaGii~GkKelI~~lq~~~l 248 (395)
T COG1921 215 DLVSFSGDKLLG------GPQAGIIVGKKELIEKLQSHPL 248 (395)
T ss_pred CEEEEecchhcC------CCccceEechHHHHHHHHhhhh
Confidence 999999999775 8999999999999988765444
No 293
>PLN02624 ornithine-delta-aminotransferase
Probab=99.26 E-value=5.9e-10 Score=108.79 Aligned_cols=175 Identities=18% Similarity=0.216 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHh-hcCCC-CCEEEEc-CCCCcccHHHHHhCCC------
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQA-QDAHH-RNVCLIP-VSAHGTNPASAQMAGM------ 104 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~-~g~~~-~d~Vlv~-~~~hg~~~~~~~~~g~------ 104 (302)
+...++.++++++++.+.+ +..++|++|+++++...+.|... +|..+ +.+|+.. ...||.........+-
T Consensus 117 ~~~~~la~~L~~~~~~~~~-~f~~SGseA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~ 195 (474)
T PLN02624 117 DKFPEFAEYLTSMFGYDMV-LPMNTGAEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRG 195 (474)
T ss_pred HHHHHHHHHHHhhcCCCeE-EEeCChHHHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCcccccc
Confidence 4556788899999987754 55789999988888877765321 22111 2244443 3467765554332221
Q ss_pred ------EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecc-cc--HHHHHHHHHHhCCEEEEecCCccc
Q psy7357 105 ------SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFE-EN--ITDVCELIHEHGGQVYLDGANMNA 174 (302)
Q Consensus 105 ------~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~-~d--i~~I~~ia~~~g~llivD~a~~~~ 174 (302)
.+..+|. -|++.+++.++++.+++++|+++.+ +++|.+. ++ +++|.++|++||+++|+|+++. +
T Consensus 196 ~~~~~~~~~~~~~-----~d~~~l~~~l~~~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~t-G 269 (474)
T PLN02624 196 FGPLLPGHLKVDF-----GDLDALEKIFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQT-G 269 (474)
T ss_pred CCCCCCCceEeCC-----CCHHHHHHHHHhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-C
Confidence 1223332 2789999999765578999999886 5788764 22 9999999999999999999984 3
Q ss_pred ccc----cC-CCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 175 QVG----LC-RPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 175 ~~~----~~-~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
++. +. .-....+|++++ .|.|+ .|+.++|++++++++++.+
T Consensus 270 ~GrtG~~~a~~~~~i~pDiv~l--sK~lg----gG~~pigav~~~~~i~~~~ 315 (474)
T PLN02624 270 LARTGKMLACDWEEVRPDVVIL--GKALG----GGVIPVSAVLADKDVMLCI 315 (474)
T ss_pred cCcCcchhhHHhcCCCCCEEEe--ccccc----CCCCcceeeeecHHHHhHh
Confidence 321 10 001234688887 47665 4557899999987766544
No 294
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=99.24 E-value=5.6e-10 Score=106.87 Aligned_cols=172 Identities=19% Similarity=0.241 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcC-CCCcccHHHHHhCCCE-------
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPV-SAHGTNPASAQMAGMS------- 105 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~-~~hg~~~~~~~~~g~~------- 105 (302)
+...++.++++++++.+. .+..+||++|+++++..++.+...++..++++|+..+ ..||.........+..
T Consensus 81 ~~~~~la~~l~~~~~~~~-v~~~~sGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~ 159 (406)
T PRK12381 81 EPVLRLAKKLIDATFADR-VFFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFA 159 (406)
T ss_pred HHHHHHHHHHHhhCCCCe-EEEcCCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCC
Confidence 345688899999888764 4567899999889999888764333222455666554 5777765444333311
Q ss_pred -----EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCc-eec---cccHHHHHHHHHHhCCEEEEecCCcccc
Q psy7357 106 -----VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STF-GVF---EENITDVCELIHEHGGQVYLDGANMNAQ 175 (302)
Q Consensus 106 -----v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~-G~~---~~di~~I~~ia~~~g~llivD~a~~~~~ 175 (302)
++.+| ..|++++++.++ +++++|++. | +.. |++ ...+++|.++|++||+++|+|.++ .++
T Consensus 160 ~~~~~~~~~~-----~~d~~~l~~~l~---~~~aaviiE-Pv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~-tG~ 229 (406)
T PRK12381 160 PLPPDIRHAA-----YNDLNSASALID---DQTCAVIVE-PIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQ-TGV 229 (406)
T ss_pred CCCCCeeEeC-----CCCHHHHHHhcc---CCeeEEEEe-CCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchh-hCC
Confidence 22222 248999999997 688888885 5 443 443 226899999999999999999987 233
Q ss_pred cccCCC---Cc--cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 176 VGLCRP---GD--YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 176 ~~~~~p---~~--~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
+-.... .. ..+|+++. .|+++ ||.++|++++++++++.+..
T Consensus 230 gr~G~~~~~~~~~v~pDi~t~--sK~l~-----gG~~ig~~~~~~~~~~~~~~ 275 (406)
T PRK12381 230 GRTGELYAYMHYGVTPDVLTT--AKALG-----GGFPIGAMLTTEKCASVMTV 275 (406)
T ss_pred CCCcchhhhHhhCCCCCEEEe--hhhhh-----CCCceEEEEEcHHHHhhcCC
Confidence 211001 11 23577665 47775 46889999999888776643
No 295
>KOG0633|consensus
Probab=99.24 E-value=1.1e-11 Score=108.67 Aligned_cols=165 Identities=15% Similarity=0.153 Sum_probs=117.0
Q ss_pred hCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCC-CEEEEcCCCCcccHHHHHhCCCEEEEeecCCCCCCCHHHHHHH
Q psy7357 47 TGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHR-NVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFSDLETK 125 (302)
Q Consensus 47 ~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~-d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g~iD~~~l~~~ 125 (302)
-++..+++-.+-|+.-. .-..+|..+ .+| ++|+..+|.|+.|...++..+++|+.+|.+++..+|.|++.+.
T Consensus 82 kpLt~dnic~GvGsDE~--ID~iiR~~c-----~PGkeKIl~cPPtysMY~v~A~iNd~eVvkvpl~pdF~lnvdai~ev 154 (375)
T KOG0633|consen 82 KPLTSDNICVGVGSDEL--IDLIIRCVC-----DPGKEKILDCPPTYSMYVVDAAINDAEVVKVPLNPDFSLNVDAIAEV 154 (375)
T ss_pred CCCCccceEEecCcHHH--HHHHHhhee-----cCCccceeecCCcceeEEEEeecCCceEEEecCCCCccccHHHHHHH
Confidence 35556688888888522 122233322 344 8899999999988888888999999999999999999999999
Q ss_pred HhccCCCeEEEEEecC-CCceeccccHHHHHHHHHH-hCCEEEEecCCc--ccccccCCCCccCCcEEEeCCCcccCCCC
Q psy7357 126 VKKNKETLSCLMITYP-STFGVFEENITDVCELIHE-HGGQVYLDGANM--NAQVGLCRPGDYGSDVSHLNLHKTFCIPH 201 (302)
Q Consensus 126 i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~-~g~llivD~a~~--~~~~~~~~p~~~gaDiv~~~~hK~l~~p~ 201 (302)
++.. ..++++++++| |++|.+. -...|.++..- -|.++++|+|+. .+............++++. |||++..
T Consensus 155 l~~d-s~iK~~F~tSPgNPtg~~i-k~~di~KiLe~p~nglVVvDEAYidFsg~~S~~~lV~kYpNLivl---qTlSKsf 229 (375)
T KOG0633|consen 155 LELD-SKIKCIFLTSPGNPTGSII-KEDDILKILEMPDNGLVVVDEAYIDFSGVESRMKLVKKYPNLIVL---QTLSKSF 229 (375)
T ss_pred Hhcc-ccceEEEEcCCCCCCcccc-cHHHHHHHHhCCCCcEEEEeeeeEeeccccccchHhHhCCceeeh---hhhhhhc
Confidence 9742 47899999999 6999764 24444444433 378888999873 2211111111223577775 6888888
Q ss_pred CCCCCcceeEEEeCCCCCCCCC
Q psy7357 202 GGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 202 ~~gGp~~G~l~~~~~l~~~lpg 223 (302)
|..|-|+|+-+++.++++.|..
T Consensus 230 GLAGiRvG~~~~~~~ia~iln~ 251 (375)
T KOG0633|consen 230 GLAGIRVGYGAFPLSIAEILNR 251 (375)
T ss_pred CcceeEeecccccHHHHHHHHh
Confidence 8999999999999877766533
No 296
>PRK07505 hypothetical protein; Provisional
Probab=99.24 E-value=1.5e-10 Score=110.60 Aligned_cols=128 Identities=18% Similarity=0.177 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHH--HHhCCCEEEEe
Q psy7357 32 YEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPAS--AQMAGMSVEPV 109 (302)
Q Consensus 32 ~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~--~~~~g~~v~~i 109 (302)
..+...++++.+++++|. ..+..++|+.|+++++..++.... .+ ++++.|+.....|++.... ....+.+++.+
T Consensus 89 ~~~~~~~l~~~la~~~~~--~~~~~~sG~~a~~~ai~~~~~~~~-~~-~~~~vi~~~~~~H~s~~~~~~~~~~~~~v~~~ 164 (402)
T PRK07505 89 RSQILKDLEEALSELFGA--SVLTFTSCSAAHLGILPLLASGHL-TG-GVPPHMVFDKNAHASLNILKGICADETEVETI 164 (402)
T ss_pred hhHHHHHHHHHHHHHhCC--CEEEECChHHHHHHHHHHHHhccc-CC-CCCCEEEEchhhhHhHHhhhhhhhcCCeEEEe
Confidence 457889999999999997 345566888777666654332110 00 1233444555677764321 12235678888
Q ss_pred ecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCc
Q psy7357 110 SVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANM 172 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~ 172 (302)
|. .|+++++++++ ++++++++++| |++|.+. ++++|.++|+++|+++|+|+++.
T Consensus 165 ~~-----~d~~~l~~~~~---~~~~~~vl~~p~~~~G~~~-~~~~i~~l~~~~~~~li~DEa~~ 219 (402)
T PRK07505 165 DH-----NDLDALEDICK---TNKTVAYVADGVYSMGGIA-PVKELLRLQEKYGLFLYIDDAHG 219 (402)
T ss_pred CC-----CCHHHHHHHHh---cCCCEEEEEecccccCCcC-CHHHHHHHHHHcCCEEEEECccc
Confidence 76 48999999987 56678888888 4889888 69999999999999999999974
No 297
>KOG1368|consensus
Probab=99.23 E-value=6.3e-11 Score=105.59 Aligned_cols=172 Identities=20% Similarity=0.241 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH---HHHhCCCEEEEee
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA---SAQMAGMSVEPVS 110 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~---~~~~~g~~v~~i~ 110 (302)
.-..++++..++++|-+.. ++..||+.+++.++++-. ..++..|++.+..|-.... +....|..++.+.
T Consensus 56 ~tt~rLE~~vA~l~GKEAg-LFv~SGTmgNllaIm~Hc-------~~rg~eii~gd~~HI~~~E~gg~s~l~gv~~~tv~ 127 (384)
T KOG1368|consen 56 PTTNRLEQRVAELFGKEAG-LFVPSGTMGNLLAIMVHC-------HQRGSEIIVGDRAHIHRYEQGGISQLAGVHVRTVK 127 (384)
T ss_pred ccHHHHHHHHHHHhCccce-eeecccccccHHHHHHHh-------cCCCceEEeccchheeehhccChhhhccceeEeee
Confidence 3457888999999998775 445679887755544422 2578899999988754433 5668889999998
Q ss_pred cCCCCCCCHHHHHHHHhc-----cCCCeEEEEEecC-CCce-ec---cccHHHHHHHHHHhCCEEEEecCCccc-cccc-
Q psy7357 111 VRKDGTIDFSDLETKVKK-----NKETLSCLMITYP-STFG-VF---EENITDVCELIHEHGGQVYLDGANMNA-QVGL- 178 (302)
Q Consensus 111 ~~~~g~iD~~~l~~~i~~-----~~~~t~~V~i~~P-n~~G-~~---~~di~~I~~ia~~~g~llivD~a~~~~-~~~~- 178 (302)
..+||.+|+++||+++.. |.|.|++|.+.|. |.+| .. + .+.+|.++|+++|..+++|+|-.+- ....
T Consensus 128 ~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle-~~~~v~~lak~~glkLH~DGARi~NAavasg 206 (384)
T KOG1368|consen 128 NENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLE-ELDRVKALAKRHGLKLHMDGARIFNAAVASG 206 (384)
T ss_pred eCCCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHH-HHHHHHHHHhccCCeeecchhhhhhHHHHcC
Confidence 888999999999999973 3467899999996 4556 44 4 4778899999999999999986321 1111
Q ss_pred CCCCc--cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCC
Q psy7357 179 CRPGD--YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPF 220 (302)
Q Consensus 179 ~~p~~--~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~ 220 (302)
.+... ..+|-+..-++|.++. |=+.++..+++++++
T Consensus 207 V~vk~i~~~fDSVsiCLSKglgA------PVGSViVG~k~FI~k 244 (384)
T KOG1368|consen 207 VPVKKICSAFDSVSICLSKGLGA------PVGSVIVGSKDFIDK 244 (384)
T ss_pred CCHHHHHHhhhhhhhhhhccCCC------CcccEEEccHHHHHH
Confidence 11111 1357776655676654 545667767666544
No 298
>KOG0256|consensus
Probab=99.23 E-value=1.6e-10 Score=106.96 Aligned_cols=185 Identities=16% Similarity=0.212 Sum_probs=129.0
Q ss_pred CCccCCCCCCCcccccHHHHHHHHHHHHHHHhCC----CeeeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCC
Q psy7357 16 QLTNMHPFIPQDQARGYEQLIGELETDLCEITGY----DKISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVS 90 (302)
Q Consensus 16 ~ft~~~py~p~e~sqG~l~~~~e~~~~l~~l~g~----~~~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~ 90 (302)
.|...--||+ +.|..+...++.+-+.+.-|- |..++...+|+ .++++....+. ++||.-|||.|
T Consensus 110 ~f~~la~fqd---y~Gl~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLa--------dpgdafLvPtP 178 (471)
T KOG0256|consen 110 SFDELAMFQD---YHGLPSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLA--------DPGDAFLVPTP 178 (471)
T ss_pred chhhHhhccc---ccCchHHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhc--------CCCceeeecCC
Confidence 3455566666 678888888877777776663 34456556665 44534333332 79999999999
Q ss_pred CCcccHHH-HHhCCCEEEEeecCC-C-CCCCHHHHHHHHhcc---CCCeEEEEEecC-CCceecc--ccHHHHHHHHHHh
Q psy7357 91 AHGTNPAS-AQMAGMSVEPVSVRK-D-GTIDFSDLETKVKKN---KETLSCLMITYP-STFGVFE--ENITDVCELIHEH 161 (302)
Q Consensus 91 ~hg~~~~~-~~~~g~~v~~i~~~~-~-g~iD~~~l~~~i~~~---~~~t~~V~i~~P-n~~G~~~--~di~~I~~ia~~~ 161 (302)
.||....- .-+.|++++.|.+.. + .+++++++|+++.+. .-++++|+++|| ||.|..- +.+..+...|.++
T Consensus 179 yY~gfdrdl~~rTgveivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~k 258 (471)
T KOG0256|consen 179 YYPGFDRDLRWRTGVEIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRK 258 (471)
T ss_pred CCCcccccceeccCceEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhc
Confidence 88766443 347799999999865 3 489999999999642 357899999999 6999862 2578888889999
Q ss_pred CCEEEEecCCcccccc---c-------CCCCccCCc--EEEeCCCcccCCCCCCCCCcceeEEEeCC
Q psy7357 162 GGQVYLDGANMNAQVG---L-------CRPGDYGSD--VSHLNLHKTFCIPHGGGGPGMGPIGVKSH 216 (302)
Q Consensus 162 g~llivD~a~~~~~~~---~-------~~p~~~gaD--iv~~~~hK~l~~p~~~gGp~~G~l~~~~~ 216 (302)
|+-+|+|+.+..+... + ..+ ++..| -++-++.|-|+.| |-++|.|+...+
T Consensus 259 niHvI~DEIya~sVF~~~~F~Sv~ev~~~~-~~~~~rvHivyslSKD~Glp----GfRvGviYS~ne 320 (471)
T KOG0256|consen 259 NIHVISDEIYAGSVFDKSEFRSVLEVRKDP-HLDPDRVHIVYSLSKDFGLP----GFRVGVIYSNNE 320 (471)
T ss_pred ceEEEeehhhcccccCccCceEHHHHhhcc-ccCCCcEEEEEEeccccCCC----ceEEEEEEecCh
Confidence 9999999976433221 1 111 11122 2445568999888 889999998753
No 299
>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.
Probab=99.22 E-value=4.2e-12 Score=117.37 Aligned_cols=167 Identities=25% Similarity=0.308 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCC---c-c--cHHHHHhCCCEEEEee
Q psy7357 37 GELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAH---G-T--NPASAQMAGMSVEPVS 110 (302)
Q Consensus 37 ~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~h---g-~--~~~~~~~~g~~v~~i~ 110 (302)
..+++.+|+++|++.+.+ .++.+.|. ++++..+ .++.+|+++...- | + .+...+..|.++++|.
T Consensus 50 ~~v~~ll~~ltgAeaA~V-vNnnaAAv---~L~l~~l------a~~~EvIvsRGelVeiGgsFRip~vm~~sGa~lvEVG 119 (367)
T PF03841_consen 50 AHVEELLCELTGAEAALV-VNNNAAAV---LLALNTL------AKGKEVIVSRGELVEIGGSFRIPDVMRQSGARLVEVG 119 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccc-cccccccc---ccccccc------ccccccccccccccccccccccccccccccccccccc
Confidence 456778999999987644 34444433 3333222 2466788887532 2 2 2446677899999888
Q ss_pred cCCCCCCCHHHHHHHHhccCCCeEEEEEecCC-C--ceec-cccHHHHHHHHHHhCCEEEEecCCc----cccccc----
Q psy7357 111 VRKDGTIDFSDLETKVKKNKETLSCLMITYPS-T--FGVF-EENITDVCELIHEHGGQVYLDGANM----NAQVGL---- 178 (302)
Q Consensus 111 ~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~--~G~~-~~di~~I~~ia~~~g~llivD~a~~----~~~~~~---- 178 (302)
.. ....+++++++|+ ++|++++-.+++ + .|+- +++++++.+++|+||+++++|...- .+..++
T Consensus 120 tt--N~t~~~Dye~AI~---e~Ta~ll~Vh~Sn~~i~GFt~~~~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep 194 (367)
T PF03841_consen 120 TT--NRTHLSDYEKAIT---ENTAALLKVHTSNFRIQGFTGEVSLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEP 194 (367)
T ss_dssp ----------------------------------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT------
T ss_pred cc--ccccccccccccc---ccccccccccccccccccccccccHHHHHHHHhhcCCcEEEECCCCCCcCcccccCcccc
Confidence 63 3567889999999 899999877764 3 2433 3479999999999999999997641 111111
Q ss_pred --CCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCC
Q psy7357 179 --CRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVH 224 (302)
Q Consensus 179 --~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~ 224 (302)
...-..|+|+|++|+.|-|+ ||+.|+++.++++++++...
T Consensus 195 ~v~~~~~~GaDlV~fSGdKlLG------GPQaGiI~Gkk~lI~~lk~~ 236 (367)
T PF03841_consen 195 TVQEYLAAGADLVTFSGDKLLG------GPQAGIIVGKKELIEKLKKH 236 (367)
T ss_dssp ----CCCCT-SEEEEETTSSSS------S-S-EEEEEEHHHHHHHHHH
T ss_pred HHHHHhhcCCCEEEEECCCcCC------CCCeEEEEeCHHHHHHHhhC
Confidence 11235689999999999775 89999999999999887643
No 300
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=99.22 E-value=5e-10 Score=106.36 Aligned_cols=178 Identities=23% Similarity=0.304 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCC-CCcccHHHHHhCCCEEEE---
Q psy7357 33 EQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVS-AHGTNPASAQMAGMSVEP--- 108 (302)
Q Consensus 33 l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~-~hg~~~~~~~~~g~~v~~--- 108 (302)
.+...+++++++++.|.+.+ +..++|++|+++++.+++.+....+ ..+++|++.++ .||.........+.....
T Consensus 80 ~~~~~~la~~l~~~~~~~~v-~~~~gg~eA~~~al~~a~~~~~~~~-~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~ 157 (396)
T PRK02627 80 IEPQEELAEKLVELSGMDKV-FFCNSGAEANEAAIKLARKYGHKKG-IEKPEIITAENSFHGRTLATLSATGQPKYQEGF 157 (396)
T ss_pred CHHHHHHHHHHHhhcCCCEE-EECCCcHHHHHHHHHHHHHHhcccC-CCCCeEEEECCCcCcccHHHHHhcCCccccccC
Confidence 45677888999998888654 4567788887777777665421111 11266777665 455544433333322211
Q ss_pred eecCCCC----CCCHHHHHHHHhccCCCeEEEEEecC-CCceecc---ccHHHHHHHHHHhCCEEEEecCCc-ccccc-c
Q psy7357 109 VSVRKDG----TIDFSDLETKVKKNKETLSCLMITYP-STFGVFE---ENITDVCELIHEHGGQVYLDGANM-NAQVG-L 178 (302)
Q Consensus 109 i~~~~~g----~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~---~di~~I~~ia~~~g~llivD~a~~-~~~~~-~ 178 (302)
.+...+. ..|++++++++. +++++|+++.+ |++|... ..+++|.++|+++|+++|+|.++. ....+ .
T Consensus 158 ~~~~~~~~~~~~~d~~~l~~~i~---~~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~ 234 (396)
T PRK02627 158 EPLVEGFIYVPFNDIEALKAAIT---DKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKL 234 (396)
T ss_pred CCCCCCceEeCCCCHHHHHHhcC---CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCce
Confidence 1211111 128999999996 78999999876 4667421 158999999999999999999874 11111 0
Q ss_pred CCCCcc--CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 179 CRPGDY--GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 179 ~~p~~~--gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
...... ..|++++ .|+++ +|.++|++++++++++.+.
T Consensus 235 ~~~~~~~~~pdi~t~--sK~~~-----~G~rig~~~~~~~~~~~~~ 273 (396)
T PRK02627 235 FAYQHYGIEPDIMTL--AKGLG-----GGVPIGAVLAKEKVADVFT 273 (396)
T ss_pred eeehhcCCCCCEEEE--cchhh-----CCcccEEEEEcHHHHhccC
Confidence 011112 3577765 47765 3689999999988776664
No 301
>PRK03715 argD acetylornithine transaminase protein; Provisional
Probab=99.21 E-value=1.3e-09 Score=103.92 Aligned_cols=179 Identities=17% Similarity=0.170 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcC-CCCcccHHHHHhCCCEE---EEe
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPV-SAHGTNPASAQMAGMSV---EPV 109 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~-~~hg~~~~~~~~~g~~v---~~i 109 (302)
+...++.+++++..+.+. .++.+||++|+++++..++.+....+ ..+++|+..+ ..||.........+... ...
T Consensus 78 ~~~~~la~~l~~~~~~~~-v~f~~SGseA~e~Aik~ar~~~~~~~-~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~ 155 (395)
T PRK03715 78 EPMAKLAGLLTQHSCFDK-VFFANSGAEANEGAIKLARKWGRKHK-NGAYEIITFDHSFHGRTLATMSASGKPGWDTIFA 155 (395)
T ss_pred HHHHHHHHHHhhccCCCE-EEEeCCcHHHHHHHHHHHHHHhhccC-CCCcEEEEECCCcCCChHHHHhhcCCcccccCCC
Confidence 345566677776665554 45678999998899888886632111 2334555444 67887766554444221 111
Q ss_pred ecCCC----CCCCHHHHHHHHhccCCCeEEEEEecCC-Cceecccc---HHHHHHHHHHhCCEEEEecCCcccccccCCC
Q psy7357 110 SVRKD----GTIDFSDLETKVKKNKETLSCLMITYPS-TFGVFEEN---ITDVCELIHEHGGQVYLDGANMNAQVGLCRP 181 (302)
Q Consensus 110 ~~~~~----g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~~d---i~~I~~ia~~~g~llivD~a~~~~~~~~~~p 181 (302)
|...+ ...|++++++.++ +++++|+++... ..|.+.++ +++|.++|+++|+++|+|+++. +++.....
T Consensus 156 ~~~~~~~~~~~~d~~~l~~~l~---~~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~t-G~GRtG~~ 231 (395)
T PRK03715 156 PQVPGFPKAELNDIASVEKLIT---DKTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQT-GCGRTGTL 231 (395)
T ss_pred CCCCCceeeCCchHHHHHHHcC---CCceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCCCcch
Confidence 11111 1258999999997 678888887543 55766522 9999999999999999999875 33211110
Q ss_pred ---C--ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCc
Q psy7357 182 ---G--DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHP 225 (302)
Q Consensus 182 ---~--~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~ 225 (302)
. ...+|+++. .|.|+. |-.+|.+++++++....++.+
T Consensus 232 ~a~~~~gv~PDi~t~--gK~lg~-----G~p~~av~~~~~i~~~~~~~~ 273 (395)
T PRK03715 232 FAYELSGIEPDIMTL--GKGIGG-----GVPLAALLAKAEVAVFEAGDQ 273 (395)
T ss_pred hhHhhcCCCCceeee--hhhhhC-----CcceEEEEEccccccccCCCc
Confidence 1 124698887 488862 334777788888765555543
No 302
>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional
Probab=99.19 E-value=1.2e-09 Score=103.09 Aligned_cols=157 Identities=15% Similarity=0.233 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcC-CCCcccHHHHHh-------CCCE
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPV-SAHGTNPASAQM-------AGMS 105 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~-~~hg~~~~~~~~-------~g~~ 105 (302)
+...++.++++++++.+.+ +..+||++|+++++..++.+ +.+++|+..+ ..||........ .++.
T Consensus 66 ~~~~~la~~l~~~~~~~~v-~~~~SGseA~e~Alklar~~------~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~ 138 (364)
T PRK04013 66 EEKEEMLEELSKWVNYEYV-YMGNSGTEAVEAALKFARLY------TGRKEIIAMTNAFHGRTMGALSATWKPKYREDFE 138 (364)
T ss_pred HHHHHHHHHHHhhcCCCEE-EEeCchHHHHHHHHHHHHHH------hCCCEEEEECCccccCchhhccCCCCcccccCCC
Confidence 4567788889999887754 55789999988888888765 3446666555 567766443331 1121
Q ss_pred -----EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecccc---HHHHHHHHHHhCCEEEEecCCccccc
Q psy7357 106 -----VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEEN---ITDVCELIHEHGGQVYLDGANMNAQV 176 (302)
Q Consensus 106 -----v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~d---i~~I~~ia~~~g~llivD~a~~~~~~ 176 (302)
+..+|. -|++++++.+. +++++|++..- ...|.+.+| ++++.++|+++|+++|.|+++. +
T Consensus 139 p~~~~~~~~~~-----~d~~~l~~~i~---~~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~t-G-- 207 (364)
T PRK04013 139 PLVPGFKHIPF-----NDVEAAKEAIT---KETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQS-G-- 207 (364)
T ss_pred CCCCCcEEecC-----CCHHHHHHHhc---CCcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-c--
Confidence 223332 27889999997 78999988763 345666546 9999999999999999999874 1
Q ss_pred ccCCCC--------ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCC
Q psy7357 177 GLCRPG--------DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHL 217 (302)
Q Consensus 177 ~~~~p~--------~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l 217 (302)
+ +.| ...+|+++. .|.++. |-.+|.++.++++
T Consensus 208 -~-RtG~~~a~~~~gv~PDiv~~--gK~lgg-----G~P~~a~~~~~~~ 247 (364)
T PRK04013 208 -L-RTGKFLAIEHYKVEPDIVTM--GKGIGN-----GVPVSLTLTNFDV 247 (364)
T ss_pred -C-CCCchhHHHhcCCCCCEEEe--cccccC-----CceeEEEEecccc
Confidence 1 222 234799998 487762 4346667777665
No 303
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=99.19 E-value=1.4e-09 Score=104.93 Aligned_cols=175 Identities=19% Similarity=0.185 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHh-CCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCC--------C
Q psy7357 34 QLIGELETDLCEIT-GYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAG--------M 104 (302)
Q Consensus 34 ~~~~e~~~~l~~l~-g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g--------~ 104 (302)
+...++.++|++++ +.....++.+||++|+++++...+.+. ++.+.|.+....||.+.......+ +
T Consensus 86 ~~~~~la~~L~~~~~~~~~~v~f~~SGseA~e~AlklAr~~t-----gr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~ 160 (433)
T PRK08117 86 ESILKLAEELAEITPGGLDCFFFSNSGAEAIEGALKLAKHVT-----KRPYIISFTGCFHGRTLGALSVTTSKSKYRKYY 160 (433)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHhc-----CCCeEEEECCCcCCcCHHHHhhcCCCccccccC
Confidence 45678888999988 322234567899999888888777651 233444455567887755432111 1
Q ss_pred -----EEEEeecCCCCC------------CCHHHHHHHHhc--cCCCeEEEEEecC-CCceecccc----HHHHHHHHHH
Q psy7357 105 -----SVEPVSVRKDGT------------IDFSDLETKVKK--NKETLSCLMITYP-STFGVFEEN----ITDVCELIHE 160 (302)
Q Consensus 105 -----~v~~i~~~~~g~------------iD~~~l~~~i~~--~~~~t~~V~i~~P-n~~G~~~~d----i~~I~~ia~~ 160 (302)
.+..+|...... -|++++++.+++ .++++++|++..- +..|.+. + ++++.++|++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~-~~~~~l~~l~~lc~~ 239 (433)
T PRK08117 161 QPLLGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIV-PPKSFLKKLREICDR 239 (433)
T ss_pred CCCCCCcEEeCCCccccccccCchhHHHHHHHHHHHHHHHhccCCCcEEEEEECCeeCCCCCcc-CCHHHHHHHHHHHHH
Confidence 134444421111 267778888763 2356778777642 4557765 4 9999999999
Q ss_pred hCCEEEEecCCcccccccCCC---Ccc--CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 161 HGGQVYLDGANMNAQVGLCRP---GDY--GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 161 ~g~llivD~a~~~~~~~~~~p---~~~--gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
||+++|+|+++. +++..... ..+ .+|++++ .|+++ +|..+|++++++++++.+.
T Consensus 240 ~g~llI~DEv~t-G~gr~G~~~~~~~~gv~pDi~t~--sK~lg-----~G~pigav~~~~~i~~~~~ 298 (433)
T PRK08117 240 HGILLIFDEVQT-GFGRTGEWFAAQTFGVVPDIMTI--AKGIA-----SGLPLSAVVASKELMEQWP 298 (433)
T ss_pred cCCEEEEecchh-ccCccccchhHhhcCCCCCEeeh--hhhcc-----CCCcceeEEEcHHHHhhcc
Confidence 999999999875 33211111 122 2577655 57775 3567889999988776553
No 304
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=99.18 E-value=4e-09 Score=100.91 Aligned_cols=178 Identities=20% Similarity=0.235 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHhCCC--eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHh--------CC
Q psy7357 34 QLIGELETDLCEITGYD--KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQM--------AG 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~--~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~--------~g 103 (302)
+..-++.++|.+++.-+ ...+..++||.|+++++...|.+- ++...|......||......+. .|
T Consensus 99 e~~v~~ae~L~~~~p~~~~~~~~f~~sGaeA~E~AiKiAr~~T-----gr~~viaf~~afHG~T~galslT~~~~~~~~~ 173 (447)
T COG0160 99 EPYVELAEKLTALAPGSGLKKVFFGNSGAEAVEAAIKIARAYT-----GRPGVIAFDGAFHGRTLGALSLTGSKPPYKAG 173 (447)
T ss_pred hhHHHHHHHHHHhCCcccCCeEEecCCcHHHHHHHHHHHHHHh-----CCCcEEEECCcccccchhhHHhccCccccccC
Confidence 56677888888887652 235667899999889999888762 2344555556678876554331 11
Q ss_pred -----CEEEEeecCCC--C----------CCCHHHHHHHHhc---cCCCeEEEEEecC-CCceeccc---cHHHHHHHHH
Q psy7357 104 -----MSVEPVSVRKD--G----------TIDFSDLETKVKK---NKETLSCLMITYP-STFGVFEE---NITDVCELIH 159 (302)
Q Consensus 104 -----~~v~~i~~~~~--g----------~iD~~~l~~~i~~---~~~~t~~V~i~~P-n~~G~~~~---di~~I~~ia~ 159 (302)
-.|..+|.... + .-..+.+++.+.. ...+++++++..- ..-|++.+ -++++.++|+
T Consensus 174 ~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~ 253 (447)
T COG0160 174 FGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCR 253 (447)
T ss_pred CCCCCCCeEEecCCccccCcccCchhhhhHHHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHH
Confidence 23777776431 1 1124446665532 2246788888753 46677743 3899999999
Q ss_pred HhCCEEEEecCCcccccccCCCCc------c--CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCccc
Q psy7357 160 EHGGQVYLDGANMNAQVGLCRPGD------Y--GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLS 227 (302)
Q Consensus 160 ~~g~llivD~a~~~~~~~~~~p~~------~--gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~~~ 227 (302)
+||+++|+|.+|. +.+ +.|. + .+||++.+ |.++ ||-.+|.+..+++++..-||...+
T Consensus 254 ~~gillI~DEVQt-G~G---RTG~~fa~E~~gv~PDivt~a--K~ig-----~G~Pl~avv~r~ei~~~~~g~~~~ 318 (447)
T COG0160 254 EHGILLIADEVQT-GFG---RTGKMFAFEHFGVEPDIVTLA--KSLG-----GGLPLSAVVGRAEIMDWPPGGHGG 318 (447)
T ss_pred HcCCEEEEecccc-CCC---ccccchhhhhcCCCCCEEEec--cccc-----CCCceeEEeccHHhcccCCcccCC
Confidence 9999999999983 221 2222 2 37999994 8886 366788899999998877776654
No 305
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.14 E-value=9.4e-10 Score=105.89 Aligned_cols=181 Identities=14% Similarity=0.177 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHhC--CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcC-CCCcccHHHHHhCC-------
Q psy7357 34 QLIGELETDLCEITG--YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPV-SAHGTNPASAQMAG------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g--~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~-~~hg~~~~~~~~~g------- 103 (302)
+...++.++|++++. ++. .++.+||++|+++++...|.|...++...+.+||..+ ..||.+.......+
T Consensus 85 ~~~~~la~~l~~~~p~~~~~-v~f~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~ 163 (423)
T PRK05964 85 EPAERLAQRLVALTPGGLDH-VFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHAL 163 (423)
T ss_pred HHHHHHHHHHHHhCCCCCCE-EEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCcccccc
Confidence 445678888888874 444 4557899999889999888876544433455655544 56776644332111
Q ss_pred -----CEEEEeecCCC--CCCCHHHHHHHHhccCCCeEEEEEec-C-CCceecc---ccHHHHHHHHHHhCCEEEEecCC
Q psy7357 104 -----MSVEPVSVRKD--GTIDFSDLETKVKKNKETLSCLMITY-P-STFGVFE---ENITDVCELIHEHGGQVYLDGAN 171 (302)
Q Consensus 104 -----~~v~~i~~~~~--g~iD~~~l~~~i~~~~~~t~~V~i~~-P-n~~G~~~---~di~~I~~ia~~~g~llivD~a~ 171 (302)
..+..+|+..+ ...+++++++.++++.+++++|++.. . +..|+.. +.+++|.++|+++|+++|+|+++
T Consensus 164 ~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l~~~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~ 243 (423)
T PRK05964 164 YTPLLFEQVTAPFPPDGYEQATLDALEALLEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIA 243 (423)
T ss_pred ccCcCCCCEEeCCCcchhHHHHHHHHHHHHHhCCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechh
Confidence 12334444221 11238889999976657888888764 2 3456542 14999999999999999999987
Q ss_pred cccccccCCC-----CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 172 MNAQVGLCRP-----GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 172 ~~~~~~~~~p-----~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
. +++..... ....+|+++. .|+|+ .|+-.+|.+++++++.+.+.
T Consensus 244 t-g~gr~G~~~a~~~~~v~pDi~~~--~K~l~----gG~~p~~av~~~~~i~~~~~ 292 (423)
T PRK05964 244 T-GFGRTGTLFACEQAGVSPDIMCL--SKGLT----GGYLPLAATLCTAEIFEAFY 292 (423)
T ss_pred h-CCCcCcchhHHHhcCCCCCeeee--ehhhh----cCcccceEEEEcHHHHHhhh
Confidence 3 23211011 1124688877 48885 22346888999988777653
No 306
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=99.14 E-value=3.2e-09 Score=102.40 Aligned_cols=168 Identities=23% Similarity=0.261 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHhC-CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEE-cCCCCcccHHHHHhCCCE-------
Q psy7357 35 LIGELETDLCEITG-YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLI-PVSAHGTNPASAQMAGMS------- 105 (302)
Q Consensus 35 ~~~e~~~~l~~l~g-~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv-~~~~hg~~~~~~~~~g~~------- 105 (302)
...++.++|++++. ++. .++.++|++|+++++...|.| ..+++|+. ....||.+.......+..
T Consensus 94 ~~~~la~~l~~~~p~~~~-v~f~~sGseA~e~AlklAr~~------tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~ 166 (428)
T PRK12389 94 LEIEFAKMLKEAIPSLEK-VRFVNSGTEAVMTTIRVARAY------TGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTP 166 (428)
T ss_pred HHHHHHHHHHHhCCCCcE-EEEeCCHHHHHHHHHHHHHHh------hCCCEEEEECCCcCCChHHHHHhcCCcccccCCC
Confidence 34567777777764 443 456789999988888888876 33455554 455788665544322211
Q ss_pred ------------EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecccc----HHHHHHHHHHhCCEEEEe
Q psy7357 106 ------------VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEEN----ITDVCELIHEHGGQVYLD 168 (302)
Q Consensus 106 ------------v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~d----i~~I~~ia~~~g~llivD 168 (302)
+..+|. -|++.+++.++++++++++|+++.- +..|.+. + +++|.++|+++|+++|+|
T Consensus 167 ~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~~~~~vaavi~EPv~g~~G~~~-p~~~yl~~l~~lc~~~g~llI~D 240 (428)
T PRK12389 167 DSAGVPKSIAQEVITVPF-----NDIEALKEALDKWGDEVAAVLVEPIVGNFGIVE-PKPGFLEAVNELAHEAGALVIYD 240 (428)
T ss_pred CCCCCCCcccCceEEcCC-----CCHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEE
Confidence 111111 2789999999866677888888752 4567765 4 999999999999999999
Q ss_pred cCCccccccc---CCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 169 GANMNAQVGL---CRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 169 ~a~~~~~~~~---~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+++.--..+. ..--...+|+++. .|.++ ||-.+|.+++++++++.+.
T Consensus 241 EV~tG~Rt~~~~a~~~~gv~PDivt~--gK~lg-----gG~Pi~av~~~~~i~~~~~ 290 (428)
T PRK12389 241 EVITAFRFMYGGAQDLLGVEPDLTAL--GKIIG-----GGLPIGAYGGRKDIMEQVA 290 (428)
T ss_pred ccccccccCcchhhHHhCCCCCeeee--chhhc-----CCCceeEEeEHHHHHhhhc
Confidence 9874111110 0001124799887 48775 2444677788888877663
No 307
>PLN02452 phosphoserine transaminase
Probab=99.13 E-value=2.2e-10 Score=108.06 Aligned_cols=166 Identities=15% Similarity=0.119 Sum_probs=109.6
Q ss_pred cccHHHHHHHHHHHHHHHhCCCe---eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcC-CCCcccH-HHHHhCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYDK---ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPV-SAHGTNP-ASAQMAG 103 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~---~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~-~~hg~~~-~~~~~~g 103 (302)
+.-+.+++.++++.|+++++.+. +.+..++|+.+.+++.+.+. .+++++++.. ..||... ..++..|
T Consensus 47 s~~f~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~~ea~~~nl~--------~~~~~~l~~~~G~fg~r~~~~a~~~g 118 (365)
T PLN02452 47 GKEFLSIIQKAEADLRELLDIPDNYEVLFLQGGASTQFAAIPLNLC--------KPGDKADFVVTGSWSKKAAKEAKKYC 118 (365)
T ss_pred chHHHHHHHHHHHHHHHHhCCCCCceEEEEeCccHHHHHHHHHhcC--------CCCCeEEEEECCHHHHHHHHHHHHhC
Confidence 45677899999999999999853 34455677777767777665 4566655554 3444332 2566777
Q ss_pred CEEEEeecCCCC---CCCHHHHHHHHhccCCCeEEEEEecC-CCcee-ccccHHHHHHHHHHhCCEEEEecCCccccccc
Q psy7357 104 MSVEPVSVRKDG---TIDFSDLETKVKKNKETLSCLMITYP-STFGV-FEENITDVCELIHEHGGQVYLDGANMNAQVGL 178 (302)
Q Consensus 104 ~~v~~i~~~~~g---~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~-~~~di~~I~~ia~~~g~llivD~a~~~~~~~~ 178 (302)
...+.....+.. ..|+++++. + ++.+.|.+++- +.+|+ +. |++++.+ +++++|+++.++...+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~v~~~hnETstGv~~~-~~~~i~~------~~lvVDa~Ss~g~~pi 186 (365)
T PLN02452 119 KTNVIASGKDEKYTKIPSVSEWEL--T---PDAKFVHICANETIHGVEFK-DYPDVGN------VPLVADMSSNFLSKPV 186 (365)
T ss_pred CCcEEEecCCCCCCCCCChHHcCC--C---CCCcEEEECCCCCCCcEecC-cccccCC------CeEEEECCccccCccc
Confidence 644433222222 457766522 2 45666776663 47899 47 7888753 7899999875554443
Q ss_pred CCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 179 CRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 179 ~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
+..++++|+ .++||.|+ | ||+|+++++++++++++.
T Consensus 187 -dv~~~~v~~--~saqK~lG-P-----~Gl~~v~vr~~~l~~~~~ 222 (365)
T PLN02452 187 -DVSKYGVIY--AGAQKNVG-P-----SGVTIVIIRKDLIGNARP 222 (365)
T ss_pred -CHHHcCEEE--EecccccC-C-----CCeEEEEEcHHHHhhccc
Confidence 456676655 57799885 5 689999999988776643
No 308
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=99.13 E-value=6.7e-09 Score=99.97 Aligned_cols=176 Identities=14% Similarity=0.148 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHhCCC--eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHHHHHhCC-------
Q psy7357 34 QLIGELETDLCEITGYD--KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPASAQMAG------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~--~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~~~~~~g------- 103 (302)
+...++.+++++++... ...++.+||++|+++++...+.+ +.+.+|+.. ...||.+.......+
T Consensus 83 ~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~------tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~ 156 (421)
T PRK09792 83 ESYVTLAEKINALAPVSGQAKTAFFTTGAEAVENAVKIARAH------TGRPGVIAFSGGFHGRTYMTMALTGKVAPYKI 156 (421)
T ss_pred HHHHHHHHHHHHhCCCCCCceEEEeCChHHHHHHHHHHHHHh------cCCCeEEEECCCcCCccHHHHhhcCCCccccc
Confidence 34457777888876422 23456679999988888887765 344555544 457887654433221
Q ss_pred -C-----EEEEeecCC--CCC---CCHHHHHHHHhc--cCCCeEEEEEecC-CCceecccc---HHHHHHHHHHhCCEEE
Q psy7357 104 -M-----SVEPVSVRK--DGT---IDFSDLETKVKK--NKETLSCLMITYP-STFGVFEEN---ITDVCELIHEHGGQVY 166 (302)
Q Consensus 104 -~-----~v~~i~~~~--~g~---iD~~~l~~~i~~--~~~~t~~V~i~~P-n~~G~~~~d---i~~I~~ia~~~g~lli 166 (302)
+ .+..+|+.. ++. -|++.+++.+++ ..+++++|+++-- ++.|+..++ +++|.++|+++|+++|
T Consensus 157 ~~~~~~~~~~~v~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI 236 (421)
T PRK09792 157 GFGPFPGSVYHVPYPSDLHGISTQDSLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMI 236 (421)
T ss_pred CCCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence 1 134444422 121 245788888864 2356788877642 466764324 8999999999999999
Q ss_pred EecCCc-cccccc-CCCCc--cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 167 LDGANM-NAQVGL-CRPGD--YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 167 vD~a~~-~~~~~~-~~p~~--~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+|.++. ++..+. ..... ...|++++ .|+++ ||.++|++++++++++.+.
T Consensus 237 ~DEv~tg~gr~G~~~a~~~~~~~pDi~t~--gK~l~-----~G~pigav~~~~~i~~~~~ 289 (421)
T PRK09792 237 ADEVQSGFARTGKLFAMDHYADKPDLMTM--AKSLA-----GGMPLSGVVGNANIMDAPA 289 (421)
T ss_pred EeccccCCCCCCchhHHHhcCCCCcEEEe--ehhhc-----CCCceEEEEEcHHHHhccC
Confidence 999864 111110 00011 24688877 58886 3578999999988776654
No 309
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.11 E-value=3.5e-09 Score=102.73 Aligned_cols=180 Identities=13% Similarity=0.121 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHhCCC-eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHHHHHhCC-------C
Q psy7357 34 QLIGELETDLCEITGYD-KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPASAQMAG-------M 104 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~-~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~~~~~~g-------~ 104 (302)
+...++.++++++++-+ ...++.+|||+|+++++...+.++..++...+.+|+.. ...||.+.......| +
T Consensus 97 ~~~~~lAe~L~~~~p~~~~~v~f~~sGseAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~ 176 (453)
T PRK06943 97 EPAIELAERLAALTGGTLGHAFFASDGASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFKDAY 176 (453)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhccc
Confidence 34567888888888643 23456789999988888887776544443334555554 457887654332221 1
Q ss_pred -----EEEEeecCCC-C-----------CCCHHHHHHHHhccCCCeEEEEEec-C-CCceeccc---cHHHHHHHHHHhC
Q psy7357 105 -----SVEPVSVRKD-G-----------TIDFSDLETKVKKNKETLSCLMITY-P-STFGVFEE---NITDVCELIHEHG 162 (302)
Q Consensus 105 -----~v~~i~~~~~-g-----------~iD~~~l~~~i~~~~~~t~~V~i~~-P-n~~G~~~~---di~~I~~ia~~~g 162 (302)
.+..+|.... + .-|++++++.++++.+++++|+++- . ...|++.+ -++++.++|+++|
T Consensus 177 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~g 256 (453)
T PRK06943 177 DPLIRHAHVVASPDARGARPGETAADVAARALADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYG 256 (453)
T ss_pred ccCCCCCEEECCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcC
Confidence 1333443211 1 0146788888876667899999875 2 34566532 4899999999999
Q ss_pred CEEEEecCCcccccccCCC---C--ccCCcEEEeCCCcccCCCCCCCC-CcceeEEEeCCCCCCC
Q psy7357 163 GQVYLDGANMNAQVGLCRP---G--DYGSDVSHLNLHKTFCIPHGGGG-PGMGPIGVKSHLAPFL 221 (302)
Q Consensus 163 ~llivD~a~~~~~~~~~~p---~--~~gaDiv~~~~hK~l~~p~~~gG-p~~G~l~~~~~l~~~l 221 (302)
+++|+|+++. +++-.... . ...+|+++. .|.++ || -.+|.+++++++++.+
T Consensus 257 illI~DEV~T-G~GRtG~~fa~~~~gv~PDivt~--gKgl~-----gG~~Pi~av~~~~ei~~~~ 313 (453)
T PRK06943 257 VHLIADEIAV-GCGRTGTFFACEQAGVWPDFLCL--SKGIS-----GGYLPLSLVLSRDAIFAAF 313 (453)
T ss_pred CEEEeechhh-CCCCCcchhHHHhCCCCCCeEee--ehhhc-----cCcccceEEEEcHHHHHhh
Confidence 9999999863 22211000 1 123799999 48876 35 2478888888877655
No 310
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=99.10 E-value=7.7e-09 Score=99.11 Aligned_cols=174 Identities=18% Similarity=0.220 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcC-CCCCEEEEc-CCCCcccHHHHHhCCCE------
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDA-HHRNVCLIP-VSAHGTNPASAQMAGMS------ 105 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~-~~~d~Vlv~-~~~hg~~~~~~~~~g~~------ 105 (302)
+...++.++|+++++.....++.+|||+|+++++...+.|....|. .++++|+.- ...||.+.......+-.
T Consensus 82 ~~~~~la~~L~~~~~~~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~ 161 (408)
T PRK04612 82 APPLKLAEELVTASRFAEKVFLCNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGY 161 (408)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEcCchHHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCC
Confidence 3455778888887753233566889999988999988887644432 124455544 45788765544322211
Q ss_pred ------EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCC-Cceeccc---cHHHHHHHHHHhCCEEEEecCCcccc
Q psy7357 106 ------VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPS-TFGVFEE---NITDVCELIHEHGGQVYLDGANMNAQ 175 (302)
Q Consensus 106 ------v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~~---di~~I~~ia~~~g~llivD~a~~~~~ 175 (302)
+..+|. -|++.+++.++. +++++|++.-.+ ..|++.+ -+++|.++|+++|+++|+|+++. ++
T Consensus 162 ~~~~~~~~~~~~-----~d~~~l~~~~~~--~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~ 233 (408)
T PRK04612 162 EPLPGGFRYVDF-----NDVEALEAAMAG--GDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQC-GM 233 (408)
T ss_pred CCCCCCceEcCC-----CCHHHHHHhhCC--CCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CC
Confidence 122222 388999998862 455555554323 3445542 38999999999999999999874 22
Q ss_pred cccCC-----CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 176 VGLCR-----PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 176 ~~~~~-----p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+.... ....-+|++++ .|+++ ||.++|++++++++.+.+.
T Consensus 234 gr~G~~~a~~~~~~~pdi~t~--~K~l~-----~G~piga~~~~~~~~~~~~ 278 (408)
T PRK04612 234 GRTGTLFAHWQEQVTPDIVTL--AKALG-----GGFPIGAMLAGPKVAETMQ 278 (408)
T ss_pred CcCCchhhhhhcCCCCCEEEE--cchhc-----CCCceEEEEECHHHHhhhc
Confidence 21100 01123577777 48776 3678999998877665543
No 311
>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=99.10 E-value=2e-09 Score=103.79 Aligned_cols=168 Identities=20% Similarity=0.264 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHh-CCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCC-CCcccHHHHHhCC----------
Q psy7357 36 IGELETDLCEIT-GYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVS-AHGTNPASAQMAG---------- 103 (302)
Q Consensus 36 ~~e~~~~l~~l~-g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~-~hg~~~~~~~~~g---------- 103 (302)
..++.+++++++ +.+. .+..++|++|+++++..++.+ ..+++|+..+. .||.........|
T Consensus 92 ~~~la~~L~~~~~~~~~-v~~~~sGseA~e~Aik~a~~~------~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~ 164 (426)
T PRK00062 92 EVELAELVIELVPSIEM-VRMVNSGTEATMSAIRLARGY------TGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPD 164 (426)
T ss_pred HHHHHHHHHHhCCCCCE-EEEecCHHHHHHHHHHHHHHH------hCCCeEEEEcCccCCchhhhhhccCccccccCCCC
Confidence 346777888776 4544 456789999988888887765 23566666655 5665432222111
Q ss_pred --CEEE-----EeecCCCCCCCHHHHHHHHhccCCCeEEEEEec-CCCceecccc----HHHHHHHHHHhCCEEEEecCC
Q psy7357 104 --MSVE-----PVSVRKDGTIDFSDLETKVKKNKETLSCLMITY-PSTFGVFEEN----ITDVCELIHEHGGQVYLDGAN 171 (302)
Q Consensus 104 --~~v~-----~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~-Pn~~G~~~~d----i~~I~~ia~~~g~llivD~a~ 171 (302)
.... .+.+ -..|++++++.++++.+++++|++.. ++..|.+. + +++|.++|+++|+++|+|+++
T Consensus 165 ~~~~~~~~~~~~~~~---~~~d~~~l~~~i~~~~~~~aaiivEpv~~~~G~~~-~~~~~l~~l~~l~~~~~~llI~DEv~ 240 (426)
T PRK00062 165 SPGVPEDFAKHTLTA---PYNDLEAVEELFEEYGDEIAAVIVEPVAGNMGVVP-PKPGFLEGLRELCDEHGALLIFDEVM 240 (426)
T ss_pred CCCCCcccccceEEc---CCCCHHHHHHHHHhCCCcEEEEEEeCCcCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEeech
Confidence 0000 0111 01389999999975556788888874 45678775 4 899999999999999999997
Q ss_pred cccc--cccCCCCcc--CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 172 MNAQ--VGLCRPGDY--GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 172 ~~~~--~~~~~p~~~--gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
. ++ +.......+ ..|++++ +|.|+ +|+.+|++++++++++.+.
T Consensus 241 ~-G~r~g~~~~~~~~~~~pDi~~~--gK~l~-----~G~p~ga~~~~~~i~~~~~ 287 (426)
T PRK00062 241 T-GFRVALGGAQGYYGVTPDLTTL--GKIIG-----GGLPVGAFGGRREIMEQLA 287 (426)
T ss_pred h-ccccCCccHHHHhCCCcchHhh--hhHhh-----CCCcceeeeEHHHHHHhhc
Confidence 4 22 111111112 2576655 58775 3566888898988877663
No 312
>PRK06541 hypothetical protein; Provisional
Probab=99.09 E-value=8.9e-09 Score=100.15 Aligned_cols=180 Identities=15% Similarity=0.154 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHhCCCe-eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEE-cCCCCcccHHHHHhCCC-------
Q psy7357 34 QLIGELETDLCEITGYDK-ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLI-PVSAHGTNPASAQMAGM------- 104 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~-~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv-~~~~hg~~~~~~~~~g~------- 104 (302)
+...++.+++++++..+. ..++.+||++|+++++...+.+....|...+.+|+. ....||.+.......|.
T Consensus 95 ~~~~~la~~l~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~ 174 (460)
T PRK06541 95 PPAIELAERLAALAPGDLNRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPF 174 (460)
T ss_pred HHHHHHHHHHHHhCCCCcCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhcccc
Confidence 455677888888865322 245678999998899988887754333223455554 45678877554332211
Q ss_pred -----EEEEeecCCC-----CCCC--------HHHHHHHHhcc-CCCeEEEEEec-CCCceecccc----HHHHHHHHHH
Q psy7357 105 -----SVEPVSVRKD-----GTID--------FSDLETKVKKN-KETLSCLMITY-PSTFGVFEEN----ITDVCELIHE 160 (302)
Q Consensus 105 -----~v~~i~~~~~-----g~iD--------~~~l~~~i~~~-~~~t~~V~i~~-Pn~~G~~~~d----i~~I~~ia~~ 160 (302)
.+..+|.+.. ..-| ++.+++.++++ ++++++|++.. .+..|.+. + +++|.++|++
T Consensus 175 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~-~~~~yl~~l~~lc~~ 253 (460)
T PRK06541 175 EPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFP-PPPGYFERVREICDR 253 (460)
T ss_pred CCCCCCcEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCcc-CCHHHHHHHHHHHHH
Confidence 1333443210 0012 36788888643 34566666543 25667775 4 9999999999
Q ss_pred hCCEEEEecCCc-cccccc-CCCC--ccCCcEEEeCCCcccCCCCCCCCC-cceeEEEeCCCCCCC
Q psy7357 161 HGGQVYLDGANM-NAQVGL-CRPG--DYGSDVSHLNLHKTFCIPHGGGGP-GMGPIGVKSHLAPFL 221 (302)
Q Consensus 161 ~g~llivD~a~~-~~~~~~-~~p~--~~gaDiv~~~~hK~l~~p~~~gGp-~~G~l~~~~~l~~~l 221 (302)
+|+++|+|+++. ++..+. .... ...+|+++. .|.++ ||. .+|.+++++++++.+
T Consensus 254 ~g~llI~DEV~tGfGR~G~~~a~~~~gv~PDivt~--gK~l~-----~G~~pigav~~~~~i~~~~ 312 (460)
T PRK06541 254 YDVLLVSDEVICAFGRLGEMFGCERFGYVPDIITC--AKGIT-----SGYSPLGAMIASDRLFEPF 312 (460)
T ss_pred cCCEEEEechhhCCCcCchhhhhhhcCCCCCEEEe--ccccc-----CCccceeEEEEcHHHHHHh
Confidence 999999999872 221110 0011 123699986 48776 354 588888887776544
No 313
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=99.09 E-value=3.1e-09 Score=100.51 Aligned_cols=153 Identities=18% Similarity=0.201 Sum_probs=98.9
Q ss_pred eEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHHHHHhCCCEEE------EeecCCCC-CCCHHHHHH
Q psy7357 53 SFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPASAQMAGMSVE------PVSVRKDG-TIDFSDLET 124 (302)
Q Consensus 53 ~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~~~~~~g~~v~------~i~~~~~g-~iD~~~l~~ 124 (302)
.++++||++|+++++..++.+ .++++|++. ...||+........+.+.. .++..... ..|++++++
T Consensus 87 ~~~~~SGseA~~~Al~~ar~~------~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~l~~ 160 (375)
T PRK04260 87 AFFCNSGAEANEAAIKIARKA------TGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYAIFNDLNSVKA 160 (375)
T ss_pred EEEcCccHHHHHHHHHHHHHh------cCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEeCCCCHHHHHH
Confidence 456788988887887777654 345566665 4578766554432222110 00000001 248999999
Q ss_pred HHhccCCCeEEEEEecC-CCceecccc---HHHHHHHHHHhCCEEEEecCCcccccccCCC---Cc--cCCcEEEeCCCc
Q psy7357 125 KVKKNKETLSCLMITYP-STFGVFEEN---ITDVCELIHEHGGQVYLDGANMNAQVGLCRP---GD--YGSDVSHLNLHK 195 (302)
Q Consensus 125 ~i~~~~~~t~~V~i~~P-n~~G~~~~d---i~~I~~ia~~~g~llivD~a~~~~~~~~~~p---~~--~gaDiv~~~~hK 195 (302)
.++ +++++|+++.+ +++|++.++ ++++.++|+++|+++++|+++. +++.-..+ .. ...|++++ +|
T Consensus 161 ~l~---~~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~-g~g~~g~~~~~~~~~~~pdi~t~--sK 234 (375)
T PRK04260 161 LVN---KNTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQT-GMGRTGKLYAFEHYGIEPDIFTL--AK 234 (375)
T ss_pred hcC---CCeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-CCCcccchhhhHhhCCCCCEEEe--cc
Confidence 886 67889999887 477887533 8999999999999999999873 33211111 11 23677765 58
Q ss_pred ccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 196 TFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 196 ~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+|+ +|.++|++++++++.+.+.
T Consensus 235 ~l~-----~G~~ig~~~~~~~~~~~~~ 256 (375)
T PRK04260 235 GLA-----NGVPVGAMLAKSSLGGAFG 256 (375)
T ss_pred ccc-----CCcceEEEEEcHHHHhhcC
Confidence 775 2567999999988776653
No 314
>PRK12403 putative aminotransferase; Provisional
Probab=99.08 E-value=1.2e-08 Score=99.34 Aligned_cols=182 Identities=16% Similarity=0.135 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHHHhCCC-eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEE-cCCCCcccHHHHHhCCCE----
Q psy7357 32 YEQLIGELETDLCEITGYD-KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLI-PVSAHGTNPASAQMAGMS---- 105 (302)
Q Consensus 32 ~l~~~~e~~~~l~~l~g~~-~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv-~~~~hg~~~~~~~~~g~~---- 105 (302)
..+...++.++|+++++.+ ...+..+||++|+++++..++.|....|.+++.+|+. ....||......+..|.+
T Consensus 96 ~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~ 175 (460)
T PRK12403 96 THPAVIELSELLFSLLPGHYSHAIYTNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHE 175 (460)
T ss_pred CCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCccccc
Confidence 3466788999999998733 2345678999998899998888754333222333333 345688765544332221
Q ss_pred -------EEEeecCCC----CC--------CCHHHHHHHHh-ccCCCeEEEEEecC-CCceecccc---HHHHHHHHHHh
Q psy7357 106 -------VEPVSVRKD----GT--------IDFSDLETKVK-KNKETLSCLMITYP-STFGVFEEN---ITDVCELIHEH 161 (302)
Q Consensus 106 -------v~~i~~~~~----g~--------iD~~~l~~~i~-~~~~~t~~V~i~~P-n~~G~~~~d---i~~I~~ia~~~ 161 (302)
+..+|.... .. .+++++++.+. +.++++++|+++.- +.-|.+.++ ++++.++|+++
T Consensus 176 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~ 255 (460)
T PRK12403 176 MGGLIPDVAHIDEPYWYANGGELTPAEFGRRAALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQY 255 (460)
T ss_pred cCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHc
Confidence 333432110 00 12456766663 33357788887642 455776522 99999999999
Q ss_pred CCEEEEecCCcccccccCCC---Cc--cCCcEEEeCCCcccCCCCCCCCC-cceeEEEeCCCCCCC
Q psy7357 162 GGQVYLDGANMNAQVGLCRP---GD--YGSDVSHLNLHKTFCIPHGGGGP-GMGPIGVKSHLAPFL 221 (302)
Q Consensus 162 g~llivD~a~~~~~~~~~~p---~~--~gaDiv~~~~hK~l~~p~~~gGp-~~G~l~~~~~l~~~l 221 (302)
|+++|+|+++. +++-.... .. ..+|+++. .|.++ ||- .+|.+++++++++.+
T Consensus 256 g~lLI~DEV~t-GfGRtG~~~a~e~~gv~PDiv~~--gK~lg-----gG~~Piga~v~~~~i~~~~ 313 (460)
T PRK12403 256 DVLLCADEVIG-GFGRTGEWFAHEHFGFEPDTLSI--AKGLT-----SGYVPMGGLVLSKRIAEAL 313 (460)
T ss_pred CCEEEEecccc-CCCcCchhhhhhhcCCCCCeEEE--ccccc-----ccccceEEEEECHHHHHHH
Confidence 99999999873 22211000 11 23699987 58876 342 355555777766554
No 315
>PRK07046 aminotransferase; Validated
Probab=99.08 E-value=5.4e-09 Score=101.46 Aligned_cols=167 Identities=17% Similarity=0.182 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcC-CCCcccHHHH-Hh-C--------
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPV-SAHGTNPASA-QM-A-------- 102 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~-~~hg~~~~~~-~~-~-------- 102 (302)
+...++.++++++++++.+ .+.+||++|+++++...|.+ +.+++|+.-+ ..||.+.... .. .
T Consensus 115 ~~~~~lAe~l~~~~~~~~v-~F~nSGtEA~e~AlrlAR~~------TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~ 187 (453)
T PRK07046 115 EDAAWVGEELARRFGLPYW-QVATTATDANRFVLRWARAV------TGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPG 187 (453)
T ss_pred HHHHHHHHHHHHHhCCCEE-EEECCHHHHHHHHHHHHHHh------hCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCC
Confidence 3455678888888887654 46789999988888888876 4556666544 5778653322 10 0
Q ss_pred --CC------EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecccc---HHHHHHHHHHhCCEEEEecC
Q psy7357 103 --GM------SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEEN---ITDVCELIHEHGGQVYLDGA 170 (302)
Q Consensus 103 --g~------~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~d---i~~I~~ia~~~g~llivD~a 170 (302)
|. .+..+|. -|++++++.+. ++++++|+++-- ...|.+.++ ++++.++|+++|+++|+|++
T Consensus 188 ~~g~~~~~~~~~~~~~~-----nd~~~l~~~l~--~~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV 260 (453)
T PRK07046 188 LLGQVHDLTATTRVVEF-----NDLAALEAALA--DGDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDET 260 (453)
T ss_pred CCCCCccccCceEeeCC-----CCHHHHHHHhC--CCCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcc
Confidence 11 1122222 38999999995 367888888642 345666433 89999999999999999999
Q ss_pred Cc--ccccccCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 171 NM--NAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 171 ~~--~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
+. .+.++...--...+|+++. .|.++ ||-.+|.++.++++++.+
T Consensus 261 ~tfr~g~Gg~~~~~gv~PDi~t~--gK~lg-----gG~Pi~av~g~~~i~~~~ 306 (453)
T PRK07046 261 HTISSGPGGYTRAHGLEPDFLVV--GKPIA-----GGVPCAVYGFSAELAERA 306 (453)
T ss_pred ccCccCCcchhHHhCCCccceee--hhhhc-----CCCcceeeeehHHHHHHH
Confidence 75 2444321111224799987 58776 344488888898877655
No 316
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=99.07 E-value=8e-09 Score=100.66 Aligned_cols=168 Identities=16% Similarity=0.209 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHhC-CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHHHHH--hCCC------
Q psy7357 35 LIGELETDLCEITG-YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPASAQ--MAGM------ 104 (302)
Q Consensus 35 ~~~e~~~~l~~l~g-~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~~~~--~~g~------ 104 (302)
...++.+++++++. ++. ..+.+||++|+++++...|.| +.+++|+.- ...||.+..... ..+.
T Consensus 140 ~~~~lAe~l~~~~p~~~~-v~f~~SGsEA~e~AlklAR~~------tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~ 212 (474)
T PLN02482 140 LENVLAEMVIDAVPSVEM-VRFVNSGTEACMGVLRLARAY------TGREKIIKFEGCYHGHADSFLVKAGSGVATLGLP 212 (474)
T ss_pred HHHHHHHHHHHhCCCCCE-EEEeCChHHHHHHHHHHHHHh------cCCCEEEEECCccCCCcchhhhhcCCCccccCCC
Confidence 44577788888774 444 446789999988888888876 445565554 457775532111 1110
Q ss_pred -----------EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc---cHHHHHHHHHHhCCEEEEec
Q psy7357 105 -----------SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE---NITDVCELIHEHGGQVYLDG 169 (302)
Q Consensus 105 -----------~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~---di~~I~~ia~~~g~llivD~ 169 (302)
++..+|. -|++++++.++++++++++|++..- +..|.+.+ -++++.++|+++|+++|+|+
T Consensus 213 ~~~g~~~~~~~~~~~~~~-----nd~~~l~~~l~~~~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DE 287 (474)
T PLN02482 213 DSPGVPKAATSATLTAPY-----NDLEAVKKLFEANKGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDE 287 (474)
T ss_pred CCCCCCCCCCCCeEEecC-----CChHHHHHHHHhCCCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEec
Confidence 1111221 2899999999876677888877652 45576642 26789999999999999999
Q ss_pred CCcccc-ccc-CCCCcc--CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 170 ANMNAQ-VGL-CRPGDY--GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 170 a~~~~~-~~~-~~p~~~--gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
++. ++ .+. .....+ .+|++++ .|.++ ||-.+|.+++++++++.+.
T Consensus 288 V~t-GfR~g~~ga~~~~gv~PDi~t~--gK~lg-----gG~Pigav~g~~ei~~~~~ 336 (474)
T PLN02482 288 VMT-GFRIAYGGAQEYFGITPDLTTL--GKVIG-----GGLPVGAYGGRREIMEMVA 336 (474)
T ss_pred ccc-CeecCcchHhHHhCCCCCEEEe--cchhh-----CCCceEEEEEcHHHHHhhc
Confidence 873 22 110 001112 3699877 48776 3444677788888877663
No 317
>PRK07482 hypothetical protein; Provisional
Probab=99.06 E-value=9.2e-09 Score=100.09 Aligned_cols=179 Identities=12% Similarity=0.117 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHhC--CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHHHHHhCC-------
Q psy7357 34 QLIGELETDLCEITG--YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPASAQMAG------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g--~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~~~~~~g------- 103 (302)
+...++.++|++++. ++. .++.+|||+|+++++...+.|...+|...+.+||.- ...||.+.......|
T Consensus 94 ~~~~~lAe~L~~~~p~~~~~-v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~ 172 (461)
T PRK07482 94 EASITLSKRIIDRAPAGMSK-VYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQH 172 (461)
T ss_pred HHHHHHHHHHHHhCCCCcCE-EEEeCchHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhhc
Confidence 556778888888874 444 456789999988999888877543443335565654 457886543322111
Q ss_pred -----CEEEEeecCC--C----C-------CCCHHHHHHHHhc-cCCCeEEEEEecC-CCceeccc---cHHHHHHHHHH
Q psy7357 104 -----MSVEPVSVRK--D----G-------TIDFSDLETKVKK-NKETLSCLMITYP-STFGVFEE---NITDVCELIHE 160 (302)
Q Consensus 104 -----~~v~~i~~~~--~----g-------~iD~~~l~~~i~~-~~~~t~~V~i~~P-n~~G~~~~---di~~I~~ia~~ 160 (302)
-.+..++.+. . + .-|++++++.+++ .++++++|+++-- ...|++.+ -+++|+++|++
T Consensus 173 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~ 252 (461)
T PRK07482 173 FDLPIARVLHTEAPHYYRRADAGMSEEQFSAYCADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKK 252 (461)
T ss_pred cCCCCCCCEEcCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHH
Confidence 1123333221 1 1 0156888888853 3467888888742 34466532 48999999999
Q ss_pred hCCEEEEecCCcccccccCC---C--CccCCcEEEeCCCcccCCCCCCCC-CcceeEEEeCCCCCCC
Q psy7357 161 HGGQVYLDGANMNAQVGLCR---P--GDYGSDVSHLNLHKTFCIPHGGGG-PGMGPIGVKSHLAPFL 221 (302)
Q Consensus 161 ~g~llivD~a~~~~~~~~~~---p--~~~gaDiv~~~~hK~l~~p~~~gG-p~~G~l~~~~~l~~~l 221 (302)
+|+++|+|+++. +++-... - -...+|+++. .|.++ || ..+|.+++++++++.+
T Consensus 253 ~giLlI~DEV~t-GfGRtG~~~a~~~~gv~PDiv~~--gKgl~-----gG~~Pi~av~~~~~i~~~~ 311 (461)
T PRK07482 253 YDILLIADEVVT-GFGRLGSMFGSDHYGIEPDLITV--AKGLT-----SAYAPLSGSIVGEKVWDVL 311 (461)
T ss_pred hCCEEEEecccc-CCCcCcchhhHHhcCCCCCEEEE--ccccc-----cCccccceeeecHHHHHHH
Confidence 999999999863 2211100 0 1124799998 58886 34 3467777787766544
No 318
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=99.06 E-value=1.3e-08 Score=98.54 Aligned_cols=176 Identities=17% Similarity=0.154 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHhCCC-eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHHHHHhCCC-------
Q psy7357 34 QLIGELETDLCEITGYD-KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPASAQMAGM------- 104 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~-~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~~~~~~g~------- 104 (302)
+...++.++|+++++.. ...++.+|||+|+++++...+.| ..+.+|+.- ...||.+.......+.
T Consensus 84 ~~~~~la~~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~------tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~ 157 (443)
T PRK08360 84 VEPLLLAEKLIEIAPGDNPKVSFGLSGSDANDGAIKFARAY------TKRRKILSYLRSYYGSTYGAMSLTGLDFPVRAL 157 (443)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEcCCHHHHHHHHHHHHHHh------cCCCeEEEEeCCcCCcCHHHHHhcCCCcccccC
Confidence 45668888898888653 23556789999988998888876 345555554 4678876543332221
Q ss_pred -----EEEEeecCCCC-----C-------CCHHHHHHHHhc--cCCCeEEEEEecC-CCceeccc---cHHHHHHHHHHh
Q psy7357 105 -----SVEPVSVRKDG-----T-------IDFSDLETKVKK--NKETLSCLMITYP-STFGVFEE---NITDVCELIHEH 161 (302)
Q Consensus 105 -----~v~~i~~~~~g-----~-------iD~~~l~~~i~~--~~~~t~~V~i~~P-n~~G~~~~---di~~I~~ia~~~ 161 (302)
.+..+|..... . -+++.+++.+++ +.+++++|+++-- +++|.+.+ -+++|.++|+++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~ 237 (443)
T PRK08360 158 VGELSDVHYIPYPDCYRCPFGKEPGSCKMECVEYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEH 237 (443)
T ss_pred CCCCCCcEEEeCCccccccccCchhhhHHHHHHHHHHHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHc
Confidence 24444442210 0 234567777753 2367888888732 57786532 389999999999
Q ss_pred CCEEEEecCCc-ccccc-cCCCC--ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 162 GGQVYLDGANM-NAQVG-LCRPG--DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 162 g~llivD~a~~-~~~~~-~~~p~--~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
|+++|+|.++. ++..+ ..... ....|+++. .|+++ +|.++|++++++++++.+.
T Consensus 238 g~llI~DEv~~g~gr~G~~~a~~~~~~~pDiitl--sK~l~-----~G~pigav~~~~~i~~~~~ 295 (443)
T PRK08360 238 GILLVVDEVQSGLGRTGKWFAIEHFGVEPDIITL--GKPLG-----GGLPISATIGRAEIMDSLP 295 (443)
T ss_pred CCEEEEeccccCCCcCccchhhhhcCCCCCEEEe--ccccc-----CCceeEEEEEcHHHHhhhc
Confidence 99999999874 11111 10111 123688876 58776 3678999999988777664
No 319
>PLN00144 acetylornithine transaminase
Probab=99.05 E-value=1.7e-08 Score=96.01 Aligned_cols=174 Identities=18% Similarity=0.247 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCC-------CCEEE-EcCCCCcccHHHHHhCCC-
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHH-------RNVCL-IPVSAHGTNPASAQMAGM- 104 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~-------~d~Vl-v~~~~hg~~~~~~~~~g~- 104 (302)
+...++.++++++++.+. .+..+||++|+++++...+.+...++..+ +.+|+ +....||.+.......+-
T Consensus 57 ~~~~~la~~l~~~~~~~~-v~f~~sGseA~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~ 135 (382)
T PLN00144 57 IPQVELAKRLVASSFADR-VFFCNSGTEANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKE 135 (382)
T ss_pred HHHHHHHHHHHhcCCCCe-EEEeCCcHHHHHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCCCc
Confidence 345678888888876654 45678999998899888887743222111 34444 445678877554432221
Q ss_pred -----------EEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEec-CCCceecc-cc--HHHHHHHHHHhCCEEEEec
Q psy7357 105 -----------SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITY-PSTFGVFE-EN--ITDVCELIHEHGGQVYLDG 169 (302)
Q Consensus 105 -----------~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~-Pn~~G~~~-~d--i~~I~~ia~~~g~llivD~ 169 (302)
.+..+|. -|++++++.+.. +++++|+++- .|+.|++. ++ +++|.++|+++|+++|.|.
T Consensus 136 ~~~~~~~~~~~~~~~~~~-----~d~~~l~~~~~~--~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DE 208 (382)
T PLN00144 136 QYRTPFEPLMPGVTFVEY-----GNLEAARKLIQK--GKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDE 208 (382)
T ss_pred cccccCCCCCCCeEEeCC-----CCHHHHHHhcCC--CCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEec
Confidence 1233332 279999998862 5677777653 14545552 25 8999999999999999999
Q ss_pred CCc-ccccc-cCC--CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 170 ANM-NAQVG-LCR--PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 170 a~~-~~~~~-~~~--p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
++. .+..+ ... .....+|++++ .|+++ +|-++|++++++++++.+.
T Consensus 209 v~tg~gr~g~~~~~~~~~~~PDi~t~--sK~l~-----~G~pig~v~~~~~~~~~~~ 258 (382)
T PLN00144 209 VQCGLGRTGYLWAHEAYGVEPDIMTL--AKPLA-----GGLPIGAVLVTEKVASAIN 258 (382)
T ss_pred hhhCCCccchHhhhhhcCCCCCEEEe--ccccc-----CCcceEEEEEcHHHHhccC
Confidence 863 11111 100 11234688887 58886 3567999999988887664
No 320
>PRK07678 aminotransferase; Validated
Probab=99.05 E-value=1.4e-08 Score=98.61 Aligned_cols=182 Identities=17% Similarity=0.210 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHHHHHhCCC--------
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPASAQMAGM-------- 104 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~~~~~~g~-------- 104 (302)
+...++.++|+++++.....++.+||++|+++++...|.|...+|...+.+|+.- ...||.+.......+.
T Consensus 89 ~~~~~lae~l~~~~~~~~~v~f~~sGseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~ 168 (451)
T PRK07678 89 EPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYE 168 (451)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccccccC
Confidence 3456788889998865544567789999988999988887644442234555554 4578876554332221
Q ss_pred ----EEEEeecCCCCC---------CC---HHHHHHHHh-ccCCCeEEEEEecC-CCceeccc---cHHHHHHHHHHhCC
Q psy7357 105 ----SVEPVSVRKDGT---------ID---FSDLETKVK-KNKETLSCLMITYP-STFGVFEE---NITDVCELIHEHGG 163 (302)
Q Consensus 105 ----~v~~i~~~~~g~---------iD---~~~l~~~i~-~~~~~t~~V~i~~P-n~~G~~~~---di~~I~~ia~~~g~ 163 (302)
.+..+|.+.... .| ++.+++.++ ++.+++++|+++-- ...|.+.+ -+++++++|+++|+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~ 248 (451)
T PRK07678 169 PLAPGFLHVPPPDCYRMPGIESEDIYDLECVKEIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGA 248 (451)
T ss_pred CCCCCCEEeCCCccccccccCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCC
Confidence 123333221110 11 234666775 33467888888752 34566642 28999999999999
Q ss_pred EEEEecCCc-ccccc----cCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 164 QVYLDGANM-NAQVG----LCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 164 llivD~a~~-~~~~~----~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
++|+|+++. ++..+ ... -...+|+++. .|.+++ |+-.+|.+++++++++.+.
T Consensus 249 llI~DEV~tGfGRtG~~~~~~~-~gv~PDivt~--gK~lgg----G~~Pi~av~~~~~i~~~~~ 305 (451)
T PRK07678 249 LLISDEVICGFGRTGKAFGFMN-YGVKPDIITM--AKGITS----AYLPLSATAVKKEIYEAFK 305 (451)
T ss_pred EEEEeehhhcCCcCchhHHHHh-cCCCCCEEEe--eccccc----CCcceeEEEEcHHHHHHHh
Confidence 999999863 22211 111 1123799998 487762 3234888888888776553
No 321
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=99.05 E-value=2e-08 Score=96.68 Aligned_cols=176 Identities=15% Similarity=0.132 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHhCCC--eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEE-EcCCCCcccHHHHHhCC-------
Q psy7357 34 QLIGELETDLCEITGYD--KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCL-IPVSAHGTNPASAQMAG------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~--~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vl-v~~~~hg~~~~~~~~~g------- 103 (302)
+...++.++|++++.-. ...++.++|++|+++++...|.+ ..+.+|+ .....||.+.......+
T Consensus 76 ~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~------tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~ 149 (420)
T TIGR00700 76 EGYVALAEKLNRIAPGSGPKKSVFFNSGAEAVENAVKIARSY------TGRPGVVAFDHGFHGRTNMTMALTAKVMPYKS 149 (420)
T ss_pred hHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHh------cCCCcEEEECCCcCCCcHHHHHhcCCCccccc
Confidence 34567778888887421 23566789999988888887776 2344444 55568887755443211
Q ss_pred -C-----EEEEeecCCCCC-----------CCHHHHHHHHh--ccCCCeEEEEEecC-CCceeccc---cHHHHHHHHHH
Q psy7357 104 -M-----SVEPVSVRKDGT-----------IDFSDLETKVK--KNKETLSCLMITYP-STFGVFEE---NITDVCELIHE 160 (302)
Q Consensus 104 -~-----~v~~i~~~~~g~-----------iD~~~l~~~i~--~~~~~t~~V~i~~P-n~~G~~~~---di~~I~~ia~~ 160 (302)
+ .+..+|...... -+++.+++.+. .+++++++|+++-- ...|.+.+ .+++|.++|++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~ 229 (420)
T TIGR00700 150 GFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCRE 229 (420)
T ss_pred CCCCCCCCcEEeCCCccccccccccchhHHHHHHHHHHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHH
Confidence 1 233344321000 12567777763 34578888888642 35566531 28999999999
Q ss_pred hCCEEEEecCCc-ccccc-cC--CCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 161 HGGQVYLDGANM-NAQVG-LC--RPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 161 ~g~llivD~a~~-~~~~~-~~--~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+|+++|.|.++. .+..+ .. ......+|++++ .|+++ +|.++|++++++++++.+.
T Consensus 230 ~gillI~DEV~tg~gr~g~~~a~~~~~~~pDi~~l--sK~l~-----~G~pig~v~~~~~i~~~~~ 288 (420)
T TIGR00700 230 HGIVFIADEVQTGFARTGAMFACEHEGPEPDLITT--AKSLA-----DGLPLSGVTGRAEIMDAPA 288 (420)
T ss_pred cCCEEEEEecccCCcccchhHHHhhcCCCCCEEEe--ecccc-----CCcceEEEEecHHHHhhcC
Confidence 999999999863 11111 10 111224798886 48776 4789999999988877664
No 322
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=99.04 E-value=1.4e-08 Score=97.67 Aligned_cols=173 Identities=14% Similarity=0.157 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHhCC---CeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEE-cCCCCcccHHHHHhCCC------
Q psy7357 35 LIGELETDLCEITGY---DKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLI-PVSAHGTNPASAQMAGM------ 104 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~---~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv-~~~~hg~~~~~~~~~g~------ 104 (302)
...++.+++++++.. +. .++.+||++|+++++...+.+ ..+.+|+. ....||.+.......+.
T Consensus 84 ~~~~la~~l~~~~p~~~~~~-~~f~~sGseA~e~AlklAr~~------tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~ 156 (421)
T PRK06777 84 SYVTLAERINALAPIDGPAK-TAFFTTGAEAVENAVKIARAY------TGRPGVIAFGGAFHGRTLLTMALTGKVAPYKV 156 (421)
T ss_pred HHHHHHHHHHHhCCCCCCce-EEEeCCcHHHHHHHHHHHHHh------hCCCeEEEEcCCcCCccHHHHhhcCCCccccc
Confidence 345677788887653 33 455789999988888887765 33445554 44678877654432221
Q ss_pred -------EEEEeecCCC--C---CCCHHHHHHHHhc--cCCCeEEEEEecC-CCceeccc---cHHHHHHHHHHhCCEEE
Q psy7357 105 -------SVEPVSVRKD--G---TIDFSDLETKVKK--NKETLSCLMITYP-STFGVFEE---NITDVCELIHEHGGQVY 166 (302)
Q Consensus 105 -------~v~~i~~~~~--g---~iD~~~l~~~i~~--~~~~t~~V~i~~P-n~~G~~~~---di~~I~~ia~~~g~lli 166 (302)
.+..+|.... + ..|++.+++.+++ +++++++|++..- +..|+..+ .+++|.++|+++|+++|
T Consensus 157 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI 236 (421)
T PRK06777 157 GFGPFPGSIFHALYPNELHGVSVEEALSSVERLFKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLI 236 (421)
T ss_pred CCCCCCCCcEEcCCCccccCcCHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence 1223332211 1 1247778888863 3467888877642 45565322 49999999999999999
Q ss_pred EecCCcccccccC---CCCcc--CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 167 LDGANMNAQVGLC---RPGDY--GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 167 vD~a~~~~~~~~~---~p~~~--gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+|+++. +++-.. ....+ .+|+++. .|.++ ||.++|++++++++++.+.
T Consensus 237 ~DEv~t-g~gr~g~~~~~~~~~~~pDiv~~--sK~l~-----~G~pigav~~~~~i~~~~~ 289 (421)
T PRK06777 237 ADEVQT-GFARTGKLFAMEYYDVKPDLITM--AKSLG-----GGMPISAVVGRAEVMDAPA 289 (421)
T ss_pred Eechhh-CCccCCchhhhhhcCCCCCEEee--ehhhc-----CCCceEEEEEcHHHHhccC
Confidence 999874 222111 11122 3688865 47665 4688999999988777654
No 323
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=99.04 E-value=2e-08 Score=97.30 Aligned_cols=175 Identities=19% Similarity=0.253 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHhCCC--eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEE-cCCCCcccHHHHHhCC-------
Q psy7357 34 QLIGELETDLCEITGYD--KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLI-PVSAHGTNPASAQMAG------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~--~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv-~~~~hg~~~~~~~~~g------- 103 (302)
+...++.++|++++.-. ...++.+||++|+++++...|.+ ..+.+|+. ....||.+.......+
T Consensus 85 ~~~~~lae~L~~~~p~~~~~~v~f~~SGseA~e~AiklAr~~------tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~ 158 (445)
T PRK08593 85 EPLVRLAKKLCELAPGDFEKRVTFGLSGSDANDGIIKFARAY------TGRPYIISFTNAYHGSTYGSLSMSGISLNMRR 158 (445)
T ss_pred HHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHh------hCCCeEEEECCCcCCCcHHHHhhcCCCccccc
Confidence 55677888899987532 23456789999988888887766 23445554 4567887755432222
Q ss_pred ------CEEEEeecCCC-----CCCC-------HHHHHHHHhcc--CCCeEEEEEecC-CCceeccc---cHHHHHHHHH
Q psy7357 104 ------MSVEPVSVRKD-----GTID-------FSDLETKVKKN--KETLSCLMITYP-STFGVFEE---NITDVCELIH 159 (302)
Q Consensus 104 ------~~v~~i~~~~~-----g~iD-------~~~l~~~i~~~--~~~t~~V~i~~P-n~~G~~~~---di~~I~~ia~ 159 (302)
..+..+|.... +..+ ++++++.++++ .+++++|+++.. +..|.+.+ -+++|.++|+
T Consensus 159 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~ 238 (445)
T PRK08593 159 KYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCR 238 (445)
T ss_pred CCCCCCCCcEEeCCCccccccccCCcHHHHHHHHHHHHHHHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHH
Confidence 12344554221 1111 24555555432 367888888764 45576641 2999999999
Q ss_pred HhCCEEEEecCCcccccccCC---CCc--cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 160 EHGGQVYLDGANMNAQVGLCR---PGD--YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 160 ~~g~llivD~a~~~~~~~~~~---p~~--~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
++|+++|+|+++. +++.... ... ..+|+++. .|.++ ||..+|++++++++++.+.
T Consensus 239 ~~g~llI~DEv~t-g~GrtG~~~a~~~~gv~pDi~t~--gK~l~-----~G~p~gav~~~~~i~~~~~ 298 (445)
T PRK08593 239 EHGILFAVDDIQQ-GLGRTGKWSSISHFNITPDLMSF--GKSLA-----GGMPMSAIVGRKEIMESLE 298 (445)
T ss_pred HcCCEEEEechhh-CCCcCchHHHHHhcCCCCCEeee--ccccc-----CCcccEEEEEcHHHHhhhc
Confidence 9999999999873 2211100 011 23688877 48775 3456888999988877664
No 324
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=99.04 E-value=2.4e-09 Score=102.04 Aligned_cols=174 Identities=19% Similarity=0.248 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHhC---CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHHHHHhCC-------
Q psy7357 35 LIGELETDLCEITG---YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPASAQMAG------- 103 (302)
Q Consensus 35 ~~~e~~~~l~~l~g---~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~~~~~~g------- 103 (302)
...++.++|+++.. ++.+ ++..|||.|++.++..++.|+..+|+.++.+++.- +..||.+....+..|
T Consensus 88 Pa~~LA~~L~~~aP~~~l~~v-Ff~~sGSeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~ 166 (449)
T COG0161 88 PAIELAEKLAELAPEGGLDHV-FFTDSGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHA 166 (449)
T ss_pred hHHHHHHHHHHhCCCCCccEE-EEeCCchHHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCchhhhhh
Confidence 37789999999988 5554 56789999988999999999999886555555544 357887655433222
Q ss_pred ------CEEEEeecCC------CCC------CCHHHHHHHHhccC-CCeEEEEEecC---CCceeccc---cHHHHHHHH
Q psy7357 104 ------MSVEPVSVRK------DGT------IDFSDLETKVKKNK-ETLSCLMITYP---STFGVFEE---NITDVCELI 158 (302)
Q Consensus 104 ------~~v~~i~~~~------~g~------iD~~~l~~~i~~~~-~~t~~V~i~~P---n~~G~~~~---di~~I~~ia 158 (302)
.++..+|... ++. -+.++|++.|.++. +++++++++ | ...|++.+ -++++.+||
T Consensus 167 ~~~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a~~le~~i~~~g~~~IAAfI~E-Pv~g~agG~~~pp~~Yl~~vr~iC 245 (449)
T COG0161 167 FYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAADELEALILEHGPETIAAFIVE-PVVGGAGGMLVPPPGYLKRVREIC 245 (449)
T ss_pred hccccccCceecCCCcccccCCCCCChHHHHHHHHHHHHHHHhcCcccEEEEEec-ccccccCCcccCChHHHHHHHHHH
Confidence 1234444321 121 23678999998887 455555554 4 23677643 389999999
Q ss_pred HHhCCEEEEecCCcccccccCCCCcc--------CCcEEEeCCCcccCCCCCCCCC-cceeEEEeCCCCCCC
Q psy7357 159 HEHGGQVYLDGANMNAQVGLCRPGDY--------GSDVSHLNLHKTFCIPHGGGGP-GMGPIGVKSHLAPFL 221 (302)
Q Consensus 159 ~~~g~llivD~a~~~~~~~~~~p~~~--------gaDiv~~~~hK~l~~p~~~gGp-~~G~l~~~~~l~~~l 221 (302)
++||+++|.|++- .+++ +.|.+ -+|++|.+ |.|+. |- .+|.+++++++.+.+
T Consensus 246 ~ky~ILlI~DEV~-tGFG---RTG~~FA~e~~gi~PDi~~~a--KGLT~-----GY~Pl~a~l~~~~I~~~~ 306 (449)
T COG0161 246 DKYGILLIADEVA-TGFG---RTGKMFACEHAGIVPDILCLA--KGLTG-----GYLPLSAVLTSDRIYEAF 306 (449)
T ss_pred HHcCcEEEeecce-eCCC---cCchhhhhhhcCCCCCeeeec--ccccc-----cchhhHhHhhhHHHHHHH
Confidence 9999999999862 2322 23322 36999994 98873 42 466666776655543
No 325
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=99.03 E-value=2.4e-08 Score=96.55 Aligned_cols=171 Identities=19% Similarity=0.220 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHhCCC-eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHHHHHhCCC-------
Q psy7357 34 QLIGELETDLCEITGYD-KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPASAQMAGM------- 104 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~-~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~~~~~~g~------- 104 (302)
+...++.++|++++..+ ...++.+|||+|+++++...|.+... +.+.+|+.. ...||.+.......+-
T Consensus 117 ~~~~~lAe~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~t~~---~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~ 193 (442)
T TIGR03372 117 PLRALLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSP---RGKFTFIAASGAFHGKSLGALSATAKPAFRKPF 193 (442)
T ss_pred HHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHHhh---cCCcEEEEECCCccCCCHHHhhccCCcccCCCC
Confidence 45567888898887543 23456789999988888888876421 123455544 4578877654433221
Q ss_pred -----EEEEeecCCCCCCCHHHHHHHHhc---cCCCeEEEEEecC-CCceecccc----HHHHHHHHHHhCCEEEEecCC
Q psy7357 105 -----SVEPVSVRKDGTIDFSDLETKVKK---NKETLSCLMITYP-STFGVFEEN----ITDVCELIHEHGGQVYLDGAN 171 (302)
Q Consensus 105 -----~v~~i~~~~~g~iD~~~l~~~i~~---~~~~t~~V~i~~P-n~~G~~~~d----i~~I~~ia~~~g~llivD~a~ 171 (302)
.+..+|. -|.+++++.+++ +.+++++|++..- +.-|.+. + ++++.++|+++|+++|+|+++
T Consensus 194 ~p~~~~~~~~p~-----~d~~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~-p~~~yl~~l~~lc~~~g~llI~DEV~ 267 (442)
T TIGR03372 194 MPLLPGFHHVAF-----GDIEAMLKALNECKKTGDDVAAIILEPIQGEGGVIL-PPEGYLPAVRALCDEFGALLILDEVQ 267 (442)
T ss_pred CCCCCCCEEeCC-----CCHHHHHHHHHHHhcCCCcEEEEEEeCccCCCCccc-CCHHHHHHHHHHHHHcCCEEEEeecc
Confidence 1233333 267888877753 3467888888652 4557765 4 899999999999999999998
Q ss_pred cccccccCCC---Ccc--CCcEEEeCCCcccCCCCCCCC-CcceeEEEeCCCCCCC
Q psy7357 172 MNAQVGLCRP---GDY--GSDVSHLNLHKTFCIPHGGGG-PGMGPIGVKSHLAPFL 221 (302)
Q Consensus 172 ~~~~~~~~~p---~~~--gaDiv~~~~hK~l~~p~~~gG-p~~G~l~~~~~l~~~l 221 (302)
. +++..... ..+ .+|+++. .|.++ || -.+|.+++++++++.+
T Consensus 268 t-G~GRtG~~~a~e~~gv~PDivt~--gK~lg-----~G~~Pigavv~~~~i~~~~ 315 (442)
T TIGR03372 268 T-GMGRTGKMFACEHEGVQPDILCL--AKALG-----GGVMPIGATIATEAVFSVL 315 (442)
T ss_pred c-CCCccccchhhhhcCCCCCeeee--hhhhc-----CCcccceEEEecHHHHHhh
Confidence 3 33211110 011 3699886 48775 34 2366677788877766
No 326
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.02 E-value=1.9e-08 Score=97.80 Aligned_cols=180 Identities=13% Similarity=0.121 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHhCCC-eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcC-CCCcccHHHHHhCC--------
Q psy7357 34 QLIGELETDLCEITGYD-KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPV-SAHGTNPASAQMAG-------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~-~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~-~~hg~~~~~~~~~g-------- 103 (302)
+...++.++|++++... ...++.+||++|+++++...|.+...+|.+.+.+|+.-+ ..||.+.......|
T Consensus 99 ~~~~~lae~L~~~~p~~~~~v~f~~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~ 178 (460)
T PRK06916 99 VPSILLAEKLIEVVPEGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVY 178 (460)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCccccccc
Confidence 34467778888887532 235678899999889998888775444433455655544 57786654433222
Q ss_pred ----CEEEEeecCC------CC------CCCHHHHHHHHhccCCCeEEEEEec-C-CCceeccc---cHHHHHHHHHHhC
Q psy7357 104 ----MSVEPVSVRK------DG------TIDFSDLETKVKKNKETLSCLMITY-P-STFGVFEE---NITDVCELIHEHG 162 (302)
Q Consensus 104 ----~~v~~i~~~~------~g------~iD~~~l~~~i~~~~~~t~~V~i~~-P-n~~G~~~~---di~~I~~ia~~~g 162 (302)
..+..+|... .+ .-|++++++.++++.+++++|+++- . ...|++.+ -++++.++|+++|
T Consensus 179 ~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g 258 (460)
T PRK06916 179 SSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYN 258 (460)
T ss_pred CCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcC
Confidence 1233444321 00 1246778888876667899999875 2 34565532 3899999999999
Q ss_pred CEEEEecCCcccccccCCC-----CccCCcEEEeCCCcccCCCCCCCC-CcceeEEEeCCCCCCC
Q psy7357 163 GQVYLDGANMNAQVGLCRP-----GDYGSDVSHLNLHKTFCIPHGGGG-PGMGPIGVKSHLAPFL 221 (302)
Q Consensus 163 ~llivD~a~~~~~~~~~~p-----~~~gaDiv~~~~hK~l~~p~~~gG-p~~G~l~~~~~l~~~l 221 (302)
+++|+|+++. +++-.... ....+|+++. .|.++ || ..+|.+++++++++.+
T Consensus 259 ~llI~DEV~T-G~GRtG~~~a~~~~gv~PDiv~~--gK~l~-----gG~~Pi~av~~~~ei~~~~ 315 (460)
T PRK06916 259 VLFITDEVAT-GFGRTGKMFACEHENVTPDIMTA--GKGLT-----GGYLPIAITVTTDEIYNAF 315 (460)
T ss_pred CEEEeechhh-CCCcCchhhHHHhcCCCCCeeee--ehhhh-----cCccccceeeecHHHHHHh
Confidence 9999999863 33211000 1123799988 58775 35 3578888888776544
No 327
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=99.02 E-value=4.6e-08 Score=94.68 Aligned_cols=175 Identities=18% Similarity=0.168 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHhC---CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHHHHHhCCC-----
Q psy7357 34 QLIGELETDLCEITG---YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPASAQMAGM----- 104 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g---~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~~~~~~g~----- 104 (302)
+...++.++|++++. ++ ..++.+|||+|+++++...+.+ ..+++|+.- ...||.+.......+.
T Consensus 97 ~~~~~lAe~L~~~~p~~~~~-~v~f~~SGsEA~e~AlklAr~~------tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~ 169 (441)
T PRK05769 97 EPAVELAERLVEIAPGGFEK-KVFFTNSGTESNEAAIKIARYH------TGRKYIIAFLGAFHGRTYGSLSLTASKPVQR 169 (441)
T ss_pred HHHHHHHHHHHHhCCCCCCC-EEEECCchHHHHHHHHHHHHHH------hCCCeEEEECCCcCCccHHHHHhcCCCcccc
Confidence 455678888888875 23 3456789999988998888876 234555554 4578877554332211
Q ss_pred --------EEEEeecCCCCC-------------CCHHHHHH-HHhc--cCCCeEEEEEecC-CCceecccc----HHHHH
Q psy7357 105 --------SVEPVSVRKDGT-------------IDFSDLET-KVKK--NKETLSCLMITYP-STFGVFEEN----ITDVC 155 (302)
Q Consensus 105 --------~v~~i~~~~~g~-------------iD~~~l~~-~i~~--~~~~t~~V~i~~P-n~~G~~~~d----i~~I~ 155 (302)
.+..+|.+.... -+++.+++ .+++ +.+++++|++..- +..|.+. + +++|.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~-~~~~~l~~l~ 248 (441)
T PRK05769 170 KGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVV-PPKNFFKELR 248 (441)
T ss_pred cCCCCCCCCeEEeCCCccccccccCCchHHHHHHHHHHHHHHHHhhccCCCceEEEEECcccCCCCCcC-CCHHHHHHHH
Confidence 234444321000 12344666 3332 2367888877642 3557765 5 99999
Q ss_pred HHHHHhCCEEEEecCCcccccccC---CCCcc--CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCC
Q psy7357 156 ELIHEHGGQVYLDGANMNAQVGLC---RPGDY--GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVH 224 (302)
Q Consensus 156 ~ia~~~g~llivD~a~~~~~~~~~---~p~~~--gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~ 224 (302)
++|+++|+++|+|+++. +++... ....+ .+|++++ .|.++ ||..+|.++++++++..+++.
T Consensus 249 ~l~~~~g~lli~DEv~t-G~gr~G~~~a~~~~gv~pDivt~--~K~l~-----~G~p~gav~~~~~i~~~~~~~ 314 (441)
T PRK05769 249 KLADKYGILLIDDEVQT-GMGRTGKMFAIEHFGVEPDIITL--AKAIA-----GGLPLGAVIGRAELMFLPPGS 314 (441)
T ss_pred HHHHHcCCEEEEechhh-CCCcccceehhhccCCCCCEEEE--ccccc-----CCcccEEEEEehhhhhcCCCC
Confidence 99999999999999874 222110 11122 3589876 47765 356688899998887665543
No 328
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=99.02 E-value=6.1e-09 Score=99.07 Aligned_cols=229 Identities=15% Similarity=0.139 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcC-------CCCcc-cHHHHHhCCCE
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPV-------SAHGT-NPASAQMAGMS 105 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~-------~~hg~-~~~~~~~~g~~ 105 (302)
....++++.++++||.+.+ +...+|..+|.....++. ..+++++.+.. ..|-. ....+...|+.
T Consensus 74 pSv~~Lee~vael~G~E~a-lpthqGRgaE~Il~~~~~-------~~~g~e~g~~~~~~~v~hn~~fett~g~a~l~G~~ 145 (467)
T TIGR02617 74 RSYYALAESVKNIFGYQYT-IPTHQGRGAEQIYIPVLI-------KKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCT 145 (467)
T ss_pred chHHHHHHHHHHHhCCceE-EECCCCchHHHHHHHhhc-------ccccccccccccccccceEEEEecchHHHHHcCce
Confidence 4678999999999999985 344567666633333322 02455544322 22222 23466788888
Q ss_pred EEEeecC----------CCCCCCHHHHHHHHhccC-CCeEEEE--EecCCC-ceec---cccHHHHHHHHHHhCCEEEEe
Q psy7357 106 VEPVSVR----------KDGTIDFSDLETKVKKNK-ETLSCLM--ITYPST-FGVF---EENITDVCELIHEHGGQVYLD 168 (302)
Q Consensus 106 v~~i~~~----------~~g~iD~~~l~~~i~~~~-~~t~~V~--i~~Pn~-~G~~---~~di~~I~~ia~~~g~llivD 168 (302)
++.++.+ .+|.+|+++|+++|+++. ++...+. +++ |. -|.. + ++++++++|+++|+.+++|
T Consensus 146 ~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~~i~~v~~tlt~-N~~GGqpvsle-nlr~V~~la~~~GIplhLD 223 (467)
T TIGR02617 146 ARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITC-NSAGGQPVSLA-NLKAVYEIAKKYDIPVVMD 223 (467)
T ss_pred eecccchhhcccccCCCCCCCcCHHHHHHHHhhcCCCCceeeeeeEEE-ecCCCEEeCHH-HHHHHHHHHHHcCCcEEEE
Confidence 8876432 368999999999998542 2332222 233 42 3432 4 7999999999999999999
Q ss_pred cCCcc--cc-------ccc-CCCCc------cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCC----CCCCCCCCccc-
Q psy7357 169 GANMN--AQ-------VGL-CRPGD------YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSH----LAPFLPVHPLS- 227 (302)
Q Consensus 169 ~a~~~--~~-------~~~-~~p~~------~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~----l~~~lpg~~~~- 227 (302)
+|-.+ +. +.. .++.+ ..+|.++.++.|.++.| -+|+++.+++ +.+++..+.+.
T Consensus 224 gARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsKglgAp------vGg~Lag~d~~~~~l~~~~~~~~i~~ 297 (467)
T TIGR02617 224 SARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMSAKKDAMVP------MGGLLCFKDDSFFDVYTECRTLCVVQ 297 (467)
T ss_pred hHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCCCCCc------ccceEEecchhHHHHHHHHHhhcccc
Confidence 97543 22 111 12221 35899999999977754 4578888854 44555554441
Q ss_pred --------CCCCcchhhhHHHHhhHh---hHH--HHHHHHH-HHh-cccccccccCCCcceeEEEEEEeccc
Q psy7357 228 --------SIDSSIGAVSAAHYGSAS---ILP--ISWAYIR-RLE-SHYKTLFRSSRSGLVAHEFVIDVRDF 284 (302)
Q Consensus 228 --------~~~~~l~~~~a~~~~~~~---~~~--~~~~y~~-~l~-~g~~~~~~~~~~~~~~he~~~~~~~~ 284 (302)
.+...+.+++...+-..- +.. ..-.|+. +|. .|+.++. +. -|-+.||...|
T Consensus 298 EGf~tYGGlagrd~ea~a~Gl~e~~~~~yl~~ri~qv~yl~~~L~~~Gvpi~~--~G----ghav~iDa~~~ 363 (467)
T TIGR02617 298 EGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRINQVQYLVNGLEEIGVVCQQ--AG----GHAAFVDAGKL 363 (467)
T ss_pred cCCcCcCchhHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHhCCCcEEe--cC----ccEEEEehhhh
Confidence 122233344422222211 111 1114655 777 6999875 45 68888886644
No 329
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase. Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
Probab=99.01 E-value=4.2e-08 Score=94.22 Aligned_cols=174 Identities=16% Similarity=0.189 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHh--C--CC-eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEE-cCCCCcccHHHHHhCC----
Q psy7357 34 QLIGELETDLCEIT--G--YD-KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLI-PVSAHGTNPASAQMAG---- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~--g--~~-~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv-~~~~hg~~~~~~~~~g---- 103 (302)
+...++.++|++++ + .+ .+.+..+|||+|+++++..+|.+ +.+++|+. ....||.+.......+
T Consensus 78 ~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~------tgr~~ii~~~~~yHG~t~~als~~~~~~~ 151 (412)
T TIGR02407 78 EAKREFLETFNEIILKPRGLDYKVQFPGPTGTNAVESALKLARKV------TGRSNVVSFTNAFHGMTLGSLSVTGNRFK 151 (412)
T ss_pred HHHHHHHHHHHHhccCccCCCceEEEeCCCchHHHHHHHHHHhhh------cCCCeEEEECCCcCCchHHHHHhcCCccc
Confidence 44566777777764 2 32 22333479999988988888766 33455554 4567887755433211
Q ss_pred --------CEEEEeecCCC---CCCCHHHHHHHHhccC---CCeEEEEEecC-CCceecc---ccHHHHHHHHHHhCCEE
Q psy7357 104 --------MSVEPVSVRKD---GTIDFSDLETKVKKNK---ETLSCLMITYP-STFGVFE---ENITDVCELIHEHGGQV 165 (302)
Q Consensus 104 --------~~v~~i~~~~~---g~iD~~~l~~~i~~~~---~~t~~V~i~~P-n~~G~~~---~di~~I~~ia~~~g~ll 165 (302)
..+..+|.+.. ..-|++.+++.++++. +++++|++..- +..|++. .-+++|.++|+++|+++
T Consensus 152 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~ll 231 (412)
T TIGR02407 152 RQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILL 231 (412)
T ss_pred ccCCCCCCCCeEECCCCCccccchhHHHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEE
Confidence 13444554211 1135778899887543 46788876542 4567642 25899999999999999
Q ss_pred EEecCCcccccc---c--CCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 166 YLDGANMNAQVG---L--CRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 166 ivD~a~~~~~~~---~--~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
|+|.++. +++- . .......+|+++. .|+++ .||-++|++++++++ +.+
T Consensus 232 I~DEV~t-G~GRtG~~~a~~~~~v~PDi~~~--~K~lg----~~G~pigav~~~~~~-~~~ 284 (412)
T TIGR02407 232 IVDDIQA-GCGRTGTFFSFEPAGIEPDIVCL--SKSIS----GYGLPLALTLIKPEL-DVW 284 (412)
T ss_pred EEechhh-CCCccchhHHhcccCCCCCEEEe--chhcc----CCccceeEEEEchhh-hcc
Confidence 9999874 2211 0 0111235799887 48775 225679999998776 443
No 330
>KOG0629|consensus
Probab=99.00 E-value=4.1e-09 Score=98.12 Aligned_cols=181 Identities=15% Similarity=0.186 Sum_probs=122.8
Q ss_pred cccccHHHHHHHHHHHHHHHhCCCe--eeEeeCchHHHHHHHHHHHHH--HH--HhhcC--CCCCEEEEcCCCCcccHHH
Q psy7357 27 DQARGYEQLIGELETDLCEITGYDK--ISFQPNSGAQGEYAGLRAIQC--YH--QAQDA--HHRNVCLIPVSAHGTNPAS 98 (302)
Q Consensus 27 e~sqG~l~~~~e~~~~l~~l~g~~~--~~~~~~~Ga~a~~a~l~a~~~--~~--~~~g~--~~~d~Vlv~~~~hg~~~~~ 98 (302)
|+..++--.-+++-.+++++.|-+. +.+..-+|+.+++-++.+.|- +. +..|. -|.-.+..|+-.|-+....
T Consensus 134 EiAPvF~lmE~~vl~km~~ivGw~~~~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYSi~ka 213 (510)
T KOG0629|consen 134 EIAPVFVLMEEEVLAKMREIVGWEEGGDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYSIKKA 213 (510)
T ss_pred EecceEEeehHHHHHHHHHHhCCCCCCCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhhHHHH
Confidence 6666666666777888999999765 455544577665444444331 10 01110 1222344555566555566
Q ss_pred HHhCC---CEEEEeecCCCCCCCHHHHHHHHhccCCC---eEEEEEecCC-CceeccccHHHHHHHHHHhCCEEEEecCC
Q psy7357 99 AQMAG---MSVEPVSVRKDGTIDFSDLETKVKKNKET---LSCLMITYPS-TFGVFEENITDVCELIHEHGGQVYLDGAN 171 (302)
Q Consensus 99 ~~~~g---~~v~~i~~~~~g~iD~~~l~~~i~~~~~~---t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~g~llivD~a~ 171 (302)
+..+| ..++.|+.++.|.+++++||+.|-+.+.+ +..|-.+..+ .+|.++ |+..|+++|++|+.|++||+|
T Consensus 214 Aa~lg~gtd~c~~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFD-dL~~iadiC~k~~lWmHvDAA- 291 (510)
T KOG0629|consen 214 AAFLGLGTDHCIKVKTDERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFD-DLNGIADICEKHKLWMHVDAA- 291 (510)
T ss_pred HHHhccCCceeEEecccccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccC-cHHHHHHHHHhcCEEEEeecc-
Confidence 77777 68999999999999999999999765454 4444444443 689999 899999999999999999987
Q ss_pred cccccccCC-------CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeC
Q psy7357 172 MNAQVGLCR-------PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKS 215 (302)
Q Consensus 172 ~~~~~~~~~-------p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~ 215 (302)
++.+.+-+ .+...+|-|+-+.||.++.|+ ..+.+.++.
T Consensus 292 -wGGglLmS~k~R~kl~Giera~SvtwnpHK~~gapl-----qCsa~l~r~ 336 (510)
T KOG0629|consen 292 -WGGGLLMSRKHRHKLTGIERANSVTWNPHKLMGAPL-----QCSAFLTRE 336 (510)
T ss_pred -cccccccChhhHhhccCccccCceeecHHHhhcCcc-----hhhHHHHHH
Confidence 44433322 234568999999999998765 445566663
No 331
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=99.00 E-value=4.3e-08 Score=94.49 Aligned_cols=172 Identities=17% Similarity=0.202 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHh----CCC-eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEE-cCCCCcccHHHHHhC-----
Q psy7357 34 QLIGELETDLCEIT----GYD-KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLI-PVSAHGTNPASAQMA----- 102 (302)
Q Consensus 34 ~~~~e~~~~l~~l~----g~~-~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv-~~~~hg~~~~~~~~~----- 102 (302)
+...++.+++++++ +++ .+.+..+||++|+++++..+|.| +.+++||. ....||.+.......
T Consensus 82 ~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~------tgr~~ii~~~~~yHG~t~~~ls~~~~~~~ 155 (425)
T PRK09264 82 TAKREFLETFEETILKPRGLDYKVQFTGPTGTNAVEAALKLARKV------TGRTNIVAFTNGFHGMTLGSLAVTGNSHK 155 (425)
T ss_pred HHHHHHHHHHHHhhcCCcCCCceEEEeCCCHHHHHHHHHHHHHHh------cCCCeEEEECCccCCccHHHHHhcCCccc
Confidence 34556777777765 233 22333479999988998888876 34455554 456788765433221
Q ss_pred ----C---CEEEEeecCCC---CCCCHHHHHHHHhccC---CCeEEEEEecC-CCceecc---ccHHHHHHHHHHhCCEE
Q psy7357 103 ----G---MSVEPVSVRKD---GTIDFSDLETKVKKNK---ETLSCLMITYP-STFGVFE---ENITDVCELIHEHGGQV 165 (302)
Q Consensus 103 ----g---~~v~~i~~~~~---g~iD~~~l~~~i~~~~---~~t~~V~i~~P-n~~G~~~---~di~~I~~ia~~~g~ll 165 (302)
+ ..+..+|.... ..-|++++++.+++++ +++++|++..- +..|++. ..+++|+++|++||+++
T Consensus 156 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~ll 235 (425)
T PRK09264 156 RQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILL 235 (425)
T ss_pred ccCCCCCCCCeEEeCCCCccccchhHHHHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEE
Confidence 1 13555665321 1137888999997532 46788877642 3456542 15999999999999999
Q ss_pred EEecCCcccccc---c--CCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCC
Q psy7357 166 YLDGANMNAQVG---L--CRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLA 218 (302)
Q Consensus 166 ivD~a~~~~~~~---~--~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~ 218 (302)
|+|+++. +++. . ..-....+|++++ .|+|+ .+|-.+|++++++++.
T Consensus 236 I~DEV~t-G~GrtG~~~~~~~~~v~PDi~t~--~K~l~----~~G~pigav~~~~~i~ 286 (425)
T PRK09264 236 IVDDIQA-GCGRTGTFFSFERAGITPDIVTL--SKSIS----GYGLPMALVLIKPELD 286 (425)
T ss_pred EEechhh-CCccccHHHHHhhcCCCCCEEEe--ccccC----CCccceEEEEEchhhh
Confidence 9999874 2221 0 0011234688887 48775 2255679999987764
No 332
>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.00 E-value=3.1e-08 Score=96.56 Aligned_cols=180 Identities=17% Similarity=0.199 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHHhC-------CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHHHHHhCCC-
Q psy7357 34 QLIGELETDLCEITG-------YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPASAQMAGM- 104 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g-------~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~~~~~~g~- 104 (302)
+...++.+++++++. ++. .++.+|||+|+++++..+|.|...+|...+.+||.- ...||.+.......+-
T Consensus 107 ~~~~~lae~L~~~~p~~~~~~~~~~-v~f~~sGSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~ 185 (472)
T PRK08742 107 EPAVQLAEQLLAIAPRQDGRAPLSK-VFYADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIP 185 (472)
T ss_pred HHHHHHHHHHHHhCCCcccCCCCCE-EEEeCCchHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCc
Confidence 345677778888764 233 466789999988999988887654443334555554 4578876544332221
Q ss_pred -----------EEEEeecCCC-----C-------CCCHHHHHHHHhccCCCeEEEEEec-C-CCceeccc---cHHHHHH
Q psy7357 105 -----------SVEPVSVRKD-----G-------TIDFSDLETKVKKNKETLSCLMITY-P-STFGVFEE---NITDVCE 156 (302)
Q Consensus 105 -----------~v~~i~~~~~-----g-------~iD~~~l~~~i~~~~~~t~~V~i~~-P-n~~G~~~~---di~~I~~ 156 (302)
.+..+|.... + ..+++.+++.++++.+++++|+++- . +..|++.+ -++++++
T Consensus 186 ~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~ 265 (472)
T PRK08742 186 LYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYALQAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARE 265 (472)
T ss_pred ccccccCCCCCCCEEeCCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHHHHHHH
Confidence 2333443210 1 1146788888875557889988875 1 34566422 4899999
Q ss_pred HHHHhCCEEEEecCCc-ccccc-cCCCC--ccCCcEEEeCCCcccCCCCCCCCC-cceeEEEeCCCCCCC
Q psy7357 157 LIHEHGGQVYLDGANM-NAQVG-LCRPG--DYGSDVSHLNLHKTFCIPHGGGGP-GMGPIGVKSHLAPFL 221 (302)
Q Consensus 157 ia~~~g~llivD~a~~-~~~~~-~~~p~--~~gaDiv~~~~hK~l~~p~~~gGp-~~G~l~~~~~l~~~l 221 (302)
+|+++|+++|+|+++. ++..+ +..-. ...+|+++. .|.++ ||- .+|.+++++++++.+
T Consensus 266 lc~~~gillI~DEV~TGfGRtG~~~a~e~~gv~PDiv~~--gKgl~-----gG~~Plaav~~~~ei~~~~ 328 (472)
T PRK08742 266 LCDAHGAFLIADEIATGFGRTGTLFACEQAGVMPDLLCL--SKGLT-----GGFLPLSAVLATQQLYDAF 328 (472)
T ss_pred HHHHcCCEEEEechhhCCCCCccchHHHhcCCCCCEEEE--ccccc-----CCCCCcceeeccHHHHHHh
Confidence 9999999999999863 22111 10001 123799999 48886 352 477788887776544
No 333
>KOG1383|consensus
Probab=99.00 E-value=5.1e-09 Score=98.52 Aligned_cols=179 Identities=18% Similarity=0.256 Sum_probs=128.9
Q ss_pred CCCCCCCcccccHHHHHHHHHHHHHHHhCCCeeeEe--eCchHHHHHHHHHHHHHHHHhhcC---CCCCEEEEcCCCCcc
Q psy7357 20 MHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQ--PNSGAQGEYAGLRAIQCYHQAQDA---HHRNVCLIPVSAHGT 94 (302)
Q Consensus 20 ~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~~~~~--~~~Ga~a~~a~l~a~~~~~~~~g~---~~~d~Vlv~~~~hg~ 94 (302)
++|-.+ +..++..+.-.|.-.++|.|++.+.+.+- +.+|++ +.+++.+.|...+-. -....|+++...|..
T Consensus 107 ~N~l~~-d~fp~~~~~e~~~Vnm~~~L~~~~~~~~g~~t~G~Se---s~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~~a 182 (491)
T KOG1383|consen 107 FNPLHP-DEFPVVRKLEAECVNMIANLFNAPSDSCGCGTVGGSE---SGLAAKKSYRNRRKAQKGIDKPNIVTPQNVHAA 182 (491)
T ss_pred cCccCc-cccchhHHHHHHHHHHHHHHhcCCccccCccccccch---HHHHHHHHHHHHHHhccCCCCccccchHHHHHH
Confidence 356666 78899999999999999999998754221 122233 556665555332211 123456676666665
Q ss_pred cHHHHHhCCCEEEEeecCC-CCCCCHHHHHHHHhccCCCeEEEEEecCC-CceeccccHHHHHHHHHH-hCCEEEEecCC
Q psy7357 95 NPASAQMAGMSVEPVSVRK-DGTIDFSDLETKVKKNKETLSCLMITYPS-TFGVFEENITDVCELIHE-HGGQVYLDGAN 171 (302)
Q Consensus 95 ~~~~~~~~g~~v~~i~~~~-~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~-~g~llivD~a~ 171 (302)
...+++..++++..+|+++ +..+|+.++.+.++ ++|.+|+..-|| ++|.++ |+++|.++.-+ +++.+++|++-
T Consensus 183 ~eK~a~yf~v~l~~V~~~~~~~~~D~~k~~~~i~---eNti~lv~~~~~~p~G~~e-~ve~l~~l~~e~w~ipiHvDa~~ 258 (491)
T KOG1383|consen 183 FEKAARYFEVELREVPLDEGDYRVDPGKVVRMID---ENTIMLVGSLPNFPTGEIE-DVEKLADLLLEIWDIPIHVDACL 258 (491)
T ss_pred HHHHHhhEEEEEEeeeccccceEecHHHHHHHhc---cceEEEEEEcCCCCccchh-hHHHHHHHHHHHhCCceeecccC
Confidence 6667788899999999985 67899999999999 899999999898 899999 89999999999 99999999763
Q ss_pred cccccccCCC------CccC-----CcEEEeCCCcccCCCCCCCCCcceeEEEeC
Q psy7357 172 MNAQVGLCRP------GDYG-----SDVSHLNLHKTFCIPHGGGGPGMGPIGVKS 215 (302)
Q Consensus 172 ~~~~~~~~~p------~~~g-----aDiv~~~~hK~l~~p~~~gGp~~G~l~~~~ 215 (302)
+++..| ..|+ .--+..++||.=..| +|+|++..+.
T Consensus 259 ----GgFi~p~~~~~~~~fdFr~p~V~Sisa~~HKYGl~~-----~G~~~vl~r~ 304 (491)
T KOG1383|consen 259 ----GGFINPAGYLNEEEFDFRVPGVTSISADGHKYGLAP-----AGSSWVLYRN 304 (491)
T ss_pred ----ccccccccccCccccccCCCCceeEeeccceeeeee-----cCcEEEEEcc
Confidence 222222 2232 334666779954433 5888888873
No 334
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.00 E-value=1.4e-08 Score=98.84 Aligned_cols=179 Identities=15% Similarity=0.178 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHhC--CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHHHHHhCCC------
Q psy7357 34 QLIGELETDLCEITG--YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPASAQMAGM------ 104 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g--~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~~~~~~g~------ 104 (302)
+...++.++|++++. .+. .++.++||+|+++++...+.|+..++...+.+|+.- ...||.+.......+-
T Consensus 90 ~~~~~lae~L~~~~p~~~~~-v~f~~sGsEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~ 168 (466)
T PRK07030 90 EPVIELSERLVKITPPGLSR-CFYADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFTET 168 (466)
T ss_pred HHHHHHHHHHHHhCCCCcCE-EEEeCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCcccccc
Confidence 455677788888774 333 456789999988998888877554553344555544 4578876554332221
Q ss_pred ------EEEEeecCCC-----C-------CCCHHHHHHHHhccCCCeEEEEEec--CCCceeccc---cHHHHHHHHHHh
Q psy7357 105 ------SVEPVSVRKD-----G-------TIDFSDLETKVKKNKETLSCLMITY--PSTFGVFEE---NITDVCELIHEH 161 (302)
Q Consensus 105 ------~v~~i~~~~~-----g-------~iD~~~l~~~i~~~~~~t~~V~i~~--Pn~~G~~~~---di~~I~~ia~~~ 161 (302)
.+..+|.... + .-|++++++.++++.+++++|+++- ....|++.+ -+++++++|+++
T Consensus 169 ~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~ 248 (466)
T PRK07030 169 YKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRY 248 (466)
T ss_pred CCccCCCCEEcCCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHc
Confidence 2333443211 1 1136778888876667899998875 234466532 389999999999
Q ss_pred CCEEEEecCCcccccccC-----CCCccCCcEEEeCCCcccCCCCCCCCC-cceeEEEeCCCCCCC
Q psy7357 162 GGQVYLDGANMNAQVGLC-----RPGDYGSDVSHLNLHKTFCIPHGGGGP-GMGPIGVKSHLAPFL 221 (302)
Q Consensus 162 g~llivD~a~~~~~~~~~-----~p~~~gaDiv~~~~hK~l~~p~~~gGp-~~G~l~~~~~l~~~l 221 (302)
|+++|+|+++. +++-.. .--...+|+++. .|.++ ||- .+|.+++++++++.+
T Consensus 249 g~llI~DEV~T-GfGRtG~~~a~~~~gv~PDiv~~--gKgl~-----gG~~Pi~av~~~~ei~~~~ 306 (466)
T PRK07030 249 GVHLIHDEIAV-GFGRTGTMFACEQAGIRPDFLCL--SKALT-----GGYLPLAAVLTTDTVYQAF 306 (466)
T ss_pred CCEEEEeehhh-CcCccccchHHHhcCCCCCEEee--ehhcc-----CCcccceEEEecHHHHHHH
Confidence 99999999863 222110 001123799999 58876 452 578888888876654
No 335
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=99.00 E-value=4.5e-08 Score=94.34 Aligned_cols=175 Identities=15% Similarity=0.207 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHhCCC--eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEE-EcCCCCcccHHHHHhCC-------
Q psy7357 34 QLIGELETDLCEITGYD--KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCL-IPVSAHGTNPASAQMAG------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~--~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vl-v~~~~hg~~~~~~~~~g------- 103 (302)
+...++.+++++++.-+ ...++.+|||+|+++++...+.+ +.+.+|+ .....||.+.......+
T Consensus 83 ~~~~~la~~l~~~~p~~~~~~v~f~~SGseA~e~AlklAr~~------tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~ 156 (425)
T PRK07495 83 ENYVRLAERLNALVPGDFAKKTIFVTTGAEAVENAVKIARAA------TGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKV 156 (425)
T ss_pred HHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHh------hCCCeEEEECCCcCCccHHHhhhcCCCccccc
Confidence 45667888888887532 23567889999988988887766 2344555 45567887654332111
Q ss_pred -C-----EEEEeecCC--CCC---CCHHHHHHHHhc--cCCCeEEEEEecC-CCceecc---ccHHHHHHHHHHhCCEEE
Q psy7357 104 -M-----SVEPVSVRK--DGT---IDFSDLETKVKK--NKETLSCLMITYP-STFGVFE---ENITDVCELIHEHGGQVY 166 (302)
Q Consensus 104 -~-----~v~~i~~~~--~g~---iD~~~l~~~i~~--~~~~t~~V~i~~P-n~~G~~~---~di~~I~~ia~~~g~lli 166 (302)
+ .+..+|++. ++. -+++++++.+++ .++++++|+++.- ...|.+. .-+++|.++|+++|+++|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI 236 (425)
T PRK07495 157 GFGAMMPDVYHVPFPVELHGVSVEQSLAALDKLFKADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLI 236 (425)
T ss_pred CCCCCCCCeEEecCCcccccccHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence 1 344555532 221 125566777753 2356888877642 2456542 148999999999999999
Q ss_pred EecCCcccccccCC-----CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 167 LDGANMNAQVGLCR-----PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 167 vD~a~~~~~~~~~~-----p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+|.++. +++.... .....+|++++ .|.++ ||-.+|++++++++++.+.
T Consensus 237 ~DEv~t-G~gr~G~~~a~~~~gv~pDi~tl--sK~l~-----~G~pigav~~~~~i~~~~~ 289 (425)
T PRK07495 237 ADEVQT-GFARTGKLFAMEHHEVAADLTTM--AKGLA-----GGFPLAAVTGRAEIMDAPG 289 (425)
T ss_pred Eechhh-cCCcCCCceeecccCCCCCEEee--hhhhc-----CCccceEEEEcHHHHhccC
Confidence 999874 2221111 11124688887 48776 3567899999988877654
No 336
>PRK05965 hypothetical protein; Provisional
Probab=98.99 E-value=1.9e-08 Score=97.77 Aligned_cols=179 Identities=15% Similarity=0.134 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHhC--CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHHHHHhCC-------
Q psy7357 34 QLIGELETDLCEITG--YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPASAQMAG------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g--~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~~~~~~g------- 103 (302)
+...++.++|++++. ++. .++.++||+|+++++..+|.|...+|...+++||.- ...||.+.......+
T Consensus 90 ~~~~~lae~L~~~~p~~~~~-v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~ 168 (459)
T PRK05965 90 EPAIRLAAKLAERAPGSLNH-VYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRG 168 (459)
T ss_pred HHHHHHHHHHHhhCCCCcCE-EEEeCChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcc
Confidence 445678888888874 333 455788999988999988887654443335555544 457887643222111
Q ss_pred C-----EEEEeecCC--CC--CCC--------HHHHHHHHhccC-CCeEEEEEecC-CCceeccc---cHHHHHHHHHHh
Q psy7357 104 M-----SVEPVSVRK--DG--TID--------FSDLETKVKKNK-ETLSCLMITYP-STFGVFEE---NITDVCELIHEH 161 (302)
Q Consensus 104 ~-----~v~~i~~~~--~g--~iD--------~~~l~~~i~~~~-~~t~~V~i~~P-n~~G~~~~---di~~I~~ia~~~ 161 (302)
+ .+..+|... .. .-| ++++++.++++. +++++|+++-- ...|++.+ -+++++++|+++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~ 248 (459)
T PRK05965 169 FDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASVAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACREL 248 (459)
T ss_pred cCCCCCCCEEcCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHc
Confidence 1 123343321 00 123 367888887543 67888888752 34465532 379999999999
Q ss_pred CCEEEEecCCcccccccC---CCC--ccCCcEEEeCCCcccCCCCCCCC-CcceeEEEeCCCCCCC
Q psy7357 162 GGQVYLDGANMNAQVGLC---RPG--DYGSDVSHLNLHKTFCIPHGGGG-PGMGPIGVKSHLAPFL 221 (302)
Q Consensus 162 g~llivD~a~~~~~~~~~---~p~--~~gaDiv~~~~hK~l~~p~~~gG-p~~G~l~~~~~l~~~l 221 (302)
|+++|+|+++. +++-.. ... ...+|+++. .|.++ || -.+|.+++++++++.+
T Consensus 249 gillI~DEV~t-GfGRtG~~~a~~~~gv~PDiv~~--gKgl~-----gG~~Pi~av~~~~~i~~~~ 306 (459)
T PRK05965 249 GILFVADEVIT-GFGRTGPLFACEAEGVVPDLMTV--AKGLT-----SGYVPMGAVLMSDHVYQGI 306 (459)
T ss_pred CCEEEEechhc-cCccCchhhhHhhcCCCCCeEEe--chhhc-----cCCcceeEEEEcHHHHHHH
Confidence 99999999863 221110 001 124799999 48886 35 2578888888877655
No 337
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=98.99 E-value=9.7e-09 Score=98.99 Aligned_cols=180 Identities=14% Similarity=0.113 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHhCCCe-eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHHHHHhCC--------
Q psy7357 34 QLIGELETDLCEITGYDK-ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPASAQMAG-------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~-~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~~~~~~g-------- 103 (302)
+...++.++|++++.-+. ..+..+|||+|+++++...+.|...+| +++.+|+.. ...||.+.......+
T Consensus 86 ~~~~~la~~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~~~~~g-~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~ 164 (428)
T PRK07986 86 PPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKG-EPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSL 164 (428)
T ss_pred HHHHHHHHHHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcC-CCCcEEEEECCCcCCCcHhhhcccCCchhhhhc
Confidence 445677788888875321 345678999998899988887754443 234555544 457776644332211
Q ss_pred -----CEEEEeecCCC------CCCCHHHHHHHHhccCCCeEEEEEecC-C-Cceeccc---cHHHHHHHHHHhCCEEEE
Q psy7357 104 -----MSVEPVSVRKD------GTIDFSDLETKVKKNKETLSCLMITYP-S-TFGVFEE---NITDVCELIHEHGGQVYL 167 (302)
Q Consensus 104 -----~~v~~i~~~~~------g~iD~~~l~~~i~~~~~~t~~V~i~~P-n-~~G~~~~---di~~I~~ia~~~g~lliv 167 (302)
-.+..+|.... ..-|++++++.++++.+++++|++..- . ..|++.+ .+++|+++|+++|+++|+
T Consensus 165 ~~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~ 244 (428)
T PRK07986 165 YKGYLPENLFAPAPQSRFDGEWDERDIAPFARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIA 244 (428)
T ss_pred cCCCCCCCEEECCCCcccchhhHHHHHHHHHHHHHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEE
Confidence 01233332111 123678889988765567888888752 3 4455421 389999999999999999
Q ss_pred ecCCcccccccCCC---Ccc--CCcEEEeCCCcccCCCCCCCC-CcceeEEEeCCCCCCCC
Q psy7357 168 DGANMNAQVGLCRP---GDY--GSDVSHLNLHKTFCIPHGGGG-PGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 168 D~a~~~~~~~~~~p---~~~--gaDiv~~~~hK~l~~p~~~gG-p~~G~l~~~~~l~~~lp 222 (302)
|+++ .+++..... ..+ .+|+++. .|.++ || -.+|.+++++++++.+.
T Consensus 245 DEv~-tG~GrtG~~fa~~~~gv~PDi~t~--gK~l~-----gG~~p~~av~~~~~i~~~~~ 297 (428)
T PRK07986 245 DEIA-TGFGRTGKLFACEHAGIAPDILCL--GKALT-----GGTMTLSATLTTREVAETIS 297 (428)
T ss_pred eccc-cCCccCCCeeeecccCCCCCEEEe--chhhh-----CCcccCcchhchHHHHHHhh
Confidence 9997 444211111 112 3688886 58774 45 35677777877766553
No 338
>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=98.98 E-value=1.3e-08 Score=97.91 Aligned_cols=176 Identities=17% Similarity=0.141 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHhC--CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHHHHHhCC-------
Q psy7357 34 QLIGELETDLCEITG--YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPASAQMAG------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g--~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~~~~~~g------- 103 (302)
+...++.++++++++ ++. .++.+|||+|+++++...+.|...+|...+.+|+.. ...||.+.......+
T Consensus 83 ~~~~~lae~L~~~~p~~~~~-v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~ 161 (422)
T PRK05630 83 EPAIKLTRKLLNLTDNGLDH-VFYSDSGSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHS 161 (422)
T ss_pred HHHHHHHHHHHhhCCCCcCE-EEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccccc
Confidence 345678888888874 343 456789999988999988887544443334555544 457886654433222
Q ss_pred ------CEEEEeecCCCCCCC-------HHHHHHHHhccCCCeEEEEEec-C-CCceeccc---cHHHHHHHHHHhCCEE
Q psy7357 104 ------MSVEPVSVRKDGTID-------FSDLETKVKKNKETLSCLMITY-P-STFGVFEE---NITDVCELIHEHGGQV 165 (302)
Q Consensus 104 ------~~v~~i~~~~~g~iD-------~~~l~~~i~~~~~~t~~V~i~~-P-n~~G~~~~---di~~I~~ia~~~g~ll 165 (302)
..+..+|.......+ .+.+++.+. +++++|+++- . ...|++.+ .++++.++|+++|+++
T Consensus 162 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~ll 238 (422)
T PRK05630 162 LWKGTLPEQIFAPAPPVRGSSPQEISEYLRSLELLID---ETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILL 238 (422)
T ss_pred cccccCCCCeEcCCCcccCCChHHHHHHHHHHHHHHh---hceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEE
Confidence 122334432111112 245555565 6889998875 1 34465422 5899999999999999
Q ss_pred EEecCCcccccccCCC---C--ccCCcEEEeCCCcccCCCCCCCC-CcceeEEEeCCCCCCC
Q psy7357 166 YLDGANMNAQVGLCRP---G--DYGSDVSHLNLHKTFCIPHGGGG-PGMGPIGVKSHLAPFL 221 (302)
Q Consensus 166 ivD~a~~~~~~~~~~p---~--~~gaDiv~~~~hK~l~~p~~~gG-p~~G~l~~~~~l~~~l 221 (302)
|+|+++ .+++..... . ...+|+++. .|.++ || +.+|.+++++++.+.+
T Consensus 239 I~DEv~-tG~GrtG~~~a~~~~gv~PDi~t~--gK~l~-----gG~~p~~av~~~~~i~~~~ 292 (422)
T PRK05630 239 IADEIA-TGFGRTGELFATLAAGVTPDIMCV--GKALT-----GGFMSFAATLCTDKVAQLI 292 (422)
T ss_pred EEecce-eCCCcCchhhHHHhcCCCCCeeee--echhh-----cCccccceeeccHHHHHHH
Confidence 999987 333211000 0 123689987 58775 35 5678888888877655
No 339
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=98.98 E-value=1.8e-08 Score=97.24 Aligned_cols=173 Identities=13% Similarity=0.120 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHhCCC-eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEE-cCCCCccc---HHHHHhCCC---EE
Q psy7357 35 LIGELETDLCEITGYD-KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLI-PVSAHGTN---PASAQMAGM---SV 106 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~-~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv-~~~~hg~~---~~~~~~~g~---~v 106 (302)
...++.++|+++++.. ....+.+||++|+++++...|.+ +.+.+|+. ....||.+ .......+- ..
T Consensus 94 ~~~~la~~L~~~~~~~~~~v~f~~SGsEA~e~AiklAr~~------tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~ 167 (433)
T PRK00615 94 QEILFAEELFSYLGLEDHKIRFVSSGTEATMTAVRLARGI------TGRSIIIKFLGCYHGHADTLLQGISFSETSLDTL 167 (433)
T ss_pred HHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHh------hCCCEEEEEcCccCCCCcccCcccccCCCCcCcC
Confidence 4567778888887653 23456789999988888888876 34455554 45578854 211111110 00
Q ss_pred EE-e---ecCCC----CCCCHHHHHHHHhccCCCeEEEEEecC-CCceecccc---HHHHHHHHHHhCCEEEEecCCccc
Q psy7357 107 EP-V---SVRKD----GTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEEN---ITDVCELIHEHGGQVYLDGANMNA 174 (302)
Q Consensus 107 ~~-i---~~~~~----g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~d---i~~I~~ia~~~g~llivD~a~~~~ 174 (302)
.. . +...+ ..-|++++++.+.++.+++++|++..- +..|.+.++ +++|.++|+++|+++|+|+++. +
T Consensus 168 ~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~t-G 246 (433)
T PRK00615 168 THLVDTDLAHPLTLSLPYNDFQIFQTVMNSLGHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVT-G 246 (433)
T ss_pred CCCCCCCCCCCCeEeCCCCCHHHHHHHHHhcCCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccc-c
Confidence 00 0 00000 113789999999766567787777653 345766421 5799999999999999999973 3
Q ss_pred c--cccCCCC--ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 175 Q--VGLCRPG--DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 175 ~--~~~~~p~--~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
+ +...... ...+|++++ .|.++ ||-.+|++++++++++.+
T Consensus 247 ~R~G~~ga~~~~gv~PDi~~~--gK~lg-----gG~p~~av~~~~~i~~~~ 290 (433)
T PRK00615 247 FRVAQGGAAAIYHVKPDITVY--GKILG-----GGLPAAAVVAHKSIMDHL 290 (433)
T ss_pred ccccHhHHHHhcCCCCCeEEE--ccccc-----CCcceeeeeecHHHHhhh
Confidence 2 1110011 124689886 58775 243478888898887766
No 340
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=98.97 E-value=4.4e-08 Score=94.89 Aligned_cols=173 Identities=16% Similarity=0.166 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHhCCC--eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcC-CCCcccHHHHHhCC-------
Q psy7357 34 QLIGELETDLCEITGYD--KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPV-SAHGTNPASAQMAG------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~--~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~-~~hg~~~~~~~~~g------- 103 (302)
+...++.+++++++... ...++.++|++|+++++...|.+ .++++|+..+ ..||.+.......+
T Consensus 99 ~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~------tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~ 172 (443)
T PRK06058 99 EGYVAVAEQLNRLTPGDHEKRSALFNSGAEAVENAVKIARSY------TGRQAVVVFDHAYHGRTNLTMALTAKSMPYKS 172 (443)
T ss_pred HHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHh------hCCCeEEEECCCcCcChHHHHhhcCCCccccc
Confidence 56668888898887532 23566889999988888877766 3345666555 46776655433211
Q ss_pred -C-----EEEEeecCC--CC----CC--------CHHHHHHHHhccCCCeEEEEEecCC-Cceeccc---cHHHHHHHHH
Q psy7357 104 -M-----SVEPVSVRK--DG----TI--------DFSDLETKVKKNKETLSCLMITYPS-TFGVFEE---NITDVCELIH 159 (302)
Q Consensus 104 -~-----~v~~i~~~~--~g----~i--------D~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~~---di~~I~~ia~ 159 (302)
+ .+..+|... +. .. .++.+++.+. .+++++|++.--. ..|++.+ -+++|.++|+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~ 250 (443)
T PRK06058 173 GFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARAITVIEKQVG--ADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCR 250 (443)
T ss_pred ccCCCCCCceEcCCCcccccccccccchHHHHHHHHHHHHHhhC--CCceEEEEECCccCCCCCcCCCHHHHHHHHHHHH
Confidence 1 123333211 00 01 1222333332 3678888765322 4466531 3899999999
Q ss_pred HhCCEEEEecCCccccc--c-cCCCC--ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 160 EHGGQVYLDGANMNAQV--G-LCRPG--DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 160 ~~g~llivD~a~~~~~~--~-~~~p~--~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
++|+++|+|+++. +++ + ..... ...+|+++. .|.++ ||..+|.+++++++++.+.
T Consensus 251 ~~gillI~DEV~t-GfgRtG~~fa~~~~gv~PDiv~~--gK~l~-----~G~Pi~av~~~~~i~~~~~ 310 (443)
T PRK06058 251 ENGVVFIADEVQT-GFARTGAWFACEHEGIVPDLITT--AKGIA-----GGLPLSAVTGRAEIMDAPH 310 (443)
T ss_pred HcCCEEEEecccc-CCCcChhhhHHHhcCCCCCEEEE--ccccc-----CCCccEEEEEcHHHHhhcc
Confidence 9999999999874 222 1 00001 123699988 48776 3567899999988877654
No 341
>PRK12462 phosphoserine aminotransferase; Provisional
Probab=98.97 E-value=3.8e-09 Score=99.18 Aligned_cols=166 Identities=10% Similarity=0.056 Sum_probs=106.2
Q ss_pred cccHHHHHHHHHHHHHHHhCCCe---eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEE--EcCCCCcccHH-HHHhC
Q psy7357 29 ARGYEQLIGELETDLCEITGYDK---ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCL--IPVSAHGTNPA-SAQMA 102 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~---~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vl--v~~~~hg~~~~-~~~~~ 102 (302)
+.-+.+++.++++.++++++.+. +-+..++|+.+.+++.+.+. .++++++ +....++.... .++..
T Consensus 44 s~~F~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~ea~~~Nll--------~~g~~~~~~~~tG~fg~r~~~ea~~~ 115 (364)
T PRK12462 44 SSWFSSLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQFSMIPMNFS--------RPGAAAPEYVTTGYWSRKAIGEASRV 115 (364)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeccHHHHHHHHHHHcC--------CCCCcEEEEEeCCHHHHHHHHHHHhc
Confidence 45678899999999999999843 34445556666656666654 4667543 44444544332 45566
Q ss_pred CCEEEEeecCC----CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccc
Q psy7357 103 GMSVEPVSVRK----DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVG 177 (302)
Q Consensus 103 g~~v~~i~~~~----~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~ 177 (302)
| ++..+...+ ...+|++++ .++ ++.+.|.+++- +.+|+..+++ .+.+++++++|++..+..-.
T Consensus 116 g-~v~~~~~~~~~~~~~~p~~~~~--~~~---~d~~~v~~t~NETstGv~~~~~------~~~~~~llvvD~sS~~~s~p 183 (364)
T PRK12462 116 A-AMRVVWDGAASGYRTLPSLAEL--DWD---ARAPFRHYVSNETVEGLQFPDA------AGLPDSPLIADMSSDFMSRP 183 (364)
T ss_pred C-CceEecCcCCCCCCcCCCHHHh--ccC---CCCcEEEEccCCCCceEecCcc------cccCCCeEEEEcCchhhCCC
Confidence 6 555443211 234566665 222 45666777763 4689887433 23368999999875332222
Q ss_pred cCCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 178 LCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 178 ~~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
.+..+| |++..+++|.|+ | ||+++++++++++++.+.
T Consensus 184 -id~~~~--dvi~agsQKnlg-P-----~Gltvvivs~~al~~~~~ 220 (364)
T PRK12462 184 -FDVEAY--GMVYAHAQKNLG-P-----AGVTVAIIRRALLERVPD 220 (364)
T ss_pred -CChHHc--cEEEeeccccCC-C-----CceEEEEECHHHHhhccc
Confidence 233444 999999999997 5 799999999988776543
No 342
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=98.96 E-value=2.5e-08 Score=96.23 Aligned_cols=179 Identities=15% Similarity=0.153 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHhC--CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcC-CCCcccHHHHHhCC-------
Q psy7357 34 QLIGELETDLCEITG--YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPV-SAHGTNPASAQMAG------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g--~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~-~~hg~~~~~~~~~g------- 103 (302)
+...++.+++++++. ++. .++.++||+|+++++...|.|...++...+.+|+.-. ..||.........+
T Consensus 87 ~~~~~lae~L~~~~p~~~~~-v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~ 165 (429)
T PRK06173 87 EPAVELAQKLLEILPPSLNK-IFFADSGSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHG 165 (429)
T ss_pred HHHHHHHHHHHhhCCCCcCE-EEEeCCchHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhhh
Confidence 345677778888764 343 4567899999889999888876544433345555544 57775443222111
Q ss_pred -C-----EEEEeecCCC------CCCCHHHHHHHHhccCCCeEEEEEec--CCCceeccc---cHHHHHHHHHHhCCEEE
Q psy7357 104 -M-----SVEPVSVRKD------GTIDFSDLETKVKKNKETLSCLMITY--PSTFGVFEE---NITDVCELIHEHGGQVY 166 (302)
Q Consensus 104 -~-----~v~~i~~~~~------g~iD~~~l~~~i~~~~~~t~~V~i~~--Pn~~G~~~~---di~~I~~ia~~~g~lli 166 (302)
+ .+..+|.... ..-+++.+++.++++.+++++|+++- ....|++.+ -+++++++|+++|+++|
T Consensus 166 ~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~l~~~i~~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI 245 (429)
T PRK06173 166 LFNHSLPVQYFLPQPSIKFGEEWNDEAIEPLQDLLEQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLI 245 (429)
T ss_pred cccccCCCCeEeCCCCcccchhHHHHHHHHHHHHHHhCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEE
Confidence 1 1233443210 01257778888876667899998875 134465521 48999999999999999
Q ss_pred EecCCcccccccCCC---Cc--cCCcEEEeCCCcccCCCCCCCC-CcceeEEEeCCCCCCC
Q psy7357 167 LDGANMNAQVGLCRP---GD--YGSDVSHLNLHKTFCIPHGGGG-PGMGPIGVKSHLAPFL 221 (302)
Q Consensus 167 vD~a~~~~~~~~~~p---~~--~gaDiv~~~~hK~l~~p~~~gG-p~~G~l~~~~~l~~~l 221 (302)
+|+++ .+++..... .. ..+||+++ .|.|+ || ..++.+++++++++.+
T Consensus 246 ~DEv~-tG~GrtG~~~a~~~~gv~PDiv~~--gK~l~-----gG~~p~~a~~~~~~i~~~~ 298 (429)
T PRK06173 246 FDEIA-TGFGRTGKLFALEHAGVVPDIMCI--GKALT-----GGYLTLSATITTEAIAQTI 298 (429)
T ss_pred ecchh-cCCCcCCcchHHHhcCCCCCEEEe--ehhhh-----CCccccceEEecHHHHHHH
Confidence 99998 444321111 11 23689986 58774 45 4567777787766654
No 343
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=98.96 E-value=5.7e-08 Score=94.46 Aligned_cols=177 Identities=15% Similarity=0.124 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHhCCC-eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHHHHHhCC--------
Q psy7357 34 QLIGELETDLCEITGYD-KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPASAQMAG-------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~-~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~~~~~~g-------- 103 (302)
+...++.++|+++++.+ .-.++.+|||+|+++++...|.+ ..+.+|+.. ...||.+.......+
T Consensus 96 ~~~~~lae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~------tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~ 169 (457)
T PRK05639 96 ERAIRVAEKLAEISPIENPKVLFGLSGSDAVDMAIKVSKFS------TRRPWILAFIGAYHGQTLGATSVAAFQSSQKRG 169 (457)
T ss_pred HHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHh------cCCCeEEEECCCcCCccHHHHHHcCCCcccccC
Confidence 45567888888887643 23456789999988888887765 345555554 467887754333211
Q ss_pred C-----EEEEeecCCCCC--------CCH--------HHHHHHHhc---cCCCeEEEEEecC-CCceeccc---cHHHHH
Q psy7357 104 M-----SVEPVSVRKDGT--------IDF--------SDLETKVKK---NKETLSCLMITYP-STFGVFEE---NITDVC 155 (302)
Q Consensus 104 ~-----~v~~i~~~~~g~--------iD~--------~~l~~~i~~---~~~~t~~V~i~~P-n~~G~~~~---di~~I~ 155 (302)
+ .++.+|...... -|. +.+++.+.+ .++++++|+++-- ...|++.+ -++++.
T Consensus 170 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~ 249 (457)
T PRK05639 170 FSPLMPNVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELK 249 (457)
T ss_pred CCCCCCCceEeCCCccccccccccccCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHH
Confidence 1 245555532110 122 235554421 2467888888642 34466532 389999
Q ss_pred HHHHHhCCEEEEecCCcccccccCC---CC--ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCC
Q psy7357 156 ELIHEHGGQVYLDGANMNAQVGLCR---PG--DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVH 224 (302)
Q Consensus 156 ~ia~~~g~llivD~a~~~~~~~~~~---p~--~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~ 224 (302)
++|+++|+++|+|+++. +++-... .. ...+|++++ .|.++. |-.+|.+++++++++...+.
T Consensus 250 ~lc~~~g~llI~DEv~t-G~GrtG~~~a~~~~gv~PDiv~~--gK~l~g-----G~pi~av~~~~~i~~~~~~~ 315 (457)
T PRK05639 250 KLLDEHGILLVMDEVQT-GIGRTGKWFASEWFEVKPDLIIF--GKGVAS-----GMGLSGVIGRKELMDLTSGS 315 (457)
T ss_pred HHHHHcCCEEEEechhh-ccCcCchHHHHHhcCCCCCEEEe--chhhcC-----CCcceeEEehHHHHhhcCCC
Confidence 99999999999999874 3321100 00 124799997 588762 44588899998887744443
No 344
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=98.95 E-value=7e-08 Score=93.50 Aligned_cols=171 Identities=16% Similarity=0.208 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHhCCC----eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEE-cCCCCcccHHHHHhCC-----
Q psy7357 34 QLIGELETDLCEITGYD----KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLI-PVSAHGTNPASAQMAG----- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~----~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv-~~~~hg~~~~~~~~~g----- 103 (302)
+...++.++|++++.-. ...+..+|||+|+++++...+.| +.+.+|+. ....||.+.......+
T Consensus 82 ~~~~~lae~L~~~~p~~~~~~~~~f~~~sGsEA~e~AlklAr~~------tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~ 155 (442)
T TIGR00709 82 PLKDAFIEALLNIIPKRKMDYKLQFPGPSGADAVEAAIKLAKTY------TGRTNVISFSGGFHGMTIGALAVTGNLFAK 155 (442)
T ss_pred HHHHHHHHHHHHhCCCcCCCccEEEeCCCHHHHHHHHHHHHHHh------cCCCeEEEEcCCcCCchHHHHhhcCChhhh
Confidence 45667888898887532 22344579999988888888876 33445554 4567887655443222
Q ss_pred --C-----EEEEeecCCCCCC--------CH----HHHHHHHh---ccCCCeEEEEEecC-CCceeccc---cHHHHHHH
Q psy7357 104 --M-----SVEPVSVRKDGTI--------DF----SDLETKVK---KNKETLSCLMITYP-STFGVFEE---NITDVCEL 157 (302)
Q Consensus 104 --~-----~v~~i~~~~~g~i--------D~----~~l~~~i~---~~~~~t~~V~i~~P-n~~G~~~~---di~~I~~i 157 (302)
. .+..+|....... +. +.+++.++ +..+++++|+++.. +..|.+.+ -+++|+++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~l 235 (442)
T TIGR00709 156 NAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSNASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREV 235 (442)
T ss_pred ccCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHH
Confidence 1 2334443211111 11 22344443 12256888888763 45565421 48999999
Q ss_pred HHHhCCEEEEecCCc-ccccc-cCCCC--ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCC
Q psy7357 158 IHEHGGQVYLDGANM-NAQVG-LCRPG--DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHL 217 (302)
Q Consensus 158 a~~~g~llivD~a~~-~~~~~-~~~p~--~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l 217 (302)
|+++|+++|+|+++. ++..+ +.... ...+|+++. .|.++ ||..+|.+++++++
T Consensus 236 c~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~--gK~l~-----~G~Pigav~~~~~~ 292 (442)
T TIGR00709 236 TRKHDIKLILDEVQAGFGRSGTMFAFEHAGIEPDFVVM--SKAVG-----GGLPLAVLLIAPEF 292 (442)
T ss_pred HHHcCCEEEEeccccCCCCCCchhHHHHcCCCCcEEEE--ccccc-----CCcccEEEEEchHH
Confidence 999999999999873 22111 10101 123699997 58776 25779999998774
No 345
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=98.94 E-value=2.8e-08 Score=96.35 Aligned_cols=179 Identities=20% Similarity=0.261 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHhC--CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEE-cCCCCcccHHHHHhCC-------
Q psy7357 34 QLIGELETDLCEITG--YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLI-PVSAHGTNPASAQMAG------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g--~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv-~~~~hg~~~~~~~~~g------- 103 (302)
+...++.++|++++. .+. .++.+||++|+++++...+.|...++...+.+||. ....||.........|
T Consensus 92 ~~~~~la~~L~~~~p~~~~~-v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~ 170 (445)
T PRK09221 92 PLAFELAERLAELAPGGLDH-VFFTNSGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKM 170 (445)
T ss_pred HHHHHHHHHHHHhCCCCCCE-EEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhc
Confidence 445678888888874 344 45678999998899988887754333223445554 4557776544322111
Q ss_pred -----CEEEEeecCC---C---CC-------CCHHHHHHHHhccC-CCeEEEEEecC-CCceecccc----HHHHHHHHH
Q psy7357 104 -----MSVEPVSVRK---D---GT-------IDFSDLETKVKKNK-ETLSCLMITYP-STFGVFEEN----ITDVCELIH 159 (302)
Q Consensus 104 -----~~v~~i~~~~---~---g~-------iD~~~l~~~i~~~~-~~t~~V~i~~P-n~~G~~~~d----i~~I~~ia~ 159 (302)
..+..+|... . +. .+++++++.++++. +++++|++..- +..|.+. + ++++.++|+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~-~~~~yl~~l~~lc~ 249 (445)
T PRK09221 171 FGGLLPGVDHLPHTLDLPENAFSKGQPEHGAELADDLERLVALHDASTIAAVIVEPMAGSAGVLV-PPKGYLQRLREICD 249 (445)
T ss_pred cCCCCCCCeEeCCCccccccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCCCccc-CCHHHHHHHHHHHH
Confidence 1233344321 0 00 12467888887543 67888888752 4567776 4 999999999
Q ss_pred HhCCEEEEecCCcccccccCCC---Ccc--CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 160 EHGGQVYLDGANMNAQVGLCRP---GDY--GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 160 ~~g~llivD~a~~~~~~~~~~p---~~~--gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
++|+++|+|+++. +++..... ..+ .+|+++. .|.++ .|...+|.+++++++++.+
T Consensus 250 ~~g~llI~DEV~t-G~GRtG~~~~~~~~gv~PDi~~~--gK~l~----gG~~Pi~av~~~~~i~~~~ 309 (445)
T PRK09221 250 KHGILLIFDEVIT-GFGRLGAAFAAERFGVTPDIITF--AKGLT----NGAIPMGAVIASDEIYDAF 309 (445)
T ss_pred HcCCEEEEeehhh-CCCcCchhhHHHhcCCCCCEEEe--ccccc----cCcccceeeEEcHHHHHhh
Confidence 9999999999873 33211011 112 3589888 48775 2223477788887766654
No 346
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=98.93 E-value=4.5e-08 Score=96.17 Aligned_cols=184 Identities=16% Similarity=0.194 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHHHhC-CCe-eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHHHHHhCCCE---
Q psy7357 32 YEQLIGELETDLCEITG-YDK-ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPASAQMAGMS--- 105 (302)
Q Consensus 32 ~l~~~~e~~~~l~~l~g-~~~-~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~~~~~~g~~--- 105 (302)
..+...++.++|.+++. .+. ..++.++|++|+++++..++.|....|...+++||.. ...||.........|..
T Consensus 131 ~~~~~~~lae~L~~~~~~~~~~~v~f~~SGsEA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~ 210 (504)
T PLN02760 131 TTKPSLDLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPALH 210 (504)
T ss_pred CcHHHHHHHHHHHhhcCCCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhhc
Confidence 34567788888888853 322 2456789999988999988877543442234455544 46788765443322211
Q ss_pred ---------EEEeecCC-------CC------CCCHHHHHHHHh-ccCCCeEEEEEecC-CCceecccc---HHHHHHHH
Q psy7357 106 ---------VEPVSVRK-------DG------TIDFSDLETKVK-KNKETLSCLMITYP-STFGVFEEN---ITDVCELI 158 (302)
Q Consensus 106 ---------v~~i~~~~-------~g------~iD~~~l~~~i~-~~~~~t~~V~i~~P-n~~G~~~~d---i~~I~~ia 158 (302)
+..++.+. .. ....+++++++. ++++++++|+++.- ...|.+.++ +++|+++|
T Consensus 211 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc 290 (504)
T PLN02760 211 QKFDLPAPFVLHTDCPHYWRFHLPGETEEEFSTRLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVL 290 (504)
T ss_pred cCCCCCCCCcEEeCCCcccccCCCCCcHHHHHHHHHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHH
Confidence 22233211 00 011356777774 33356778777642 355777622 99999999
Q ss_pred HHhCCEEEEecCCc-ccccc-cCCCCc--cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 159 HEHGGQVYLDGANM-NAQVG-LCRPGD--YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 159 ~~~g~llivD~a~~-~~~~~-~~~p~~--~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
+++|+++|+|+++. ++..+ ...-.. ..+|++++ .|.++. |.-.+|.+++++++++.+
T Consensus 291 ~~~g~lLI~DEV~TGfGRtG~~~a~e~~gv~PDivtl--gK~lgg----G~~PigAv~~~~~i~d~~ 351 (504)
T PLN02760 291 KKYDILFIADEVICAFGRLGTMFGCDKYNIKPDLVSL--AKALSS----AYMPIGAVLVSPEISDVI 351 (504)
T ss_pred HHcCCEEEecchhhCCcccchhhHHHhcCCCCcEEEe--cccccC----CccccceEeecHHHHhhh
Confidence 99999999999872 22111 100011 23799888 487762 222366688888877765
No 347
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=98.92 E-value=9.9e-08 Score=92.68 Aligned_cols=176 Identities=16% Similarity=0.183 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHhCCC--eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEE-cCCCCcccHHHHHhCC-------
Q psy7357 34 QLIGELETDLCEITGYD--KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLI-PVSAHGTNPASAQMAG------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~--~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv-~~~~hg~~~~~~~~~g------- 103 (302)
+...++.++|++++.-. ...++.+||++|+++++...|.+ ..+++|+. ....||.+.......+
T Consensus 97 ~~~~~la~~L~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~------tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~ 170 (451)
T PRK06918 97 EPYIELAEKLAALAPGSFDKKVLFLNSGAEAVENAVKIARKY------TKRQGIISFSRGFHGRTLMTMTMTSKVKPYKF 170 (451)
T ss_pred HHHHHHHHHHHHhCCCCCCCEEEEcCCcHHHHHHHHHHHHHH------hCCCcEEEECCCcCccchhhhhhcCCCccccc
Confidence 55678888899988532 23567889999988998888876 23444554 4567887755443222
Q ss_pred ------CEEEEeecCC-----CCCCC-------HHHHHHHHhc--cCCCeEEEEEecCC-Cceecc--c-cHHHHHHHHH
Q psy7357 104 ------MSVEPVSVRK-----DGTID-------FSDLETKVKK--NKETLSCLMITYPS-TFGVFE--E-NITDVCELIH 159 (302)
Q Consensus 104 ------~~v~~i~~~~-----~g~iD-------~~~l~~~i~~--~~~~t~~V~i~~Pn-~~G~~~--~-di~~I~~ia~ 159 (302)
-.+..+|... .+..+ ++.+++.+.+ ..+++++|+++--. ..|.+. + .+++|.++|+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~ 250 (451)
T PRK06918 171 GFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICS 250 (451)
T ss_pred cCCCCCCCcEEcCCCccccccccCchHHHHHHHHHHHHHHHHhhcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHH
Confidence 1133344321 11111 2334444421 23567777776422 346542 1 3899999999
Q ss_pred HhCCEEEEecCCc-ccccc-cCCCCccC--CcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 160 EHGGQVYLDGANM-NAQVG-LCRPGDYG--SDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 160 ~~g~llivD~a~~-~~~~~-~~~p~~~g--aDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
++|+++|.|.++. ++..+ ......++ +|++++ .|+++ +|.++|++++++++++.+.
T Consensus 251 ~~gillI~DEV~tg~gr~g~~~a~~~~~v~pDi~t~--sK~l~-----~G~pig~v~~~~~i~~~~~ 310 (451)
T PRK06918 251 EHGILFVADEIQTGFARTGKYFAIEHFDVVPDLITV--SKSLG-----AGVPISGVIGRKEIMDESA 310 (451)
T ss_pred HcCCEEEEeccccCcCccCceehhHhcCCCCCEEee--ehhhc-----CCCccEEEEEcHHHHhccC
Confidence 9999999999863 21111 11112233 787766 48776 3689999999988776653
No 348
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=98.92 E-value=5.2e-08 Score=94.34 Aligned_cols=179 Identities=21% Similarity=0.250 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHhC--CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHHHHHhCC-------
Q psy7357 34 QLIGELETDLCEITG--YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPASAQMAG------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g--~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~~~~~~g------- 103 (302)
+...++.+++++++. ++. .++.+|||+|+++++...+.|...++...+.+||.- ...||.........|
T Consensus 89 ~~~~~la~~l~~~~p~~~~~-v~f~~sGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~ 167 (442)
T PRK13360 89 PKAFELANRIAEIAPGGLNH-VFFTNSGSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKA 167 (442)
T ss_pred HHHHHHHHHHHHhCCCCCCE-EEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhc
Confidence 445678888888873 444 456789999988999888877433332234555544 457786544322111
Q ss_pred -----CEEEEeecCCC---CCC----------CHHHHHHHHhcc-CCCeEEEEEecC-CCceecccc----HHHHHHHHH
Q psy7357 104 -----MSVEPVSVRKD---GTI----------DFSDLETKVKKN-KETLSCLMITYP-STFGVFEEN----ITDVCELIH 159 (302)
Q Consensus 104 -----~~v~~i~~~~~---g~i----------D~~~l~~~i~~~-~~~t~~V~i~~P-n~~G~~~~d----i~~I~~ia~ 159 (302)
-.+..+|...+ ... +++++++.+..+ .+++++|++..- ...|.+. + +++|+++|+
T Consensus 168 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~aavivEpi~g~~G~~~-~~~~fl~~lr~lc~ 246 (442)
T PRK13360 168 FGALLPGVDHLPHTLDLARNAFSKGQPEHGAELADELERLVTLHDASTIAAVIVEPVAGSTGVLI-PPKGYLQRLREICD 246 (442)
T ss_pred cCCCCCCCEEeCCCchhhccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCcc-CCHHHHHHHHHHHH
Confidence 12334443211 000 256888888643 356777777653 3557776 5 999999999
Q ss_pred HhCCEEEEecCCcccccccCCC---C--ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 160 EHGGQVYLDGANMNAQVGLCRP---G--DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 160 ~~g~llivD~a~~~~~~~~~~p---~--~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
++|+++|+|+++. +++..... . ...+|++++ .|.++. |.-.+|.+++++++++.+
T Consensus 247 ~~g~llI~DEv~t-G~GrtG~~~a~~~~gv~PDivt~--gK~l~g----G~~P~gav~~~~~i~~~~ 306 (442)
T PRK13360 247 KHGILLIFDEVIT-GFGRLGAPFAAQYFGVTPDLLTC--AKGLTN----GAIPMGAVFVSSEIHDAF 306 (442)
T ss_pred HcCCEEEEechhh-CCCCCccchhhhhcCCCCceeee--eecccc----CccceEEEEEcHHHHHHh
Confidence 9999999999873 22211111 1 123688887 487752 222366677787766544
No 349
>PRK06105 aminotransferase; Provisional
Probab=98.91 E-value=6.4e-08 Score=94.20 Aligned_cols=182 Identities=14% Similarity=0.154 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHhCCCe-eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEE-cCCCCcccHHHHHhCC--------
Q psy7357 34 QLIGELETDLCEITGYDK-ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLI-PVSAHGTNPASAQMAG-------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~-~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv-~~~~hg~~~~~~~~~g-------- 103 (302)
+...++.++|++++.-+. ..++.+||++|+++++..++.+...++...+.+||. ....||.+.......+
T Consensus 92 ~~~~~lae~L~~~~p~~~~~v~f~~SGseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~ 171 (460)
T PRK06105 92 GPVIDLAEKLVAMAPVPMSKVFFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSF 171 (460)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCccccccc
Confidence 556778889999875432 245678999998899988776654444223455554 4567887654322111
Q ss_pred ----CEEEEeecCCC------CC-------CCHHHHHHHHhc-cCCCeEEEEEecC-CCceeccc---cHHHHHHHHHHh
Q psy7357 104 ----MSVEPVSVRKD------GT-------IDFSDLETKVKK-NKETLSCLMITYP-STFGVFEE---NITDVCELIHEH 161 (302)
Q Consensus 104 ----~~v~~i~~~~~------g~-------iD~~~l~~~i~~-~~~~t~~V~i~~P-n~~G~~~~---di~~I~~ia~~~ 161 (302)
..+..+|.... +. .+++++++++.+ ..+++++|++..- ...|.+.+ -+++++++|+++
T Consensus 172 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~ 251 (460)
T PRK06105 172 DLPLDRILHTGCPHYYRFGLPGESEEAFATRLANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKY 251 (460)
T ss_pred CCCCCCCEEcCCCcccccccCCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHc
Confidence 11233332210 00 124678888753 2357888888752 35566641 289999999999
Q ss_pred CCEEEEecCCc-ccccc-c--CCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 162 GGQVYLDGANM-NAQVG-L--CRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 162 g~llivD~a~~-~~~~~-~--~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
|+++|+|+++. ++..+ + ..--...+|+++. .|.++. |.-.+|.+++++++++.+
T Consensus 252 ~~llI~DEv~tG~GRtG~~f~~~~~~v~PDi~~~--gK~lgg----G~~P~~av~~~~~i~~~~ 309 (460)
T PRK06105 252 DILLVADEVICGFGRTGNMFGCETFGIKPDILVM--SKQLSS----SYQPLSAVLMNEKVYDPI 309 (460)
T ss_pred CCeEEEeccccCCCcCchhhhHHhcCCCCCeeee--eccccc----CcccceEEEEcHHHHHHH
Confidence 99999999873 22111 0 0001123799988 487762 222467777887776554
No 350
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=98.91 E-value=1.3e-07 Score=92.06 Aligned_cols=175 Identities=15% Similarity=0.080 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHhCCC-eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCE-EEEcCCCCcccHHHHHhCCC-------
Q psy7357 34 QLIGELETDLCEITGYD-KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNV-CLIPVSAHGTNPASAQMAGM------- 104 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~-~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~-Vlv~~~~hg~~~~~~~~~g~------- 104 (302)
+...++.++|+++++-. ...++.++|++|+++++..++.+ ..+.+ |......||.+.......|-
T Consensus 113 ~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~------tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~ 186 (459)
T PRK06082 113 ETAIECAEKLTEIAGGELNRVLFAPGGTSAIGMALKLARHI------TGNFKVVSLWDSFHGASLDAISVGGEACFRQGM 186 (459)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEECCCcHHHHHHHHHHHHHh------cCCCEEEEEeCCCcCccHHHHhhcCCcccccCC
Confidence 56678888999998632 23456889999988888877766 23344 44555678876543332221
Q ss_pred -----EEEEeecCCC-----CCC------CHHHHHHHHhccCCCeEEEEEecCCCceecccc---HHHHHHHHHHhCCEE
Q psy7357 105 -----SVEPVSVRKD-----GTI------DFSDLETKVKKNKETLSCLMITYPSTFGVFEEN---ITDVCELIHEHGGQV 165 (302)
Q Consensus 105 -----~v~~i~~~~~-----g~i------D~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~d---i~~I~~ia~~~g~ll 165 (302)
.+..+|.... ... +++++++.++++ +++++|+++.-...|.+.++ +++++++|+++|+++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~-~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~ll 265 (459)
T PRK06082 187 GPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEKE-GGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLL 265 (459)
T ss_pred CCCCCCCEEeCCCcccccccCChhHHHHHHHHHHHHHHhcC-CCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEE
Confidence 1233332110 011 146688888643 57888877643222443334 899999999999999
Q ss_pred EEecCCcccccccCCC---Cc--cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 166 YLDGANMNAQVGLCRP---GD--YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 166 ivD~a~~~~~~~~~~p---~~--~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
|+|+++. +++-.... .. ..+|+++. .|.++ .|.-.+|.+++++++.....
T Consensus 266 I~DEV~t-G~GRtG~~fa~e~~gv~PDiv~~--gKgl~----gG~~P~~av~~~~~i~~~~~ 320 (459)
T PRK06082 266 IIDEIPN-GMGRTGEWFTHQAYGIEPDILCI--GKGLG----GGLVPIAAMITKDKYNTAAQ 320 (459)
T ss_pred EEechhh-CCCccchhhHhHhhCCCCCEEEe--ccccc----CCCCcceEEEEcHHHHhhcc
Confidence 9999874 22211000 11 23799987 58776 23224777777877665443
No 351
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=98.91 E-value=7.1e-08 Score=93.81 Aligned_cols=177 Identities=18% Similarity=0.188 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHhCCCe-eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHHHHHhCCCEEEE---
Q psy7357 34 QLIGELETDLCEITGYDK-ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPASAQMAGMSVEP--- 108 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~-~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~~~~~~g~~v~~--- 108 (302)
+...++.++|++++.-+. ..++.+|||+|+++++...|.+... +.+.+|+.. ...||.+.......+-....
T Consensus 124 ~~~~~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~t~~---~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~ 200 (459)
T PRK11522 124 PLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSP---RGKFTFIATSGAFHGKSLGALSATAKSTFRKPF 200 (459)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCchHHHHHHHHHHHHHhcc---CCCcEEEEecCCCCCCcHHHhhhcCCcccccCC
Confidence 456677888888875322 3456789999988998888876311 123455555 45788776544433211111
Q ss_pred eecCCCC----CCCHHHHHHHHhc---cCCCeEEEEEecC-CCceecccc---HHHHHHHHHHhCCEEEEecCCcccccc
Q psy7357 109 VSVRKDG----TIDFSDLETKVKK---NKETLSCLMITYP-STFGVFEEN---ITDVCELIHEHGGQVYLDGANMNAQVG 177 (302)
Q Consensus 109 i~~~~~g----~iD~~~l~~~i~~---~~~~t~~V~i~~P-n~~G~~~~d---i~~I~~ia~~~g~llivD~a~~~~~~~ 177 (302)
.|..++- .-|.+++++.+++ +.+++++|++..- +..|.+.++ ++++.++|+++|+++|+|+++. +++.
T Consensus 201 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~t-G~GR 279 (459)
T PRK11522 201 MPLLPGFRHVPFGNIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQT-GMGR 279 (459)
T ss_pred CCCCCCCcccCCCCHHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEecccee-cCCc
Confidence 1111110 1278889888863 2356788887753 455776521 9999999999999999999983 3321
Q ss_pred cCC---CCcc--CCcEEEeCCCcccCCCCCCCC-CcceeEEEeCCCCCCC
Q psy7357 178 LCR---PGDY--GSDVSHLNLHKTFCIPHGGGG-PGMGPIGVKSHLAPFL 221 (302)
Q Consensus 178 ~~~---p~~~--gaDiv~~~~hK~l~~p~~~gG-p~~G~l~~~~~l~~~l 221 (302)
... ...+ .+|+++. .|.|+ || -.+|.+++++++++.+
T Consensus 280 tG~~~a~e~~gv~PDivt~--gK~lg-----gG~~Pigav~~~~~i~~~~ 322 (459)
T PRK11522 280 TGKMFACEHENVQPDILCL--AKALG-----GGVMPIGATIATEEVFSVL 322 (459)
T ss_pred cchhhhhhccCCCCCEEEe--chhhh-----CCCccceeEEEcHHHHHHh
Confidence 110 0112 3699887 48776 34 2366666776666544
No 352
>PRK06917 hypothetical protein; Provisional
Probab=98.90 E-value=1.5e-07 Score=91.23 Aligned_cols=180 Identities=15% Similarity=0.115 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHhCCC-eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcC-CCCcccHHHHHhCCC-------
Q psy7357 34 QLIGELETDLCEITGYD-KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPV-SAHGTNPASAQMAGM------- 104 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~-~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~-~~hg~~~~~~~~~g~------- 104 (302)
+...++.++|++++.-. ...++.++||+|+++++...+.|+..++...+++|+.-+ ..||.+.......+.
T Consensus 74 ~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~ 153 (447)
T PRK06917 74 EPAEKLAKKLSDLSPGDLNWSFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRF 153 (447)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccccC
Confidence 55668888999988543 234567899999889988888776545534456666554 578877554432221
Q ss_pred -----EEEEeecCC--C---CC-------CCHHHHHHHHhccC-CCeEEEEEecC-C-Cceeccc---cHHHHHHHHHHh
Q psy7357 105 -----SVEPVSVRK--D---GT-------IDFSDLETKVKKNK-ETLSCLMITYP-S-TFGVFEE---NITDVCELIHEH 161 (302)
Q Consensus 105 -----~v~~i~~~~--~---g~-------iD~~~l~~~i~~~~-~~t~~V~i~~P-n-~~G~~~~---di~~I~~ia~~~ 161 (302)
.+..+|... . +. -|++.+++.++++. +++++|+++-- . .-|++.+ -++++.++|+++
T Consensus 154 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~ 233 (447)
T PRK06917 154 VSLLEDYPTISAPYCYRCPVQKVYPTCQLACATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHY 233 (447)
T ss_pred CCCCCCCeEeCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHc
Confidence 122222211 0 00 13567888887553 46888888742 2 3345422 389999999999
Q ss_pred CCEEEEecCCcccccccCCC---C--ccCCcEEEeCCCcccCCCCCCCCC-cceeEEEeCCCCCCC
Q psy7357 162 GGQVYLDGANMNAQVGLCRP---G--DYGSDVSHLNLHKTFCIPHGGGGP-GMGPIGVKSHLAPFL 221 (302)
Q Consensus 162 g~llivD~a~~~~~~~~~~p---~--~~gaDiv~~~~hK~l~~p~~~gGp-~~G~l~~~~~l~~~l 221 (302)
|+++|+|+++. +++-.... . ...+|+++. .|.++ ||- .+|.+++++++++.+
T Consensus 234 g~llI~DEv~t-GfGRtG~~~a~~~~gv~PDi~~~--gK~l~-----~G~~Pi~a~~~~~~i~~~~ 291 (447)
T PRK06917 234 DILFIADEVMT-GLGRTGAMFAMEHWGVEPDIMTL--GKGLG-----AGYTPIAATVVSDRVMEPI 291 (447)
T ss_pred CCEEEEechhh-CcCcccchhhHHhcCCCCCEEEe--eehhc-----cCCcceEEEEEcHHHHHHH
Confidence 99999999874 33211100 0 123699988 48776 342 377788887776654
No 353
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=98.90 E-value=2e-07 Score=87.25 Aligned_cols=183 Identities=19% Similarity=0.178 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHHhCCCee-eEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcC-CCCcccHHHHHhC--------
Q psy7357 33 EQLIGELETDLCEITGYDKI-SFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPV-SAHGTNPASAQMA-------- 102 (302)
Q Consensus 33 l~~~~e~~~~l~~l~g~~~~-~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~-~~hg~~~~~~~~~-------- 102 (302)
.+...++.++|+++++-... .+...||++|+++++..++.++..+..+.+.+|+... ..||.........
T Consensus 58 ~~~~~~la~~L~~~~p~~~~~v~f~~sGseAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~ 137 (339)
T PF00202_consen 58 HPEAAELAEKLAELFPGGLDRVFFANSGSEAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKG 137 (339)
T ss_dssp EHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTT
T ss_pred ccchhhhhhhhhhccccccceeeeccCchHHHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCcccccc
Confidence 35677889999999943332 4457899999888888877554433324556666555 5677664432211
Q ss_pred ----CCEEEEeecCCCCC-----CCHHHHHHHHh-ccCCCeEEEEEecC-CCceecc---ccHHHHHHHHHHhCCEEEEe
Q psy7357 103 ----GMSVEPVSVRKDGT-----IDFSDLETKVK-KNKETLSCLMITYP-STFGVFE---ENITDVCELIHEHGGQVYLD 168 (302)
Q Consensus 103 ----g~~v~~i~~~~~g~-----iD~~~l~~~i~-~~~~~t~~V~i~~P-n~~G~~~---~di~~I~~ia~~~g~llivD 168 (302)
.-.+..+|.+.... ...+++++.+. .+.+++++|+++-- ...|.+. +-+++|.++|+++|+++|+|
T Consensus 138 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~D 217 (339)
T PF00202_consen 138 FGPLYPGVVFVPFPDPAADEEEQACLNALEELIAALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIAD 217 (339)
T ss_dssp TCSSSTTEEEEETTCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEE
T ss_pred ccccccccccccCCccchhhhHHHHHHHHHHHHHhhcCCcEEEEEEeccccccCccccccchhhehcccccccccceecc
Confidence 12456677642110 01122333332 22367888888752 3445442 13799999999999999999
Q ss_pred cCCcccccccCCCC-----ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 169 GANMNAQVGLCRPG-----DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 169 ~a~~~~~~~~~~p~-----~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
+++. +++-..... ...+|+++.+ |+|+ ||-.+|.+++++++.+.+..
T Consensus 218 EV~t-G~gRtG~~~a~~~~gv~PDiv~~g--K~l~-----gG~p~sav~~~~~i~~~~~~ 269 (339)
T PF00202_consen 218 EVQT-GFGRTGKFFASEHYGVDPDIVTFG--KGLG-----GGLPISAVLGSEEIMEAFQP 269 (339)
T ss_dssp ETTT-TTTTTSSSSGHHHHTSSSSEEEEE--GGGG-----TTSSEEEEEEEHHHHTTSCT
T ss_pred cccc-cccccCCccceecccccCcccccc--cchh-----hhhhcccccccchhhccccc
Confidence 9863 222111111 1247999994 9887 35778889999988877743
No 354
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=98.90 E-value=8.4e-08 Score=92.45 Aligned_cols=174 Identities=15% Similarity=0.196 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHhCCCe--eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCC--------C-
Q psy7357 36 IGELETDLCEITGYDK--ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAG--------M- 104 (302)
Q Consensus 36 ~~e~~~~l~~l~g~~~--~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g--------~- 104 (302)
..++.++++++.+.+. ..+..+||++|+++++..++.+. ++++.|.+....||.........+ +
T Consensus 86 ~~~la~~l~~~~~~~~~~~~~f~~sGsea~e~Alklar~~~-----~r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~ 160 (425)
T PRK08088 86 YLELCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAAT-----KRSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMG 160 (425)
T ss_pred HHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHHh-----CCCeEEEECCccCCccHHHHHhhCCCCccccCCC
Confidence 3477888888877532 45678899998878888777652 345566666668887755333211 1
Q ss_pred ------EEEEeecCCCCC-C--CHHHHHHHHhc--cCCCeEEEEEecC-CCceecc---ccHHHHHHHHHHhCCEEEEec
Q psy7357 105 ------SVEPVSVRKDGT-I--DFSDLETKVKK--NKETLSCLMITYP-STFGVFE---ENITDVCELIHEHGGQVYLDG 169 (302)
Q Consensus 105 ------~v~~i~~~~~g~-i--D~~~l~~~i~~--~~~~t~~V~i~~P-n~~G~~~---~di~~I~~ia~~~g~llivD~ 169 (302)
....+|.+.++. . +++++++++++ +.+++++|+++.. +..|.+. ..+++|.++|+++|+++|.|.
T Consensus 161 ~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~De 240 (425)
T PRK08088 161 LMPGHVYRALYPCPLHGVSEDDAIASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADE 240 (425)
T ss_pred CCCCCcEEcCCCccccCccHHHHHHHHHHHHHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEec
Confidence 111123222221 1 15678888862 2356777776542 2334432 148999999999999999999
Q ss_pred CCccccc--c-cCCCCcc--CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 170 ANMNAQV--G-LCRPGDY--GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 170 a~~~~~~--~-~~~p~~~--gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
++. +++ + ....... -+|+.++ .|+++ +|.++|++++++++++.+.
T Consensus 241 v~~-g~g~~g~~~~~~~~~~~pdi~s~--sK~l~-----~G~rig~v~~~~~~~~~~~ 290 (425)
T PRK08088 241 VQT-GAGRTGTLFAMEQMGVAADLTTF--AKSIA-----GGFPLAGVTGRAEVMDAIA 290 (425)
T ss_pred ccc-CCCcCcchhHHhhcCCCCCEEEE--ecccc-----CCCcceeeEecHHHHhhcC
Confidence 864 221 1 1010112 2566665 58886 3688999999988776654
No 355
>PRK06062 hypothetical protein; Provisional
Probab=98.89 E-value=9.8e-08 Score=92.68 Aligned_cols=173 Identities=18% Similarity=0.176 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHhC--CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHHHHHhCCC------
Q psy7357 34 QLIGELETDLCEITG--YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPASAQMAGM------ 104 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g--~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~~~~~~g~------ 104 (302)
+...++.++|++++. ++. .++.+|||+|+++++...|.+ ..+.+|+.. ...||.+.......+.
T Consensus 95 ~~~~~lae~L~~~~p~~~~~-v~f~~SGsEAve~AlklAr~~------tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~ 167 (451)
T PRK06062 95 DARSEAARLIAERAPGDLSK-VFFTNGGADANEHAVRMARLH------TGRPKVLSAYRSYHGGTGSAINLTGDPRRWPN 167 (451)
T ss_pred HHHHHHHHHHHHhCCCCCCE-EEEcCChHHHHHHHHHHHHHh------hCCceEEEEeCCCCCCCHHHHhhcCCcccccC
Confidence 445677888888874 333 456789999988888888876 334555544 4678877554432221
Q ss_pred -----EEEEeecCCCC------CCC-------HHHHHHHHhcc-CCCeEEEEEecC-CCceecccc----HHHHHHHHHH
Q psy7357 105 -----SVEPVSVRKDG------TID-------FSDLETKVKKN-KETLSCLMITYP-STFGVFEEN----ITDVCELIHE 160 (302)
Q Consensus 105 -----~v~~i~~~~~g------~iD-------~~~l~~~i~~~-~~~t~~V~i~~P-n~~G~~~~d----i~~I~~ia~~ 160 (302)
.+..++.+... .-| +++++++++.+ .+++++|++..- ..-|.+. + ++++.++|++
T Consensus 168 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAaviiEPv~g~gG~~~-p~~~yl~~lr~lc~~ 246 (451)
T PRK06062 168 DTGRAGVVHFFGPFLYRSEFHATTEEEECERALAHLERVIELEGPSTIAAILLESVPGTAGILV-PPPGYLAGVRELCDR 246 (451)
T ss_pred CCCCCCCEEeCCCCccccccCCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCccc-CCHHHHHHHHHHHHH
Confidence 12223221100 013 67888888643 256788887652 3457665 4 9999999999
Q ss_pred hCCEEEEecCCcccccccC-----CCCccCCcEEEeCCCcccCCCCCCCCC-cceeEEEeCCCCCCCC
Q psy7357 161 HGGQVYLDGANMNAQVGLC-----RPGDYGSDVSHLNLHKTFCIPHGGGGP-GMGPIGVKSHLAPFLP 222 (302)
Q Consensus 161 ~g~llivD~a~~~~~~~~~-----~p~~~gaDiv~~~~hK~l~~p~~~gGp-~~G~l~~~~~l~~~lp 222 (302)
+|+++|+|+++. +++... .--...+|++++ .|.++ ||- .+|.+++++++++.+.
T Consensus 247 ~g~lLI~DEV~t-GfGRtG~~~a~~~~gv~PDi~t~--gK~lg-----gG~~Pigav~~~~~i~~~~~ 306 (451)
T PRK06062 247 HGIVLIADEVMA-GFGRTGKWFAIEHFGVVPDLITF--AKGVN-----SGYVPLGGVAISEAIAATFA 306 (451)
T ss_pred cCCEEEeecccc-CCCcCcHHHHHHhcCCCCCeeee--chhhh-----cCCcCcEEEEEcHHHHHHhc
Confidence 999999999874 222110 001124799987 58776 342 3666777777766553
No 356
>PRK07481 hypothetical protein; Provisional
Probab=98.88 E-value=8.1e-08 Score=93.21 Aligned_cols=179 Identities=18% Similarity=0.174 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHhC---CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHHHHHhCC------
Q psy7357 34 QLIGELETDLCEITG---YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPASAQMAG------ 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g---~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~~~~~~g------ 103 (302)
+...++.++|+++++ ++. .++.+|||+|+++++...|.|....|...+++|+.. ...||.+.......+
T Consensus 86 ~~~~~lae~L~~~~~~~~~~~-v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~ 164 (449)
T PRK07481 86 PRAIELSYELIDMFAPEGMRR-VFFSSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRR 164 (449)
T ss_pred HHHHHHHHHHHHhcCCCCCCE-EEEcCchHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCccccc
Confidence 455678888888873 343 456788999988999988887644443334555544 457886654332111
Q ss_pred ------CEEEEeecCCC-----CCCCHHH--------HHHHHh-ccCCCeEEEEEecC-CCceeccc---cHHHHHHHHH
Q psy7357 104 ------MSVEPVSVRKD-----GTIDFSD--------LETKVK-KNKETLSCLMITYP-STFGVFEE---NITDVCELIH 159 (302)
Q Consensus 104 ------~~v~~i~~~~~-----g~iD~~~--------l~~~i~-~~~~~t~~V~i~~P-n~~G~~~~---di~~I~~ia~ 159 (302)
..+..++.+.. +..|+++ +++.+. ++++++++|++.-- ...|++.+ -+++++++|+
T Consensus 165 ~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~ 244 (449)
T PRK07481 165 NYEPLLPGCFHVETPWLYRNPFTEQDPEELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCD 244 (449)
T ss_pred ccCCCCCCCEEeCCCcccccccCCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHH
Confidence 11233332110 0124444 344443 33467899888753 34566542 2899999999
Q ss_pred HhCCEEEEecCCcccccccC-----CCCccCCcEEEeCCCcccCCCCCCCC-CcceeEEEeCCCCCCC
Q psy7357 160 EHGGQVYLDGANMNAQVGLC-----RPGDYGSDVSHLNLHKTFCIPHGGGG-PGMGPIGVKSHLAPFL 221 (302)
Q Consensus 160 ~~g~llivD~a~~~~~~~~~-----~p~~~gaDiv~~~~hK~l~~p~~~gG-p~~G~l~~~~~l~~~l 221 (302)
++|+++|+|+++. +++-.. .--...+|+++. .|.++ || -.+|.+++++++++.+
T Consensus 245 ~~g~llI~DEV~t-GfGRtG~~~a~~~~gv~PDiv~~--gKgl~-----gG~~Pi~av~~~~~i~~~~ 304 (449)
T PRK07481 245 RHGILLIADEVVT-GFGRTGSWFGSRGWGVKPDIMCL--AKGIT-----SGYVPLGATMVNARIADAF 304 (449)
T ss_pred HcCCEEEEeehhh-CcCcCchhhHhhhcCCCCCEEEE--eeccc-----CCCcCceEEEEcHHHHHHH
Confidence 9999999999863 221110 001123799998 48876 34 2477888888776655
No 357
>PRK07480 putative aminotransferase; Validated
Probab=98.87 E-value=1.4e-07 Score=91.65 Aligned_cols=181 Identities=19% Similarity=0.224 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHhCCCe-eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHHHHHhCCC-------
Q psy7357 34 QLIGELETDLCEITGYDK-ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPASAQMAGM------- 104 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~-~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~~~~~~g~------- 104 (302)
+...++.++|++++..+. ..++.+||++|+++++..+|.|...+|...+++||.- ...||.+.......|.
T Consensus 94 ~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~ 173 (456)
T PRK07480 94 PPAIELAAKLAEVAPPGFNHVFFTNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMHEQG 173 (456)
T ss_pred HHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhhhccc
Confidence 566778888888875322 2456789999988999988887644443335555554 4578866443222111
Q ss_pred -----EEEEeecCCC--C--CCC--------HHHHHHHHh-ccCCCeEEEEEecC-CCceeccc---cHHHHHHHHHHhC
Q psy7357 105 -----SVEPVSVRKD--G--TID--------FSDLETKVK-KNKETLSCLMITYP-STFGVFEE---NITDVCELIHEHG 162 (302)
Q Consensus 105 -----~v~~i~~~~~--g--~iD--------~~~l~~~i~-~~~~~t~~V~i~~P-n~~G~~~~---di~~I~~ia~~~g 162 (302)
.+..++.+.. . ..+ ++.+++.+. ...+++++|+++.- ...|++.+ -+++++++|+++|
T Consensus 174 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g 253 (456)
T PRK07480 174 DLPIPGIVHIDQPYWFGEGGDMTPEEFGLAAARQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYD 253 (456)
T ss_pred CCCCCCCeecCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcC
Confidence 1222332110 0 011 366666553 33467888888753 34566642 2899999999999
Q ss_pred CEEEEecCCc-ccccc-cCCCC--ccCCcEEEeCCCcccCCCCCCCCC-cceeEEEeCCCCCCC
Q psy7357 163 GQVYLDGANM-NAQVG-LCRPG--DYGSDVSHLNLHKTFCIPHGGGGP-GMGPIGVKSHLAPFL 221 (302)
Q Consensus 163 ~llivD~a~~-~~~~~-~~~p~--~~gaDiv~~~~hK~l~~p~~~gGp-~~G~l~~~~~l~~~l 221 (302)
+++|+|+++. ++..+ ...-. ...+|++++ .|.++ ||- .+|.+++++++++.+
T Consensus 254 ~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~--gK~l~-----gG~~Pi~av~~~~~i~~~~ 310 (456)
T PRK07480 254 ILLVADEVICGFGRTGEWFGSQHFGIKPDLMTI--AKGLT-----SGYIPMGAVGVGDRVAEVL 310 (456)
T ss_pred CEEEEechhhCCCcCcchhhhhhcCCCCCeeee--ehhhc-----cCCccceEEEEcHHHHHHH
Confidence 9999999873 21111 00001 123699988 48776 342 367777787776655
No 358
>KOG1360|consensus
Probab=98.87 E-value=6.7e-08 Score=89.56 Aligned_cols=238 Identities=16% Similarity=0.145 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeec
Q psy7357 32 YEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSV 111 (302)
Q Consensus 32 ~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~ 111 (302)
..+...+++..|++|.+-+.+-++ +|.=.|+-+.+..+... =++-+|...+.-|.+-..-.+..+++-.. +
T Consensus 214 ~s~~hv~LE~eLA~LHqK~aALlF-sSCfVANDstLftLak~------lpgcei~SD~gNHASMI~GIrns~v~K~I--F 284 (570)
T KOG1360|consen 214 HSKHHVRLEAELADLHQKEAALLF-SSCFVANDSTLFTLAKK------LPGCEIFSDEGNHASMIQGIRNSRVPKHI--F 284 (570)
T ss_pred CCchhhhHHHHHHHHhcCcceeee-eeeeeccchHHHHHHHH------CCCcEEeccccchHHHHHHhhhcCCccee--e
Confidence 334557788889999887765332 22323343444443321 24555443333332222222222322111 1
Q ss_pred CCCCCCCHHHHHHHHhccCC-CeEEEEEecC-CCceeccccHHHHHHHHHHhCCEEEEecCCccccccc------CCCCc
Q psy7357 112 RKDGTIDFSDLETKVKKNKE-TLSCLMITYP-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGL------CRPGD 183 (302)
Q Consensus 112 ~~~g~iD~~~l~~~i~~~~~-~t~~V~i~~P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~------~~p~~ 183 (302)
-.-|+++|++++.+..+ .++.|-++.- +-.|.+. |++||++++|++|++.++|++|..++-+- .++|-
T Consensus 285 ---rHND~~hL~~lL~~~~~svPKivAFEtVhSM~Gavc-pleelcDvah~yGAiTFlDEVHAVGlYG~rGaGvgerdGv 360 (570)
T KOG1360|consen 285 ---RHNDLDHLEQLLQSSPKSVPKIVAFETVHSMDGAVC-PLEELCDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDGV 360 (570)
T ss_pred ---ccCCHHHHHHHHHhCCCCCCceEEEeeeeccCCCcC-CHHHHHHHHHHhCceeeeehhhhhccccCCCCCccccCCc
Confidence 24599999999976433 3455666654 5679999 79999999999999999999987665332 11221
Q ss_pred -cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCC----CCCCcccCCCCcc---hhhhHHHHhhHh---hH----H
Q psy7357 184 -YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPF----LPVHPLSSIDSSI---GAVSAAHYGSAS---IL----P 248 (302)
Q Consensus 184 -~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~----lpg~~~~~~~~~l---~~~~a~~~~~~~---~~----~ 248 (302)
...||+++++.|.|+. -+|||+....+++. -+|.||..+-.+. +++.|--++--. .+ +
T Consensus 361 m~kvDiIsGTLgKafGc-------VGGYIAat~~LvDmiRSyAaGFIFTTSLPP~vl~GAleaVr~lk~~eg~~lR~~hq 433 (570)
T KOG1360|consen 361 MHKVDIISGTLGKAFGC-------VGGYIAATRKLVDMIRSYAAGFIFTTSLPPMVLAGALEAVRILKSEEGRVLRRQHQ 433 (570)
T ss_pred chhhhhcccchhhhccc-------ccceehhhhhHHHHHHHhcCceEEecCCChHHHHhHHHHHHHHhhhhhHHHHHHHH
Confidence 2479999988888863 24899988876654 3788875322211 233322222211 11 2
Q ss_pred HHHHHHHH-Hh-cccccccccCCCcceeEEEEEEeccccccCCCCHHHHHHHhh
Q psy7357 249 ISWAYIRR-LE-SHYKTLFRSSRSGLVAHEFVIDVRDFKKSANIEAVDIAKRLM 300 (302)
Q Consensus 249 ~~~~y~~~-l~-~g~~~~~~~~~~~~~~he~~~~~~~~~~~~g~~~~~~~~~l~ 300 (302)
++..|+++ |. .|++++-. | +|.+-+.+.+- --.+++.+.|+
T Consensus 434 rnv~~~kq~l~~~GiPVi~~-p-----SHIiPv~vgda-----~l~~~~sd~Li 476 (570)
T KOG1360|consen 434 RNVKYVKQLLMELGIPVIPN-P-----SHIIPVRVGDA-----ALAKQASDILI 476 (570)
T ss_pred HHHHHHHHHHHHcCCcccCC-C-----cceeeeeccCH-----HHHHHHHHHHH
Confidence 23357774 44 69998743 2 89988887642 12445555555
No 359
>PRK06149 hypothetical protein; Provisional
Probab=98.85 E-value=1.8e-07 Score=98.81 Aligned_cols=174 Identities=19% Similarity=0.263 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHh--CCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhC-------CC
Q psy7357 34 QLIGELETDLCEIT--GYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMA-------GM 104 (302)
Q Consensus 34 ~~~~e~~~~l~~l~--g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~-------g~ 104 (302)
+...++.++|++++ +++. .++.+||++|+++++..++.+. ++++.|.+....||.+....... +.
T Consensus 624 ~~~~elae~L~~~~p~~~~~-v~f~~SGsEA~e~AlklAr~~t-----gr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~ 697 (972)
T PRK06149 624 AAVAEFSERLAALAPDGLDT-VFLVNSGSEANDLAIRLAWAAS-----GRRDVVSVLEAYHGWTVATDAVSTSIADNPQA 697 (972)
T ss_pred HHHHHHHHHHHHhCCCCcCE-EEEeCCchHHHHHHHHHHHHhc-----CCCeEEEEeCCCCCcChhHhhhcCCccccccc
Confidence 45678889999988 4554 4567899999888888777662 23344445556788664321110 00
Q ss_pred ------EEEEeecCC--CC---CCC-----HHHHHHHHh---ccCCCeEEEEEecC-CCceecccc----HHHHHHHHHH
Q psy7357 105 ------SVEPVSVRK--DG---TID-----FSDLETKVK---KNKETLSCLMITYP-STFGVFEEN----ITDVCELIHE 160 (302)
Q Consensus 105 ------~v~~i~~~~--~g---~iD-----~~~l~~~i~---~~~~~t~~V~i~~P-n~~G~~~~d----i~~I~~ia~~ 160 (302)
.+..++... .+ ..| .+++++.++ ++.+++++|+++.- ...|.+. + ++++.++|++
T Consensus 698 ~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~-~p~~yL~~l~~lc~~ 776 (972)
T PRK06149 698 LETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEELDASGRGLAGFICEPVYGNAGGIA-LPPGYLQQVYAAVRA 776 (972)
T ss_pred cCCCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHHHhhcCCceEEEEEcccccCCCccc-CCHHHHHHHHHHHHH
Confidence 123333221 11 112 345444443 23467888887642 4457665 4 9999999999
Q ss_pred hCCEEEEecCCcccccccCCC------CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 161 HGGQVYLDGANMNAQVGLCRP------GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 161 ~g~llivD~a~~~~~~~~~~p------~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+|+++|+|+++. +++..... -...+||++. .|.++ ||-.+|.+++++++++.+.
T Consensus 777 ~g~llI~DEV~t-GfGRtG~~~~a~e~~gv~PDivt~--gK~lg-----~G~Pl~av~~~~~i~~~~~ 836 (972)
T PRK06149 777 RGGVCIADEVQV-GYGRLGHYFWGFEQQGVVPDIITM--AKGMG-----NGHPLGAVITRREIAEALE 836 (972)
T ss_pred cCCEEEEEeehh-cCCccCccchhhhhcCCCCCEEEe--ccccc-----CCeeeEEEEEcHHHHhhhc
Confidence 999999999872 33221110 0123799987 48775 2445788999988877664
No 360
>PRK07483 hypothetical protein; Provisional
Probab=98.85 E-value=2.8e-07 Score=89.28 Aligned_cols=177 Identities=16% Similarity=0.192 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHhC--CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEE-cCCCCcccHHHHHhCCC------
Q psy7357 34 QLIGELETDLCEITG--YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLI-PVSAHGTNPASAQMAGM------ 104 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g--~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv-~~~~hg~~~~~~~~~g~------ 104 (302)
+...++.++|++++. .+. .++.+|||+|+++++...|.|...+|...+.+|+. ....||.+.......|-
T Consensus 73 ~~~~~lae~L~~~~p~~~~~-v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~ 151 (443)
T PRK07483 73 EPAEALADRLVAAAPAGLEH-VYFVSGGSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRREP 151 (443)
T ss_pred HHHHHHHHHHHHhCCCCCCE-EEEcCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccccc
Confidence 455678888888874 444 45678999998899998888765444333455555 55688877554332211
Q ss_pred ------EEEEeecCCCC-CC------------CHHHHHHHHhc-cCCCeEEEEEecCC--Cceeccc---cHHHHHHHHH
Q psy7357 105 ------SVEPVSVRKDG-TI------------DFSDLETKVKK-NKETLSCLMITYPS--TFGVFEE---NITDVCELIH 159 (302)
Q Consensus 105 ------~v~~i~~~~~g-~i------------D~~~l~~~i~~-~~~~t~~V~i~~Pn--~~G~~~~---di~~I~~ia~ 159 (302)
.+..+|..... .. .++++++++.+ +.+++++|++..-- .-|.+.+ -+++++++|+
T Consensus 152 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~ 231 (443)
T PRK07483 152 FAPLLIEAHHVSPCYAYREQRAGESDEAYGQRLADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCD 231 (443)
T ss_pred cCCCCCCCEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHH
Confidence 12333321100 00 13667776642 34678888887422 2365532 3899999999
Q ss_pred HhCCEEEEecCCcccccccCCCC--------ccCCcEEEeCCCcccCCCCCCCCC-cceeEEEeCCCCCCCC
Q psy7357 160 EHGGQVYLDGANMNAQVGLCRPG--------DYGSDVSHLNLHKTFCIPHGGGGP-GMGPIGVKSHLAPFLP 222 (302)
Q Consensus 160 ~~g~llivD~a~~~~~~~~~~p~--------~~gaDiv~~~~hK~l~~p~~~gGp-~~G~l~~~~~l~~~lp 222 (302)
++|+++|+|+++. +++ +.| ...+|+++. .|.++ ||- .+|.+++++++++.+.
T Consensus 232 ~~gillI~DEV~t-GfG---RtG~~~a~~~~gv~PDiv~~--gK~l~-----gG~~Pi~av~~~~~i~~~~~ 292 (443)
T PRK07483 232 RYGVLLILDEVMC-GMG---RTGTLFACEEDGVAPDLVTI--AKGLG-----AGYQPIGAVLASDRIYDAIA 292 (443)
T ss_pred HhCCEEEEeccee-Ccc---cCcHHHHHhhcCCCCCeeee--hhhhc-----cCccccEEEEEcHHHHHHHh
Confidence 9999999999873 222 122 123799998 48876 352 4788888888776553
No 361
>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.
Probab=98.84 E-value=1.2e-07 Score=91.46 Aligned_cols=179 Identities=15% Similarity=0.114 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHhCCCe-eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEE-EcCCCCcccHHHHHhCCC---------
Q psy7357 36 IGELETDLCEITGYDK-ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCL-IPVSAHGTNPASAQMAGM--------- 104 (302)
Q Consensus 36 ~~e~~~~l~~l~g~~~-~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vl-v~~~~hg~~~~~~~~~g~--------- 104 (302)
..++.++++++++-+. ..+...+|++|+++++...+.+...++...+.+|| .....||.+.......+-
T Consensus 90 ~~~la~~l~~~~~~~~~~v~f~~sGseA~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~ 169 (427)
T TIGR00508 90 AIELCQKLVKMTPNALDCVFLADSGSVAVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYK 169 (427)
T ss_pred HHHHHHHHHhhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCccccccccc
Confidence 4456666777765332 34567889999888888877765433322344444 445677766443332221
Q ss_pred ----EEEEeecCCC-C-----CCCHHHHHHHHhccCCCeEEEEEec--CCCceecc---ccHHHHHHHHHHhCCEEEEec
Q psy7357 105 ----SVEPVSVRKD-G-----TIDFSDLETKVKKNKETLSCLMITY--PSTFGVFE---ENITDVCELIHEHGGQVYLDG 169 (302)
Q Consensus 105 ----~v~~i~~~~~-g-----~iD~~~l~~~i~~~~~~t~~V~i~~--Pn~~G~~~---~di~~I~~ia~~~g~llivD~ 169 (302)
.+..+|.... . .-|++++++.+.++.+++++|++.. ....|... ..+++++++|+++|+++|+|+
T Consensus 170 ~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DE 249 (427)
T TIGR00508 170 GYLPEQIFAPAPQNRFDEEWNEEAITPLAKLMELHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADE 249 (427)
T ss_pred ccCCCCeEcCCCCccccchhHHHHHHHHHHHHHhcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEec
Confidence 1122222111 0 1267888888876556788888774 22334421 269999999999999999999
Q ss_pred CCcccccccC---CCC--ccCCcEEEeCCCcccCCCCCCCC-CcceeEEEeCCCCCCCC
Q psy7357 170 ANMNAQVGLC---RPG--DYGSDVSHLNLHKTFCIPHGGGG-PGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 170 a~~~~~~~~~---~p~--~~gaDiv~~~~hK~l~~p~~~gG-p~~G~l~~~~~l~~~lp 222 (302)
++ .+++... ... ...+|+++. .|.|+ || ..++.++.++++.+.+.
T Consensus 250 v~-tG~Gr~G~~~~~~~~~v~pDi~~~--gK~l~-----gG~~p~~a~~~~~~~~~~~~ 300 (427)
T TIGR00508 250 IA-TGFGRTGKLFACEHAGVVPDILCV--GKALT-----GGYMTLSATVTTDKVAQTIS 300 (427)
T ss_pred cc-cCCCcCCccchhhhcCCCCCEEEe--chhhh-----cCcccceEEEEcHHHHHHHh
Confidence 97 3332111 111 124788886 58874 45 35677888777665553
No 362
>PRK07036 hypothetical protein; Provisional
Probab=98.83 E-value=1.7e-07 Score=91.42 Aligned_cols=181 Identities=16% Similarity=0.225 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHhCCCe-eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcccHHHHHhCC--------
Q psy7357 34 QLIGELETDLCEITGYDK-ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGTNPASAQMAG-------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~-~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~~~~~~~~~g-------- 103 (302)
+...++.++|++++.-+. ..++.+|||+|+++++...+.+...+|...+.+|+.- ...||.+.......+
T Consensus 95 ~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~ 174 (466)
T PRK07036 95 APAAELAAKLAELAPGDLNHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEF 174 (466)
T ss_pred HHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCcccccc
Confidence 455677778888764321 2456789999988888888877544443334565554 457886644332211
Q ss_pred ----CEEEEeecCC-----CCC-------CCHHHHHHHHhc-cCCCeEEEEEecC-CCceecccc---HHHHHHHHHHhC
Q psy7357 104 ----MSVEPVSVRK-----DGT-------IDFSDLETKVKK-NKETLSCLMITYP-STFGVFEEN---ITDVCELIHEHG 162 (302)
Q Consensus 104 ----~~v~~i~~~~-----~g~-------iD~~~l~~~i~~-~~~~t~~V~i~~P-n~~G~~~~d---i~~I~~ia~~~g 162 (302)
..+..+|... .+. ..++.+++.+.+ .++++++|+++.- ...|.+.++ ++++.++|+++|
T Consensus 175 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g 254 (466)
T PRK07036 175 DYASDLVHHLSSPNPYRRPAGMSEAAFCDFLVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYD 254 (466)
T ss_pred cCCCCCcEEecCCcccccccCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcC
Confidence 1133444321 011 013456666653 3467888888753 345766522 899999999999
Q ss_pred CEEEEecCCc-ccccc-cCCCC---ccCCcEEEeCCCcccCCCCCCCC-CcceeEEEeCCCCCCC
Q psy7357 163 GQVYLDGANM-NAQVG-LCRPG---DYGSDVSHLNLHKTFCIPHGGGG-PGMGPIGVKSHLAPFL 221 (302)
Q Consensus 163 ~llivD~a~~-~~~~~-~~~p~---~~gaDiv~~~~hK~l~~p~~~gG-p~~G~l~~~~~l~~~l 221 (302)
+++|+|+++. ++..+ +.... ...+|+++. .|.++ || -.+|.+++++++++.+
T Consensus 255 ~llI~DEV~tGfGRtG~~~~~~~~~gv~PDivt~--gK~l~-----gG~~Pi~av~~~~~i~~~~ 312 (466)
T PRK07036 255 ILYISDEVVTGFGRLGHFFASEAVFGIQPDIITF--AKGLT-----SGYQPLGAVIISERLLDVI 312 (466)
T ss_pred CEEEEeechhCCCcCchhhhhhhhcCCCCCEEEE--ccccc-----cCccccEEEEEcHHHHHHH
Confidence 9999999873 21211 10001 124699998 48876 35 2477788888876654
No 363
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=98.81 E-value=4.9e-07 Score=88.10 Aligned_cols=167 Identities=18% Similarity=0.196 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHhCCC-----eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEE-cCCCCcccHHHHHhCC----
Q psy7357 34 QLIGELETDLCEITGYD-----KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLI-PVSAHGTNPASAQMAG---- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~-----~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv-~~~~hg~~~~~~~~~g---- 103 (302)
+...++.+++++++.-+ ...+..+|||+|+++++...|.+ ..+++|+. ....||.+.......+
T Consensus 106 ~~~~~la~~L~~~~p~~~~~~~~v~f~~~SGSEAve~AlklAr~~------tgr~~ii~~~~~yHG~t~~als~t~~~~~ 179 (464)
T PRK06938 106 PVKDQFVQDLFASLPEAFAREAKIQFCGPTGTDAVEAALKLVKTA------TGRSTVLSFQGGYHGMSQGALSLMGNLGP 179 (464)
T ss_pred HHHHHHHHHHHHhCcccccccceEEEeCCCcHHHHHHHHHHHHHh------hCCCeEEEECCccCCccHHHHhhcCCccc
Confidence 34445666777765422 22222369999988888887765 33455554 4567887655433211
Q ss_pred --------CEEEEeecCCCCC------------CCHHHHHHHHhccC---CCeEEEEEecC-CCceeccc---cHHHHHH
Q psy7357 104 --------MSVEPVSVRKDGT------------IDFSDLETKVKKNK---ETLSCLMITYP-STFGVFEE---NITDVCE 156 (302)
Q Consensus 104 --------~~v~~i~~~~~g~------------iD~~~l~~~i~~~~---~~t~~V~i~~P-n~~G~~~~---di~~I~~ 156 (302)
-.+..+|.+.... .+++.+++.+++.. +++++|++.-- ..-|++.+ -++++.+
T Consensus 180 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~ 259 (464)
T PRK06938 180 KKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRR 259 (464)
T ss_pred cccCCCCCCCcEEeCCCccccccccCchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHH
Confidence 1244555432110 13678888886422 36888887642 34466532 3899999
Q ss_pred HHHHhCCEEEEecCCcccccccCCCC--------ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCC
Q psy7357 157 LIHEHGGQVYLDGANMNAQVGLCRPG--------DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHL 217 (302)
Q Consensus 157 ia~~~g~llivD~a~~~~~~~~~~p~--------~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l 217 (302)
+|+++|+++|+|+++. +++ +.| ...+|+++. .|.++ ||-.+|.+++++++
T Consensus 260 lc~~~giLlI~DEV~t-GfG---RtG~~~a~e~~gv~PDiv~~--gKglg-----gG~PlsAv~~~~~~ 317 (464)
T PRK06938 260 ITEEAGIPLIVDEIQS-GFG---RTGKMFAFEHAGIIPDVVVL--SKAIG-----GSLPLAVVVYREWL 317 (464)
T ss_pred HHHHcCCEEEEecccc-CCC---cCcHHHHHHhcCCCCCEEEe--ecccc-----CCCceEEEeehhHh
Confidence 9999999999999863 221 112 123799998 48775 34457888888775
No 364
>KOG1402|consensus
Probab=98.78 E-value=2.5e-07 Score=83.93 Aligned_cols=172 Identities=19% Similarity=0.266 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHH-hhcCCCCC-EEEEc-CCCCcccHHHH---------HhC
Q psy7357 35 LIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQ-AQDAHHRN-VCLIP-VSAHGTNPASA---------QMA 102 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~-~~g~~~~d-~Vlv~-~~~hg~~~~~~---------~~~ 102 (302)
..-++.+.+.++||.+.+ +.++.|++|.+.++..+|.|.- ..+..+.. +|+.. +..||...... +..
T Consensus 102 ~~~~f~~~vt~lf~~~kv-lpmnTGaEa~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~~f 180 (427)
T KOG1402|consen 102 VLGEFAEYVTKLFGYDKV-LPMNTGAEAVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLSTDPDSWDGF 180 (427)
T ss_pred hHHHHHHHHHHhcCccee-eecccchhHHHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEecCCcchhhcc
Confidence 456777889999998875 4578899887788888886532 22211122 33333 34666543321 111
Q ss_pred C----CEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC-CCceecccc---HHHHHHHHHHhCCEEEEecCCccc
Q psy7357 103 G----MSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP-STFGVFEEN---ITDVCELIHEHGGQVYLDGANMNA 174 (302)
Q Consensus 103 g----~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~d---i~~I~~ia~~~g~llivD~a~~~~ 174 (302)
| ..+..||+ -|.++|+.++++ ++.+++++.-- ..-|++.|| +++++++|.+|+.++|.|+.|. +
T Consensus 181 gp~~P~~~~~v~Y-----~d~eale~~l~~--~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQT-G 252 (427)
T KOG1402|consen 181 GPFLPGVVDKVPY-----GDAEALEVALKS--PNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQT-G 252 (427)
T ss_pred CCCCCCcceeecc-----CCHHHHHHHhcC--CCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhh-c
Confidence 1 12444554 389999999984 77888777642 367887433 8999999999999999999873 2
Q ss_pred ccccCCCCc--------cCCcEEEeCCCcccCCCCCCCCC-cceeEEEeCCCCC-CCCCCc
Q psy7357 175 QVGLCRPGD--------YGSDVSHLNLHKTFCIPHGGGGP-GMGPIGVKSHLAP-FLPVHP 225 (302)
Q Consensus 175 ~~~~~~p~~--------~gaDiv~~~~hK~l~~p~~~gGp-~~G~l~~~~~l~~-~lpg~~ 225 (302)
+ .+.|. ...|++.. .|.|+ ||- .+..++++++++- .=||..
T Consensus 253 l---~RTGk~la~d~env~PDivil--gKalS-----GG~~Pvsavl~~~~im~~~~pgeH 303 (427)
T KOG1402|consen 253 L---ARTGKLLACDYENVRPDIVIL--GKALS-----GGVYPVSAVLADDDIMLNIKPGEH 303 (427)
T ss_pred c---cccCcEEEeehhhcCCCeEEE--ecccc-----CCeeeeEEEEecHHHHhccCCCcc
Confidence 2 22332 34799998 59887 453 3444555555544 335543
No 365
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=98.77 E-value=5.3e-07 Score=87.74 Aligned_cols=171 Identities=17% Similarity=0.240 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHhCCC----eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEE-cCCCCcccHHHHHhCC-----
Q psy7357 34 QLIGELETDLCEITGYD----KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLI-PVSAHGTNPASAQMAG----- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~----~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv-~~~~hg~~~~~~~~~g----- 103 (302)
+...++.+++++++... ...+..+|||+|+++++...|.+ +.+++|+. ....||.+.......+
T Consensus 101 ~~~~~lAe~L~~~~p~~~~~~~~~f~~~SGsEAve~AlklAr~~------tgr~~Ii~~~~~yHG~t~~als~t~~~~~~ 174 (459)
T PRK06931 101 PLKDAFSEYLLSLLPGQGKEYCLQFTGPSGADAVEAAIKLAKTY------TGRSNVISFSGGYHGMTHGALAVTGNLSPK 174 (459)
T ss_pred HHHHHHHHHHHHhCCCccccceEEEeCCCcHHHHHHHHHHHHHh------cCCCeEEEECCCcCCccHHHHhhcCCcccc
Confidence 45567888888887532 12344579999988888888876 34555554 4567887755442111
Q ss_pred -------CEEEEeecCCCC--------CCCHHHH----HHHHhc---cCCCeEEEEEecC-CCceeccc---cHHHHHHH
Q psy7357 104 -------MSVEPVSVRKDG--------TIDFSDL----ETKVKK---NKETLSCLMITYP-STFGVFEE---NITDVCEL 157 (302)
Q Consensus 104 -------~~v~~i~~~~~g--------~iD~~~l----~~~i~~---~~~~t~~V~i~~P-n~~G~~~~---di~~I~~i 157 (302)
-.+..+|..... .-|.+.+ ++.+++ ..+++++|++.-- ...|++.+ -++++.++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~l 254 (459)
T PRK06931 175 NAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREV 254 (459)
T ss_pred cCCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHH
Confidence 123444442110 1123333 333331 2246888888642 34465532 38999999
Q ss_pred HHHhCCEEEEecCCc-ccccc-cCC--CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCC
Q psy7357 158 IHEHGGQVYLDGANM-NAQVG-LCR--PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHL 217 (302)
Q Consensus 158 a~~~g~llivD~a~~-~~~~~-~~~--p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l 217 (302)
|+++|+++|+|+++. ++..+ +.. --...+|+++. .|.++ ||-.+|.++.++++
T Consensus 255 c~~~g~LlI~DEV~tGfGRtG~~~a~~~~gv~PDivt~--gK~l~-----gG~Pi~av~~~~~~ 311 (459)
T PRK06931 255 TQKHGILLIVDEVQAGFARTGKMFAFEHAGIEPDIIVM--SKAVG-----GGLPLAVLGIKKEF 311 (459)
T ss_pred HHHcCCEEEEecchhcCCcCchHHHhhhcCCCCCEEEe--ccccc-----CCcceeeeeeHHHH
Confidence 999999999999863 21111 000 01124799998 48876 34446777777654
No 366
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=98.76 E-value=3.1e-08 Score=88.76 Aligned_cols=188 Identities=17% Similarity=0.290 Sum_probs=115.6
Q ss_pred ccCCCCCCCcccccHHHHHHHHHHHHHHHhCCCe--eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc-CCCCcc
Q psy7357 18 TNMHPFIPQDQARGYEQLIGELETDLCEITGYDK--ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP-VSAHGT 94 (302)
Q Consensus 18 t~~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~--~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~-~~~hg~ 94 (302)
.+...|.. +||...+++.+..++.+-+|.+. .|+..+.||+..+ ...+..+...+.....++|+.| .|+|-.
T Consensus 65 e~~cnY~~---pQG~~~li~ala~~l~~~ygwnit~~NIalTnGSQs~f--FYlfNlF~G~~sdG~~k~illPLaPeYiG 139 (417)
T COG3977 65 EALCNYDG---PQGKAVLIDALAKMLRREYGWNITAQNIALTNGSQSAF--FYLFNLFAGRRSDGTEKKILLPLAPEYIG 139 (417)
T ss_pred HHHhcCCC---CcchhHHHHHHHHHHHHHhCCCCccceeeecCCccchH--HHHHHHhcCccCCCcceeEeeccChhhcc
Confidence 34455644 79999999999999999999764 5888889997431 1111111111111223466666 344433
Q ss_pred cHHHHH------hCCCEEEEeecCC-CCCCCHHHHHHHHhccCCCeEEEEEecC-CCceec--cccHHHHHHHHHHhCCE
Q psy7357 95 NPASAQ------MAGMSVEPVSVRK-DGTIDFSDLETKVKKNKETLSCLMITYP-STFGVF--EENITDVCELIHEHGGQ 164 (302)
Q Consensus 95 ~~~~~~------~~g~~v~~i~~~~-~g~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~--~~di~~I~~ia~~~g~l 164 (302)
|....- ...=++..+|... ...+|.++|. +. +++.+|+++-| |+||.+ ++++.++.++|++||+.
T Consensus 140 Y~d~~l~~d~fVs~kP~iel~~~g~FKY~vDF~~l~--i~---e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giP 214 (417)
T COG3977 140 YADAGLEEDLFVSAKPNIELLPAGQFKYHVDFEHLH--IG---ESTGAICVSRPTNPTGNVLTDEELAKLDALARQHGIP 214 (417)
T ss_pred ccccccCccceeeccCCcccccccceeeccCHHHcc--cc---cccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCc
Confidence 322110 0011122122100 2368888874 33 78999999988 799976 33689999999999999
Q ss_pred EEEecCCccccccc----CCCCccCCcE-EEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 165 VYLDGANMNAQVGL----CRPGDYGSDV-SHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 165 livD~a~~~~~~~~----~~p~~~gaDi-v~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
+++|.|+...+.++ .+| -|+.++ .|.|++| ++.| |-|.|++.++++++..+
T Consensus 215 liIDnAYg~PFP~iifsd~~~-~w~~NiilC~SLSK-~GLP----G~R~GIiIane~viqai 270 (417)
T COG3977 215 LIIDNAYGVPFPGIIFSDATP-LWNENIILCMSLSK-LGLP----GSRCGIIIANEKVIQAI 270 (417)
T ss_pred EEEecccCCCCCceecccccc-cCCCCEEEEeehhh-cCCC----CcceeEEEccHHHHHHH
Confidence 99999875443332 112 355564 5566666 4444 77999999998765543
No 367
>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=98.75 E-value=6.7e-07 Score=86.95 Aligned_cols=160 Identities=13% Similarity=0.126 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHhC--CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCC---------------------CCCEEEE-cC
Q psy7357 34 QLIGELETDLCEITG--YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAH---------------------HRNVCLI-PV 89 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g--~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~---------------------~~d~Vlv-~~ 89 (302)
++.+++.+++++++. ++. .++.+|||+|+++++..++.|....++. ++.+||. ..
T Consensus 105 ~la~~l~~~l~~~~p~~~~~-v~f~~SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~ 183 (464)
T TIGR00699 105 DWAKILKEGILKVAPKGQDQ-VWTGMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKG 183 (464)
T ss_pred HHHHHHHHhHHhhCCCCcCE-EEEeCCcHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEECC
Confidence 344444444455653 333 4567899999889988887765322100 1224554 45
Q ss_pred CCCcccHHHHHhCC-----------CEEEEeecCCC----C----------CCCHHHHHHHHhccCCCeEEEEEecC-CC
Q psy7357 90 SAHGTNPASAQMAG-----------MSVEPVSVRKD----G----------TIDFSDLETKVKKNKETLSCLMITYP-ST 143 (302)
Q Consensus 90 ~~hg~~~~~~~~~g-----------~~v~~i~~~~~----g----------~iD~~~l~~~i~~~~~~t~~V~i~~P-n~ 143 (302)
..||.+.......+ ..+..+|.... + .-++++++++++++.+++++|+++.- ..
T Consensus 184 syHG~t~~als~t~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~iAAvI~EPv~g~ 263 (464)
T TIGR00699 184 AFHGRLFGSLSTTRSKPIHKLDIPAFDWPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKWHKPVAAIIVEPIQSE 263 (464)
T ss_pred CcCCccHHHHHhcCCccccccCCCCCCceecCCCCcccccccccccchhHHHHHHHHHHHHHHhcCCcEEEEEEeCCCCC
Confidence 57887765443222 11223333210 0 12467788888766678999988753 34
Q ss_pred ceecccc----HHHHHHHHHHhCCEEEEecCCcccccccCCC---Ccc----CCcEEEeCCCcccC
Q psy7357 144 FGVFEEN----ITDVCELIHEHGGQVYLDGANMNAQVGLCRP---GDY----GSDVSHLNLHKTFC 198 (302)
Q Consensus 144 ~G~~~~d----i~~I~~ia~~~g~llivD~a~~~~~~~~~~p---~~~----gaDiv~~~~hK~l~ 198 (302)
.|.+. + +++++++|+++|+++|+|+++ .+++..... ..+ .+|+++. .|.++
T Consensus 264 ~G~~~-~~~~yl~~lr~lc~~~g~lLI~DEV~-tGfGrtG~~fa~e~~gv~~~PDi~t~--gK~lg 325 (464)
T TIGR00699 264 GGDNH-ASPDFFRKLRDITKKHNVAFIVDEVQ-TGVGATGKFWAHEHWNLDDPPDMVTF--SKKFQ 325 (464)
T ss_pred CCCcC-CCHHHHHHHHHHHHHcCCEEEEeeee-eCCCCCcchhHHHhcCCCCCCCEEEe--hhhhc
Confidence 57665 4 999999999999999999987 333211100 011 2799888 48774
No 368
>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional
Probab=98.74 E-value=1.3e-07 Score=91.28 Aligned_cols=161 Identities=16% Similarity=0.162 Sum_probs=97.6
Q ss_pred HHHHHHHHHhC-CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc--CCCCcccHHHH----HhCCCE-----
Q psy7357 38 ELETDLCEITG-YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP--VSAHGTNPASA----QMAGMS----- 105 (302)
Q Consensus 38 e~~~~l~~l~g-~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~--~~~hg~~~~~~----~~~g~~----- 105 (302)
++.++|++++. .+. .++.+||++|+++++...|.| ..+.+|+.. ...|+.+..+. ...+..
T Consensus 92 ~la~~l~~~~p~~~~-v~f~~sGseA~e~AlklAr~~------tgr~~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~ 164 (431)
T PRK06209 92 DAAESFLELIDGADM-VKFCKNGSDATSAAVRLARAY------TGRDLVARCADHPFFSTDDWFIGTTPMSAGIPASVSA 164 (431)
T ss_pred HHHHHHHHhCCccce-EEEecCHHHHHHHHHHHHHHH------hCCCeEEEeccCccccccccccccCCCCCCCChhHhc
Confidence 66778888774 333 456889999988998888876 345565554 23333111110 000110
Q ss_pred -EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceecc--ccHHHHHHHHHHhCCEEEEecCCcccccccC--C
Q psy7357 106 -VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFE--ENITDVCELIHEHGGQVYLDGANMNAQVGLC--R 180 (302)
Q Consensus 106 -v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~--~di~~I~~ia~~~g~llivD~a~~~~~~~~~--~ 180 (302)
+..++ .-|+++++++++++.+++++|++.. - .|... ..+++|.++|+++|+++|+|+++ .+..... .
T Consensus 165 ~~~~~~-----~~d~~~l~~~l~~~~~~~aavi~Ep-v-~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~-tG~~~~~~g~ 236 (431)
T PRK06209 165 LTVTFR-----YNDIASLEALFEDHPGRIACVILEP-A-TADEPQDGFLHEVRRLCHENGALFILDEMI-TGFRWHMRGA 236 (431)
T ss_pred cccccC-----CCCHHHHHHHHHhCCCCEEEEEEcc-c-cCCCCCHHHHHHHHHHHHHcCCEEEEEccc-ccCCcCcchh
Confidence 11111 2389999999976555777777753 2 23321 14999999999999999999987 3332110 0
Q ss_pred C--CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCC
Q psy7357 181 P--GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPF 220 (302)
Q Consensus 181 p--~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~ 220 (302)
. -...+|+++. .|.++ ||-.+|.+++++++++.
T Consensus 237 ~~~~gv~PDi~t~--gK~lg-----gG~p~~av~~~~~i~~~ 271 (431)
T PRK06209 237 QKLYGIVPDLSCF--GKALG-----NGFAVSALAGKREYMEL 271 (431)
T ss_pred hHHhCCCcceeee--hhhhc-----CCcccEEEEEHHHHHhh
Confidence 0 0123688777 58776 24447788888776654
No 369
>KOG1404|consensus
Probab=98.74 E-value=8e-08 Score=88.85 Aligned_cols=179 Identities=17% Similarity=0.193 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHhCCCe-eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecC
Q psy7357 34 QLIGELETDLCEITGYDK-ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVR 112 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~-~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~ 112 (302)
+.+.++.+.|.+++--+. +.++.+||++|++.+++.++.|. +.-|.|-..+..||.....+...+.....-+++
T Consensus 92 ~pi~~~Ae~L~s~~P~~l~~vfF~nsGsEANelal~mar~Yt-----~~~diIa~r~~YHG~t~~t~glt~~~~~k~~~~ 166 (442)
T KOG1404|consen 92 PPIHDLAEALVSKLPGDLKVVFFVNSGSEANELALKMARLYT-----GNLDIIARRNSYHGNTLYTLGLTGLSPWKQNFP 166 (442)
T ss_pred CcHHHHHHHHHHhCCCCceEEEEecCCchHHHHHHHHHHHhc-----CCceEEEeeccccCCchhhcccccCCcccccCC
Confidence 456777887777765443 46678999999889998888884 345666667778887776554333322222111
Q ss_pred -------------C-CC----C-----CC--HHHHHHHHhccCCCeEEEEEecC--CCceeccc---cHHHHHHHHHHhC
Q psy7357 113 -------------K-DG----T-----ID--FSDLETKVKKNKETLSCLMITYP--STFGVFEE---NITDVCELIHEHG 162 (302)
Q Consensus 113 -------------~-~g----~-----iD--~~~l~~~i~~~~~~t~~V~i~~P--n~~G~~~~---di~~I~~ia~~~g 162 (302)
+ .+ . .| .+++++.+....+.+.+-++..| ..-|++++ -+++..++|+++|
T Consensus 167 ~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~G 246 (442)
T KOG1404|consen 167 GVASGVHHTMNPDPYRGIFGGSNEEEASDRYAKELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRG 246 (442)
T ss_pred CCCCcccccCCCCcccccCCCCchhhhHHHHHHHHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHHHHHcC
Confidence 0 01 0 11 24455555433344444455443 35677763 3899999999999
Q ss_pred CEEEEecCCcccccccCC-----CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCc
Q psy7357 163 GQVYLDGANMNAQVGLCR-----PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHP 225 (302)
Q Consensus 163 ~llivD~a~~~~~~~~~~-----p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~ 225 (302)
.++|.|+++. +++.... --..-.||++.. |+++. |-.+|.+++.++++..+..+.
T Consensus 247 gl~IaDEVqt-GfGRtG~~wgfe~h~v~PDIvTmA--KgiGn-----G~Pl~AVvtt~EIa~v~~~~~ 306 (442)
T KOG1404|consen 247 GLFIADEVQT-GFGRTGHMWGFESHGVVPDIVTMA--KGIGN-----GFPLGAVVTTPEIADVLNQKS 306 (442)
T ss_pred CEEEehhhhh-ccccccccccccccCCCccHHHHH--hhccC-----CCcceeeecCHHHHHHHHhcc
Confidence 9999999873 2221111 011125898884 88873 467888888888877765554
No 370
>KOG0258|consensus
Probab=98.74 E-value=7.6e-08 Score=88.90 Aligned_cols=138 Identities=19% Similarity=0.265 Sum_probs=107.5
Q ss_pred cccccHHHHHHHHHHHHHHHhCC--CeeeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCC
Q psy7357 27 DQARGYEQLIGELETDLCEITGY--DKISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAG 103 (302)
Q Consensus 27 e~sqG~l~~~~e~~~~l~~l~g~--~~~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g 103 (302)
..|||..-.++...+.+.+.=|. +..+++.++||. |. ..++.+. . ..+++-|++|-|-|+-|.+.....|
T Consensus 110 S~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai-~~il~l~--~----~~~~~GvliPiPQYPLYsAti~l~~ 182 (475)
T KOG0258|consen 110 SDSQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAI-RSILSLL--I----AGKKTGVLIPIPQYPLYSATISLLG 182 (475)
T ss_pred ccccCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHH-HHHHHHH--h----cCCCCceEeecCCCchhHHHHHHhC
Confidence 44999988888888888888774 335778888874 33 2233322 1 1467889999999998888888889
Q ss_pred CEEEEeecCC--CCCCCHHHHHHHHhccCC--CeEEEEEecC-CCceec--cccHHHHHHHHHHhCCEEEEecCC
Q psy7357 104 MSVEPVSVRK--DGTIDFSDLETKVKKNKE--TLSCLMITYP-STFGVF--EENITDVCELIHEHGGQVYLDGAN 171 (302)
Q Consensus 104 ~~v~~i~~~~--~g~iD~~~l~~~i~~~~~--~t~~V~i~~P-n~~G~~--~~di~~I~~ia~~~g~llivD~a~ 171 (302)
...+.+-+|+ +..+|.++|++.+++.++ +++++++-|| |+||.+ ++++++|..+|++.|..++.|.++
T Consensus 183 ~~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~~l~llaDEVY 257 (475)
T KOG0258|consen 183 GTQVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVLSEENIEGIICFAAEEGLVLLADEVY 257 (475)
T ss_pred CcccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhhcHHHHHHHHHHHHHcCeEEechHHH
Confidence 8888888876 468999999999986543 5678888888 899976 348999999999999999999874
No 371
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=98.71 E-value=1.2e-07 Score=85.08 Aligned_cols=193 Identities=20% Similarity=0.154 Sum_probs=133.5
Q ss_pred cccCCcCCccCCCCCCCcccccHHHHHHHHHHHHHHHhCCCee--eEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEE
Q psy7357 10 IPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKI--SFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLI 87 (302)
Q Consensus 10 ~~~~~~~ft~~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~~--~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv 87 (302)
+-.+...|+..+-|.-.+.- ++.+++-.++.||.+.+ ..+..||+.|.-+++..++ +++|+++.
T Consensus 47 ~rvs~~hf~~stGYGydD~G------RdtLe~vyA~vf~aE~a~VRpq~isGTHAI~~aLfg~L--------RpgDell~ 112 (416)
T COG4100 47 HRVSESHFTGSTGYGYDDLG------RDTLERVYAQVFGAEAALVRPQIISGTHAIACALFGIL--------RPGDELLY 112 (416)
T ss_pred cccchhccCCCCCCCccccc------hhHHHHHHHHHhccccceeeeeeecchhHHHHHHHhcc--------CCCCeEEE
Confidence 34556677777777653332 44566678899999864 5677799988766666655 68888653
Q ss_pred c-CCCCcccHH----------HHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCC-----CceeccccH
Q psy7357 88 P-VSAHGTNPA----------SAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPS-----TFGVFEENI 151 (302)
Q Consensus 88 ~-~~~hg~~~~----------~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-----~~G~~~~di 151 (302)
- ...|-+-.. +.+..|++..-+|+..+|.+|.+.+++.++ ++|++|-++-.. +.=.+. +|
T Consensus 113 i~G~PYDTLeevIG~rg~~~gSL~dfgi~Y~~v~Lt~~gkiD~~~v~~~i~---~~tkli~IQRS~GY~~RpS~~I~-eI 188 (416)
T COG4100 113 ITGSPYDTLEEVIGLRGEGQGSLKDFGIKYKAVPLTADGKIDIQAVKTAIS---DRTKLIGIQRSKGYAWRPSLSIA-EI 188 (416)
T ss_pred ecCCcchhHHHHhccCCCCcccHHHhCcceeecccccCCcccHHHHHHhcC---ccceEEEEEeccCcCCCCcccHH-HH
Confidence 2 222322221 345667888889998899999999999999 999999998532 111345 68
Q ss_pred HHHHHHHHHh--CCEEEEecCCcccccccCCCCccCCcEEEeCCCcccCCCCCCCCC--cceeEEEeCCCCCCCCCCcc
Q psy7357 152 TDVCELIHEH--GGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGP--GMGPIGVKSHLAPFLPVHPL 226 (302)
Q Consensus 152 ~~I~~ia~~~--g~llivD~a~~~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp--~~G~l~~~~~l~~~lpg~~~ 226 (302)
+++.+++++. +.+++||..+-. +..-..|-+.|+|++.+|+=|--+ ||- -.|+++.++++++...-|+.
T Consensus 189 ~~~i~~vk~inpn~ivFVDNCYGE-FvE~~EPt~vGaDliAGSLIKNpG-----GgiaktGGYiaGk~~~ve~~~yRlT 261 (416)
T COG4100 189 EEMITFVKEINPNVIVFVDNCYGE-FVEEKEPTHVGADLIAGSLIKNPG-----GGIAKTGGYIAGKAELVEAAAYRLT 261 (416)
T ss_pred HHHHHHHHhcCCCEEEEEeccchh-hhhccCccccchhhhccceeeCCC-----CceeeccceeechHHHHHhhceeee
Confidence 8888888875 678889965421 112245788899999998777332 332 57999999999887765554
No 372
>KOG1357|consensus
Probab=98.67 E-value=5.4e-08 Score=91.37 Aligned_cols=170 Identities=17% Similarity=0.208 Sum_probs=119.2
Q ss_pred ccHHHHHHHHHHHHHHHhCCCee-eEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEE
Q psy7357 30 RGYEQLIGELETDLCEITGYDKI-SFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEP 108 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~~-~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~ 108 (302)
-|+.+...|+++..++++|.+.+ .++++-++ +.+.+-++. .++.-|+..+..|.+...-++..|+.++.
T Consensus 178 ~G~~~~hkelE~l~A~f~g~e~a~vF~mGf~T--Ns~~~p~l~--------~~gsLIiSDelNHaSi~~GaRLSgAtiRV 247 (519)
T KOG1357|consen 178 AGTTEEHKELEELVARFLGVEDAIVFSMGFAT--NSMNIPSLL--------GKGSLIISDELNHASLITGARLSGATTRV 247 (519)
T ss_pred cccHHHHHHHHHHHHHhcCCcceEEEeccccc--cccCcceee--------cCCcceeeccccchheeccccccCceEEE
Confidence 58889999999999999999876 44444444 312222333 57777676667777776677888998888
Q ss_pred eecCCCCCCCHHHHHHHHhcc----CCCe-----EEEEEec-C-CCceeccccHHHHHHHHHHhCCEEEEecCCcccccc
Q psy7357 109 VSVRKDGTIDFSDLETKVKKN----KETL-----SCLMITY-P-STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVG 177 (302)
Q Consensus 109 i~~~~~g~iD~~~l~~~i~~~----~~~t-----~~V~i~~-P-n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~ 177 (302)
..-+ |+.+||+.|++. .|+| +.+++.. - +--|.+. +++++.++.+++.+++++|+||.++..+
T Consensus 248 fkHN-----dm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv-~Lp~vvalkkkykayl~lDEAHSiGA~g 321 (519)
T KOG1357|consen 248 FRHN-----DMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIV-DLPEVVALKKKYKAYLYLDEAHSIGAMG 321 (519)
T ss_pred EecC-----CHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeec-ccHHHHHhhccccEEEEeeccccccccC
Confidence 8763 677777777532 2333 2333333 1 2357888 8999999999999999999999765542
Q ss_pred c--------CCCCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 178 L--------CRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 178 ~--------~~p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
- ..++...+||+.+.+.|+|+ ..+|+++.++++++.+.
T Consensus 322 ~tGrgvce~~g~d~~dvDImMGtftKSfg-------a~GGyiagsk~lid~lr 367 (519)
T KOG1357|consen 322 ATGRGVCEYFGVDPEDVDIMMGTFTKSFG-------AAGGYIAGSKELIDYLR 367 (519)
T ss_pred CCCcceeeccCCCchhheeecceehhhcc-------cccceecCcHHHHhhhc
Confidence 1 12233457999998888775 45689999988877663
No 373
>KOG0634|consensus
Probab=98.66 E-value=3e-07 Score=86.10 Aligned_cols=133 Identities=19% Similarity=0.205 Sum_probs=94.6
Q ss_pred cccHHHHHHHHHHHHHHHhCCCe---eeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYDK---ISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~---~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~ 104 (302)
++|..+++..+.+.....+..+. -.+..++|. .+.+-+++.+. +++|.|++-...|.+-....+..|+
T Consensus 99 s~G~peLl~fik~h~~~~ih~p~~~~wdiiit~G~t~~l~~~l~~~~--------N~gd~vlie~~ty~~AL~s~~a~gv 170 (472)
T KOG0634|consen 99 SSGIPELLLFIKDHNRPTIHAPPYKNWDIIITNGNTDGLFKVLRTLI--------NRGDHVLIEEYTYPSALQSMEALGV 170 (472)
T ss_pred ccCcHHHHHHHHHhccccccCCCCCCceEEEecCCchHHHHHHHHhh--------cCCCceEEecccchHHHHhccccCc
Confidence 78888888887775554455443 145556665 55556666554 7899999998876655566778898
Q ss_pred EEEEeecCCCCCCCHHHHHHHHhccCC------CeEEEEEecC---CCceec--cccHHHHHHHHHHhCCEEEEecCC
Q psy7357 105 SVEPVSVRKDGTIDFSDLETKVKKNKE------TLSCLMITYP---STFGVF--EENITDVCELIHEHGGQVYLDGAN 171 (302)
Q Consensus 105 ~v~~i~~~~~g~iD~~~l~~~i~~~~~------~t~~V~i~~P---n~~G~~--~~di~~I~~ia~~~g~llivD~a~ 171 (302)
+++.|+.|.+| +|+|.|++.++..++ +.. |+-+-| |+||.- .+--++|.++|++|+.++|-|..+
T Consensus 171 ~~ipv~md~~G-i~pE~l~~il~~w~~~~~k~~~p~-vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdpY 246 (472)
T KOG0634|consen 171 KIIPVKMDQDG-IDPESLEEILSNWKPGSYKKPKPH-VLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDPY 246 (472)
T ss_pred eEEeccccCCC-CCHHHHHHHHhcCCcccccCCCCe-EEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCcc
Confidence 88888887666 799999999975432 233 444434 688864 224689999999999999988765
No 374
>KOG1401|consensus
Probab=98.65 E-value=1.1e-06 Score=81.83 Aligned_cols=177 Identities=18% Similarity=0.266 Sum_probs=113.5
Q ss_pred HHHHHHHHHhC---CCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCC-EEEEcCCCCcccHHHHHhCCCEEEEeecCC
Q psy7357 38 ELETDLCEITG---YDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRN-VCLIPVSAHGTNPASAQMAGMSVEPVSVRK 113 (302)
Q Consensus 38 e~~~~l~~l~g---~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d-~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~ 113 (302)
++.+.+.+..+ .+. .++.+||++|+++++...|.+.......+.. .|-+-+..||.....+...+..-...|.++
T Consensus 102 ~l~~~l~~~~~~~~~~r-vff~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p 180 (433)
T KOG1401|consen 102 ELEEVLSAVLGKGSAER-VFFCNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDP 180 (433)
T ss_pred HHHHHHHhcccCCCccE-EEEecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccccCCCCCC
Confidence 34445555552 233 4568899999889988777653211101122 444556678866665554444444444432
Q ss_pred ---C---C-CCCHHHHHHHHhccCCCeEEEEEecC-CCceeccc---cHHHHHHHHHHhCCEEEEecCCcccccccCCC-
Q psy7357 114 ---D---G-TIDFSDLETKVKKNKETLSCLMITYP-STFGVFEE---NITDVCELIHEHGGQVYLDGANMNAQVGLCRP- 181 (302)
Q Consensus 114 ---~---g-~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~~---di~~I~~ia~~~g~llivD~a~~~~~~~~~~p- 181 (302)
+ . .-|+.++++.++.|++++++|+++-- ..-|++.. -+..+.++|+++|++||+|+++. +++.+..-
T Consensus 181 ~~p~v~~~~ynd~t~l~k~~~~h~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~t-G~gR~g~~~ 259 (433)
T KOG1401|consen 181 IAPDVVTAEYNDSTALEKLFESHKGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQT-GLGRLGYGW 259 (433)
T ss_pred CCCceeecccCCHHHHHHHHHhCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhh-CccccchHH
Confidence 1 1 35899999999998888999998753 25566622 47889999999999999999863 22211000
Q ss_pred --C--ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCC
Q psy7357 182 --G--DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV 223 (302)
Q Consensus 182 --~--~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg 223 (302)
. ..-+||.+. .|.|+ ||-.+|...++++.++.+.+
T Consensus 260 a~e~~~~~PDI~t~--aK~L~-----gGlPigA~~v~~kV~~~i~~ 298 (433)
T KOG1401|consen 260 AQEYFGVTPDITTV--AKPLG-----GGLPIGATGVRDKVAEMISP 298 (433)
T ss_pred HHHHhCcCCcceee--hhhcc-----CCceeEEEeehHHHHhhcCC
Confidence 0 123699887 47665 45789999999988887743
No 375
>PRK06148 hypothetical protein; Provisional
Probab=98.65 E-value=1.5e-06 Score=92.15 Aligned_cols=176 Identities=17% Similarity=0.205 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHhCCCe-eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEE-cCCCCcccHHHHHhCC--------
Q psy7357 34 QLIGELETDLCEITGYDK-ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLI-PVSAHGTNPASAQMAG-------- 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~-~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv-~~~~hg~~~~~~~~~g-------- 103 (302)
+...++.++|++++.-+. ..++.+|||+|+++++...|.+ ..+++||. ....||.+.......+
T Consensus 663 ~~~~~lAe~L~~~~p~~~~~v~f~nSGsEA~e~AlklAr~~------tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~ 736 (1013)
T PRK06148 663 DAIVAYAERLTATLPDGLTVAFFVNSGSEANSLALRLARAH------TGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGG 736 (1013)
T ss_pred HHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHh------cCCCeEEEEcCCccCCCcchhhcCchhhcccCC
Confidence 445677888888875321 2456789999988888888866 33444444 4567886643322111
Q ss_pred ----CEEEEeecCC--CCC---CC-------HHHHHHHHh---ccCCCeEEEEEecC-CCceeccc---cHHHHHHHHHH
Q psy7357 104 ----MSVEPVSVRK--DGT---ID-------FSDLETKVK---KNKETLSCLMITYP-STFGVFEE---NITDVCELIHE 160 (302)
Q Consensus 104 ----~~v~~i~~~~--~g~---iD-------~~~l~~~i~---~~~~~t~~V~i~~P-n~~G~~~~---di~~I~~ia~~ 160 (302)
-.+..++... .+. .| .+.+++.++ .+.+++++|+++.- ..-|.+.+ -++++.++|++
T Consensus 737 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~ 816 (1013)
T PRK06148 737 KGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRA 816 (1013)
T ss_pred CCCCCCceEcCCCCccccCCCCChhhhHHHHHHHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHH
Confidence 1122222110 000 11 244555553 33457888887742 34566541 38999999999
Q ss_pred hCCEEEEecCCc-ccccc--cCCCC--ccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCC
Q psy7357 161 HGGQVYLDGANM-NAQVG--LCRPG--DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 161 ~g~llivD~a~~-~~~~~--~~~p~--~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lp 222 (302)
+|+++|+|+++. ++..+ +.... ...+||++. .|.++ ||-.+|.+++++++++.+.
T Consensus 817 ~g~llI~DEVqtGfGRtG~~~~a~e~~gv~PDivt~--gK~lg-----gG~Plgav~~~~ei~~~~~ 876 (1013)
T PRK06148 817 AGGVCIADEVQVGFGRVGSHWWAFETQGVVPDIVTM--GKPIG-----NGHPMGAVVTTREIADSFD 876 (1013)
T ss_pred hCCEEEEEecccCCCCCCCcchhhhhcCCCcceeee--ccccc-----CCcceEEEEEcHHHHhhcc
Confidence 999999999873 22111 10001 123799998 58776 3445888888988877653
No 376
>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.
Probab=98.61 E-value=6.3e-08 Score=90.52 Aligned_cols=179 Identities=14% Similarity=0.104 Sum_probs=109.6
Q ss_pred HHHHHHHHHHhCCCe---eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCC
Q psy7357 37 GELETDLCEITGYDK---ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRK 113 (302)
Q Consensus 37 ~e~~~~l~~l~g~~~---~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~ 113 (302)
..+...+-++.|+.. +.+.|..+......++++++. + .+.+.|+.+...|-+-..++...|++++.||...
T Consensus 59 n~l~~d~~~~~G~~~~~~~~~vP~atgm~l~l~l~~l~~----r--~~a~~Viw~ridqkSc~kai~~AGl~~~vV~~~~ 132 (389)
T PF05889_consen 59 NSLVLDALRLAGLRSVKSCFVVPMATGMSLTLCLLALRM----R--PKAKYVIWPRIDQKSCFKAIERAGLEPVVVENVL 132 (389)
T ss_dssp HHHHHHHHHHTTHTTHCEEEEESS-HHHHHHHHHHHHHH----H--CT--EEEEEEEETHHHHHHHHHTT-EEEEE-EEE
T ss_pred HHHHHHHHHHcCCccccceEEEecccccHHHHHHHHHhc----c--cCCceEEEeeccccchHHHHHhcCCeEEEeeccC
Confidence 333344455678752 456666555444344555541 1 4678999999988766667888999999999532
Q ss_pred --CC-CCCHHHHHHHHhccCCCeEEEEEecCC-CceeccccHHHHHHHHHHhCCEEEEecCCcccc---c-ccCCCCcc-
Q psy7357 114 --DG-TIDFSDLETKVKKNKETLSCLMITYPS-TFGVFEENITDVCELIHEHGGQVYLDGANMNAQ---V-GLCRPGDY- 184 (302)
Q Consensus 114 --~g-~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~---~-~~~~p~~~- 184 (302)
|. ..|++.+++.+++.+++..+.++++++ +.+...+|+++|+++|+++|+..++-+|+.+-- . .+......
T Consensus 133 ~~d~l~td~~~ie~~i~~~G~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ~~~~~~~i~~a~~~G 212 (389)
T PF05889_consen 133 EGDELITDLEAIEAKIEELGADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQSSKCMHLIQQAWRVG 212 (389)
T ss_dssp ETTEEEEHHHHHHHHHHHHCGGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGTTTTT-HHHHHHHHHHHHHS
T ss_pred CCCeeeccHHHHHHHHHHhCCCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccchhhhHHHHHHHHHHHHhcC
Confidence 22 568999999998766777777888876 778887459999999999999999999874300 0 00000011
Q ss_pred CCcEEEeCCCcccCCCCCCCCCcceeEEEeC-C----CCCCCCCCcc
Q psy7357 185 GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKS-H----LAPFLPVHPL 226 (302)
Q Consensus 185 gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~-~----l~~~lpg~~~ 226 (302)
..|+++-++.|-|-.|. |.+.++... . +.+.-|||..
T Consensus 213 Rvda~vqS~dkNF~VPv-----Ggai~As~~~~~i~~vs~~YpGRas 254 (389)
T PF05889_consen 213 RVDAFVQSTDKNFMVPV-----GGAIMASFDPSGILAVSKEYPGRAS 254 (389)
T ss_dssp TCSEEEEEHHHHHCEES-----SHEEEEESSHHHHHHHHHTSHSHBT
T ss_pred CcceeeeecCCCEEecC-----CCcEEEecCHHHHHHHHHHhhhhhh
Confidence 25777777788887763 445666553 2 3344577765
No 377
>KOG1359|consensus
Probab=98.57 E-value=1.5e-07 Score=84.13 Aligned_cols=166 Identities=17% Similarity=0.255 Sum_probs=104.4
Q ss_pred ccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEe
Q psy7357 30 RGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPV 109 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i 109 (302)
-|+..+...++.+++++.+-+.+.+.+. +=.|+.+++-++. ++.|-|+..+.-|.+...-.+.+.
T Consensus 108 cGtq~iHk~LE~kiAqfh~rED~ilyps-cfdANag~feail--------~pedAvfSDeLNhASIIdGirLck------ 172 (417)
T KOG1359|consen 108 CGTQDIHKLLESKIAQFHGREDTILYPS-CFDANAGAFEAIL--------TPEDAVFSDELNHASIIDGIRLCK------ 172 (417)
T ss_pred ecchHHHHHHHHHHHHHhCCCceEEecc-ccccchHHHHHhc--------ChhhhhhccccccchhhhhhHHHh------
Confidence 4666677888888888888777655543 4344534444544 566665555555544333222111
Q ss_pred ecCCCCCCCHHHHHHHHhcc-CCCeEEEEEecC--CCceeccccHHHHHHHHHHhCCEEEEecCCcccccccC---CCCc
Q psy7357 110 SVRKDGTIDFSDLETKVKKN-KETLSCLMITYP--STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLC---RPGD 183 (302)
Q Consensus 110 ~~~~~g~iD~~~l~~~i~~~-~~~t~~V~i~~P--n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~---~p~~ 183 (302)
..+.+|+-+++..+.+. +-+.+ ++++.. +-.|-+. |+++|.++++++|+++++|.+|..+..+.. ....
T Consensus 173 ---ry~h~dv~~l~~~l~~a~k~r~k-lv~TDg~FSMDGdia-Pl~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~ 247 (417)
T KOG1359|consen 173 ---RYRHVDVFDLEHCLISACKMRLK-LVVTDGVFSMDGDIA-PLEEISQLAKKYGALLFIDECHATGFFGETGRGTAEE 247 (417)
T ss_pred ---hhccchhHHHHHHHHHhhhheEE-EEEecceeccCCCcc-cHHHHHHHHHhcCcEEEEeecccceeecCCCCChHHH
Confidence 23567888888776532 22333 445543 3457777 699999999999999999999865544321 1112
Q ss_pred c----CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 184 Y----GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 184 ~----gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
+ .+|++..+++|.++ |-..||..++++++..+
T Consensus 248 ~~vm~~vdiinsTLgKAlG------ga~GGyttgp~~li~ll 283 (417)
T KOG1359|consen 248 FGVMGDVDIINSTLGKALG------GASGGYTTGPKPLISLL 283 (417)
T ss_pred hCCCCcceehhhhhhhhhc------CCCCCCccCChhHHHHH
Confidence 2 36788877777665 56678998888776554
No 378
>TIGR03251 LAT_fam L-lysine 6-transaminase. Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.
Probab=98.52 E-value=3.7e-06 Score=81.24 Aligned_cols=160 Identities=10% Similarity=0.093 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHh---CCCeeeEeeCchHHHHHHHHHHHHHHHHh----hcCCC--CCEEEEcC-CCCcccHHHHHhCC
Q psy7357 34 QLIGELETDLCEIT---GYDKISFQPNSGAQGEYAGLRAIQCYHQA----QDAHH--RNVCLIPV-SAHGTNPASAQMAG 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~---g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~----~g~~~--~d~Vlv~~-~~hg~~~~~~~~~g 103 (302)
+...++.+++++++ +++. .++.+|||+|+++++...+.|... +|..+ +.+|+..+ ..||.+.......|
T Consensus 85 ~~~~~l~~~l~~~~~~~~~~~-v~f~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~ 163 (431)
T TIGR03251 85 VAMARFVDTFARVLGDPALPH-LFFIEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTN 163 (431)
T ss_pred HHHHHHHHHHHHhcCCCCcCE-EEEeCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhccC
Confidence 34456666677765 2343 456789999988999988877311 22111 34555544 57887655443222
Q ss_pred CE-------E----EEe--e-----cCCCC--------CCCHHHHHHHHhccCCCeEEEEEecC-CCceecc---ccHHH
Q psy7357 104 MS-------V----EPV--S-----VRKDG--------TIDFSDLETKVKKNKETLSCLMITYP-STFGVFE---ENITD 153 (302)
Q Consensus 104 ~~-------v----~~i--~-----~~~~g--------~iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~---~di~~ 153 (302)
-. . ..+ | .+.+. .-+++++++.++++.+++++|+++-- ...|.+. ..+++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~ 243 (431)
T TIGR03251 164 TDPRKTARFPKFDWPRIDNPKLTFPLDAPNLDQVIALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRA 243 (431)
T ss_pred CccccccCCCCCCCccCCCCcccCCccccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHH
Confidence 10 0 001 1 11000 02356677788766678999998752 3456652 25899
Q ss_pred HHHHHHHhCCEEEEecCCcccccccCC-----CCccCCcEEEeCCCccc
Q psy7357 154 VCELIHEHGGQVYLDGANMNAQVGLCR-----PGDYGSDVSHLNLHKTF 197 (302)
Q Consensus 154 I~~ia~~~g~llivD~a~~~~~~~~~~-----p~~~gaDiv~~~~hK~l 197 (302)
|+++|+++|+++|+|+++. +++.... --...+|+++. .|.+
T Consensus 244 l~~lc~~~g~llI~DEV~t-G~GrtG~~~a~~~~gv~PDi~~~--gK~~ 289 (431)
T TIGR03251 244 MRALCDEHDALLIFDEVQT-GVGLTGTAWAYQQLGVQPDIVAF--GKKT 289 (431)
T ss_pred HHHHHHHcCCEEEEecchh-ccCccchHHHHHhcCCCCCEEEe--cccC
Confidence 9999999999999999874 2221100 01234799987 4754
No 379
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=98.48 E-value=1.8e-06 Score=80.01 Aligned_cols=172 Identities=19% Similarity=0.231 Sum_probs=108.3
Q ss_pred cccHHHHHHHHHHHHHHHhCCCe--------eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHH
Q psy7357 29 ARGYEQLIGELETDLCEITGYDK--------ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQ 100 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~--------~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~ 100 (302)
-.|...+.+++++. +||.+. +.++.-+|+.|. .. +. .++... .+...|.+|+|.++.|....+
T Consensus 68 i~G~~~f~~~~~~l---lFG~d~~~l~~~Rv~t~Qt~GGTGAL-~~--~A-~fl~~~--~~~~~vwis~PtW~NH~~If~ 138 (396)
T COG1448 68 IEGLPEFLEAVQKL---LFGADSPALAEDRVATVQTLGGTGAL-RV--AA-DFLARF--FPDATVWISDPTWPNHKAIFE 138 (396)
T ss_pred cCCcHHHHHHHHHH---hcCCCcHHHHhhhHhheecCCcchHH-HH--HH-HHHHHh--CCCceEEeCCCCcHhHHHHHH
Confidence 45766666655543 367441 366666666543 11 11 111111 456779999999999999999
Q ss_pred hCCCEEEEeec-CC-CCCCCHHHHHHHHhccCCCeEEEEEec--CCCceec--cccHHHHHHHHHHhCCEEEEecCCc-c
Q psy7357 101 MAGMSVEPVSV-RK-DGTIDFSDLETKVKKNKETLSCLMITY--PSTFGVF--EENITDVCELIHEHGGQVYLDGANM-N 173 (302)
Q Consensus 101 ~~g~~v~~i~~-~~-~g~iD~~~l~~~i~~~~~~t~~V~i~~--Pn~~G~~--~~di~~I~~ia~~~g~llivD~a~~-~ 173 (302)
..|++|.++|+ |. +..+|.+.+.+.|.+.+++. .|++.. -||||+= .+..++|.++.++.|.+.++|-|+- .
T Consensus 139 ~aGl~v~~Y~Yyd~~~~~~df~~mla~L~~a~~~~-vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF 217 (396)
T COG1448 139 AAGLEVETYPYYDAETKGLDFDGMLADLKTAPEGS-VVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGF 217 (396)
T ss_pred hcCCceeeeeccccccccccHHHHHHHHHhCCCCC-EEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhh
Confidence 99999999997 33 44699999999998654443 333332 2899964 2268999999999999999998752 2
Q ss_pred cccccCCC------CccCCc-EEEeCCCcccCCCCCCCCCcceeEEEe
Q psy7357 174 AQVGLCRP------GDYGSD-VSHLNLHKTFCIPHGGGGPGMGPIGVK 214 (302)
Q Consensus 174 ~~~~~~~p------~~~gaD-iv~~~~hK~l~~p~~~gGp~~G~l~~~ 214 (302)
+-+.-.+. ...+.- +|+.|..|.| |+-|-|+|.+.+-
T Consensus 218 ~~GleeDa~~lR~~a~~~~~~lva~S~SKnf----gLYgERVGa~~vv 261 (396)
T COG1448 218 ADGLEEDAYALRLFAEVGPELLVASSFSKNF----GLYGERVGALSVV 261 (396)
T ss_pred ccchHHHHHHHHHHHHhCCcEEEEehhhhhh----hhhhhccceeEEE
Confidence 22211100 011233 4444455555 4668898887764
No 380
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=98.45 E-value=5.2e-06 Score=76.35 Aligned_cols=237 Identities=18% Similarity=0.190 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHH-HHHHHHHhhcCCCCCEEEEcCCCCc-ccHHHHHhCCCEEEEeec
Q psy7357 34 QLIGELETDLCEITGYDKISFQPNSGAQGEYAGLR-AIQCYHQAQDAHHRNVCLIPVSAHG-TNPASAQMAGMSVEPVSV 111 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~-a~~~~~~~~g~~~~d~Vlv~~~~hg-~~~~~~~~~g~~v~~i~~ 111 (302)
...+.+++.+++.||.+... -+.-|-.|| ..+. .++. .....++.+.+++...|- +.....+..|..++.+++
T Consensus 79 rs~~~L~~avkdifGfq~~i-PthQGRgAE-~Il~~i~ik---~~~~~pg~~~~~~sN~~FdTTr~h~~~ng~~~~n~~~ 153 (471)
T COG3033 79 RSYYALADAVKDIFGFQYTI-PTHQGRGAE-NILIPILIK---KGEQEPGSKMVAFSNYHFDTTRGHIQINGATPRNVYV 153 (471)
T ss_pred ccHHHHHHHHHHhcCceeee-eccCCccHH-HHHHHHHhh---hccccCCccccccccceecchhHHHHhcCCccccccc
Confidence 35678899999999987642 233343444 2232 2221 111245667666666664 344566778888888876
Q ss_pred CC----------CCCCCHHHHHHHHhccCC-CeEEEE--EecCCCcee---ccccHHHHHHHHHHhCCEEEEecCCc--c
Q psy7357 112 RK----------DGTIDFSDLETKVKKNKE-TLSCLM--ITYPSTFGV---FEENITDVCELIHEHGGQVYLDGANM--N 173 (302)
Q Consensus 112 ~~----------~g~iD~~~l~~~i~~~~~-~t~~V~--i~~Pn~~G~---~~~di~~I~~ia~~~g~llivD~a~~--~ 173 (302)
++ .|.+|++.|++.|++-.. ++..|+ +++-+-.|. +. +++++.+||+++++.|++|++-. +
T Consensus 154 ~ea~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~-n~r~v~~ia~ky~ipvv~Da~RfaEN 232 (471)
T COG3033 154 DEAFDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMA-NMKAVYEIAKKYDIPVVMDAARFAEN 232 (471)
T ss_pred cccccccccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHH-hHHHHHHHHHHcCCcEEeehhhhhhh
Confidence 53 367999999999986543 344444 344123332 34 79999999999999999998743 1
Q ss_pred ccccc-CCCC--cc-----------CCcEEEeCCCcccCCCCCCCCCcceeEEEeCC----CCCCCCCCcccC-------
Q psy7357 174 AQVGL-CRPG--DY-----------GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSH----LAPFLPVHPLSS------- 228 (302)
Q Consensus 174 ~~~~~-~~p~--~~-----------gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~----l~~~lpg~~~~~------- 228 (302)
+...- ..|+ +| -+|-++.|.-|---. +-+|+++.+++ +-..+..+.+-+
T Consensus 233 aYFIk~rE~gYrd~sI~~IarEm~sYaD~~~mS~KKD~lv------nmGGfl~~~D~~~fDvy~~~~~~~V~~eG~~tYG 306 (471)
T COG3033 233 AYFIKQREPGYRDWSIEEIAREMYSYADGCTMSAKKDGLV------NMGGFLCFKDDSFFDVYEECRTLVVVQEGFPTYG 306 (471)
T ss_pred hhhhhhcCcccccccHHHHHHHHHhhhhhheeecccccee------ccccEEEecCccHHHHHHHHHhheEeeccccccC
Confidence 22111 1122 11 268888886664332 34589999976 334444333321
Q ss_pred --CCCcchhhhHHHHhhHh---hHHH-HH-HHHH-HHh-cccccccccCCCcceeEEEEEEecccccc
Q psy7357 229 --IDSSIGAVSAAHYGSAS---ILPI-SW-AYIR-RLE-SHYKTLFRSSRSGLVAHEFVIDVRDFKKS 287 (302)
Q Consensus 229 --~~~~l~~~~a~~~~~~~---~~~~-~~-~y~~-~l~-~g~~~~~~~~~~~~~~he~~~~~~~~~~~ 287 (302)
+...+.++|...+-+.. +..+ +. .|+. .|+ .|++++ .+.. -|-+-||...+..+
T Consensus 307 gl~GrdmealAvGL~e~~~~~yl~~Rv~Qv~YL~~~l~~~GVpi~-~paG----GHavfvda~~~lph 369 (471)
T COG3033 307 GLAGRDMEALAVGLREGVNFDYLAHRVAQVQYLADGLEEAGVPIV-QPAG----GHAVFVDAGKFLPH 369 (471)
T ss_pred cccchhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhcCCeeE-ecCC----CceEEeehhhhcCC
Confidence 23345566655555432 1111 11 5655 666 588864 4455 78898997765444
No 381
>PRK08297 L-lysine aminotransferase; Provisional
Probab=98.44 E-value=7.2e-06 Score=79.53 Aligned_cols=160 Identities=12% Similarity=0.118 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHhC---CCeeeEeeCchHHHHHHHHHHHHHHHHh----hcC--CCCCEEEEc-CCCCcccHHHHHhCC
Q psy7357 34 QLIGELETDLCEITG---YDKISFQPNSGAQGEYAGLRAIQCYHQA----QDA--HHRNVCLIP-VSAHGTNPASAQMAG 103 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g---~~~~~~~~~~Ga~a~~a~l~a~~~~~~~----~g~--~~~d~Vlv~-~~~hg~~~~~~~~~g 103 (302)
+...++.++++++++ ++. .++.+|||+|+++++..++.|... +|. ..+.+||.- ...||.+.......+
T Consensus 92 ~~~~~la~~l~~~~~p~~~~~-v~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~ 170 (443)
T PRK08297 92 VEMARFVDTFARVLGDPELPH-LFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTN 170 (443)
T ss_pred HHHHHHHHHHHhhcCCCCCCE-EEEeCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcC
Confidence 445567777877762 333 456889999988999888876421 231 123555544 467887655443322
Q ss_pred C--------EE---EEeecC-----CCC-C---------CCHHHHHHHHhccCCCeEEEEEecC-CCceecc---ccHHH
Q psy7357 104 M--------SV---EPVSVR-----KDG-T---------IDFSDLETKVKKNKETLSCLMITYP-STFGVFE---ENITD 153 (302)
Q Consensus 104 ~--------~v---~~i~~~-----~~g-~---------iD~~~l~~~i~~~~~~t~~V~i~~P-n~~G~~~---~di~~ 153 (302)
. .. ..+|.. ..+ . -|++++++.+.++.+++++|++.-- ..-|.+. ..+++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~ 250 (443)
T PRK08297 171 TDPRKTARFPKFDWPRIDNPKLRFPLPGEDLEEVEALEAEALAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAA 250 (443)
T ss_pred CcccccccCCCCCccccCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHHHH
Confidence 1 00 001110 000 0 1456778888766678999988742 3446652 25899
Q ss_pred HHHHHHHhCCEEEEecCCcccccccCCC-----CccCCcEEEeCCCccc
Q psy7357 154 VCELIHEHGGQVYLDGANMNAQVGLCRP-----GDYGSDVSHLNLHKTF 197 (302)
Q Consensus 154 I~~ia~~~g~llivD~a~~~~~~~~~~p-----~~~gaDiv~~~~hK~l 197 (302)
|.++|+++|+++|+|+++. +++-.... -...+|+++. .|.+
T Consensus 251 lr~lc~~~g~llI~DEV~t-GfGRtG~~~a~~~~gv~PDiv~~--gK~l 296 (443)
T PRK08297 251 MRELCDEHDALLIFDEVQT-GVGLTGTAWAYQQLGVRPDIVAF--GKKT 296 (443)
T ss_pred HHHHHHHcCCEEEEechhh-ccCccchHHHHHhcCCCCCEEEe--cccc
Confidence 9999999999999999873 22111000 0124799998 5876
No 382
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=98.42 E-value=2.2e-05 Score=81.18 Aligned_cols=180 Identities=13% Similarity=0.071 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHhC---CCeeeEeeCchHHHHHHHHHHHH-HHHHhhcCC------------CCCEEEEc-CCCCcccH
Q psy7357 34 QLIGELETDLCEITG---YDKISFQPNSGAQGEYAGLRAIQ-CYHQAQDAH------------HRNVCLIP-VSAHGTNP 96 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g---~~~~~~~~~~Ga~a~~a~l~a~~-~~~~~~g~~------------~~d~Vlv~-~~~hg~~~ 96 (302)
+...++.++|.++.+ ++. .++..+||+|+++++...+ .|+..+|.. .+.+||.- ...||.+.
T Consensus 409 epa~~LAe~L~~~~~~~~l~r-Vffs~sGSeAvE~AlKmA~r~y~~~~G~~~~~~~~~~~~~~~r~kIIa~~gsYHG~T~ 487 (817)
T PLN02974 409 EPALRAAELLLGGPGKGWASR-VFFSDNGSTAIEVALKMAFRKFIVDHGFLENSGNEKRGGDLIELKVLALDGSYHGDTL 487 (817)
T ss_pred HHHHHHHHHHHhccCCCCCCE-EEECCchHHHHHHHHHHHHHHHHHhcCCCcccccccccccCCCCEEEEECCCcCCCCH
Confidence 455677777877664 233 4567899999888888764 465544421 24455555 45788776
Q ss_pred HHHHhCCC--------E------EEEeecCC--------------C------C---C-------CC------------HH
Q psy7357 97 ASAQMAGM--------S------VEPVSVRK--------------D------G---T-------ID------------FS 120 (302)
Q Consensus 97 ~~~~~~g~--------~------v~~i~~~~--------------~------g---~-------iD------------~~ 120 (302)
......+- . ..+++... . + . .| .+
T Consensus 488 GAms~sg~~~~~~~~~~p~~~~~~~~~~~P~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~r~~~~~~~~~~~ 567 (817)
T PLN02974 488 GAMEAQAPSVFTGFLQQPWYSGRGLFLDPPTVGMRNGRWNISLPEGFSSGLEGEETTWESRDEVFDKTRDSTPLAKAYRS 567 (817)
T ss_pred HHHhhCCchhhhcccccccccCCCcccCCCccccccccccccCCccccccccccccccccccccccccccchhhhHHHHH
Confidence 54332220 0 11111100 0 0 0 00 25
Q ss_pred HHHHHHhc-----cCCCeEEEEEecC--CCceeccc---cHHHHHHHHHHhCCEEEEecCCcccccccCCC---C--ccC
Q psy7357 121 DLETKVKK-----NKETLSCLMITYP--STFGVFEE---NITDVCELIHEHGGQVYLDGANMNAQVGLCRP---G--DYG 185 (302)
Q Consensus 121 ~l~~~i~~-----~~~~t~~V~i~~P--n~~G~~~~---di~~I~~ia~~~g~llivD~a~~~~~~~~~~p---~--~~g 185 (302)
.+++.|++ ..+++++|+++-- ..-|++.+ -+++++++|+++|+++|+|++.. +++-.... . ...
T Consensus 568 ~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~T-GfGRtG~~fa~e~~gv~ 646 (817)
T PLN02974 568 YIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFT-GLWRLGVESAWELLGCK 646 (817)
T ss_pred HHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeeccc-CCCcccchhhHHhcCCC
Confidence 67777753 2357888888752 34566632 37999999999999999999852 22211110 1 123
Q ss_pred CcEEEeCCCcccCCCCCCCC-CcceeEEEeCCCCCCCC
Q psy7357 186 SDVSHLNLHKTFCIPHGGGG-PGMGPIGVKSHLAPFLP 222 (302)
Q Consensus 186 aDiv~~~~hK~l~~p~~~gG-p~~G~l~~~~~l~~~lp 222 (302)
+||++. .|.++ || -.+|.+++++++.+.+.
T Consensus 647 PDIi~~--gKgLt-----gG~~Plaa~l~~~~I~~~f~ 677 (817)
T PLN02974 647 PDIACY--AKLLT-----GGLVPLAATLATEEVFEAFR 677 (817)
T ss_pred CCEEee--ccccc-----CCCCccEEEEEcHHHHHhhc
Confidence 699999 49886 46 25788888887776553
No 383
>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases.; PDB: 3D6K_C 3EZ1_A 3PPL_B.
Probab=98.42 E-value=3.6e-06 Score=78.35 Aligned_cols=183 Identities=15% Similarity=0.148 Sum_probs=100.4
Q ss_pred ccccHHHHHHHHHHHHHHHhCCCeeeEeeCch-HHHHHHHHHHHHHHHH-hhc------CCCCCEEEEcCCCCcccHHHH
Q psy7357 28 QARGYEQLIGELETDLCEITGYDKISFQPNSG-AQGEYAGLRAIQCYHQ-AQD------AHHRNVCLIPVSAHGTNPASA 99 (302)
Q Consensus 28 ~sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~G-a~a~~a~l~a~~~~~~-~~g------~~~~d~Vlv~~~~hg~~~~~~ 99 (302)
.+.|.++=+-|+++.+++++|++..++..++. |+..+--..+ +++.. ..+ ..++-+.|+|.|.|-.|...+
T Consensus 63 NY~G~l~Gipe~r~l~a~llgv~~~~viv~gNSSL~lM~d~i~-~a~~~G~~~~~~PW~~~~~vKfLCPvPGYDRHFai~ 141 (425)
T PF12897_consen 63 NYPGGLDGIPEARELFAELLGVPPENVIVGGNSSLNLMHDTIS-RAMLHGVPGSETPWCKEEKVKFLCPVPGYDRHFAIT 141 (425)
T ss_dssp SS-S-SS--HHHHHHHHHHHTS-GGGEEE-SS-HHHHHHHHHH-HHHHH--TT-SS-GGGSS--EEEEEES--HHHHHHH
T ss_pred CCCCccCChHHHHHHHHHHhCCCHHHEEEeccchHHHHHHHHH-HHHhcCCCCCCCCchhccCceEEecCCCchHHHHHH
Confidence 34477888999999999999999887765543 3322222211 22211 111 123458899999988888899
Q ss_pred HhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecC---CCceecc--ccHHHHHHH-HHHhCCEEEEecCCcc
Q psy7357 100 QMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP---STFGVFE--ENITDVCEL-IHEHGGQVYLDGANMN 173 (302)
Q Consensus 100 ~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~P---n~~G~~~--~di~~I~~i-a~~~g~llivD~a~~~ 173 (302)
+..|++.+.||.+++| .|+|.+++++.+. +.++++. +-| |++|+.- +-+++++++ +.+.+-.++.|.|+.+
T Consensus 142 E~~Giemi~VpM~~dG-PDmD~Ve~LV~~D-~svKGiW-cVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDNAY~v 218 (425)
T PF12897_consen 142 EHFGIEMIPVPMTEDG-PDMDMVEELVAED-PSVKGIW-CVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDNAYAV 218 (425)
T ss_dssp HHCT-EEEEEEEETTE-E-HHHHHHHTHTS-TTEEEEE-E-SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-TTTT
T ss_pred HhhCcEEEecCCCCCC-CCHHHHHHHHhcC-CccceEE-eCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeecCceE
Confidence 9999999999998888 5999999999642 5666654 444 7899873 135555554 2346888889988754
Q ss_pred cccccCCCCcc------------CCc--EEEeCCCcccCCCCCCCCCcceeEEEeCCCCC
Q psy7357 174 AQVGLCRPGDY------------GSD--VSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAP 219 (302)
Q Consensus 174 ~~~~~~~p~~~------------gaD--iv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~ 219 (302)
...--..+... ..| ++..|++|=- |.|-|+++++++++-++
T Consensus 219 HhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKIT-----f~GaGva~~aaS~~Nl~ 273 (425)
T PF12897_consen 219 HHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKIT-----FPGAGVAFFAASEANLA 273 (425)
T ss_dssp -BSSSSSS------HHHHHHHTT-TTSEEEEEESTTTS------TTSS-EEEEE-HHHHH
T ss_pred eeccccccchhhhHHHHHHHHcCCCCeEEEEecccccc-----cCCcceeeeecCHHHHH
Confidence 43210111100 123 4555666621 33778999999865433
No 384
>KOG0628|consensus
Probab=98.34 E-value=7.1e-06 Score=77.57 Aligned_cols=164 Identities=14% Similarity=0.149 Sum_probs=105.9
Q ss_pred HHHHHHHHhCCCee----------eEeeCchHHHHHHHHHHHHHH-HHhhcCC----------CCCEEEEcCCCCcccHH
Q psy7357 39 LETDLCEITGYDKI----------SFQPNSGAQGEYAGLRAIQCY-HQAQDAH----------HRNVCLIPVSAHGTNPA 97 (302)
Q Consensus 39 ~~~~l~~l~g~~~~----------~~~~~~Ga~a~~a~l~a~~~~-~~~~g~~----------~~d~Vlv~~~~hg~~~~ 97 (302)
..+++.++++++.. -+..++.+.+.+.++++.|.- .+..+.+ .+=.+..++-+|.+.-.
T Consensus 118 vmDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~Y~SDqahssvek 197 (511)
T KOG0628|consen 118 VMDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKIEEIKSRPPELHESSVLARLVAYCSDQAHSSVEK 197 (511)
T ss_pred HHHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhheEEecCcccchHHH
Confidence 34688888888753 122233345555555555432 1111111 12256677888877777
Q ss_pred HHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCC--eEEEEEecCCCcee--ccccHHHHHHHHHHhCCEEEEecCCcc
Q psy7357 98 SAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKET--LSCLMITYPSTFGV--FEENITDVCELIHEHGGQVYLDGANMN 173 (302)
Q Consensus 98 ~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~--t~~V~i~~Pn~~G~--~~~di~~I~~ia~~~g~llivD~a~~~ 173 (302)
.+...+.+++.++.|.+..++.+.|+++|++...+ +-.+++.+-.+||. ++ ++.++..+|+++|+|++||+|+.-
T Consensus 198 a~~i~~VklR~l~td~n~~mr~~~L~~AIe~D~arGlIPf~v~at~GTT~~ca~D-~l~elg~Vc~~~glWLHVDAAYAG 276 (511)
T KOG0628|consen 198 ACLIAGVKLRALPTDENFGMRGDTLRKAIEEDIARGLIPFFVCATLGTTSSCAFD-ELEELGPVCREEGLWLHVDAAYAG 276 (511)
T ss_pred hHhhcceeEEEeecccCcCCCHHHHHHHHHHHHhCCCccEEEEEeecCccccccc-cHHHhcchhhhcCEEEEeehhhcc
Confidence 77788999999999988889999999999853221 22333444334443 45 799999999999999999999852
Q ss_pred ccccc--CC---CCccCCcEEEeCCCcccCCCCCC
Q psy7357 174 AQVGL--CR---PGDYGSDVSHLNLHKTFCIPHGG 203 (302)
Q Consensus 174 ~~~~~--~~---p~~~gaDiv~~~~hK~l~~p~~~ 203 (302)
+.... .+ -|-..+|-+.++.||++.....+
T Consensus 277 sa~iCpE~r~l~rGie~aDSfn~n~hK~~~vnfDC 311 (511)
T KOG0628|consen 277 SAFICPEFRYLMRGIEYADSFNFNPHKWLLVNFDC 311 (511)
T ss_pred ccccCHHHHHHhhcchhhccccCChhheeEEeeee
Confidence 22211 01 12334799999999999865443
No 385
>KOG3846|consensus
Probab=97.81 E-value=0.00053 Score=62.22 Aligned_cols=132 Identities=20% Similarity=0.244 Sum_probs=93.3
Q ss_pred CCCCEEEEcCCCCcccHH----HHHhCCCEEE----EeecCC-CCCCCHHHHHHHHhccCCCeEEEEEecCC-Cceeccc
Q psy7357 80 HHRNVCLIPVSAHGTNPA----SAQMAGMSVE----PVSVRK-DGTIDFSDLETKVKKNKETLSCLMITYPS-TFGVFEE 149 (302)
Q Consensus 80 ~~~d~Vlv~~~~hg~~~~----~~~~~g~~v~----~i~~~~-~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~~ 149 (302)
++|-+|+.-..+|++... .++..|..+. -+...+ +..+-.+++-+.|+.+.|..+.|++..-. +||..-
T Consensus 153 ekR~KILlE~kaFPSDhYAiesQ~~lhG~~~e~sm~~iePREGEetlRteDILd~IEkngDeiA~v~fSGvqyYTGQ~F- 231 (465)
T KOG3846|consen 153 EKRFKILLEKKAFPSDHYAIESQCKLHGISPENSMIQIEPREGEETLRTEDILDTIEKNGDEIALVCFSGVQYYTGQYF- 231 (465)
T ss_pred chhhhhhhccCCCCchHHHHHhhhhhcCCChHHheEEecccccccchhHHHHHHHHHhcCCeEEEEEeecceeeccccc-
Confidence 346688887778876543 3456676533 333322 23577889999998888888888887654 789888
Q ss_pred cHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcEEEeCCCcccCCCCCCCCC-cceeEEEeCCCC
Q psy7357 150 NITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGP-GMGPIGVKSHLA 218 (302)
Q Consensus 150 di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDiv~~~~hK~l~~p~~~gGp-~~G~l~~~~~l~ 218 (302)
|+.+|...-+..|+++=.|-||..+-..+ ..-+||+|+.|--+-|.+.. |+ ++|=+.+.++..
T Consensus 232 di~aIT~Agq~kgc~VGfDLAHAvgNVpL-~LHdWgVDFACWCSYKYlna-----GaGgIgGlFvHekh~ 295 (465)
T KOG3846|consen 232 DIGAITFAGQFKGCLVGFDLAHAVGNVPL-QLHDWGVDFACWCSYKYLNA-----GAGGIGGLFVHEKHT 295 (465)
T ss_pred chhhhhhcccCCCcEechhhhhhhcCCce-EEeecCCceEEEeeeccccc-----CCCccceeeeehhhh
Confidence 89999977777899999998886665554 34689999999988898863 44 455555554433
No 386
>KOG1358|consensus
Probab=97.43 E-value=0.0016 Score=60.87 Aligned_cols=149 Identities=14% Similarity=0.159 Sum_probs=92.0
Q ss_pred ccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHH---HhCCCEE
Q psy7357 30 RGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASA---QMAGMSV 106 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~---~~~g~~v 106 (302)
-|+......+++.+++++|++.+.+..++=++.+ +++-|+. .+||.|++.+.. +...- +...-++
T Consensus 135 YGt~DvHldlE~~iakF~G~E~aivYs~gF~ti~-S~ipafs--------KrGDIi~~de~~---nfaIq~GlqlSRS~i 202 (467)
T KOG1358|consen 135 YGTIDVHLDLEKRIAKFMGTEDAIVYSYGFSTIE-SAIPAFS--------KRGDIIFVDEAV---NFAIQKGLQLSRSTI 202 (467)
T ss_pred cccceeecccHHHHHHhhCCcceeeeccccchhh-hcchhhh--------ccCcEEEEehhh---hHHHHHHHhhhhhee
Confidence 4566667788889999999998877665433322 4444433 678888887655 33221 1122233
Q ss_pred EEeecCCCCCCCHHHHHHHHhccC------C---CeEEEEEecC--CCceeccccHHHHHHHHHHhCCEEEEecCCcccc
Q psy7357 107 EPVSVRKDGTIDFSDLETKVKKNK------E---TLSCLMITYP--STFGVFEENITDVCELIHEHGGQVYLDGANMNAQ 175 (302)
Q Consensus 107 ~~i~~~~~g~iD~~~l~~~i~~~~------~---~t~~V~i~~P--n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~ 175 (302)
++. ...|++++++.+-+.. + .|+-.++... -++|.+. ++++|.++..++...+++|... +.
T Consensus 203 ~~F-----khndm~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~-pl~~iv~lk~Kyk~RvildEs~--Sf 274 (467)
T KOG1358|consen 203 SYF-----KHNDMEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDIC-PLPEIVKLKNKYKFRVILDESL--SF 274 (467)
T ss_pred EEe-----cCCCHHHHHHhccCcchhhhhccccccceEEEEEEeeccCCCccc-ccHHHHHHHhhheEEEEEeccc--cc
Confidence 333 3468899988875321 1 2333344432 2578888 7999999999999999999864 33
Q ss_pred cccCCCC----------ccCCcEEEeCCCcccC
Q psy7357 176 VGLCRPG----------DYGSDVSHLNLHKTFC 198 (302)
Q Consensus 176 ~~~~~p~----------~~gaDiv~~~~hK~l~ 198 (302)
+.+.+.| .-.+|+++++..-.++
T Consensus 275 G~lg~~GrGvteH~~v~~~~iDiv~~sm~~ala 307 (467)
T KOG1358|consen 275 GVLGKTGRGVTEHFGVPITDIDIVTASMETALA 307 (467)
T ss_pred ccccccCccccccCCCCccceeeeeeccccccc
Confidence 3332211 1236899987544443
No 387
>KOG1411|consensus
Probab=97.36 E-value=0.0012 Score=60.80 Aligned_cols=129 Identities=20% Similarity=0.230 Sum_probs=91.0
Q ss_pred CCCCEEEEcCCCCcccHHHHHhCCCEEEEeecC--CCCCCCHHHHHHHHhccCCCeEEEEE--ecCCCceec---cccHH
Q psy7357 80 HHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVR--KDGTIDFSDLETKVKKNKETLSCLMI--TYPSTFGVF---EENIT 152 (302)
Q Consensus 80 ~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~--~~g~iD~~~l~~~i~~~~~~t~~V~i--~~Pn~~G~~---~~di~ 152 (302)
-++..|.+|+|.+|.|....+..|+.+..+..- .+..+|.+.+-+-+.+..+. ..|++ |.-|+||+= + ..+
T Consensus 144 ~~~~~I~ip~PTWgNh~~if~~ag~~~~~yrYyd~~t~gld~~g~ledl~~~p~g-s~ilLhaCaHNPTGvDPt~e-qw~ 221 (427)
T KOG1411|consen 144 YPSRDIYIPDPTWGNHKNIFKDAGLPVKFYRYYDPKTRGLDFKGMLEDLGEAPEG-SIILLHACAHNPTGVDPTKE-QWE 221 (427)
T ss_pred ccccceeecCCcccccCccccccCcceeeeeeccccccccchHHHHHHHhcCCCC-cEEEeehhhcCCCCCCccHH-HHH
Confidence 357789999999999999888899988777652 35678998888888754333 22333 223788863 4 588
Q ss_pred HHHHHHHHhCCEEEEecCC-cccccccCC-C------CccCCcEEEeCCCcccCCCCCCCCCcceeEEE
Q psy7357 153 DVCELIHEHGGQVYLDGAN-MNAQVGLCR-P------GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGV 213 (302)
Q Consensus 153 ~I~~ia~~~g~llivD~a~-~~~~~~~~~-p------~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~ 213 (302)
+|.++.++.+.+-++|.|+ ..+.+.+.. . .+.|-++++. |+|++-+|.-|=|+|.+.+
T Consensus 222 ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g~~~~la---QSyAKNMGLYgERvGa~sv 287 (427)
T KOG1411|consen 222 KISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVEDGHEILLA---QSYAKNMGLYGERVGALSV 287 (427)
T ss_pred HHHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHHcCCceEee---hhhhhhcchhhhccceeEE
Confidence 9999999999888899875 233333211 0 1235567764 7999999998889888743
No 388
>KOG1412|consensus
Probab=97.36 E-value=0.0038 Score=56.83 Aligned_cols=129 Identities=16% Similarity=0.203 Sum_probs=88.9
Q ss_pred CCCEEEEcCCCCcccHHHHHhCCC-EEEEeecC--CCCCCCHHHHHHHHhccCCCeEEEEE--ecCCCceec--cccHHH
Q psy7357 81 HRNVCLIPVSAHGTNPASAQMAGM-SVEPVSVR--KDGTIDFSDLETKVKKNKETLSCLMI--TYPSTFGVF--EENITD 153 (302)
Q Consensus 81 ~~d~Vlv~~~~hg~~~~~~~~~g~-~v~~i~~~--~~g~iD~~~l~~~i~~~~~~t~~V~i--~~Pn~~G~~--~~di~~ 153 (302)
.++.|.+++|.+..|....+..|+ ++..+++= +.-.+|++.+...|+..++. ..+++ |.-|+||+= ++...+
T Consensus 124 ~~~~VY~SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~~d~e~~Lsdl~~APe~-si~iLhaCAhNPTGmDPT~EQW~q 202 (410)
T KOG1412|consen 124 NKNTVYVSNPTWENHHAIFEKAGFTTVATYPYWDAENKCVDLEGFLSDLESAPEG-SIIILHACAHNPTGMDPTREQWKQ 202 (410)
T ss_pred ccceeEecCCchhHHHHHHHHcCCceeeeeeeecCCCceecHHHHHHHHhhCCCC-cEEeeeccccCCCCCCCCHHHHHH
Confidence 356799999999999999888895 56677762 23478999999999754332 22332 223788863 226889
Q ss_pred HHHHHHHhCCEEEEecCC-cccccccCCCC--------ccCCcEEEeCCCcccCCCCCCCCCcceeEEEe
Q psy7357 154 VCELIHEHGGQVYLDGAN-MNAQVGLCRPG--------DYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVK 214 (302)
Q Consensus 154 I~~ia~~~g~llivD~a~-~~~~~~~~~p~--------~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~ 214 (302)
|++..++++.+.++|.|+ ..+.+.+ ..+ +.|..+.+. |+|++-.|+-++|+|-+.+-
T Consensus 203 ia~vik~k~lf~fFDiAYQGfASGD~-~~DawAiR~fV~~g~e~fv~---QSFaKNfGlYneRvGnltvv 268 (410)
T KOG1412|consen 203 IADVIKSKNLFPFFDIAYQGFASGDL-DADAWAIRYFVEQGFELFVC---QSFAKNFGLYNERVGNLTVV 268 (410)
T ss_pred HHHHHHhcCceeeeehhhcccccCCc-cccHHHHHHHHhcCCeEEEE---hhhhhhcccccccccceEEE
Confidence 999999999998899875 2333332 111 224445554 68888888889999988653
No 389
>PLN02994 1-aminocyclopropane-1-carboxylate synthase
Probab=96.44 E-value=0.01 Score=49.19 Aligned_cols=60 Identities=17% Similarity=0.227 Sum_probs=45.0
Q ss_pred CCCCcccccHHHHHHHHHHHHHHHhC----CCeeeEeeCchHH-HHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCc
Q psy7357 23 FIPQDQARGYEQLIGELETDLCEITG----YDKISFQPNSGAQ-GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHG 93 (302)
Q Consensus 23 y~p~e~sqG~l~~~~e~~~~l~~l~g----~~~~~~~~~~Ga~-a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg 93 (302)
|++ ++|..++++.+.+.+.+.+| .+..++..++|++ +.+.++.++. ++||.|++++|.|+
T Consensus 88 Y~~---~~G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~--------dpGD~VlVp~P~Y~ 152 (153)
T PLN02994 88 FQD---YHGLANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIA--------DPGDAFLVPTPYYA 152 (153)
T ss_pred CCC---CCCcHHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHc--------CCCCEEEEeCCCCC
Confidence 555 68999999999999999988 3445777777774 4434444433 78999999999875
No 390
>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.
Probab=95.64 E-value=0.0055 Score=56.65 Aligned_cols=163 Identities=18% Similarity=0.191 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHH---hCCCe---eeEeeCchH-HHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCC-EE
Q psy7357 35 LIGELETDLCEI---TGYDK---ISFQPNSGA-QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGM-SV 106 (302)
Q Consensus 35 ~~~e~~~~l~~l---~g~~~---~~~~~~~Ga-~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~-~v 106 (302)
+..|+++.|++| .|-.. -.+..+.|+ +-..|++.|+..-. ....+.-+|+.+.|.|+.++.......- ..
T Consensus 44 ~s~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~AalyALSp~~--~~~~~p~~VVa~aPYY~~Y~~qt~~f~s~~y 121 (363)
T PF04864_consen 44 ISPELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLFNAALYALSPNA--SPSSSPASVVAAAPYYSSYPEQTDFFDSRLY 121 (363)
T ss_dssp S-HHHHHHHHHHHHHH-SB--TTSEEEEECHHHHHHHHHHHHHCHHT---TTSSSEEEEE-SS--CHHHHHCCCT-BTTE
T ss_pred ccHHHHHHHHHHHHHhccccccCcEEEEcCCHHHHHHHHHHhcCCCC--CCCCCCceeEecCCCccchHHHHHhccccCc
Confidence 334555555544 44222 256667776 43446666654320 0112345788888887777664332111 11
Q ss_pred EEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCC-CceeccccHHHHHHHHHHhCCEEEEecCCccccc-ccCCCCcc
Q psy7357 107 EPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPS-TFGVFEENITDVCELIHEHGGQVYLDGANMNAQV-GLCRPGDY 184 (302)
Q Consensus 107 ~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~-~~~~p~~~ 184 (302)
.+-. |. .... +...+.+-.=++++|| |.|.+.+ .+++..+..+|.|-|+.+..- .+..|.
T Consensus 122 ~w~G-da------~~~~---~~~~~~~~IElVTSPNNPDG~lr~------~V~~g~~~k~I~D~AYYWPhyTpI~~~a-- 183 (363)
T PF04864_consen 122 KWAG-DA------SNFK---NSDNPSPYIELVTSPNNPDGQLRE------AVLNGSSGKVIHDLAYYWPHYTPITAPA-- 183 (363)
T ss_dssp EEEE-EC------CCGT---T-S-CCGEEEEEESS-TTT------------SSTTTEEEEEEE-TT-STTTS---S-B--
T ss_pred cccc-cH------Hhhc---cCCCCCCeEEEEeCCCCCcccccc------hhcCCCCcceeeeeeeecccccccCCCC--
Confidence 1111 11 0010 1101234444789995 8888763 233556677789999876553 333443
Q ss_pred CCcEEEeCCCcccCCCCCCCCCcceeEEEeC-CCCCCC
Q psy7357 185 GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKS-HLAPFL 221 (302)
Q Consensus 185 gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~-~l~~~l 221 (302)
.-||+.++..|. .|=+|-|+|+.++++ +..++|
T Consensus 184 D~DiMLFT~SK~----TGHAGSR~GWAlVKD~~Va~kM 217 (363)
T PF04864_consen 184 DHDIMLFTLSKL----TGHAGSRFGWALVKDEEVAKKM 217 (363)
T ss_dssp --SEEEEEHHHH----CS-GGG-EEEEEES-HHHHHHH
T ss_pred CCceEEEEEecc----cCccccccceeeecCHHHHHHH
Confidence 349999966553 344688999999995 444444
No 391
>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]
Probab=95.22 E-value=0.067 Score=49.89 Aligned_cols=167 Identities=16% Similarity=0.199 Sum_probs=90.2
Q ss_pred ccHHHHHHHHHHHHHHHhCCCee--eEeeCchHHH-HHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH-HHHHhCCC-
Q psy7357 30 RGYEQLIGELETDLCEITGYDKI--SFQPNSGAQG-EYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP-ASAQMAGM- 104 (302)
Q Consensus 30 qG~l~~~~e~~~~l~~l~g~~~~--~~~~~~Ga~a-~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~-~~~~~~g~- 104 (302)
.-+.+.+.+.++.+++|++.+.. .++..+|+.+ ..++.+.+.. +++.. .+....++... ..++..+.
T Consensus 46 k~~~~v~~~a~~~lreLl~iPd~Y~VlflqGGat~qf~~~p~nLl~-------~~~~~-yv~~g~Ws~~a~~eA~~~~~~ 117 (365)
T COG1932 46 KEFKNVLEEAEKDLRELLNIPDDYKVLFLQGGATGQFAMAPMNLLG-------KRGTD-YVDTGAWSEFAIKEAKKVGKQ 117 (365)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCceEEEEcCccHHHHHHHHHhhhc-------ccCce-eEeeeehhHhHHHHHHHhccc
Confidence 34667889999999999999753 4444555533 3344444441 22221 22212222221 12333332
Q ss_pred -EEEEeecCCC--C-CCCHHHHHHHHhccCCCeEEEEEec-CCCceeccccHHHHHHHHHHhCCEEEEecCCcccccccC
Q psy7357 105 -SVEPVSVRKD--G-TIDFSDLETKVKKNKETLSCLMITY-PSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLC 179 (302)
Q Consensus 105 -~v~~i~~~~~--g-~iD~~~l~~~i~~~~~~t~~V~i~~-Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~ 179 (302)
.+........ | ..|++..+ ++ ++.+-|.+|. .+.+|+--++...+.. + .++++|.... .. .
T Consensus 118 ~~~~~~~~~~~~~~~iP~~~~~~--~~---~~~ayv~~~~NeTi~Gv~v~~~p~~~~---~--~~~v~D~SS~--il--s 183 (365)
T COG1932 118 PKLIDARIEEAGYGSIPDLSKWD--FS---DNDAYVHFCWNETISGVEVPELPDIGS---D--GLLVADASSA--IL--S 183 (365)
T ss_pred ccccccceeccCccCCCChhhcc--cC---CCccEEEEecCCcccceEccCCCCCCC---C--ceEEEecccH--Hh--c
Confidence 2222221111 2 33555443 33 4434355554 3367876434444432 1 6778997532 21 1
Q ss_pred CC-CccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCC
Q psy7357 180 RP-GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVH 224 (302)
Q Consensus 180 ~p-~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~ 224 (302)
+| +--..|++.++.+|-|+ +-|++++++++++++++...
T Consensus 184 r~iDvsk~dviyagaQKnlG------paGltvvIvr~~~l~r~~~~ 223 (365)
T COG1932 184 RPIDVSKYDVIYAGAQKNLG------PAGLTVVIVRPDLLERAESY 223 (365)
T ss_pred CCCChhHcceEEEehhhccC------ccceEEEEEcHHHHhccccc
Confidence 22 22346999999999875 34799999999988887664
No 392
>KOG1403|consensus
Probab=94.74 E-value=0.031 Score=50.82 Aligned_cols=66 Identities=12% Similarity=0.219 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhCCEEEEecCCcccccccCC------CCccCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCC
Q psy7357 151 ITDVCELIHEHGGQVYLDGANMNAQVGLCR------PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVH 224 (302)
Q Consensus 151 i~~I~~ia~~~g~llivD~a~~~~~~~~~~------p~~~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~ 224 (302)
++++++.+|.+|..+|.|.++. +++...+ .-.+-.||++. .|.++ -| -.++.+++.+++++.+.+.
T Consensus 232 Fq~Va~~Vr~aGGv~IaDEVQv-GFGRvG~hyWafq~y~fiPDIVtm--gKpmG----NG-hPVa~VattkeIA~Af~at 303 (452)
T KOG1403|consen 232 FQAVADAVRSAGGVCIADEVQV-GFGRVGSHYWAFQTYNFIPDIVTM--GKPMG----NG-HPVAAVATTKEIAQAFHAT 303 (452)
T ss_pred HHHHHHHHhcCCCeEEeehhhh-cccccchhhhhhhhhccccchhee--cccCC----CC-CeeeEEeccHHHHHHhccc
Confidence 6788999999999999999872 3322111 11234688887 35444 33 4578888888888777653
No 393
>KOG3843|consensus
Probab=94.33 E-value=0.5 Score=42.47 Aligned_cols=182 Identities=15% Similarity=0.143 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHhCCC---eeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeec
Q psy7357 35 LIGELETDLCEITGYD---KISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSV 111 (302)
Q Consensus 35 ~~~e~~~~l~~l~g~~---~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~ 111 (302)
+-.++...+-.|.|+- .+.+.|-.+....-.++.++|. + +.+-+-|+-++....+-..+.-..|++++.+..
T Consensus 58 isne~a~~~i~l~glhav~nc~vvpl~tgmslslc~~s~r~----k-rpkakyiiw~ridqks~~ksi~~agfepiiie~ 132 (432)
T KOG3843|consen 58 ISNEFAKDAIHLAGLHAVANCFVVPLATGMSLSLCFLSLRH----K-RPKAKYIIWLRIDQKSCFKSIIHAGFEPIIIEN 132 (432)
T ss_pred HHHHHHHHHHHHhhhhhhhceeEEeccccccHHHHHHHHhh----c-CCcccEEEEEecchHHHHHHHHhcCCCceeeec
Confidence 3456666666677753 3444554443222233334442 1 123345666665544444455577998887764
Q ss_pred CCCC---CCCHHHHHHHHhccCCCeEEEEEecCC-CceeccccHHHHHHHHHHhCCEEEEecCCcccc---c-ccCCCCc
Q psy7357 112 RKDG---TIDFSDLETKVKKNKETLSCLMITYPS-TFGVFEENITDVCELIHEHGGQVYLDGANMNAQ---V-GLCRPGD 183 (302)
Q Consensus 112 ~~~g---~iD~~~l~~~i~~~~~~t~~V~i~~Pn-~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~---~-~~~~p~~ 183 (302)
--+| ..|++.+++.+++..++.-+.+.+..+ +--...+++++|+.||..|+++-+|..|+..-. . .+....+
T Consensus 133 i~d~d~l~tdleav~~~iee~g~dcilci~sttscfapr~pd~leaiaaica~~diphivnnayglqsee~i~~iaa~~~ 212 (432)
T KOG3843|consen 133 ILDGDELITDLEAVEAIIEELGEDCILCIHSTTSCFAPRSPDNLEAIAAICAAHDIPHIVNNAYGLQSEECIHKIAAAAE 212 (432)
T ss_pred cccchHHHHhHHHHHHHHHHhCCceEEEEeecccccCCCCCchHHHHHHHHHccCchhhhccccccchHHHHHHHHHHhh
Confidence 2333 579999999998766664333332222 222334479999999999999988886642100 0 0000111
Q ss_pred -cCCcEEEeCCCcccCCCCCCCCCcceeEEE-eC----CCCCCCCCCcc
Q psy7357 184 -YGSDVSHLNLHKTFCIPHGGGGPGMGPIGV-KS----HLAPFLPVHPL 226 (302)
Q Consensus 184 -~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~-~~----~l~~~lpg~~~ 226 (302)
-.+|.++.++.|-|..|.| | .+++. ++ ++.+..|||-.
T Consensus 213 ~grida~vqsldknf~vpvg--g---aiia~fk~n~iq~iak~ypgras 256 (432)
T KOG3843|consen 213 CGRIDAFVQSLDKNFMVPVG--G---AIIAAFKDNFIQEIAKMYPGRAS 256 (432)
T ss_pred hccHHHHHHHhhhcceeecc--h---hHhhHhHHHHHHHHHHhCCCccc
Confidence 1368899999999998753 2 22222 33 34455588764
No 394
>KOG1405|consensus
Probab=91.87 E-value=0.46 Score=44.41 Aligned_cols=97 Identities=16% Similarity=0.239 Sum_probs=60.3
Q ss_pred CHHHHHHHHhccC---CCeEEEEEecC-CCce----eccccHHHHHHHHHHhCCEEEEecCCcccc--ccc-C--C-CCc
Q psy7357 118 DFSDLETKVKKNK---ETLSCLMITYP-STFG----VFEENITDVCELIHEHGGQVYLDGANMNAQ--VGL-C--R-PGD 183 (302)
Q Consensus 118 D~~~l~~~i~~~~---~~t~~V~i~~P-n~~G----~~~~di~~I~~ia~~~g~llivD~a~~~~~--~~~-~--~-p~~ 183 (302)
-++++|++|.+++ ..++++++.-- +.-| .-. -++.+.+|+++||+.++||++|.-+. +-+ . . --+
T Consensus 254 Cl~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~-Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~ 332 (484)
T KOG1405|consen 254 CLAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPD-FFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLD 332 (484)
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHH-HHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCC
Confidence 3778888887653 24566666521 2322 223 47899999999999999999984111 111 0 0 012
Q ss_pred cCCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCCCCCcc
Q psy7357 184 YGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPL 226 (302)
Q Consensus 184 ~gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~lpg~~~ 226 (302)
..+|+|++| |-|-. | | ..-++++.+.-|-|++
T Consensus 333 ~PpD~vTFS--KK~q~----g----G-ffh~~~frpn~pYrif 364 (484)
T KOG1405|consen 333 SPPDVVTFS--KKFQT----G----G-FFHDEEFRPNEPYRIF 364 (484)
T ss_pred CCccceehh--hhhhc----C----c-cccCcccCCCchHHHh
Confidence 247999996 54431 2 4 4456788888788887
No 395
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=76.52 E-value=48 Score=28.37 Aligned_cols=147 Identities=16% Similarity=0.143 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHhCCCeeeE-eeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH-------HHHHhCCCE
Q psy7357 34 QLIGELETDLCEITGYDKISF-QPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP-------ASAQMAGMS 105 (302)
Q Consensus 34 ~~~~e~~~~l~~l~g~~~~~~-~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~-------~~~~~~g~~ 105 (302)
+.+......+.+++..+...+ +..-.+......+..+...........+.+|++....--.|. ...+..|++
T Consensus 33 ~~l~p~m~~vG~~w~~~~i~va~e~~as~~~~~~l~~l~~~~~~~~~~~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~ 112 (201)
T cd02070 33 EGLAPGMDIVGDKYEEGEIFVPELLMAADAMKAGLDLLKPLLGKSKSAKKGKVVIGTVEGDIHDIGKNLVATMLEANGFE 112 (201)
T ss_pred HHHHHHHHHHHHHHccCCeeHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCccchHHHHHHHHHHHHCCCE
Confidence 444555566777777654322 111122222222333332222221112445555433221221 145688999
Q ss_pred EEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhC----CEEEEecCCcccccccCCC
Q psy7357 106 VEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHG----GQVYLDGANMNAQVGLCRP 181 (302)
Q Consensus 106 v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g----~llivD~a~~~~~~~~~~p 181 (302)
++.+..+ +.++++.+.+.+++++. |.++.-++ ..+. +++++.+..++.+ +.+++=+..+ ..- -.
T Consensus 113 vi~lG~~----~p~~~l~~~~~~~~~d~--v~lS~~~~-~~~~-~~~~~i~~lr~~~~~~~~~i~vGG~~~-~~~---~~ 180 (201)
T cd02070 113 VIDLGRD----VPPEEFVEAVKEHKPDI--LGLSALMT-TTMG-GMKEVIEALKEAGLRDKVKVMVGGAPV-NQE---FA 180 (201)
T ss_pred EEECCCC----CCHHHHHHHHHHcCCCE--EEEecccc-ccHH-HHHHHHHHHHHCCCCcCCeEEEECCcC-CHH---HH
Confidence 9887753 67899999998755554 44443222 2344 6888888888764 4565555321 111 11
Q ss_pred CccCCcEEEeC
Q psy7357 182 GDYGSDVSHLN 192 (302)
Q Consensus 182 ~~~gaDiv~~~ 192 (302)
...|+|...-+
T Consensus 181 ~~~GaD~~~~d 191 (201)
T cd02070 181 DEIGADGYAED 191 (201)
T ss_pred HHcCCcEEECC
Confidence 34578877655
No 396
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=75.70 E-value=21 Score=27.52 Aligned_cols=85 Identities=16% Similarity=0.143 Sum_probs=50.1
Q ss_pred HHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHh---CCEEEEecCCccc
Q psy7357 98 SAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEH---GGQVYLDGANMNA 174 (302)
Q Consensus 98 ~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~---g~llivD~a~~~~ 174 (302)
..+..|++++.+.. .+.++++.+.+.+.+++ .|.++..+. ..++ +++++.+.+++. ++.+++=+..+..
T Consensus 22 ~l~~~G~~V~~lg~----~~~~~~l~~~~~~~~pd--vV~iS~~~~-~~~~-~~~~~i~~l~~~~~~~~~i~vGG~~~~~ 93 (119)
T cd02067 22 ALRDAGFEVIDLGV----DVPPEEIVEAAKEEDAD--AIGLSGLLT-THMT-LMKEVIEELKEAGLDDIPVLVGGAIVTR 93 (119)
T ss_pred HHHHCCCEEEECCC----CCCHHHHHHHHHHcCCC--EEEEecccc-ccHH-HHHHHHHHHHHcCCCCCeEEEECCCCCh
Confidence 45678999977663 36788888888765454 455544222 2334 688888888886 3555555543221
Q ss_pred ccccCCCCccCCcEEEeC
Q psy7357 175 QVGLCRPGDYGSDVSHLN 192 (302)
Q Consensus 175 ~~~~~~p~~~gaDiv~~~ 192 (302)
.. ....+.|+|.++.+
T Consensus 94 ~~--~~~~~~G~D~~~~~ 109 (119)
T cd02067 94 DF--KFLKEIGVDAYFGP 109 (119)
T ss_pred hH--HHHHHcCCeEEECC
Confidence 11 01234577877654
No 397
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=70.17 E-value=37 Score=29.28 Aligned_cols=60 Identities=15% Similarity=0.214 Sum_probs=38.2
Q ss_pred HHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCC-ceeccccHHHHHHHHHHhCCEEEE
Q psy7357 98 SAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPST-FGVFEENITDVCELIHEHGGQVYL 167 (302)
Q Consensus 98 ~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~-~G~~~~di~~I~~ia~~~g~lliv 167 (302)
..+..|.+++..+++ |.+.|.++++ ...+|++..|.. ....+ --..+.+.|++.|+..++
T Consensus 39 ~l~~~g~~vv~~d~~-----~~~~l~~al~----g~d~v~~~~~~~~~~~~~-~~~~li~Aa~~agVk~~v 99 (233)
T PF05368_consen 39 QLQALGAEVVEADYD-----DPESLVAALK----GVDAVFSVTPPSHPSELE-QQKNLIDAAKAAGVKHFV 99 (233)
T ss_dssp HHHHTTTEEEES-TT------HHHHHHHHT----TCSEEEEESSCSCCCHHH-HHHHHHHHHHHHT-SEEE
T ss_pred hhhcccceEeecccC-----CHHHHHHHHc----CCceEEeecCcchhhhhh-hhhhHHHhhhccccceEE
Confidence 345679988866653 8999999997 333455555432 22333 467889999999986654
No 398
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=67.49 E-value=26 Score=34.60 Aligned_cols=68 Identities=16% Similarity=0.178 Sum_probs=45.0
Q ss_pred HHhCC-CEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHh--CCEEEEecCCc
Q psy7357 99 AQMAG-MSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEH--GGQVYLDGANM 172 (302)
Q Consensus 99 ~~~~g-~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~--g~llivD~a~~ 172 (302)
++..| .+|..++.. ...++.+++.+.+.+.+++. |.++. .+..+. ...++++.+++. ++.+++=+.++
T Consensus 32 L~~~G~~~V~iiD~~-~~~~~~~~~~~~l~~~~pdv--Vgis~--~t~~~~-~a~~~~~~~k~~~P~~~iV~GG~h~ 102 (497)
T TIGR02026 32 LLDAGYHDVTFLDAM-TGPLTDEKLVERLRAHCPDL--VLITA--ITPAIY-IACETLKFARERLPNAIIVLGGIHP 102 (497)
T ss_pred HHhcCCcceEEeccc-ccCCCHHHHHHHHHhcCcCE--EEEec--CcccHH-HHHHHHHHHHHHCCCCEEEEcCCCc
Confidence 34567 577777653 34567888988887655554 44443 223344 477888888887 88888777664
No 399
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=67.04 E-value=45 Score=25.44 Aligned_cols=67 Identities=12% Similarity=0.193 Sum_probs=44.6
Q ss_pred HHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHh--CCEEEEecCCc
Q psy7357 98 SAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEH--GGQVYLDGANM 172 (302)
Q Consensus 98 ~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~--g~llivD~a~~ 172 (302)
+++..|+++..++.+ .+.+++.+.+.+.+++. |.++.+ .+.... ...++++.+++. ++.+++=+.++
T Consensus 23 ~l~~~G~~v~~~d~~----~~~~~l~~~~~~~~pd~--V~iS~~-~~~~~~-~~~~l~~~~k~~~p~~~iv~GG~~~ 91 (121)
T PF02310_consen 23 YLRKAGHEVDILDAN----VPPEELVEALRAERPDV--VGISVS-MTPNLP-EAKRLARAIKERNPNIPIVVGGPHA 91 (121)
T ss_dssp HHHHTTBEEEEEESS----B-HHHHHHHHHHTTCSE--EEEEES-SSTHHH-HHHHHHHHHHTTCTTSEEEEEESSS
T ss_pred HHHHCCCeEEEECCC----CCHHHHHHHHhcCCCcE--EEEEcc-CcCcHH-HHHHHHHHHHhcCCCCEEEEECCch
Confidence 456779999988754 45688988887655555 555442 223444 577888888776 77888777653
No 400
>PRK09375 quinolinate synthetase; Provisional
Probab=65.83 E-value=8.7 Score=35.69 Aligned_cols=25 Identities=12% Similarity=0.189 Sum_probs=17.9
Q ss_pred CCCHHHHHHHHhccCCCeEEEEEecCCC
Q psy7357 116 TIDFSDLETKVKKNKETLSCLMITYPST 143 (302)
Q Consensus 116 ~iD~~~l~~~i~~~~~~t~~V~i~~Pn~ 143 (302)
.++.+++++..+++ + .++++++-|+
T Consensus 106 ~~~~~~i~~lk~~~-p--~a~vVaYvNs 130 (319)
T PRK09375 106 MCPAEEFRAFKEAH-P--DATVVTYVNT 130 (319)
T ss_pred cCCHHHHHHHHHHC-C--CCEEEEEeCC
Confidence 47899999988754 2 4577777554
No 401
>KOG0630|consensus
Probab=65.67 E-value=22 Score=35.01 Aligned_cols=116 Identities=19% Similarity=0.208 Sum_probs=70.4
Q ss_pred CEEEEcCCCCcccHHH-HHhCCCEEEEeec--CC-----CCCCCHHHHHHHHhcc--CCCeEEEEEec--CCCceecccc
Q psy7357 83 NVCLIPVSAHGTNPAS-AQMAGMSVEPVSV--RK-----DGTIDFSDLETKVKKN--KETLSCLMITY--PSTFGVFEEN 150 (302)
Q Consensus 83 d~Vlv~~~~hg~~~~~-~~~~g~~v~~i~~--~~-----~g~iD~~~l~~~i~~~--~~~t~~V~i~~--Pn~~G~~~~d 150 (302)
..+.+++..|.....| ++..|+..+.|.. +. +|++|.-.+++.|++. ..++-++++.. .+..|... .
T Consensus 232 Pt~YiS~alh~~l~hYaarefGIa~~aI~~~~dhdqgeiegriDhh~feKiideDlaagkkPLilia~iGasi~GqnD-m 310 (838)
T KOG0630|consen 232 PTFYISEALHMDLLHYAAREFGIADEAIKPILDHDQGEIEGRIDHHLFEKIIDEDLAAGKKPLILIADIGASICGQND-M 310 (838)
T ss_pred ceEEEcccccHHHHHHHHHHhCCchhheecccccccccccccccHHHHHHHHHHHHhCCCCCeEEEEeccchhhcchH-H
Confidence 3667887776655444 4566765444322 21 3689999999999752 12334455544 24678877 6
Q ss_pred HHHHHHHHHHhC-CEEEEecCCcccccccCCCCc------cCCcEEEeCCCcccCCC
Q psy7357 151 ITDVCELIHEHG-GQVYLDGANMNAQVGLCRPGD------YGSDVSHLNLHKTFCIP 200 (302)
Q Consensus 151 i~~I~~ia~~~g-~llivD~a~~~~~~~~~~p~~------~gaDiv~~~~hK~l~~p 200 (302)
+-+|.++|++++ .|++.-+- .++......|.. .-.|-+..+..-||+.|
T Consensus 311 i~kildi~eahakfWLHasGh-aiAALt~aepnnil~HV~eqldSMal~ialWLGiP 366 (838)
T KOG0630|consen 311 ILKILDICEAHAKFWLHASGH-AIAALTCAEPNNILGHVEEQLDSMALNIALWLGIP 366 (838)
T ss_pred HHHHHHHHHHhhheeEeeccc-hhhheeecCcccchhHHHHHHhhccchhHHHhCCC
Confidence 999999999987 78876653 222222223321 12466666666677765
No 402
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=65.32 E-value=62 Score=25.86 Aligned_cols=57 Identities=7% Similarity=0.081 Sum_probs=38.1
Q ss_pred HHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhC
Q psy7357 98 SAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHG 162 (302)
Q Consensus 98 ~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g 162 (302)
..+..|++|+..+.+ ..++++-+++.+ .+...|.+++ ..+...+ .++++.+..++.|
T Consensus 25 ~l~~~GfeVi~lg~~----~s~e~~v~aa~e--~~adii~iSs-l~~~~~~-~~~~~~~~L~~~g 81 (132)
T TIGR00640 25 AYADLGFDVDVGPLF----QTPEEIARQAVE--ADVHVVGVSS-LAGGHLT-LVPALRKELDKLG 81 (132)
T ss_pred HHHhCCcEEEECCCC----CCHHHHHHHHHH--cCCCEEEEcC-chhhhHH-HHHHHHHHHHhcC
Confidence 345789999877753 567777666554 4555677765 3334555 5889998888875
No 403
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=64.03 E-value=19 Score=34.58 Aligned_cols=63 Identities=21% Similarity=0.286 Sum_probs=43.1
Q ss_pred EEEEeecCCCCC-CCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEec
Q psy7357 105 SVEPVSVRKDGT-IDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDG 169 (302)
Q Consensus 105 ~v~~i~~~~~g~-iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~ 169 (302)
++..++..+... .+.+.|.+.+++.-++..+|+++. -.-|++. +++++.++|+++|.++++|-
T Consensus 115 QllRvD~Ee~~~~~~~~~ll~~~~~~l~~~~~vVLSD-Y~KG~L~-~~q~~I~~ar~~~~pVLvDP 178 (467)
T COG2870 115 QLLRLDFEEKFPIEDENKLLEKIKNALKSFDALVLSD-YAKGVLT-NVQKMIDLAREAGIPVLVDP 178 (467)
T ss_pred eEEEecccccCcchhHHHHHHHHHHHhhcCCEEEEec-cccccch-hHHHHHHHHHHcCCcEEECC
Confidence 455555533222 455566666653334667788876 3358898 69999999999999999994
No 404
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=62.35 E-value=99 Score=26.38 Aligned_cols=84 Identities=23% Similarity=0.257 Sum_probs=52.2
Q ss_pred HHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhC----CEEEEecCCcc
Q psy7357 98 SAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHG----GQVYLDGANMN 173 (302)
Q Consensus 98 ~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g----~llivD~a~~~ 173 (302)
..+..|++++.+..+ +.++++.+.+.+.+++. |.++...+ -... .++++.+.+++.+ ..+++=+...
T Consensus 107 ~l~~~G~~vi~LG~~----vp~e~~v~~~~~~~pd~--v~lS~~~~-~~~~-~~~~~i~~l~~~~~~~~v~i~vGG~~~- 177 (197)
T TIGR02370 107 MLRANGFDVIDLGRD----VPIDTVVEKVKKEKPLM--LTGSALMT-TTMY-GQKDINDKLKEEGYRDSVKFMVGGAPV- 177 (197)
T ss_pred HHHhCCcEEEECCCC----CCHHHHHHHHHHcCCCE--EEEccccc-cCHH-HHHHHHHHHHHcCCCCCCEEEEEChhc-
Confidence 456889999998864 67899999998765655 44433222 1334 5788888888874 4565555321
Q ss_pred cccccCCCCccCCcEEEeCC
Q psy7357 174 AQVGLCRPGDYGSDVSHLNL 193 (302)
Q Consensus 174 ~~~~~~~p~~~gaDiv~~~~ 193 (302)
... + ....|+|...-+.
T Consensus 178 ~~~-~--~~~~gad~~~~da 194 (197)
T TIGR02370 178 TQD-W--ADKIGADVYGENA 194 (197)
T ss_pred CHH-H--HHHhCCcEEeCCh
Confidence 110 1 1345788776653
No 405
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=62.09 E-value=65 Score=28.04 Aligned_cols=129 Identities=15% Similarity=0.196 Sum_probs=60.8
Q ss_pred cHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCccc--HHHHHhCCCEEEE
Q psy7357 31 GYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTN--PASAQMAGMSVEP 108 (302)
Q Consensus 31 G~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~--~~~~~~~g~~v~~ 108 (302)
...+....++..+.++-++...|=-++|..++....+..+...++ +++...+.+...+.. ...++..|.....
T Consensus 72 ~~~~i~~~l~~al~~vp~a~GvnNhmGS~~T~~~~~m~~vl~~l~-----~~gl~FvDS~T~~~s~a~~~A~~~gvp~~~ 146 (213)
T PF04748_consen 72 SEEEIRKRLEAALARVPGAVGVNNHMGSRFTSDREAMRWVLEVLK-----ERGLFFVDSRTTPRSVAPQVAKELGVPAAR 146 (213)
T ss_dssp -HHHHHHHHHHHHCCSTT-SEEEEEE-CCHHC-HHHHHHHHHHHH-----HTT-EEEE-S--TT-SHHHHHHHCT--EEE
T ss_pred CHHHHHHHHHHHHHHCCCcEEEecCCCccccCCHHHHHHHHHHHH-----HcCCEEEeCCCCcccHHHHHHHHcCCCEEe
Confidence 344455555555555555544444555555443233333333332 334556633333322 3467788876655
Q ss_pred eecCCCCCCCHHHHHHHHhcc----CCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEE
Q psy7357 109 VSVRKDGTIDFSDLETKVKKN----KETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVY 166 (302)
Q Consensus 109 i~~~~~g~iD~~~l~~~i~~~----~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~lli 166 (302)
..+-=|...|.+.+++.+++- +.+=.+|.+.+|.+. +++ -+++...-.++.|+-++
T Consensus 147 rdvfLD~~~~~~~I~~ql~~~~~~A~~~G~aI~Igh~~p~-Tl~-~L~~~~~~l~~~gi~lV 206 (213)
T PF04748_consen 147 RDVFLDNDQDEAAIRRQLDQAARIARKQGSAIAIGHPRPE-TLE-ALEEWLPELEAQGIELV 206 (213)
T ss_dssp -SEETTST-SHHHHHHHHHHHHHHHHCCSEEEEEEE-SCC-HHH-HHHHHHHHHHHCTEEE-
T ss_pred eceecCCCCCHHHHHHHHHHHHHhhhhcCcEEEEEcCCHH-HHH-HHHHHHhHHhhCCEEEE
Confidence 444224557888888777531 234467888888753 444 25555554556676664
No 406
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=61.57 E-value=54 Score=26.78 Aligned_cols=76 Identities=14% Similarity=0.161 Sum_probs=46.1
Q ss_pred CCCEEEEcCCCCcccH-------HHHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHH
Q psy7357 81 HRNVCLIPVSAHGTNP-------ASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITD 153 (302)
Q Consensus 81 ~~d~Vlv~~~~hg~~~-------~~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~ 153 (302)
++.+|++..+-.-.|. ...+..|++|+..+... .--+.++++++ .+...|.+++ -.-+..+ .+++
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~---tp~e~v~aA~~---~dv~vIgvSs-l~g~h~~-l~~~ 82 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQ---TPEEAVRAAVE---EDVDVIGVSS-LDGGHLT-LVPG 82 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcC---CHHHHHHHHHh---cCCCEEEEEe-ccchHHH-HHHH
Confidence 4556666655332331 13457899999887632 12344555556 4555566665 2223445 7999
Q ss_pred HHHHHHHhCCE
Q psy7357 154 VCELIHEHGGQ 164 (302)
Q Consensus 154 I~~ia~~~g~l 164 (302)
+.+.++++|.-
T Consensus 83 lve~lre~G~~ 93 (143)
T COG2185 83 LVEALREAGVE 93 (143)
T ss_pred HHHHHHHhCCc
Confidence 99999998864
No 407
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=60.99 E-value=23 Score=33.37 Aligned_cols=93 Identities=15% Similarity=0.043 Sum_probs=52.0
Q ss_pred ccccCCcCCccCCCCCCCcccccHHHHHHHHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEc
Q psy7357 9 MIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP 88 (302)
Q Consensus 9 ~~~~~~~~ft~~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~ 88 (302)
.+++.+.+++-.|||.+..+-+|---+-.|+-+.+.++ .|...+..+.|++. +.+...... . .+..+|+.-
T Consensus 138 ~~~a~~~G~~~i~pfD~p~viAGQGTi~lEileq~~~~--~d~v~vpvGGGGLi--sGia~~~k~---~--~p~~~vIGV 208 (347)
T COG1171 138 EELAEEEGLTFVPPFDDPDVIAGQGTIALEILEQLPDL--PDAVFVPVGGGGLI--SGIATALKA---L--SPEIKVIGV 208 (347)
T ss_pred HHHHHHcCCEEeCCCCCcceeecccHHHHHHHHhcccc--CCEEEEecCccHHH--HHHHHHHHH---h--CCCCeEEEE
Confidence 45666778888999977677766544556666666554 46666666666542 222222211 1 466788888
Q ss_pred CCCCcccHHHHHhCCCEEEEee
Q psy7357 89 VSAHGTNPASAQMAGMSVEPVS 110 (302)
Q Consensus 89 ~~~hg~~~~~~~~~g~~v~~i~ 110 (302)
++....-....-..|-.++..+
T Consensus 209 Ep~~a~~~~~Sl~~G~~~~~~~ 230 (347)
T COG1171 209 EPEGAPSMYASLKAGKIVVVLP 230 (347)
T ss_pred eeCCChHHHHHHHcCCceeecC
Confidence 8865422222223353444443
No 408
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=60.53 E-value=87 Score=25.14 Aligned_cols=64 Identities=13% Similarity=0.097 Sum_probs=42.4
Q ss_pred HHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHh---CCEEEEec
Q psy7357 98 SAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEH---GGQVYLDG 169 (302)
Q Consensus 98 ~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~---g~llivD~ 169 (302)
..+..|++++++..+ +.++++.+++.++++ .+|.++.-+. .... .++++.+.+++. +..+++=+
T Consensus 26 ~lr~~G~eVi~LG~~----vp~e~i~~~a~~~~~--d~V~lS~~~~-~~~~-~~~~~~~~L~~~~~~~~~i~vGG 92 (137)
T PRK02261 26 ALTEAGFEVINLGVM----TSQEEFIDAAIETDA--DAILVSSLYG-HGEI-DCRGLREKCIEAGLGDILLYVGG 92 (137)
T ss_pred HHHHCCCEEEECCCC----CCHHHHHHHHHHcCC--CEEEEcCccc-cCHH-HHHHHHHHHHhcCCCCCeEEEEC
Confidence 456889999998864 678888888876444 4466654333 2333 577888888876 45555444
No 409
>smart00642 Aamy Alpha-amylase domain.
Probab=60.36 E-value=7.9 Score=32.29 Aligned_cols=27 Identities=30% Similarity=0.562 Sum_probs=24.0
Q ss_pred CceeccccHHHHHHHHHHhCCEEEEecC
Q psy7357 143 TFGVFEENITDVCELIHEHGGQVYLDGA 170 (302)
Q Consensus 143 ~~G~~~~di~~I~~ia~~~g~llivD~a 170 (302)
.+|..+ +++++.+.||++|+.+++|.+
T Consensus 65 ~~Gt~~-d~~~lv~~~h~~Gi~vilD~V 91 (166)
T smart00642 65 RFGTME-DFKELVDAAHARGIKVILDVV 91 (166)
T ss_pred ccCCHH-HHHHHHHHHHHCCCEEEEEEC
Confidence 458888 899999999999999999965
No 410
>KOG2790|consensus
Probab=59.60 E-value=1.1e+02 Score=28.13 Aligned_cols=169 Identities=16% Similarity=0.116 Sum_probs=86.5
Q ss_pred cccHHHHHHHHHHHHHHHhCCCee--eEee-CchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH-HHHHhCCC
Q psy7357 29 ARGYEQLIGELETDLCEITGYDKI--SFQP-NSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP-ASAQMAGM 104 (302)
Q Consensus 29 sqG~l~~~~e~~~~l~~l~g~~~~--~~~~-~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~-~~~~~~g~ 104 (302)
|.-+..++.+.++.+++|+..+.. .+++ ++|+..--|+.+.+.+. +.| +.-|-|+.- .++.-. .-++..|.
T Consensus 47 sk~f~kii~~tes~lreLlniPdn~~vlf~QGGGt~qFaAv~lNL~gl--K~g-~~AdYiVTG--sWS~KA~~EAkk~~~ 121 (370)
T KOG2790|consen 47 SKDFAKIINDTESLLRELLNIPDNYKVLFLQGGGTGQFAAVPLNLIGL--KHG-RCADYVVTG--SWSAKAAEEAKKYGT 121 (370)
T ss_pred chhHHHHHHHHHHHHHHHHcCCCceeEEEEeCCCcccccccchhhhcc--ccC-CccceEEec--cccHHHHHHHHhhCC
Confidence 344667899999999999999752 3333 34432121222222210 111 123443332 122111 12345554
Q ss_pred E-EEEeecCC--CCC-CCHHHHHHHHhccCCCeEEEEEec-CCCceeccccHHHHHHHHHHhCCEEEEecCCcccccccC
Q psy7357 105 S-VEPVSVRK--DGT-IDFSDLETKVKKNKETLSCLMITY-PSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLC 179 (302)
Q Consensus 105 ~-v~~i~~~~--~g~-iD~~~l~~~i~~~~~~t~~V~i~~-Pn~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~ 179 (302)
. .+..+..+ -|. .|.+.++.- ++.+-|..|. .+..|+.-+++. .-.-+|+.++.|.+.- -+.
T Consensus 122 ~~~V~~~~k~y~ygkvPd~~~w~~~-----~da~yvyyCaNETVHGVEf~~~P----~~~~~~~vlVaDmSSn----flS 188 (370)
T KOG2790|consen 122 PNIVIPKLKSYTYGKVPDPSTWELN-----PDASYVYYCANETVHGVEFDFIP----VNDPKGAVLVADMSSN----FLS 188 (370)
T ss_pred ceEEeccccccccCcCCChhhcccC-----CCccEEEEecCceeeceecCCCC----CCCCCCceEEEecccc----hhc
Confidence 3 33333222 133 366655432 5556677776 235777532333 2234688888996421 112
Q ss_pred CCCcc-CCcEEEeCCCcccCCCCCCCCCcceeEEEeCCCCCCC
Q psy7357 180 RPGDY-GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221 (302)
Q Consensus 180 ~p~~~-gaDiv~~~~hK~l~~p~~~gGp~~G~l~~~~~l~~~l 221 (302)
+|-+. ..+++....+|..+ -.|+-++++|++++.+.
T Consensus 189 rpvDvsk~gvi~aGAQKN~G------~aG~Tvvivr~dllg~~ 225 (370)
T KOG2790|consen 189 RPVDVSKFGVIFAGAQKNVG------PAGVTVVIVRKDLLGNA 225 (370)
T ss_pred CCccchhcceEEeccccccC------ccccEEEEEehhhhccc
Confidence 33221 23677777788764 24888999998876544
No 411
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=58.99 E-value=20 Score=33.23 Aligned_cols=56 Identities=18% Similarity=0.288 Sum_probs=38.0
Q ss_pred CCCHHHHHHHHhcc---CCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCC
Q psy7357 116 TIDFSDLETKVKKN---KETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGAN 171 (302)
Q Consensus 116 ~iD~~~l~~~i~~~---~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~ 171 (302)
.++.+++++.++.. -.+-..|+++..-|.|+-.+...++.++|++.|+.+++|...
T Consensus 110 ~is~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~vilD~Sg 168 (310)
T COG1105 110 EISEAELEQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRILRQQGAKVILDTSG 168 (310)
T ss_pred CCCHHHHHHHHHHHHHhcccCCEEEEeCCCCCCCCHHHHHHHHHHHHhcCCeEEEECCh
Confidence 56666666655421 122344666653366776557899999999999999999864
No 412
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=57.30 E-value=7.8 Score=34.61 Aligned_cols=27 Identities=30% Similarity=0.577 Sum_probs=24.5
Q ss_pred CceeccccHHHHHHHHHHhCCEEEEecC
Q psy7357 143 TFGVFEENITDVCELIHEHGGQVYLDGA 170 (302)
Q Consensus 143 ~~G~~~~di~~I~~ia~~~g~llivD~a 170 (302)
.+|..+ +++++.+.||++|+.||+|.+
T Consensus 47 ~~Gt~~-d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 47 RFGTME-DFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp TTBHHH-HHHHHHHHHHHTTCEEEEEEE
T ss_pred ccchhh-hhhhhhhccccccceEEEeee
Confidence 458888 899999999999999999975
No 413
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=57.29 E-value=54 Score=29.32 Aligned_cols=73 Identities=14% Similarity=0.176 Sum_probs=43.2
Q ss_pred CCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCCCCCH---HHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHH
Q psy7357 81 HRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDF---SDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCEL 157 (302)
Q Consensus 81 ~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g~iD~---~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~i 157 (302)
++..+++. |......++.+|+++..+.. ++....+ .++.+.+++ .++++|+.. |+. +-+.+..+
T Consensus 169 ~~~~~v~~---H~af~Y~~~~ygl~~~~~~~-~~~eps~~~l~~l~~~ik~--~~v~~if~e-~~~------~~~~~~~l 235 (266)
T cd01018 169 KQRAFMVY---HPAWGYFARDYGLTQIPIEE-EGKEPSPADLKRLIDLAKE--KGVRVVFVQ-PQF------STKSAEAI 235 (266)
T ss_pred CCCeEEEE---CchhHHHHHHcCCEEEecCC-CCCCCCHHHHHHHHHHHHH--cCCCEEEEc-CCC------CcHHHHHH
Confidence 34455664 55566778899999876532 3444544 455555553 355656554 332 12344577
Q ss_pred HHHhCCEEE
Q psy7357 158 IHEHGGQVY 166 (302)
Q Consensus 158 a~~~g~lli 166 (302)
+++.|+.++
T Consensus 236 a~~~g~~v~ 244 (266)
T cd01018 236 AREIGAKVV 244 (266)
T ss_pred HHHcCCeEE
Confidence 788898764
No 414
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=55.55 E-value=31 Score=30.48 Aligned_cols=72 Identities=14% Similarity=0.020 Sum_probs=44.6
Q ss_pred CCHHHHHHHHhccCCCeEEEEEecCCCceec-cc----cHHHHHHHHHHhC--CEEEEecCCcccccccCCCCccCCcEE
Q psy7357 117 IDFSDLETKVKKNKETLSCLMITYPSTFGVF-EE----NITDVCELIHEHG--GQVYLDGANMNAQVGLCRPGDYGSDVS 189 (302)
Q Consensus 117 iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~-~~----di~~I~~ia~~~g--~llivD~a~~~~~~~~~~p~~~gaDiv 189 (302)
+.++.++..+.. -+...||-.+|.+.|.- .+ -++++.++.+++| ..+-+|+.- ....+....+.|+|++
T Consensus 129 Tp~~~i~~~l~~--vD~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI--~~~ti~~l~~aGaD~~ 204 (228)
T PRK08091 129 TPISLLEPYLDQ--IDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSM--TLELASYLKQHQIDWV 204 (228)
T ss_pred CCHHHHHHHHhh--cCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCC--CHHHHHHHHHCCCCEE
Confidence 578888888863 45677788888765532 21 3566666666665 557789731 1111122345789988
Q ss_pred EeC
Q psy7357 190 HLN 192 (302)
Q Consensus 190 ~~~ 192 (302)
+..
T Consensus 205 V~G 207 (228)
T PRK08091 205 VSG 207 (228)
T ss_pred EEC
Confidence 875
No 415
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=55.33 E-value=68 Score=23.86 Aligned_cols=63 Identities=14% Similarity=0.104 Sum_probs=38.6
Q ss_pred HHHHHhCCCEEEEeecCCCCCCCH--HHHHHHHhccCCCeEEEEEec-CCCceeccccHHHHHHHHHHhCCEEEEe
Q psy7357 96 PASAQMAGMSVEPVSVRKDGTIDF--SDLETKVKKNKETLSCLMITY-PSTFGVFEENITDVCELIHEHGGQVYLD 168 (302)
Q Consensus 96 ~~~~~~~g~~v~~i~~~~~g~iD~--~~l~~~i~~~~~~t~~V~i~~-Pn~~G~~~~di~~I~~ia~~~g~llivD 168 (302)
...++..|++.+.. ..++.... ..|++.+. ++.+|++.. -.... -...+.+.|+++|.++++-
T Consensus 16 ~~~~~~~G~~~~~h--g~~~~~~~~~~~l~~~i~----~aD~VIv~t~~vsH~----~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 16 KRILEKYGGKLIHH--GRDGGDEKKASRLPSKIK----KADLVIVFTDYVSHN----AMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred HHHHHHcCCEEEEE--ecCCCCccchhHHHHhcC----CCCEEEEEeCCcChH----HHHHHHHHHHHcCCcEEEE
Confidence 44667889998888 23332222 34888875 344455433 12222 2567888899999998754
No 416
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=53.69 E-value=32 Score=30.39 Aligned_cols=87 Identities=20% Similarity=0.220 Sum_probs=50.5
Q ss_pred HHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCcee-ccc----cHHHHHHHHHHhC--CEEEEecCC
Q psy7357 99 AQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGV-FEE----NITDVCELIHEHG--GQVYLDGAN 171 (302)
Q Consensus 99 ~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~-~~~----di~~I~~ia~~~g--~llivD~a~ 171 (302)
.+..|+++ -+-+++ .++++.++..+.. -+...||-.+|.+.|. +.+ -++++.++.+++| ..+-+|+-
T Consensus 104 Ik~~G~ka-GlalnP--~T~~~~l~~~l~~--vD~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGG- 177 (229)
T PRK09722 104 IRRAGMKV-GLVLNP--ETPVESIKYYIHL--LDKITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGS- 177 (229)
T ss_pred HHHcCCCE-EEEeCC--CCCHHHHHHHHHh--cCEEEEEEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECC-
Confidence 34556543 222222 2578888888863 4567778888876563 211 3566666666665 56779973
Q ss_pred cccccccCCCCccCCcEEEeC
Q psy7357 172 MNAQVGLCRPGDYGSDVSHLN 192 (302)
Q Consensus 172 ~~~~~~~~~p~~~gaDiv~~~ 192 (302)
+....+....+.|+|+++.+
T Consensus 178 -I~~~~i~~~~~aGad~~V~G 197 (229)
T PRK09722 178 -CNQKTYEKLMEAGADVFIVG 197 (229)
T ss_pred -CCHHHHHHHHHcCCCEEEEC
Confidence 11111112245689998874
No 417
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=53.55 E-value=64 Score=29.10 Aligned_cols=76 Identities=13% Similarity=0.104 Sum_probs=42.9
Q ss_pred CCCEEEEcCCCCcccHHHHHhCCCEEEEee-cCCCCCCCHHHHHHHHhccC-CCeEEEEEecCCCceeccccHHHHHHHH
Q psy7357 81 HRNVCLIPVSAHGTNPASAQMAGMSVEPVS-VRKDGTIDFSDLETKVKKNK-ETLSCLMITYPSTFGVFEENITDVCELI 158 (302)
Q Consensus 81 ~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~-~~~~g~iD~~~l~~~i~~~~-~~t~~V~i~~Pn~~G~~~~di~~I~~ia 158 (302)
++..+++. |......++.+|++++.+. ..++....+.+|.+.++..+ .++++|+... ++ +-+.+..++
T Consensus 170 ~~~~~v~~---H~af~Y~~~~~gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~-~~------~~~~~~~la 239 (282)
T cd01017 170 KGKTFVTQ---HAAFGYLARRYGLKQIAIVGVSPEVEPSPKQLAELVEFVKKSDVKYIFFEE-NA------SSKIAETLA 239 (282)
T ss_pred CCCeEEEe---cccHHHHHHHCCCeEEecccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeC-CC------ChHHHHHHH
Confidence 34556655 5556678889999987653 22334455555555443211 3556565544 43 123444577
Q ss_pred HHhCCEEE
Q psy7357 159 HEHGGQVY 166 (302)
Q Consensus 159 ~~~g~lli 166 (302)
++.|+.++
T Consensus 240 ~~~g~~v~ 247 (282)
T cd01017 240 KETGAKLL 247 (282)
T ss_pred HHcCCcEE
Confidence 88888754
No 418
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=53.34 E-value=49 Score=26.66 Aligned_cols=58 Identities=10% Similarity=0.031 Sum_probs=40.4
Q ss_pred HHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCC
Q psy7357 98 SAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGG 163 (302)
Q Consensus 98 ~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~ 163 (302)
..+..|++|+.+..+ ..++++-+++.++ +..+|.+++=+. .... .++++.+.+++.|.
T Consensus 24 ~l~~~GfeVi~LG~~----v~~e~~v~aa~~~--~adiVglS~l~~-~~~~-~~~~~~~~l~~~gl 81 (134)
T TIGR01501 24 AFTNAGFNVVNLGVL----SPQEEFIKAAIET--KADAILVSSLYG-HGEI-DCKGLRQKCDEAGL 81 (134)
T ss_pred HHHHCCCEEEECCCC----CCHHHHHHHHHHc--CCCEEEEecccc-cCHH-HHHHHHHHHHHCCC
Confidence 456889999998875 6788888887754 344455554232 3444 68899999998864
No 419
>PRK14057 epimerase; Provisional
Probab=51.57 E-value=37 Score=30.49 Aligned_cols=72 Identities=13% Similarity=0.053 Sum_probs=45.1
Q ss_pred CCHHHHHHHHhccCCCeEEEEEecCCCcee-ccc----cHHHHHHHHHHhC--CEEEEecCCcccccccCCCCccCCcEE
Q psy7357 117 IDFSDLETKVKKNKETLSCLMITYPSTFGV-FEE----NITDVCELIHEHG--GQVYLDGANMNAQVGLCRPGDYGSDVS 189 (302)
Q Consensus 117 iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~-~~~----di~~I~~ia~~~g--~llivD~a~~~~~~~~~~p~~~gaDiv 189 (302)
..++.++..+.. -+...||-.+|.+.|. +.+ -++++.++.+++| ..+-+|+. +....+....+.|+|++
T Consensus 143 Tp~e~i~~~l~~--vD~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGG--I~~~ti~~l~~aGad~~ 218 (254)
T PRK14057 143 TPLDVIIPILSD--VEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGS--LTQDQLPSLIAQGIDRV 218 (254)
T ss_pred CCHHHHHHHHHh--CCEEEEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECC--CCHHHHHHHHHCCCCEE
Confidence 578888888863 4667778888876663 211 3566666666665 66779974 11111112245689998
Q ss_pred EeC
Q psy7357 190 HLN 192 (302)
Q Consensus 190 ~~~ 192 (302)
+..
T Consensus 219 V~G 221 (254)
T PRK14057 219 VSG 221 (254)
T ss_pred EEC
Confidence 875
No 420
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=51.51 E-value=57 Score=26.07 Aligned_cols=58 Identities=12% Similarity=0.052 Sum_probs=39.9
Q ss_pred HHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCC
Q psy7357 98 SAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGG 163 (302)
Q Consensus 98 ~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~ 163 (302)
..+..|++|+.+..+ ..++++-+++.++++ .+|.+++=++ .... .++++.+..++.|.
T Consensus 22 ~L~~~GfeVidLG~~----v~~e~~v~aa~~~~a--diVglS~L~t-~~~~-~~~~~~~~l~~~gl 79 (128)
T cd02072 22 AFTEAGFNVVNLGVL----SPQEEFIDAAIETDA--DAILVSSLYG-HGEI-DCKGLREKCDEAGL 79 (128)
T ss_pred HHHHCCCEEEECCCC----CCHHHHHHHHHHcCC--CEEEEecccc-CCHH-HHHHHHHHHHHCCC
Confidence 456789999988875 567888777765434 4455554232 3445 68899999998764
No 421
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=51.41 E-value=33 Score=30.06 Aligned_cols=87 Identities=21% Similarity=0.247 Sum_probs=48.2
Q ss_pred HHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCce--eccc---cHHHHHHHHHHhC--CEEEEecCC
Q psy7357 99 AQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFG--VFEE---NITDVCELIHEHG--GQVYLDGAN 171 (302)
Q Consensus 99 ~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G--~~~~---di~~I~~ia~~~g--~llivD~a~ 171 (302)
.+..|++.- +-+++ .+.++.++..+.. -+...+|-.+|.+.| .++. .++++.++.+++| ..+.+|+-
T Consensus 102 ik~~g~k~G-lalnP--~Tp~~~i~~~l~~--~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGG- 175 (220)
T PRK08883 102 IKEHGCQAG-VVLNP--ATPLHHLEYIMDK--VDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGG- 175 (220)
T ss_pred HHHcCCcEE-EEeCC--CCCHHHHHHHHHh--CCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECC-
Confidence 445565542 22222 2578888888863 455667777887766 3322 3455555555544 66778873
Q ss_pred cccccccCCCCccCCcEEEeC
Q psy7357 172 MNAQVGLCRPGDYGSDVSHLN 192 (302)
Q Consensus 172 ~~~~~~~~~p~~~gaDiv~~~ 192 (302)
+..-.+....+.|+|+++..
T Consensus 176 -I~~eni~~l~~aGAd~vVvG 195 (220)
T PRK08883 176 -VKVDNIREIAEAGADMFVAG 195 (220)
T ss_pred -CCHHHHHHHHHcCCCEEEEe
Confidence 11111122245689988764
No 422
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=50.43 E-value=52 Score=25.64 Aligned_cols=49 Identities=16% Similarity=0.258 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEe
Q psy7357 115 GTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLD 168 (302)
Q Consensus 115 g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD 168 (302)
-.++++++++.+. .++-.|++.. .-+|.++ =.++..+.+++.++-++.-
T Consensus 47 Hkl~~eEle~~le---e~~E~ivvGT-G~~G~l~-l~~ea~e~~r~k~~~vi~~ 95 (121)
T COG1504 47 HKLALEELEELLE---EGPEVIVVGT-GQSGMLE-LSEEAREFFRKKGCEVIEL 95 (121)
T ss_pred cccCHHHHHHHHh---cCCcEEEEec-CceeEEE-eCHHHHHHHHhcCCeEEEe
Confidence 4689999999998 4555566655 4568887 4778999999999887643
No 423
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=49.94 E-value=13 Score=36.51 Aligned_cols=27 Identities=30% Similarity=0.567 Sum_probs=24.9
Q ss_pred CceeccccHHHHHHHHHHhCCEEEEecC
Q psy7357 143 TFGVFEENITDVCELIHEHGGQVYLDGA 170 (302)
Q Consensus 143 ~~G~~~~di~~I~~ia~~~g~llivD~a 170 (302)
-+|..+ |++++++.||++|+.||+|.+
T Consensus 76 ~fGt~~-dl~~Li~~~H~~Gi~vi~D~V 102 (479)
T PRK09441 76 KYGTKE-ELLNAIDALHENGIKVYADVV 102 (479)
T ss_pred CcCCHH-HHHHHHHHHHHCCCEEEEEEC
Confidence 468988 899999999999999999986
No 424
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=49.27 E-value=52 Score=28.43 Aligned_cols=62 Identities=16% Similarity=0.213 Sum_probs=39.2
Q ss_pred HHHhCCCEEEEe-ecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEE
Q psy7357 98 SAQMAGMSVEPV-SVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYL 167 (302)
Q Consensus 98 ~~~~~g~~v~~i-~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~lliv 167 (302)
.++..|.++..+ +...+..--.+.++.++. .+..+|++...++. ....+.+-+++.|++++.
T Consensus 23 ~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~---~~~d~Iiv~~~~~~-----~~~~~l~~~~~~gIpvv~ 85 (257)
T PF13407_consen 23 AAKELGYEVEIVFDAQNDPEEQIEQIEQAIS---QGVDGIIVSPVDPD-----SLAPFLEKAKAAGIPVVT 85 (257)
T ss_dssp HHHHHTCEEEEEEESTTTHHHHHHHHHHHHH---TTESEEEEESSSTT-----TTHHHHHHHHHTTSEEEE
T ss_pred HHHHcCCEEEEeCCCCCCHHHHHHHHHHHHH---hcCCEEEecCCCHH-----HHHHHHHHHhhcCceEEE
Confidence 345778888886 443333333566777776 56778887764442 244555667889998763
No 425
>COG2121 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.64 E-value=1.8e+02 Score=25.40 Aligned_cols=68 Identities=31% Similarity=0.396 Sum_probs=41.5
Q ss_pred HHHHHHHHHhCCCeeeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccH-------HHHHhCCCEEEEee
Q psy7357 38 ELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNP-------ASAQMAGMSVEPVS 110 (302)
Q Consensus 38 e~~~~l~~l~g~~~~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~-------~~~~~~g~~v~~i~ 110 (302)
|+-..+-+.||++...=+.+=| +. .++.++..+++ +..+.++.+|..+|... ..++..|..++.+.
T Consensus 81 EliA~~l~kfG~~~IRGSs~Kg--g~-~Alr~l~k~Lk----~G~~i~itpDgPkGp~~~~~~Gii~LA~~sg~pi~pv~ 153 (214)
T COG2121 81 ELIARLLEKFGLRVIRGSSNKG--GI-SALRALLKALK----QGKSIAITPDGPKGPVHKIGDGIIALAQKSGVPIIPVG 153 (214)
T ss_pred HHHHHHHHHcCceEEeccCCcc--hH-HHHHHHHHHHh----CCCcEEEcCCCCCCCceeccchhhHhhHhcCCCeEEEE
Confidence 5666777889998754333322 23 34444444442 45678888888886542 24667788877776
Q ss_pred cC
Q psy7357 111 VR 112 (302)
Q Consensus 111 ~~ 112 (302)
+.
T Consensus 154 ~~ 155 (214)
T COG2121 154 VA 155 (214)
T ss_pred Ee
Confidence 53
No 426
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=47.61 E-value=99 Score=28.01 Aligned_cols=75 Identities=15% Similarity=0.139 Sum_probs=44.3
Q ss_pred CCEEEEcCCCCcccHHHHHhCCCEEEEe-ecCCCCCCCHHHHHHHHhccC-CCeEEEEEecCCCceeccccHHHHHHHHH
Q psy7357 82 RNVCLIPVSAHGTNPASAQMAGMSVEPV-SVRKDGTIDFSDLETKVKKNK-ETLSCLMITYPSTFGVFEENITDVCELIH 159 (302)
Q Consensus 82 ~d~Vlv~~~~hg~~~~~~~~~g~~v~~i-~~~~~g~iD~~~l~~~i~~~~-~~t~~V~i~~Pn~~G~~~~di~~I~~ia~ 159 (302)
+..+++. |+.....++.+|++++.+ ....+....+.+|.+.++..+ .++++|+.. |+. +-+.+..|++
T Consensus 179 ~~~~v~~---H~af~Yl~~~~gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e-~~~------~~~~~~~ia~ 248 (286)
T cd01019 179 TKPFFVF---HDAYGYFEKRYGLTQAGVFTIDPEIDPGAKRLAKIRKEIKEKGATCVFAE-PQF------HPKIAETLAE 248 (286)
T ss_pred CCeEEEe---cccHHHHHHHcCCceeeeecCCCCCCCCHHHHHHHHHHHHHcCCcEEEec-CCC------ChHHHHHHHH
Confidence 4455554 555667788999987654 333345666666666654321 456666544 343 2345566677
Q ss_pred HhCCEEE
Q psy7357 160 EHGGQVY 166 (302)
Q Consensus 160 ~~g~lli 166 (302)
+.|+.++
T Consensus 249 ~~g~~v~ 255 (286)
T cd01019 249 GTGAKVG 255 (286)
T ss_pred hcCceEE
Confidence 8787653
No 427
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=45.75 E-value=1.1e+02 Score=23.65 Aligned_cols=64 Identities=19% Similarity=0.168 Sum_probs=41.5
Q ss_pred HHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHh---CCEEEEec
Q psy7357 98 SAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEH---GGQVYLDG 169 (302)
Q Consensus 98 ~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~---g~llivD~ 169 (302)
..+..|++++....+ +.++++.+.+.+.++ ..|.++.-+. -..+ .++++.+..++. +..+++=+
T Consensus 22 ~l~~~G~~vi~lG~~----vp~e~~~~~a~~~~~--d~V~iS~~~~-~~~~-~~~~~~~~L~~~~~~~i~i~~GG 88 (122)
T cd02071 22 ALRDAGFEVIYTGLR----QTPEEIVEAAIQEDV--DVIGLSSLSG-GHMT-LFPEVIELLRELGAGDILVVGGG 88 (122)
T ss_pred HHHHCCCEEEECCCC----CCHHHHHHHHHHcCC--CEEEEcccch-hhHH-HHHHHHHHHHhcCCCCCEEEEEC
Confidence 456889999988753 677888777775434 4466655332 2334 578888888876 44555544
No 428
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=45.21 E-value=77 Score=28.78 Aligned_cols=74 Identities=12% Similarity=0.188 Sum_probs=43.5
Q ss_pred CCEEEEcCCCCcccHHHHHhCCCEEEEe-ecCCCCCCCHHHHHHHHhccC-CCeEEEEEecCCCceeccccHHHHHHHHH
Q psy7357 82 RNVCLIPVSAHGTNPASAQMAGMSVEPV-SVRKDGTIDFSDLETKVKKNK-ETLSCLMITYPSTFGVFEENITDVCELIH 159 (302)
Q Consensus 82 ~d~Vlv~~~~hg~~~~~~~~~g~~v~~i-~~~~~g~iD~~~l~~~i~~~~-~~t~~V~i~~Pn~~G~~~~di~~I~~ia~ 159 (302)
+..+++. |......++.+|++++.+ ...++....+.+|.+.++.-+ .++++|+... .. +-+.+..+++
T Consensus 177 ~~~~v~~---H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~-~~------~~~~~~~ia~ 246 (287)
T cd01137 177 KRKLVTS---EGAFSYFAKAYGLKEAYLWPINTEEEGTPKQVATLIEQVKKEKVPAVFVES-TV------NDRLMKQVAK 246 (287)
T ss_pred cCEEEEe---cccHHHHHHHcCCeEeecccCCCCCCCCHHHHHHHHHHHHHhCCCEEEEeC-CC------ChHHHHHHHH
Confidence 4456665 555667788999998764 233344555555555543221 3566666543 42 1245567788
Q ss_pred HhCCEE
Q psy7357 160 EHGGQV 165 (302)
Q Consensus 160 ~~g~ll 165 (302)
+.|+.+
T Consensus 247 ~~gv~v 252 (287)
T cd01137 247 ETGAKI 252 (287)
T ss_pred HhCCcc
Confidence 888875
No 429
>TIGR03772 anch_rpt_subst anchored repeat ABC transporter, substrate-binding protein. Members of this protein family are ABC transporter permease subunits as identified by pfam00950, but additionally contain the Actinobacterial insert domain described by TIGR03769. Some homologs (lacking the insert) have been described as transporters of manganese or of chelated iron. Members of this family typically are found along with an ATP-binding cassette protein, a permease, and an LPXTG-anchored protein with two or three copies of the TIGR03769 insert that occurs just once in this protein family.
Probab=45.06 E-value=3e+02 Score=27.22 Aligned_cols=77 Identities=13% Similarity=0.132 Sum_probs=45.1
Q ss_pred CCEEEEcCCCCcccHHHHHhCCCEEEEee-cCCCCCCCHHHHHHHHhccC-CCeEEEEEecCCCceeccccHHHHHHHHH
Q psy7357 82 RNVCLIPVSAHGTNPASAQMAGMSVEPVS-VRKDGTIDFSDLETKVKKNK-ETLSCLMITYPSTFGVFEENITDVCELIH 159 (302)
Q Consensus 82 ~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~-~~~~g~iD~~~l~~~i~~~~-~~t~~V~i~~Pn~~G~~~~di~~I~~ia~ 159 (302)
+..+++. |..+...++.+|+++..+- ..++....+.+|.++++..+ .++++|+... +.. . ..+.+..+++
T Consensus 371 ~r~vvt~---H~af~YLa~~YGL~~~~~~~~~~~~ePS~~~L~~Li~~IK~~~V~~IF~Ep-q~~---~-~~~~l~~IA~ 442 (479)
T TIGR03772 371 RRHLITT---HDAYSYLGQAYGLNIAGFVTPNPAVEPSLADRRRLTRTIENLKVPAVFLEP-NLA---A-RSTTLNEIAD 442 (479)
T ss_pred CCEEEEE---CCcHHHHHHHCCCeEEeeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeC-CCC---C-chHHHHHHHH
Confidence 4566666 5556778889999877542 33344555555555443221 4566666543 432 1 3445777788
Q ss_pred HhCCEEE
Q psy7357 160 EHGGQVY 166 (302)
Q Consensus 160 ~~g~lli 166 (302)
+.|+.++
T Consensus 443 e~Gv~V~ 449 (479)
T TIGR03772 443 ELGVRVC 449 (479)
T ss_pred HcCCcEE
Confidence 9898763
No 430
>PLN00196 alpha-amylase; Provisional
Probab=44.24 E-value=19 Score=34.96 Aligned_cols=29 Identities=28% Similarity=0.346 Sum_probs=25.7
Q ss_pred CCCceeccccHHHHHHHHHHhCCEEEEecC
Q psy7357 141 PSTFGVFEENITDVCELIHEHGGQVYLDGA 170 (302)
Q Consensus 141 Pn~~G~~~~di~~I~~ia~~~g~llivD~a 170 (302)
|+-+|..+ +++++.+.||++|+.+|+|.+
T Consensus 85 ~~~fGt~~-elk~Lv~~aH~~GIkVilDvV 113 (428)
T PLN00196 85 ASKYGNEA-QLKSLIEAFHGKGVQVIADIV 113 (428)
T ss_pred cccCCCHH-HHHHHHHHHHHCCCEEEEEEC
Confidence 34579988 799999999999999999986
No 431
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=43.96 E-value=71 Score=28.19 Aligned_cols=75 Identities=17% Similarity=0.145 Sum_probs=42.0
Q ss_pred CCEEEEcCCCCcccHHHHHhCCCEEEEee-cCCCCCCCHHHHHHHHhcc-CCCeEEEEEecCCCceeccccHHHHHHHHH
Q psy7357 82 RNVCLIPVSAHGTNPASAQMAGMSVEPVS-VRKDGTIDFSDLETKVKKN-KETLSCLMITYPSTFGVFEENITDVCELIH 159 (302)
Q Consensus 82 ~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~-~~~~g~iD~~~l~~~i~~~-~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~ 159 (302)
+..+++. |......++.+|+++..+- ..++....+.+|.+.++.- ..++++|+... +. +-+.+..+++
T Consensus 150 ~~~~v~~---h~~~~Y~~~~~gl~~~~~~~~~~~~~ps~~~l~~l~~~ik~~~v~~i~~e~-~~------~~~~~~~la~ 219 (256)
T PF01297_consen 150 GRPVVVY---HDAFQYFAKRYGLKVIGVIEISPGEEPSPKDLAELIKLIKENKVKCIFTEP-QF------SSKLAEALAK 219 (256)
T ss_dssp GGEEEEE---ESTTHHHHHHTT-EEEEEESSSSSSSS-HHHHHHHHHHHHHTT-SEEEEET-TS-------THHHHHHHH
T ss_pred CCeEEEE---ChHHHHHHHhcCCceeeeeccccccCCCHHHHHHHHHHhhhcCCcEEEecC-CC------ChHHHHHHHH
Confidence 3566665 6667788899999988766 3344556666655555321 13555566543 42 1234445678
Q ss_pred HhCCEEE
Q psy7357 160 EHGGQVY 166 (302)
Q Consensus 160 ~~g~lli 166 (302)
+.|+.++
T Consensus 220 ~~g~~vv 226 (256)
T PF01297_consen 220 ETGVKVV 226 (256)
T ss_dssp CCT-EEE
T ss_pred HcCCcEE
Confidence 8888864
No 432
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=43.32 E-value=61 Score=28.46 Aligned_cols=72 Identities=17% Similarity=0.157 Sum_probs=43.3
Q ss_pred CCHHHHHHHHhccCCCeEEEEEecCCCcee-c-cc---cHHHHHHHHHHhC--CEEEEecCCcccccccCCCCccCCcEE
Q psy7357 117 IDFSDLETKVKKNKETLSCLMITYPSTFGV-F-EE---NITDVCELIHEHG--GQVYLDGANMNAQVGLCRPGDYGSDVS 189 (302)
Q Consensus 117 iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~-~-~~---di~~I~~ia~~~g--~llivD~a~~~~~~~~~~p~~~gaDiv 189 (302)
..++.++..+.. -+...||-.+|.+.|. + +. .++++.++.++++ ..+-+|+- +..-.+....+.|+|++
T Consensus 121 T~~~~i~~~l~~--vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGG--I~~eti~~l~~aGaDi~ 196 (223)
T PRK08745 121 TPVDILDWVLPE--LDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGG--VKADNIGAIAAAGADTF 196 (223)
T ss_pred CCHHHHHHHHhh--cCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECC--CCHHHHHHHHHcCCCEE
Confidence 578888888863 4566777788876563 2 21 3555556655654 56778973 11111112245689988
Q ss_pred EeC
Q psy7357 190 HLN 192 (302)
Q Consensus 190 ~~~ 192 (302)
+..
T Consensus 197 V~G 199 (223)
T PRK08745 197 VAG 199 (223)
T ss_pred EEC
Confidence 875
No 433
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=42.27 E-value=1.2e+02 Score=28.01 Aligned_cols=75 Identities=7% Similarity=-0.019 Sum_probs=43.5
Q ss_pred CCEEEEcCCCCcccHHHHHhCCCEEEEe-ecCCCCCCCHHHHHHHHhccC-CCeEEEEEecCCCceeccccHHHHHHHHH
Q psy7357 82 RNVCLIPVSAHGTNPASAQMAGMSVEPV-SVRKDGTIDFSDLETKVKKNK-ETLSCLMITYPSTFGVFEENITDVCELIH 159 (302)
Q Consensus 82 ~d~Vlv~~~~hg~~~~~~~~~g~~v~~i-~~~~~g~iD~~~l~~~i~~~~-~~t~~V~i~~Pn~~G~~~~di~~I~~ia~ 159 (302)
+..+++. |......++.+|+++..+ ...++....+.+|.++++..+ .++++|+... ++ +-+.+..+++
T Consensus 203 ~~~~i~~---H~af~Yf~~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~-~~------~~~~~~~la~ 272 (311)
T PRK09545 203 GKGYFVF---HDAYGYFEKHYGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATCVFAEP-QF------RPAVIESVAK 272 (311)
T ss_pred CCcEEEE---CchHHHHHHhCCCceeeeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEecC-CC------ChHHHHHHHH
Confidence 3445554 666677888899987643 333344566666665554322 3556666553 42 2345556677
Q ss_pred HhCCEEE
Q psy7357 160 EHGGQVY 166 (302)
Q Consensus 160 ~~g~lli 166 (302)
+.|+.++
T Consensus 273 e~g~~v~ 279 (311)
T PRK09545 273 GTSVRMG 279 (311)
T ss_pred hcCCeEE
Confidence 8887753
No 434
>KOG4132|consensus
Probab=41.98 E-value=29 Score=30.63 Aligned_cols=47 Identities=13% Similarity=0.184 Sum_probs=38.8
Q ss_pred cHHHHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCC
Q psy7357 95 NPASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPS 142 (302)
Q Consensus 95 ~~~~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn 142 (302)
|....+.+|++.++||+-......++++++.+.. .++-+.+++++|-
T Consensus 19 Y~~~l~~~~~epifIP~l~f~f~~l~~lr~kL~~-p~kY~giIfTSpR 65 (260)
T KOG4132|consen 19 YEEELRSYGLEPIFIPVLSFTFVNLQQLRAKLNN-PPKYAGIIFTSPR 65 (260)
T ss_pred HHHHHHhcCCCceeecceeeeeccHHHHHHHhcC-chhhceeEEeChH
Confidence 3446778999999999987788899999999974 3568889999874
No 435
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=41.09 E-value=1.1e+02 Score=26.29 Aligned_cols=59 Identities=17% Similarity=0.215 Sum_probs=28.2
Q ss_pred HHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEE
Q psy7357 99 AQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVY 166 (302)
Q Consensus 99 ~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~lli 166 (302)
++..|++++..+.+.+..-..+.+++++. .++.+|++...+. . .. +..+.+++.|++++
T Consensus 25 ~~~~g~~~~~~~~~~~~~~~~~~~~~l~~---~~vdgiii~~~~~----~-~~-~~~~~~~~~~ipvV 83 (266)
T cd06282 25 ARAAGYSLLLATTDYDAEREADAVETLLR---QRVDGLILTVADA----A-TS-PALDLLDAERVPYV 83 (266)
T ss_pred HHHCCCEEEEeeCCCCHHHHHHHHHHHHh---cCCCEEEEecCCC----C-ch-HHHHHHhhCCCCEE
Confidence 44667777766543221112233444444 4556666643222 1 11 24455666777653
No 436
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=40.85 E-value=65 Score=28.94 Aligned_cols=72 Identities=14% Similarity=0.206 Sum_probs=43.0
Q ss_pred EEEcCCCCcccHH-------HHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHH
Q psy7357 85 CLIPVSAHGTNPA-------SAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCEL 157 (302)
Q Consensus 85 Vlv~~~~hg~~~~-------~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~i 157 (302)
|++|+...+-+.. .++..|+.+..+..+.+.... +.++.+++ -++.++++..+.. +.+.+.++
T Consensus 6 vivp~~~npff~~ii~gIe~~a~~~Gy~l~l~~t~~~~~~e-~~i~~l~~---~~vDGiI~~s~~~------~~~~l~~~ 75 (279)
T PF00532_consen 6 VIVPDISNPFFAEIIRGIEQEAREHGYQLLLCNTGDDEEKE-EYIELLLQ---RRVDGIILASSEN------DDEELRRL 75 (279)
T ss_dssp EEESSSTSHHHHHHHHHHHHHHHHTTCEEEEEEETTTHHHH-HHHHHHHH---TTSSEEEEESSSC------TCHHHHHH
T ss_pred EEECCCCCcHHHHHHHHHHHHHHHcCCEEEEecCCCchHHH-HHHHHHHh---cCCCEEEEecccC------ChHHHHHH
Confidence 6777765433322 345889999888875432222 44544444 5778888875332 34566666
Q ss_pred HHHhCCEEEE
Q psy7357 158 IHEHGGQVYL 167 (302)
Q Consensus 158 a~~~g~lliv 167 (302)
.++ ++++++
T Consensus 76 ~~~-~iPvV~ 84 (279)
T PF00532_consen 76 IKS-GIPVVL 84 (279)
T ss_dssp HHT-TSEEEE
T ss_pred HHc-CCCEEE
Confidence 666 787653
No 437
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=40.11 E-value=1.7e+02 Score=28.04 Aligned_cols=96 Identities=20% Similarity=0.211 Sum_probs=56.3
Q ss_pred eeeEeeCchHH--H-HHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHH-------HhCCCEEEEeecCCCCCCCHH
Q psy7357 51 KISFQPNSGAQ--G-EYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASA-------QMAGMSVEPVSVRKDGTIDFS 120 (302)
Q Consensus 51 ~~~~~~~~Ga~--a-~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~-------~~~g~~v~~i~~~~~g~iD~~ 120 (302)
...+.|.-|.. . ....+...+.|.+ +...+...|+-++.||+....+ ...|.+|+.+.+... |+.
T Consensus 215 i~~IaP~HG~i~~~~~~~i~~~Y~~W~~--~~~~~~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~~~---~~~ 289 (388)
T COG0426 215 IEMIAPSHGPIWRGNPKEIVEAYRDWAE--GQPKGKVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLEDA---DPS 289 (388)
T ss_pred ccEEEcCCCceeeCCHHHHHHHHHHHHc--cCCcceEEEEEecccCCHHHHHHHHHHHhhhcCCceEEEEcccC---CHH
Confidence 34555666651 0 1122334444542 2233446677778888764432 256788888887543 888
Q ss_pred HHHHHHhccCCCeEEEEEecCCCceeccccHHHHH
Q psy7357 121 DLETKVKKNKETLSCLMITYPSTFGVFEENITDVC 155 (302)
Q Consensus 121 ~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~ 155 (302)
++.+.+- +.+++++.+|+..+-..|.+....
T Consensus 290 eI~~~i~----~a~~~vvGsPT~~~~~~p~i~~~l 320 (388)
T COG0426 290 EIVEEIL----DAKGLVVGSPTINGGAHPPIQTAL 320 (388)
T ss_pred HHHHHHh----hcceEEEecCcccCCCCchHHHHH
Confidence 8888885 568899999874333332455444
No 438
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=39.94 E-value=1.2e+02 Score=26.08 Aligned_cols=24 Identities=13% Similarity=0.019 Sum_probs=19.1
Q ss_pred eeccccHHHHHHHHHHhCCEEEEec
Q psy7357 145 GVFEENITDVCELIHEHGGQVYLDG 169 (302)
Q Consensus 145 G~~~~di~~I~~ia~~~g~llivD~ 169 (302)
|.-. ++.++.+++|++|+.+|.=.
T Consensus 120 G~s~-~v~~a~~~Ak~~G~~vI~IT 143 (196)
T PRK10886 120 GNSR-DIVKAVEAAVTRDMTIVALT 143 (196)
T ss_pred CCCH-HHHHHHHHHHHCCCEEEEEe
Confidence 5545 68899999999999987543
No 439
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=38.25 E-value=2.7e+02 Score=24.16 Aligned_cols=64 Identities=14% Similarity=0.244 Sum_probs=43.0
Q ss_pred HHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhC--CEEEEec
Q psy7357 98 SAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHG--GQVYLDG 169 (302)
Q Consensus 98 ~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g--~llivD~ 169 (302)
..+..|++++.+..+ +.++++.+.+.+++++. |.++.-.+ .... +++++.+..++.+ ..+++=+
T Consensus 111 ~l~~~G~~Vi~LG~~----vp~e~~v~~~~~~~~~~--V~lS~~~~-~~~~-~~~~~i~~L~~~~~~~~i~vGG 176 (213)
T cd02069 111 ILSNNGYEVIDLGVM----VPIEKILEAAKEHKADI--IGLSGLLV-PSLD-EMVEVAEEMNRRGIKIPLLIGG 176 (213)
T ss_pred HHHhCCCEEEECCCC----CCHHHHHHHHHHcCCCE--EEEccchh-ccHH-HHHHHHHHHHhcCCCCeEEEEC
Confidence 456889999998864 78899999998766655 44433222 2344 5778777777764 5555554
No 440
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=38.07 E-value=32 Score=30.77 Aligned_cols=47 Identities=15% Similarity=0.173 Sum_probs=30.1
Q ss_pred CCC-CHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEE
Q psy7357 115 GTI-DFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVY 166 (302)
Q Consensus 115 g~i-D~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~lli 166 (302)
|.+ |.++|++.+.+ .++.+|+=.. .|+-..- -+.+.+.|++.|+.++
T Consensus 50 G~lg~~~~l~~~l~~--~~i~~vIDAT-HPfA~~i--s~na~~a~~~~~ipyl 97 (249)
T PF02571_consen 50 GRLGDEEGLAEFLRE--NGIDAVIDAT-HPFAAEI--SQNAIEACRELGIPYL 97 (249)
T ss_pred CCCCCHHHHHHHHHh--CCCcEEEECC-CchHHHH--HHHHHHHHhhcCcceE
Confidence 556 99999999985 3455555332 3433321 2466777888898875
No 441
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=37.88 E-value=2.9e+02 Score=26.00 Aligned_cols=73 Identities=16% Similarity=0.196 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHhccCCCeEEEEEe-cC-C------CceeccccHH---HHHHHHHHhCCEEEEecCCcccccccCCCCcc
Q psy7357 116 TIDFSDLETKVKKNKETLSCLMIT-YP-S------TFGVFEENIT---DVCELIHEHGGQVYLDGANMNAQVGLCRPGDY 184 (302)
Q Consensus 116 ~iD~~~l~~~i~~~~~~t~~V~i~-~P-n------~~G~~~~di~---~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~ 184 (302)
..++++.+++++ -...+|.+. .| + .+|+-.|.+. ++++.+++++..+|.|+--- ..+.+...-..
T Consensus 158 V~T~e~a~~Li~---aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr-~~gDI~KALA~ 233 (343)
T TIGR01305 158 VVTGEMVEELIL---SGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCT-CPGDVAKAFGA 233 (343)
T ss_pred ccCHHHHHHHHH---cCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcC-chhHHHHHHHc
Confidence 568999999987 445556554 12 1 2333322344 45555556678899997311 11112222346
Q ss_pred CCcEEEeC
Q psy7357 185 GSDVSHLN 192 (302)
Q Consensus 185 gaDiv~~~ 192 (302)
|+|.+...
T Consensus 234 GAd~VMlG 241 (343)
T TIGR01305 234 GADFVMLG 241 (343)
T ss_pred CCCEEEEC
Confidence 88888774
No 442
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=37.09 E-value=30 Score=35.19 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=25.9
Q ss_pred CCceeccccHHHHHHHHHHhCCEEEEecCC
Q psy7357 142 STFGVFEENITDVCELIHEHGGQVYLDGAN 171 (302)
Q Consensus 142 n~~G~~~~di~~I~~ia~~~g~llivD~a~ 171 (302)
+.+|.-+ |++++.+.||++|+-||+|.+.
T Consensus 208 sryGtPe-dfk~fVD~aH~~GIgViLD~V~ 236 (628)
T COG0296 208 SRYGTPE-DFKALVDAAHQAGIGVILDWVP 236 (628)
T ss_pred ccCCCHH-HHHHHHHHHHHcCCEEEEEecC
Confidence 4678888 8999999999999999999874
No 443
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=37.08 E-value=33 Score=30.68 Aligned_cols=47 Identities=9% Similarity=0.111 Sum_probs=30.6
Q ss_pred CCC-CHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEE
Q psy7357 115 GTI-DFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVY 166 (302)
Q Consensus 115 g~i-D~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~lli 166 (302)
|.+ |.++|++.+.+ .++.+|+=.. .|+-... -+-+.+.|++.|+..+
T Consensus 49 G~l~~~~~l~~~l~~--~~i~~VIDAT-HPfA~~i--s~~a~~ac~~~~ipyi 96 (248)
T PRK08057 49 GGFGGAEGLAAYLRE--EGIDLVIDAT-HPYAAQI--SANAAAACRALGIPYL 96 (248)
T ss_pred CCCCCHHHHHHHHHH--CCCCEEEECC-CccHHHH--HHHHHHHHHHhCCcEE
Confidence 667 99999999985 3455555332 3433221 2456788889998875
No 444
>PRK10785 maltodextrin glucosidase; Provisional
Probab=37.06 E-value=27 Score=35.45 Aligned_cols=26 Identities=19% Similarity=0.310 Sum_probs=23.4
Q ss_pred ceeccccHHHHHHHHHHhCCEEEEecC
Q psy7357 144 FGVFEENITDVCELIHEHGGQVYLDGA 170 (302)
Q Consensus 144 ~G~~~~di~~I~~ia~~~g~llivD~a 170 (302)
+|..+ |++++++.||++|+.||+|.+
T Consensus 222 ~Gt~~-df~~Lv~~aH~rGikVilD~V 247 (598)
T PRK10785 222 LGGDA-ALLRLRHATQQRGMRLVLDGV 247 (598)
T ss_pred cCCHH-HHHHHHHHHHHCCCEEEEEEC
Confidence 46667 899999999999999999986
No 445
>COG2004 RPS24A Ribosomal protein S24E [Translation, ribosomal structure and biogenesis]
Probab=36.96 E-value=29 Score=26.83 Aligned_cols=38 Identities=18% Similarity=0.114 Sum_probs=28.0
Q ss_pred ccCCcCC--ccCCCCCCCcccccHHHHHHHHHHHHHHHhCCCeeeEe
Q psy7357 11 PCSFPQL--TNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQ 55 (302)
Q Consensus 11 ~~~~~~f--t~~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~~~~~ 55 (302)
++.|.|+ .-+||-.| .....+++++|++++|++...++
T Consensus 14 LL~RkEi~~~v~h~g~~-------TPSr~evrekla~~l~~d~e~Vv 53 (107)
T COG2004 14 LLKRKEIVFVVYHEGSP-------TPSRKEVREKLAAMLGADKELVV 53 (107)
T ss_pred cccceEEEEEEEeCCCC-------CCCHHHHHHHHHHHHCCCcceEE
Confidence 5666776 77888644 24578999999999999876444
No 446
>KOG4589|consensus
Probab=36.85 E-value=2.4e+02 Score=24.45 Aligned_cols=44 Identities=14% Similarity=0.074 Sum_probs=30.4
Q ss_pred CCHHHHHHHHhccCCCeEEEEEec--CCCceeccccHHHHHHHHHH
Q psy7357 117 IDFSDLETKVKKNKETLSCLMITY--PSTFGVFEENITDVCELIHE 160 (302)
Q Consensus 117 iD~~~l~~~i~~~~~~t~~V~i~~--Pn~~G~~~~di~~I~~ia~~ 160 (302)
.|++...+..+..+.+..=+++.. ||.||+-.-|-..+.++|.+
T Consensus 120 tdp~~~~ki~e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s 165 (232)
T KOG4589|consen 120 TDPETYRKIFEALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDS 165 (232)
T ss_pred CCHHHHHHHHHhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHH
Confidence 577766666654434555566665 89999864378889999976
No 447
>KOG3974|consensus
Probab=36.80 E-value=2.4e+02 Score=25.67 Aligned_cols=48 Identities=13% Similarity=0.225 Sum_probs=34.3
Q ss_pred CHHHHHHHHhccCCCeEEEEEecC--CCceeccccHHHHHHHHHHhCCEEEEecC
Q psy7357 118 DFSDLETKVKKNKETLSCLMITYP--STFGVFEENITDVCELIHEHGGQVYLDGA 170 (302)
Q Consensus 118 D~~~l~~~i~~~~~~t~~V~i~~P--n~~G~~~~di~~I~~ia~~~g~llivD~a 170 (302)
+.+.+++.+. +.-+|++... -.-.+.. .+++|-+.+++.++++++|+-
T Consensus 91 av~~i~k~L~----RlhavVIGPGLGRdp~~~k-~i~~iley~~~~dvP~VIDaD 140 (306)
T KOG3974|consen 91 AVDIIEKLLQ----RLHAVVIGPGLGRDPAILK-EIAKILEYLRGKDVPLVIDAD 140 (306)
T ss_pred hHhHHHHHHh----heeEEEECCCCCCCHHHHH-HHHHHHHHHhcCCCcEEEcCC
Confidence 5666777664 6777777642 1223445 689999999999999999974
No 448
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=36.77 E-value=99 Score=27.61 Aligned_cols=79 Identities=13% Similarity=0.117 Sum_probs=44.7
Q ss_pred CCCEEEEcCCCCcccHHHHHhCCCEEEEee----c-CCCCCCCHHHHHHHHhccCC-CeEEEEEecCCCceeccccHHHH
Q psy7357 81 HRNVCLIPVSAHGTNPASAQMAGMSVEPVS----V-RKDGTIDFSDLETKVKKNKE-TLSCLMITYPSTFGVFEENITDV 154 (302)
Q Consensus 81 ~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~----~-~~~g~iD~~~l~~~i~~~~~-~t~~V~i~~Pn~~G~~~~di~~I 154 (302)
++..+++. |+.....++.+|++++.+. . ..+....+.+|.++++.-++ ++++|+. +|.... . .++.+
T Consensus 152 ~~~~~v~~---H~af~Y~~~~yGl~~~~~~~~~~~~~~~~~ps~~~l~~l~~~ik~~~v~~if~-e~~~~~--k-~~~~l 224 (264)
T cd01020 152 KGAPVAAT---EPVFDYLLDALGMKERTPKGYTATTESETEPSPADIAAFQNAIKNRQIDALIV-NPQQAS--S-ATTNI 224 (264)
T ss_pred CCCeEEEe---CchHHHHHHHCCCcccCHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCCCEEEe-CCCCCc--H-HHHHH
Confidence 34455654 6666778889999876431 1 12445556555555543223 4555554 444211 1 24567
Q ss_pred HHHHHHhCCEEE
Q psy7357 155 CELIHEHGGQVY 166 (302)
Q Consensus 155 ~~ia~~~g~lli 166 (302)
.+++++.|+.++
T Consensus 225 ~~la~~~~~~v~ 236 (264)
T cd01020 225 TGLAKRSGVPVV 236 (264)
T ss_pred HHHHHHcCCCEE
Confidence 678899998763
No 449
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=36.74 E-value=1.6e+02 Score=25.57 Aligned_cols=59 Identities=10% Similarity=0.098 Sum_probs=26.0
Q ss_pred HHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEE
Q psy7357 99 AQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVY 166 (302)
Q Consensus 99 ~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~lli 166 (302)
++..|+++.....+.+.....+.++.+++ .+..+|++...+. +.+.+.+.+++.|+.++
T Consensus 25 a~~~g~~~~~~~~~~~~~~~~~~i~~l~~---~~vdgii~~~~~~------~~~~~~~~~~~~~ipvV 83 (269)
T cd06281 25 LRAAGYSLLIANSLNDPERELEILRSFEQ---RRMDGIIIAPGDE------RDPELVDALASLDLPIV 83 (269)
T ss_pred HHHcCCEEEEEeCCCChHHHHHHHHHHHH---cCCCEEEEecCCC------CcHHHHHHHHhCCCCEE
Confidence 44567776655432211111223333333 3556666643211 22344455566665543
No 450
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=36.59 E-value=3e+02 Score=24.33 Aligned_cols=69 Identities=10% Similarity=0.105 Sum_probs=44.1
Q ss_pred HHHhCCCEEEEee-cC--CC---CCCCHHHHHHHHhcc-CCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecC
Q psy7357 98 SAQMAGMSVEPVS-VR--KD---GTIDFSDLETKVKKN-KETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGA 170 (302)
Q Consensus 98 ~~~~~g~~v~~i~-~~--~~---g~iD~~~l~~~i~~~-~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a 170 (302)
+.+..|++|+.+. ++ .+ +.+|++.+.+++.+. .++..+|++.-.|-. . +.-|.++=++.|.+| +++.
T Consensus 140 ~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAifisCTnLr-t----~~vi~~lE~~lGkPV-lsSN 213 (239)
T TIGR02990 140 YFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADALFLSCTALR-A----ATCAQRIEQAIGKPV-VTSN 213 (239)
T ss_pred HHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEEEEeCCCch-h----HHHHHHHHHHHCCCE-EEHH
Confidence 4567899998873 22 22 368999999998643 356777887653421 1 334444546789998 5765
Q ss_pred Cc
Q psy7357 171 NM 172 (302)
Q Consensus 171 ~~ 172 (302)
+.
T Consensus 214 qa 215 (239)
T TIGR02990 214 QA 215 (239)
T ss_pred HH
Confidence 53
No 451
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=36.23 E-value=95 Score=26.22 Aligned_cols=44 Identities=20% Similarity=0.353 Sum_probs=32.9
Q ss_pred CHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCE--EEEec
Q psy7357 118 DFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQ--VYLDG 169 (302)
Q Consensus 118 D~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~l--livD~ 169 (302)
|..+++++++ .+...+++-. |.+- +++++.+.++++|-. +++|-
T Consensus 12 ~~~~le~~le---s~~~~vflL~----~~i~-~ik~ivk~lK~~gK~vfiHvDL 57 (181)
T COG1954 12 DNKDLEKALE---SESQYVFLLT----GHIL-NIKEIVKKLKNRGKTVFIHVDL 57 (181)
T ss_pred hHHHHHHHhc---CCCeEEEEEe----chhh-hHHHHHHHHHhCCcEEEEEeHH
Confidence 6788999998 5666666655 5565 799999999998765 45553
No 452
>PF03497 Anthrax_toxA: Anthrax toxin LF subunit; InterPro: IPR005165 Anthrax toxin is a plasmid-encoded toxin complex produced by the Gram-positive, spore-forming bacteria, Bacillus anthracis. The toxin consists of three non-toxic proteins: the protective antigen (PA), the lethal factor (LF) and the edema factor (EF) []. These component proteins self-assemble at the surface of host cell receptors, yielding a series of toxic complexes that can produce shock-like symptoms and death. Anthrax toxin is one of a large group of Bacillus and Clostridium exotoxins referred to as binary toxins, forming independent enzymatic (A moiety) and binding (B moiety) components. The LF and EF proteins are the enzymes (A moiety) that act on cytosolic substrates, while PA is a multi-functional protein (B moiety) that binds to cell surface receptors, mediates the assembly and internalisation of the complexes, and delivers them to the host cell endosome []. Once PA is attached to the host receptor [], it must then be cleaved by a host cell surface (furin family) protease before it is able to bind EF and LF. The cleavage of the N terminus of PA enables the C-terminal fragment to self-associate into a ring-shaped heptameric complex (prepore) that can bind LF or EF competitively. The PA-LF/EF complex is then internalised by endocytosis, and delivered to the endosome, where PA forms a pore in the endosomal membrane in order to translocate LF and EF to the cytosol. LF is a Zn-dependent metalloprotease that cleaves and inactivates mitogen-activated protein (MAP) kinases, kills macrophages, and causes death of the host by inhibiting cell proliferation [, ]. EF is a calcium-and calmodulin-dependent adenylyl cyclase that can cause edema (fluid-filled swelling) when associated with PA. EF is not toxic by itself, and is required for the survival of germinated Bacillus spores within macrophages at the early stages of infection. EF dramatically elevates the level of host intracellular cAMP, a ubiquitous messenger that integrates many processes of the cell; increases in cAMP can interfere with host intracellular signalling []. This entry represents a central domain in the edema factor adenylyl cyclase protein of anthrax toxin, as well as in adenylyl cylcases from other bacterial toxins.; GO: 0008294 calcium- and calmodulin-responsive adenylate cyclase activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2COL_A 1YRT_A 1YRU_A 1ZOT_A 1S26_C 1XFY_F 1XFX_C 1Y0V_A 1SK6_C 1XFW_C ....
Probab=36.23 E-value=25 Score=29.84 Aligned_cols=65 Identities=17% Similarity=0.163 Sum_probs=38.2
Q ss_pred ceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcEEEeCCCcccC---CCCCCCCCcceeEEEeCCCCC
Q psy7357 144 FGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFC---IPHGGGGPGMGPIGVKSHLAP 219 (302)
Q Consensus 144 ~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDiv~~~~hK~l~---~p~~~gGp~~G~l~~~~~l~~ 219 (302)
.|+...+.+.+.++|.+.|..+.+=.++..+...+.. |. . .|.|. ++-.+ ||..|||.+.+.+.+
T Consensus 13 ~Gi~~~h~~~~~~vA~e~n~iI~iRpV~~~st~LI~~----G~--~----tKgl~vkgKSsdW-GP~AGfIpvdq~~SK 80 (179)
T PF03497_consen 13 SGIPPEHAEAFQQVANEENTIIGIRPVNKLSTSLIES----GY--A----TKGLHVKGKSSDW-GPQAGFIPVDQRFSK 80 (179)
T ss_dssp CTS-HHHHHHHHHHHHHCTEEEEEE---HHHHHHHHC----T---E----E--TT--S--BSS-CCCTTS-BSSCCGST
T ss_pred cCCCHHHHHHHHHHHHHcCeEEEEEeCCcchHHHHhc----CC--C----CCCcccccccCCC-CCccceeecChhhhc
Confidence 4776557999999999999998877666544443311 11 1 23332 12223 699999999988887
No 453
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=36.05 E-value=98 Score=28.57 Aligned_cols=68 Identities=13% Similarity=0.072 Sum_probs=37.4
Q ss_pred eEeeCchHHHHH-HHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEEeecCCCCC-CCHHHHHHHHhc
Q psy7357 53 SFQPNSGAQGEY-AGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGT-IDFSDLETKVKK 128 (302)
Q Consensus 53 ~~~~~~Ga~a~~-a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~i~~~~~g~-iD~~~l~~~i~~ 128 (302)
.+-++||.++.- |.+.+++ .-+-++++|+..-.......+.+|.+++.+|..+... --.+.+++...+
T Consensus 65 IVE~TSGNTGI~LA~vaa~~--------Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~~~g~~~~a~~~a~el~~~ 134 (300)
T COG0031 65 IVEATSGNTGIALAMVAAAK--------GYRLIIVMPETMSQERRKLLRALGAEVILTPGAPGNMKGAIERAKELAAE 134 (300)
T ss_pred EEEcCCChHHHHHHHHHHHc--------CCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCCCCCchHHHHHHHHHHHHh
Confidence 445677776541 3333333 2345666766543334557789999999999733211 123444445553
No 454
>TIGR00550 nadA quinolinate synthetase complex, A subunit. This protein, termed NadA, plays a role in the synthesis of pyridine, a precursor to NAD. The quinolinate synthetase complex consists of A protein (this protein) and B protein. B protein converts L-aspartate to iminoaspartate, an unstable reaction product which in the absence of A protein is spontaneously hydrolyzed to form oxaloacetate. The A protein, NadA, converts iminoaspartate to quinolate.
Probab=34.96 E-value=1.8e+02 Score=26.92 Aligned_cols=36 Identities=8% Similarity=0.134 Sum_probs=23.6
Q ss_pred EEEEeecCCCC------CCCHHHHHHHHhccCCCeEEEEEecCCCc
Q psy7357 105 SVEPVSVRKDG------TIDFSDLETKVKKNKETLSCLMITYPSTF 144 (302)
Q Consensus 105 ~v~~i~~~~~g------~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~ 144 (302)
+-+.+| +++| .++.++++++-+++ | .++++++||..
T Consensus 75 k~vilp-~~~a~C~~a~~~~~~~i~~lk~~~-P--da~vvah~n~~ 116 (310)
T TIGR00550 75 KTVLMP-DLGAGCSMADMCPPEEFKKLKERH-P--DAFVVTYVNTT 116 (310)
T ss_pred CEEEcc-CCCCCCccccccCHHHHHHHHHHC-C--CCEEEEECCCC
Confidence 445566 3433 47899998877654 3 34678998853
No 455
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=34.68 E-value=4.3e+02 Score=25.58 Aligned_cols=117 Identities=11% Similarity=0.077 Sum_probs=55.8
Q ss_pred cHHHHHHHHHHHHHHHhC-CCe-eeEeeCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHHHHHhCCCEEEE
Q psy7357 31 GYEQLIGELETDLCEITG-YDK-ISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEP 108 (302)
Q Consensus 31 G~l~~~~e~~~~l~~l~g-~~~-~~~~~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~~~~~~g~~v~~ 108 (302)
|.-..-....+...+.+| ... ..+..+.|..++.++ ..+.. ..-.+|.|.+-.+-.-...++..|.++
T Consensus 157 ~~VSi~saAv~lA~~~~~~L~~~~vlvIGAGem~~lva-~~L~~-------~g~~~i~IaNRT~erA~~La~~~~~~~-- 226 (414)
T COG0373 157 GAVSISSAAVELAKRIFGSLKDKKVLVIGAGEMGELVA-KHLAE-------KGVKKITIANRTLERAEELAKKLGAEA-- 226 (414)
T ss_pred CccchHHHHHHHHHHHhcccccCeEEEEcccHHHHHHH-HHHHh-------CCCCEEEEEcCCHHHHHHHHHHhCCee--
Confidence 333344455556667777 443 344566665544221 12220 122455555443211122455555332
Q ss_pred eecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEecCC
Q psy7357 109 VSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGAN 171 (302)
Q Consensus 109 i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~a~ 171 (302)
+.++++.+.+.+ ...|+.+...+.-++. -..+.+..+...-++++|-+.
T Consensus 227 --------~~l~el~~~l~~----~DvVissTsa~~~ii~--~~~ve~a~~~r~~~livDiav 275 (414)
T COG0373 227 --------VALEELLEALAE----ADVVISSTSAPHPIIT--REMVERALKIRKRLLIVDIAV 275 (414)
T ss_pred --------ecHHHHHHhhhh----CCEEEEecCCCccccC--HHHHHHHHhcccCeEEEEecC
Confidence 346777778762 2335555434444553 344444444322288899653
No 456
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=34.26 E-value=1.4e+02 Score=23.82 Aligned_cols=17 Identities=29% Similarity=0.302 Sum_probs=14.9
Q ss_pred cHHHHHHHHHHhCCEEE
Q psy7357 150 NITDVCELIHEHGGQVY 166 (302)
Q Consensus 150 di~~I~~ia~~~g~lli 166 (302)
-+.++.+.||+.|+.++
T Consensus 45 llge~v~a~h~~Girv~ 61 (132)
T PF14871_consen 45 LLGEQVEACHERGIRVP 61 (132)
T ss_pred HHHHHHHHHHHCCCEEE
Confidence 46999999999999875
No 457
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=33.74 E-value=83 Score=29.82 Aligned_cols=72 Identities=11% Similarity=0.173 Sum_probs=45.4
Q ss_pred CCCCHHHHHHHHhccCCCeEEEEEecCC---CceeccccHHHHHHHHHHhCCEEEEecCCcccccccCCCCccCCcEEEe
Q psy7357 115 GTIDFSDLETKVKKNKETLSCLMITYPS---TFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDVSHL 191 (302)
Q Consensus 115 g~iD~~~l~~~i~~~~~~t~~V~i~~Pn---~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~~~p~~~gaDiv~~ 191 (302)
|.++.++.+++++ -...+|+++|-. ..+... ++..+.++++..+..+++|+---.+. .+...-.+|+|.|..
T Consensus 243 gV~~~eda~~a~~---~G~d~I~VSnhGGrqld~~~~-~~~~L~ei~~~~~~~vi~dGGIr~g~-Dv~KALaLGA~aV~i 317 (361)
T cd04736 243 GIVTAEDAKRCIE---LGADGVILSNHGGRQLDDAIA-PIEALAEIVAATYKPVLIDSGIRRGS-DIVKALALGANAVLL 317 (361)
T ss_pred cCCCHHHHHHHHH---CCcCEEEECCCCcCCCcCCcc-HHHHHHHHHHHhCCeEEEeCCCCCHH-HHHHHHHcCCCEEEE
Confidence 4578888888887 567778887632 223333 58888888888889999996311111 111223467777766
No 458
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=33.62 E-value=2.2e+02 Score=21.93 Aligned_cols=63 Identities=8% Similarity=0.125 Sum_probs=38.7
Q ss_pred HHHHh-CCCEEEEeecCC-CCCCCHHHHHHHHhccCCCeEEEEEecCCCce---eccccHHHHHHHHHHhCCEEE
Q psy7357 97 ASAQM-AGMSVEPVSVRK-DGTIDFSDLETKVKKNKETLSCLMITYPSTFG---VFEENITDVCELIHEHGGQVY 166 (302)
Q Consensus 97 ~~~~~-~g~~v~~i~~~~-~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G---~~~~di~~I~~ia~~~g~lli 166 (302)
.+.+. .|+++..++..+ +|. ..+.+.|.+ .+..+|+-+ |++.| ... |...|++.|-+++++++
T Consensus 38 ~~L~~~~Gi~v~~vk~~~~~g~---~~i~~~i~~--g~i~~VInt-~~~~~~~~~~~-dg~~iRr~a~~~~Ip~~ 105 (115)
T cd01422 38 LLIQEATGLTVNRMKSGPLGGD---QQIGALIAE--GEIDAVIFF-RDPLTAQPHEP-DVKALLRLCDVYNIPLA 105 (115)
T ss_pred HHHHHhhCCcEEEEecCCCCch---hHHHHHHHc--CceeEEEEc-CCCCCCCcccc-cHHHHHHHHHHcCCCEE
Confidence 34444 677777775422 333 446666663 455555443 45322 244 79999999999999985
No 459
>PRK12313 glycogen branching enzyme; Provisional
Probab=33.52 E-value=33 Score=35.04 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=23.4
Q ss_pred ceeccccHHHHHHHHHHhCCEEEEecC
Q psy7357 144 FGVFEENITDVCELIHEHGGQVYLDGA 170 (302)
Q Consensus 144 ~G~~~~di~~I~~ia~~~g~llivD~a 170 (302)
+|..+ |++++.+.||++|+.||+|.+
T Consensus 216 ~Gt~~-d~k~lv~~~H~~Gi~VilD~V 241 (633)
T PRK12313 216 YGTPE-DFMYLVDALHQNGIGVILDWV 241 (633)
T ss_pred CCCHH-HHHHHHHHHHHCCCEEEEEEC
Confidence 56666 799999999999999999976
No 460
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=33.17 E-value=33 Score=34.31 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=24.1
Q ss_pred CceeccccHHHHHHHHHHhCCEEEEecC
Q psy7357 143 TFGVFEENITDVCELIHEHGGQVYLDGA 170 (302)
Q Consensus 143 ~~G~~~~di~~I~~ia~~~g~llivD~a 170 (302)
.+|..+ +++++.+.||++|+.||+|.+
T Consensus 155 ~~G~~~-e~k~lV~~aH~~Gi~VilD~V 181 (542)
T TIGR02402 155 AYGGPD-DLKALVDAAHGLGLGVILDVV 181 (542)
T ss_pred ccCCHH-HHHHHHHHHHHCCCEEEEEEc
Confidence 467777 799999999999999999976
No 461
>PF04002 RadC: RadC-like JAB domain; InterPro: IPR001405 This family was named initially with reference to the Escherichia coli radC102 mutation which suggested that RadC was involved in repair of DNA lesions []. However the relevant mutation has subsequently been shown to be in recG, not radC []. In addition all attempts to characterise a radiation-related function for RadC in Streptococcus pneumoniae failed, suggesting that it is not involved in repair of DNA lesions, in recombination during transformation, in gene conversion, nor in mismatch repair [].; PDB: 2QLC_A.
Probab=33.07 E-value=84 Score=24.66 Aligned_cols=49 Identities=16% Similarity=0.215 Sum_probs=26.8
Q ss_pred CCCHHHH-HHHHhccCCCeEEEEEecCCCceeccc---cH---HHHHHHHHHhCCEEEEe
Q psy7357 116 TIDFSDL-ETKVKKNKETLSCLMITYPSTFGVFEE---NI---TDVCELIHEHGGQVYLD 168 (302)
Q Consensus 116 ~iD~~~l-~~~i~~~~~~t~~V~i~~Pn~~G~~~~---di---~~I~~ia~~~g~llivD 168 (302)
.+|+.++ ++++. .+..+|++.+-.|.|...| |+ +.+.+.++--|+.+ +|
T Consensus 50 ~v~~R~I~~~al~---~~A~~vIl~HNHPsG~~~PS~~D~~~T~~L~~~~~~l~I~l-lD 105 (123)
T PF04002_consen 50 PVDPREIFRRALR---LNASSVILAHNHPSGDPEPSDADIALTRRLKKAARLLGIEL-LD 105 (123)
T ss_dssp GCSHHHHHHHHHH---TT-SEEEEEEE-TTS--S--HHHHHHHHHHHHHHHHHT-EE-EE
T ss_pred cccHHHHHHHHHh---hCCceEEEEEEcCCCCCCCCHhHHHHHHHHHHHHHHcCCee-ee
Confidence 4677654 55666 3444455444124455432 55 78888888889988 47
No 462
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=32.62 E-value=35 Score=34.26 Aligned_cols=27 Identities=19% Similarity=0.457 Sum_probs=24.2
Q ss_pred CceeccccHHHHHHHHHHhCCEEEEecC
Q psy7357 143 TFGVFEENITDVCELIHEHGGQVYLDGA 170 (302)
Q Consensus 143 ~~G~~~~di~~I~~ia~~~g~llivD~a 170 (302)
.+|..+ |++++.+.||++|+.|++|.+
T Consensus 76 ~~Gt~~-d~~~lv~~~h~~gi~vilD~V 102 (551)
T PRK10933 76 TYGTLD-DFDELVAQAKSRGIRIILDMV 102 (551)
T ss_pred ccCCHH-HHHHHHHHHHHCCCEEEEEEC
Confidence 358888 899999999999999999976
No 463
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=32.37 E-value=1.9e+02 Score=22.72 Aligned_cols=68 Identities=15% Similarity=0.230 Sum_probs=39.3
Q ss_pred HHHhCCCEEEEeecCC--CC----CCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEE
Q psy7357 98 SAQMAGMSVEPVSVRK--DG----TIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYL 167 (302)
Q Consensus 98 ~~~~~g~~v~~i~~~~--~g----~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~lliv 167 (302)
++...|++++.+-.|. .| ...+..|.+.+.+ .+...|++...+-.+.-..++..+.+.++++|+.+++
T Consensus 27 ~a~~~g~~i~~~~~d~~~Sg~~~~Rp~l~~ll~~~~~--g~~~~ivv~~~~Rl~R~~~~~~~~~~~l~~~gi~l~~ 100 (148)
T smart00857 27 YAKANGWEVVRIYEDEGVSGKKADRPGLQRLLADLRA--GDIDVLVVYKLDRLGRSLRDLLALLELLEKKGVRLVS 100 (148)
T ss_pred HHHHCCCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHc--CCCCEEEEeccchhhCcHHHHHHHHHHHHHCCCEEEE
Confidence 3445566665544332 22 2345555555542 3445688887764444322577788888899988864
No 464
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=32.03 E-value=36 Score=34.06 Aligned_cols=26 Identities=15% Similarity=0.353 Sum_probs=23.8
Q ss_pred ceeccccHHHHHHHHHHhCCEEEEecC
Q psy7357 144 FGVFEENITDVCELIHEHGGQVYLDGA 170 (302)
Q Consensus 144 ~G~~~~di~~I~~ia~~~g~llivD~a 170 (302)
+|..+ +++++.+.||++|+.||+|.+
T Consensus 71 ~Gt~~-~~~~lv~~ah~~gi~vilD~v 96 (543)
T TIGR02403 71 FGTMA-DFEELVSEAKKRNIKIMLDMV 96 (543)
T ss_pred cCCHH-HHHHHHHHHHHCCCEEEEEEC
Confidence 58888 899999999999999999975
No 465
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=31.82 E-value=2.2e+02 Score=22.64 Aligned_cols=50 Identities=4% Similarity=-0.083 Sum_probs=26.0
Q ss_pred HHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHh-CCEEEEec
Q psy7357 119 FSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEH-GGQVYLDG 169 (302)
Q Consensus 119 ~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~-g~llivD~ 169 (302)
.+.|++.++..+++.+.++++.|.+......--+.+.++|+++ ++.+ +|-
T Consensus 66 ~~nl~~ii~~~~~~~~ivlv~~~~~~~~~~~~n~~~~~~a~~~~~v~~-id~ 116 (150)
T cd01840 66 KDQLDELLDALGPDRQVYLVNPHVPRPWEPDVNAYLLDAAKKYKNVTI-IDW 116 (150)
T ss_pred HHHHHHHHHHcCCCCEEEEEECCCCcchHHHHHHHHHHHHHHCCCcEE-ecH
Confidence 4555666654435455444444333222221124567788888 6666 573
No 466
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=31.53 E-value=3.2e+02 Score=24.89 Aligned_cols=48 Identities=10% Similarity=0.009 Sum_probs=27.5
Q ss_pred CCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEe
Q psy7357 117 IDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLD 168 (302)
Q Consensus 117 iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD 168 (302)
.+++++++.++ ....-++.-.|+..|-+. +..+++++|+++|+.++.-
T Consensus 238 ~~~~~~~~~~~---~~~~d~v~~~~~~~GGi~-~~~~~~~~a~~~gi~~~~~ 285 (316)
T cd03319 238 FSAADAARLAG---GGAYDGINIKLMKTGGLT-EALRIADLARAAGLKVMVG 285 (316)
T ss_pred CCHHHHHHHHh---cCCCCEEEEeccccCCHH-HHHHHHHHHHHcCCCEEEE
Confidence 35566666665 222223343455555555 4777888888888776543
No 467
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=31.44 E-value=2.2e+02 Score=26.47 Aligned_cols=67 Identities=12% Similarity=0.121 Sum_probs=37.2
Q ss_pred CCCcccHHHHHh--CCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHH-HhCCEEE
Q psy7357 90 SAHGTNPASAQM--AGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIH-EHGGQVY 166 (302)
Q Consensus 90 ~~hg~~~~~~~~--~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~-~~g~lli 166 (302)
+.|.+.....+. .+..++.+|.. .-++.++++++ ..++++++... |+-+.|..++.++++ ++|+.++
T Consensus 75 pvy~sv~ea~~~~~~D~avI~VPa~----~v~dai~Ea~~---aGI~~~Viite---Gfpe~d~~~l~~~~~~~~g~rli 144 (317)
T PTZ00187 75 PVFATVKEAKKATGADASVIYVPPP----HAASAIIEAIE---AEIPLVVCITE---GIPQHDMVKVKHALLSQNKTRLI 144 (317)
T ss_pred cccCCHHHHhcccCCCEEEEecCHH----HHHHHHHHHHH---cCCCEEEEECC---CCchhhHHHHHHHHhhcCCCEEE
Confidence 444444444444 34556666642 34678888887 55555554431 333325566666665 4788774
No 468
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=31.10 E-value=53 Score=25.99 Aligned_cols=47 Identities=17% Similarity=0.306 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHhcc-CCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEe
Q psy7357 116 TIDFSDLETKVKKN-KETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLD 168 (302)
Q Consensus 116 ~iD~~~l~~~i~~~-~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD 168 (302)
.+|.+.-++.+++- ..++.||+++. |. + +-+++.++|+++++.++.-
T Consensus 64 ~l~~~~r~~~l~~l~~~~~P~iIvt~----~~-~-~p~~l~e~a~~~~ipll~t 111 (127)
T PF02603_consen 64 SLDEEERKERLEKLFSYNPPCIIVTR----GL-E-PPPELIELAEKYNIPLLRT 111 (127)
T ss_dssp CS-HHHHCCHHHHHCTTT-S-EEEET----TT-----HHHHHHHHHCT--EEEE
T ss_pred HCCHHHHHHHHHHHhCCCCCEEEEEC----cC-C-CCHHHHHHHHHhCCcEEEc
Confidence 45655544444321 16788899988 33 2 4679999999999998644
No 469
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=31.00 E-value=1.6e+02 Score=25.36 Aligned_cols=62 Identities=11% Similarity=0.151 Sum_probs=30.5
Q ss_pred HHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEE-Ee
Q psy7357 99 AQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVY-LD 168 (302)
Q Consensus 99 ~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~lli-vD 168 (302)
++..|+++.......+-..-.+.++..+. .++.+|++..++.. ...++.+.+++.|+.++ +|
T Consensus 25 ~~~~g~~~~~~~~~~~~~~~~~~l~~~~~---~~vdgii~~~~~~~-----~~~~~i~~~~~~~ipvV~~~ 87 (273)
T cd06305 25 AEALGGDLRVYDAGGDDAKQADQIDQAIA---QKVDAIIIQHGRAE-----VLKPWVKRALDAGIPVVAFD 87 (273)
T ss_pred HHHcCCEEEEECCCCCHHHHHHHHHHHHH---cCCCEEEEecCChh-----hhHHHHHHHHHcCCCEEEec
Confidence 45677877766532111111234444555 45677777654321 12233344566776543 44
No 470
>KOG3424|consensus
Probab=30.74 E-value=60 Score=25.56 Aligned_cols=38 Identities=16% Similarity=0.097 Sum_probs=29.1
Q ss_pred cccCCcCC--ccCCCCCCCcccccHHHHHHHHHHHHHHHhCCCeeeE
Q psy7357 10 IPCSFPQL--TNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISF 54 (302)
Q Consensus 10 ~~~~~~~f--t~~~py~p~e~sqG~l~~~~e~~~~l~~l~g~~~~~~ 54 (302)
.+++|.++ ..+||--| .+| -.|+++.|++++..+.+++
T Consensus 16 rLL~RKqmvvdvlHPG~a-~vs------K~EirEKla~mYkt~~d~V 55 (132)
T KOG3424|consen 16 RLLSRKQMVVDVLHPGKA-NVS------KTEIREKLAKMYKTTPDAV 55 (132)
T ss_pred hhhhhhheeEEEecCCCC-CCC------HHHHHHHHHHHhcCCcceE
Confidence 47788888 78999877 444 4689999999998876543
No 471
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=30.24 E-value=1.2e+02 Score=27.28 Aligned_cols=86 Identities=13% Similarity=0.021 Sum_probs=49.7
Q ss_pred CCCC-CHHHHHHHHhccC--CCeEEEEEec-CCCc-e--eccccHHHHHHHHHHhCCEEEEecCCccccccc-----CCC
Q psy7357 114 DGTI-DFSDLETKVKKNK--ETLSCLMITY-PSTF-G--VFEENITDVCELIHEHGGQVYLDGANMNAQVGL-----CRP 181 (302)
Q Consensus 114 ~g~i-D~~~l~~~i~~~~--~~t~~V~i~~-Pn~~-G--~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~-----~~p 181 (302)
.|.. ++++++.+++... -+...+++.- -+++ + ....|++.|..+.+..+..+++|..|..+.-.+ ...
T Consensus 139 ~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~~pV~~ds~Hs~G~r~~~~~~~~aA 218 (260)
T TIGR01361 139 RGMGNTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKETHLPIIVDPSHAAGRRDLVIPLAKAA 218 (260)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhhCCCEEEcCCCCCCccchHHHHHHHH
Confidence 3544 7888888875321 1122233221 1222 3 223389999988877899999998775441111 112
Q ss_pred CccCCcEEEeCCCcccCC
Q psy7357 182 GDYGSDVSHLNLHKTFCI 199 (302)
Q Consensus 182 ~~~gaDiv~~~~hK~l~~ 199 (302)
...|+|-++.+.|=++..
T Consensus 219 va~Ga~gl~iE~H~t~d~ 236 (260)
T TIGR01361 219 IAAGADGLMIEVHPDPEK 236 (260)
T ss_pred HHcCCCEEEEEeCCCccc
Confidence 357889777777766553
No 472
>PLN00191 enolase
Probab=30.18 E-value=3.4e+02 Score=26.61 Aligned_cols=83 Identities=7% Similarity=0.027 Sum_probs=51.6
Q ss_pred CCEEEEcCCCCcccHH-HHHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHH
Q psy7357 82 RNVCLIPVSAHGTNPA-SAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHE 160 (302)
Q Consensus 82 ~d~Vlv~~~~hg~~~~-~~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~ 160 (302)
-+.+.+-+|.+..... ..+...-.-+.+-.|+....+++++++.++ .+.+=++.--+|-.|.+. +..+++++|++
T Consensus 311 y~I~~IEDPl~~~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~---~~aad~i~iKl~qiGGIT-ea~~~a~lA~~ 386 (457)
T PLN00191 311 YPIVSIEDPFDQDDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQ---EKACNALLLKVNQIGTVT-ESIEAVKMSKA 386 (457)
T ss_pred CCcEEEECCCCcccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHH---hCCCCEEEecccccCCHH-HHHHHHHHHHH
Confidence 3456777776544433 333222111112223333467999999998 444445555667778887 69999999999
Q ss_pred hCCEEEEe
Q psy7357 161 HGGQVYLD 168 (302)
Q Consensus 161 ~g~llivD 168 (302)
+|..+++-
T Consensus 387 ~G~~~~is 394 (457)
T PLN00191 387 AGWGVMTS 394 (457)
T ss_pred CCCEEEeC
Confidence 99998753
No 473
>PRK09505 malS alpha-amylase; Reviewed
Probab=30.09 E-value=41 Score=34.75 Aligned_cols=26 Identities=15% Similarity=0.367 Sum_probs=23.0
Q ss_pred ceeccccHHHHHHHHHHhCCEEEEecC
Q psy7357 144 FGVFEENITDVCELIHEHGGQVYLDGA 170 (302)
Q Consensus 144 ~G~~~~di~~I~~ia~~~g~llivD~a 170 (302)
+|..+ |++++.+.||++|+.||+|.+
T Consensus 288 ~Gt~~-dfk~Lv~~aH~~Gi~VilD~V 313 (683)
T PRK09505 288 MGTEA-DLRTLVDEAHQRGIRILFDVV 313 (683)
T ss_pred CCCHH-HHHHHHHHHHHCCCEEEEEEC
Confidence 46666 799999999999999999976
No 474
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=29.82 E-value=3.5e+02 Score=23.92 Aligned_cols=48 Identities=10% Similarity=0.026 Sum_probs=26.4
Q ss_pred CCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEe
Q psy7357 117 IDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLD 168 (302)
Q Consensus 117 iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD 168 (302)
.++.++++.+++ .... ++.-.|+-.|-+. +..+++++|+++|+.+++-
T Consensus 190 ~~~~~~~~~i~~--~~~d-~v~~k~~~~GGi~-~~~~~~~~A~~~gi~~~~~ 237 (265)
T cd03315 190 FTPHDAFRELAL--GAAD-AVNIKTAKTGGLT-KAQRVLAVAEALGLPVMVG 237 (265)
T ss_pred CCHHHHHHHHHh--CCCC-EEEEecccccCHH-HHHHHHHHHHHcCCcEEec
Confidence 355556665542 1122 2333345455555 4777777777777776543
No 475
>PLN02361 alpha-amylase
Probab=29.75 E-value=42 Score=32.27 Aligned_cols=27 Identities=7% Similarity=0.089 Sum_probs=24.6
Q ss_pred CceeccccHHHHHHHHHHhCCEEEEecC
Q psy7357 143 TFGVFEENITDVCELIHEHGGQVYLDGA 170 (302)
Q Consensus 143 ~~G~~~~di~~I~~ia~~~g~llivD~a 170 (302)
.+|..+ +++++.+.||++|+.+|+|.+
T Consensus 71 ~~Gt~~-el~~li~~~h~~gi~vi~D~V 97 (401)
T PLN02361 71 AYGSEH-LLKSLLRKMKQYNVRAMADIV 97 (401)
T ss_pred ccCCHH-HHHHHHHHHHHcCCEEEEEEc
Confidence 468888 799999999999999999976
No 476
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=29.62 E-value=1.4e+02 Score=26.68 Aligned_cols=57 Identities=21% Similarity=0.245 Sum_probs=35.8
Q ss_pred CCeEEEE-EecC--CCceeccccHHHHHHHHHHhCCEEEEecCCccccccc---CCCCccCCcEEEeCC
Q psy7357 131 ETLSCLM-ITYP--STFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGL---CRPGDYGSDVSHLNL 193 (302)
Q Consensus 131 ~~t~~V~-i~~P--n~~G~~~~di~~I~~ia~~~g~llivD~a~~~~~~~~---~~p~~~gaDiv~~~~ 193 (302)
-..++|| ++.| +..|..+ -.-|.-|..+.++.+|||+- ++.- ....++|+|-|..++
T Consensus 150 ~GcaavMPl~aPIGSg~G~~n--~~~l~iiie~a~VPviVDAG----iG~pSdAa~aMElG~DaVL~NT 212 (262)
T COG2022 150 AGCAAVMPLGAPIGSGLGLQN--PYNLEIIIEEADVPVIVDAG----IGTPSDAAQAMELGADAVLLNT 212 (262)
T ss_pred cCceEeccccccccCCcCcCC--HHHHHHHHHhCCCCEEEeCC----CCChhHHHHHHhcccceeehhh
Confidence 4556676 6667 3456664 44566666677999999952 2211 113478999888773
No 477
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=29.46 E-value=1.6e+02 Score=25.64 Aligned_cols=47 Identities=9% Similarity=0.089 Sum_probs=34.1
Q ss_pred HHHHHHHHhccCCCeEEEEEecCCC-cee-ccccHHHHHHHHHHhCCEEEEec
Q psy7357 119 FSDLETKVKKNKETLSCLMITYPST-FGV-FEENITDVCELIHEHGGQVYLDG 169 (302)
Q Consensus 119 ~~~l~~~i~~~~~~t~~V~i~~Pn~-~G~-~~~di~~I~~ia~~~g~llivD~ 169 (302)
++.++++++ ....+|.+=.-+. .-. .. -.+++.++|+++++.|+++.
T Consensus 24 ~~~ve~al~---~Gv~~vQlR~K~~~~~~~~~-~a~~~~~lc~~~~v~liINd 72 (211)
T COG0352 24 LEWVEAALK---GGVTAVQLREKDLSDEEYLA-LAEKLRALCQKYGVPLIIND 72 (211)
T ss_pred HHHHHHHHh---CCCeEEEEecCCCChHHHHH-HHHHHHHHHHHhCCeEEecC
Confidence 889999998 6666666655442 112 34 46899999999999998774
No 478
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=29.42 E-value=2.6e+02 Score=21.37 Aligned_cols=60 Identities=20% Similarity=0.167 Sum_probs=38.0
Q ss_pred HHHHHHHhCCCeeeEe-eCchHHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcccHH---HHHhCCCEEEEeec
Q psy7357 40 ETDLCEITGYDKISFQ-PNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPA---SAQMAGMSVEPVSV 111 (302)
Q Consensus 40 ~~~l~~l~g~~~~~~~-~~~Ga~a~~a~l~a~~~~~~~~g~~~~d~Vlv~~~~hg~~~~---~~~~~g~~v~~i~~ 111 (302)
-+.+++-||.+..|.. |+-| | +.-..+| +-.++||+-+...+.... .++..|..|+.+|-
T Consensus 25 v~~i~~~~gI~diN~IKPGIg---E-aTRvLLR--------RvP~~vLVr~~~~pd~~Hl~~LA~ekgVpVe~~~d 88 (100)
T PF15608_consen 25 VERIAERYGISDINLIKPGIG---E-ATRVLLR--------RVPWKVLVRDPDDPDLAHLLLLAEEKGVPVEVYPD 88 (100)
T ss_pred HHHHHHHhCCCCcccccCChh---H-HHHHHHh--------cCCCEEEECCCCCccHHHHHHHHHHcCCcEEEeCC
Confidence 3456777899876654 6544 3 3333344 346789998887654433 46678888888773
No 479
>PRK05402 glycogen branching enzyme; Provisional
Probab=29.39 E-value=41 Score=34.94 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=23.5
Q ss_pred ceeccccHHHHHHHHHHhCCEEEEecC
Q psy7357 144 FGVFEENITDVCELIHEHGGQVYLDGA 170 (302)
Q Consensus 144 ~G~~~~di~~I~~ia~~~g~llivD~a 170 (302)
+|..+ |++++.+.||++|+.||+|.+
T Consensus 311 ~Gt~~-dfk~lV~~~H~~Gi~VilD~V 336 (726)
T PRK05402 311 FGTPD-DFRYFVDACHQAGIGVILDWV 336 (726)
T ss_pred cCCHH-HHHHHHHHHHHCCCEEEEEEC
Confidence 57777 799999999999999999976
No 480
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=29.15 E-value=1.3e+02 Score=24.50 Aligned_cols=52 Identities=15% Similarity=0.220 Sum_probs=38.5
Q ss_pred CCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEec
Q psy7357 115 GTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDG 169 (302)
Q Consensus 115 g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~ 169 (302)
..++.+++.+.|.+..+...+|.++... ...+++.++.+.+++.|..+.++.
T Consensus 44 ~~lt~eel~~~I~~~~~~~~gVt~SGGE---l~~~~l~~ll~~lk~~Gl~i~l~T 95 (147)
T TIGR02826 44 TKLTPEYLTKTLDKYRSLISCVLFLGGE---WNREALLSLLKIFKEKGLKTCLYT 95 (147)
T ss_pred cCCCHHHHHHHHHHhCCCCCEEEEechh---cCHHHHHHHHHHHHHCCCCEEEEC
Confidence 3589999999987544445677787744 333368999999999998887775
No 481
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=28.67 E-value=2.4e+02 Score=24.39 Aligned_cols=39 Identities=21% Similarity=0.174 Sum_probs=19.9
Q ss_pred HHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEec
Q psy7357 99 AQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITY 140 (302)
Q Consensus 99 ~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~ 140 (302)
++..|+++.......+.....+.++..++ .++.++++..
T Consensus 25 ~~~~g~~~~~~~~~~~~~~~~~~i~~l~~---~~vdgii~~~ 63 (273)
T cd01541 25 LSEKGYSLLLASTNNDPERERKCLENMLS---QGIDGLIIEP 63 (273)
T ss_pred HHHcCCEEEEEeCCCCHHHHHHHHHHHHH---cCCCEEEEec
Confidence 34567776655442222223445556555 4556666643
No 482
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=28.58 E-value=4e+02 Score=24.66 Aligned_cols=48 Identities=10% Similarity=0.107 Sum_probs=29.5
Q ss_pred CCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEe
Q psy7357 117 IDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLD 168 (302)
Q Consensus 117 iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD 168 (302)
.++++++++++ ....-++---+...|=+. +..+++++|+++|+.+++-
T Consensus 250 ~~~~~~~~~i~---~~~~d~v~~k~~~~GGi~-~~~~i~~~a~~~g~~~~~~ 297 (357)
T cd03316 250 YTRWEFRDLLE---AGAVDIIQPDVTKVGGIT-EAKKIAALAEAHGVRVAPH 297 (357)
T ss_pred ccHHHHHHHHH---hCCCCEEecCccccCCHH-HHHHHHHHHHHcCCeEecc
Confidence 46677777765 222112222345456555 5889999999999887644
No 483
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=28.36 E-value=51 Score=24.94 Aligned_cols=50 Identities=14% Similarity=0.210 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEec
Q psy7357 116 TIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDG 169 (302)
Q Consensus 116 ~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD~ 169 (302)
..++.+++++++ .+..-++-..+...|=+. ...+|+++|+++|+.+.+-+
T Consensus 4 ~~~~~~~~~li~---~~a~d~~~~~~~~~GGit-~~~~i~~~A~~~gi~~~~h~ 53 (111)
T PF13378_consen 4 LFSLHDFRRLIE---AGAVDIVQIDPTRCGGIT-EALRIAALAEAHGIPVMPHS 53 (111)
T ss_dssp SSSHHHHHHHHH---TTSCSEEEEBHHHHTSHH-HHHHHHHHHHHTT-EEEEBS
T ss_pred CCCHHHHHHHHH---cCCCCEEEeCchhcCCHH-HHHHHHHHHHHhCCCEEecC
Confidence 357889999998 333223444445455555 59999999999999987655
No 484
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=28.29 E-value=70 Score=28.31 Aligned_cols=60 Identities=10% Similarity=0.049 Sum_probs=37.3
Q ss_pred CCEEEEcCCCCcccH--HHHHhCCCEEEEeecCCCC-CCCHHHHHHHHhccCCCeEEEEEecCC
Q psy7357 82 RNVCLIPVSAHGTNP--ASAQMAGMSVEPVSVRKDG-TIDFSDLETKVKKNKETLSCLMITYPS 142 (302)
Q Consensus 82 ~d~Vlv~~~~hg~~~--~~~~~~g~~v~~i~~~~~g-~iD~~~l~~~i~~~~~~t~~V~i~~Pn 142 (302)
|.+|+++++...... ...+..|++++.+|+-+-. .-|.+.+.+.+.+. ++...|+++++|
T Consensus 3 g~~vlvTRp~~~~~~l~~~l~~~G~~~~~~P~i~i~p~~~~~~~~~~l~~l-~~~d~iifTS~n 65 (255)
T PRK05752 3 GWRLLLTRPAEECAALAASLAEAGIFSSSLPLLAIEPLPETPEQRALLLEL-DRYCAVIVVSKP 65 (255)
T ss_pred CCEEEECCcHHHHHHHHHHHHHcCCCEEEcCcEEEeeCCCCHHHHHHHhcC-CCCCEEEEECHH
Confidence 568999998654332 2456889999999864311 12334555555422 345678899887
No 485
>PTZ00081 enolase; Provisional
Probab=27.94 E-value=1.5e+02 Score=28.88 Aligned_cols=49 Identities=8% Similarity=0.213 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEe
Q psy7357 116 TIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLD 168 (302)
Q Consensus 116 ~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD 168 (302)
..+++++++.++ .+.+-++.--+|-.|.+. +..+++++|+++|..+++-
T Consensus 334 ~tn~~~l~~~I~---~~aad~i~iKvnqiGGIT-e~l~~a~lA~~~Gi~~iis 382 (439)
T PTZ00081 334 VTNPTRIKKAIE---KKACNALLLKVNQIGTVT-EAIEAAKLAQKNGWGVMVS 382 (439)
T ss_pred cCCHHHHHHHHH---hCCCCEEEeccccccCHH-HHHHHHHHHHHcCCcEEEe
Confidence 456888888887 343445555667778887 6889999999999888753
No 486
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=27.69 E-value=2.8e+02 Score=21.25 Aligned_cols=55 Identities=9% Similarity=0.071 Sum_probs=35.9
Q ss_pred EEEEeecCC--CCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEE
Q psy7357 105 SVEPVSVRK--DGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVY 166 (302)
Q Consensus 105 ~v~~i~~~~--~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~lli 166 (302)
+...+|... +.-+|.+.+.+.+.+. .+...+|.. |.+. .=.++++.|.+.|+.|+
T Consensus 47 ~~~~~~~~~~~~~yl~~e~I~~ia~~~-----g~~~i~pGy-g~ls-e~~~fa~~~~~~gi~fi 103 (110)
T PF00289_consen 47 EAYFEPPGPSPESYLNIEAIIDIARKE-----GADAIHPGY-GFLS-ENAEFAEACEDAGIIFI 103 (110)
T ss_dssp EEEEEESSSGGGTTTSHHHHHHHHHHT-----TESEEESTS-STTT-THHHHHHHHHHTT-EES
T ss_pred cceecCcchhhhhhccHHHHhhHhhhh-----cCccccccc-chhH-HHHHHHHHHHHCCCEEE
Confidence 666666222 3358999999998742 234455664 6666 36788888888888774
No 487
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=27.62 E-value=2.8e+02 Score=24.61 Aligned_cols=47 Identities=11% Similarity=0.107 Sum_probs=28.8
Q ss_pred CHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEe
Q psy7357 118 DFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLD 168 (302)
Q Consensus 118 D~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD 168 (302)
++.++.++++ ....-++.-.|.-.|-+. ...+++++|+++|+.+++-
T Consensus 187 ~~~~~~~~~~---~~~~d~v~~k~~~~GGit-~~~~i~~~a~~~gi~~~~~ 233 (263)
T cd03320 187 RLDDPLALAA---AGALGALVLKPALLGGPR-ALLELAEEARARGIPAVVS 233 (263)
T ss_pred cccCHHHHHh---cCCCCEEEECchhcCCHH-HHHHHHHHHHHcCCCEEEE
Confidence 4445555554 222223444455556565 5889999999999887654
No 488
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=27.30 E-value=49 Score=33.69 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=23.3
Q ss_pred ceeccccHHHHHHHHHHhCCEEEEecC
Q psy7357 144 FGVFEENITDVCELIHEHGGQVYLDGA 170 (302)
Q Consensus 144 ~G~~~~di~~I~~ia~~~g~llivD~a 170 (302)
+|..+ |++++.+.||++|+.||+|.+
T Consensus 202 ~Gt~~-dlk~lV~~~H~~Gi~VilD~V 227 (613)
T TIGR01515 202 FGTPD-DFMYFVDACHQAGIGVILDWV 227 (613)
T ss_pred cCCHH-HHHHHHHHHHHCCCEEEEEec
Confidence 56666 799999999999999999976
No 489
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=27.28 E-value=1.9e+02 Score=24.95 Aligned_cols=62 Identities=15% Similarity=0.177 Sum_probs=29.9
Q ss_pred HHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEE-Ee
Q psy7357 99 AQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVY-LD 168 (302)
Q Consensus 99 ~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~lli-vD 168 (302)
++..|+++.....+.+-....+.++.++. .++.++++..+++. ...+..+.+++.|+.++ +|
T Consensus 25 ~~~~g~~~~i~~~~~~~~~~~~~~~~~~~---~~vdgiii~~~~~~-----~~~~~~~~~~~~~ipvV~~~ 87 (267)
T cd06322 25 AKKQKVNLIVSIANQDLNKQLSDVEDFIT---KKVDAIVLSPVDSK-----GIRAAIAKAKKAGIPVITVD 87 (267)
T ss_pred HHhcCCEEEEecCCCCHHHHHHHHHHHHH---cCCCEEEEcCCChh-----hhHHHHHHHHHCCCCEEEEc
Confidence 44677777665542211111233444444 45677777543221 12333344566777543 44
No 490
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=27.22 E-value=48 Score=33.12 Aligned_cols=26 Identities=27% Similarity=0.534 Sum_probs=23.7
Q ss_pred ceeccccHHHHHHHHHHhCCEEEEecC
Q psy7357 144 FGVFEENITDVCELIHEHGGQVYLDGA 170 (302)
Q Consensus 144 ~G~~~~di~~I~~ia~~~g~llivD~a 170 (302)
+|..+ |++++.+-||++|+.||+|.+
T Consensus 72 ~Gt~~-df~~Lv~~ah~~Gi~vilD~V 97 (539)
T TIGR02456 72 FGTID-DFKDFVDEAHARGMRVIIDLV 97 (539)
T ss_pred hCCHH-HHHHHHHHHHHCCCEEEEEec
Confidence 48888 899999999999999999976
No 491
>TIGR00322 diphth2_R diphthamide biosynthesis protein 2-related domain. Because archaeal species are known to have the diphthamide modification to the conserved His of archaeal and eukaryotic EF-2, it may be that the lone homolog of YKL191W in M. jannaschii, A. fulgidus, and M. thermoautotrophicum is orthologous. However, each of these is considerably shorter than YKL191W and seems more closely related to the uncharacterized protein YIL103W than to YKL191W.
Probab=27.21 E-value=1.2e+02 Score=28.32 Aligned_cols=76 Identities=12% Similarity=0.206 Sum_probs=46.0
Q ss_pred CCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHH-hCCEEEEecCCccccccc----CCCCccCCcEEE
Q psy7357 116 TIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHE-HGGQVYLDGANMNAQVGL----CRPGDYGSDVSH 190 (302)
Q Consensus 116 ~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~-~g~llivD~a~~~~~~~~----~~p~~~gaDiv~ 190 (302)
.+|++++.+.|++. +.+-|.++-|. |... +-.+|+++.++ .+.-+++.+-. +.+.- ......++|+++
T Consensus 4 ~~e~~~~i~~I~~~--~~krV~LQfPd--gLl~-~a~~ia~~l~~~~~~~v~IlaD~--~YGaCcvdd~~a~~~~aD~iV 76 (332)
T TIGR00322 4 NLETEKVIGNIRKY--NAKRVGLQMPE--GLKI-RALEIAEIIEQFCGVETVISGDT--SFGACDIDDFTARALDVDLIV 76 (332)
T ss_pred cccHHHHHHHHHHc--CCCEEEEECCH--HHHH-HHHHHHHHHHhccCceEEEEcCC--ceecCCCCHHHHhhcCCCEEE
Confidence 45677777777653 33447777765 6776 67788888876 46665555421 22221 112235788777
Q ss_pred eCCCcccC
Q psy7357 191 LNLHKTFC 198 (302)
Q Consensus 191 ~~~hK~l~ 198 (302)
-=+|-+|+
T Consensus 77 HyGHscl~ 84 (332)
T TIGR00322 77 HYAHTPLV 84 (332)
T ss_pred EcCCCCCC
Confidence 77788776
No 492
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=27.15 E-value=2.3e+02 Score=24.17 Aligned_cols=39 Identities=8% Similarity=0.075 Sum_probs=19.0
Q ss_pred HHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEec
Q psy7357 99 AQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITY 140 (302)
Q Consensus 99 ~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~ 140 (302)
++..|+++...+.+.+..-..+.+++++. .+..++++..
T Consensus 25 ~~~~g~~~~~~~~~~~~~~~~~~i~~l~~---~~~dgii~~~ 63 (259)
T cd01542 25 LYENGYQMLLMNTNFSIEKEIEALELLAR---QKVDGIILLA 63 (259)
T ss_pred HHHCCCEEEEEeCCCCHHHHHHHHHHHHh---cCCCEEEEeC
Confidence 34567777666543221112333444444 4556666654
No 493
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=26.93 E-value=2e+02 Score=19.34 Aligned_cols=47 Identities=17% Similarity=0.224 Sum_probs=31.5
Q ss_pred CCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEE
Q psy7357 114 DGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVY 166 (302)
Q Consensus 114 ~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~lli 166 (302)
++...++++-+...+ ....++.++.-+. +. ...++.+.+++.|+.++
T Consensus 12 ~~~~~~~~~~~~a~~--~g~~~v~iTDh~~---~~-~~~~~~~~~~~~gi~~i 58 (67)
T smart00481 12 DGALSPEELVKRAKE--LGLKAIAITDHGN---LF-GAVEFYKAAKKAGIKPI 58 (67)
T ss_pred cccCCHHHHHHHHHH--cCCCEEEEeeCCc---cc-CHHHHHHHHHHcCCeEE
Confidence 567788888777764 5667788877542 22 34466677778887765
No 494
>PRK00077 eno enolase; Provisional
Probab=26.77 E-value=1.7e+02 Score=28.26 Aligned_cols=48 Identities=13% Similarity=0.197 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEE
Q psy7357 116 TIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYL 167 (302)
Q Consensus 116 ~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~lliv 167 (302)
..+++++++.++ .+..-++.--++-.|.+. +..+++++|+++|..+++
T Consensus 314 ~t~~~~~~~~i~---~~a~d~v~ik~~~~GGit-ea~~ia~lA~~~gi~~~v 361 (425)
T PRK00077 314 VTNTKRLKKGIE---KGAANSILIKVNQIGTLT-ETLDAIELAKRAGYTAVV 361 (425)
T ss_pred cCCHHHHHHHHH---hCCCCEEEeCccccCCHH-HHHHHHHHHHHcCCeEEE
Confidence 347888888887 333334455567678777 588999999999987653
No 495
>PRK08005 epimerase; Validated
Probab=26.59 E-value=1.4e+02 Score=25.88 Aligned_cols=87 Identities=9% Similarity=0.051 Sum_probs=47.4
Q ss_pred HHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceec--cccHHHHHHHHHHh-CCEEEEecCCcccc
Q psy7357 99 AQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVF--EENITDVCELIHEH-GGQVYLDGANMNAQ 175 (302)
Q Consensus 99 ~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~--~~di~~I~~ia~~~-g~llivD~a~~~~~ 175 (302)
.+..|+++ -+-+++. .+++.++..+.. -+...||..+|.+.|.- +.-+++|.++.+-. ...+-+|+. +..
T Consensus 102 Ik~~G~k~-GlAlnP~--Tp~~~i~~~l~~--vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~~~~I~VDGG--I~~ 174 (210)
T PRK08005 102 IRAIGAKA-GLALNPA--TPLLPYRYLALQ--LDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFPAAECWADGG--ITL 174 (210)
T ss_pred HHHcCCcE-EEEECCC--CCHHHHHHHHHh--cCEEEEEEecCCCccceecHHHHHHHHHHHHhcccCCEEEECC--CCH
Confidence 44556654 2333332 578888888863 46677888888776642 21244555443321 123668973 111
Q ss_pred cccCCCCccCCcEEEeC
Q psy7357 176 VGLCRPGDYGSDVSHLN 192 (302)
Q Consensus 176 ~~~~~p~~~gaDiv~~~ 192 (302)
.......+.|+|+++..
T Consensus 175 ~~i~~l~~aGad~~V~G 191 (210)
T PRK08005 175 RAARLLAAAGAQHLVIG 191 (210)
T ss_pred HHHHHHHHCCCCEEEEC
Confidence 11112235689988875
No 496
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=26.51 E-value=20 Score=30.28 Aligned_cols=42 Identities=19% Similarity=0.431 Sum_probs=28.2
Q ss_pred HHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHHHHhCCEEEEe
Q psy7357 119 FSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLD 168 (302)
Q Consensus 119 ~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia~~~g~llivD 168 (302)
.++++++++ .+...|++-+ |.+. +++++.+.+|++|-.+++.
T Consensus 9 ~~~l~~al~---s~~~~vfLl~----g~I~-~l~~~v~~~~~~gK~vfVH 50 (175)
T PF04309_consen 9 EEDLEKALE---SDVEVVFLLT----GDIG-NLKDIVKRLKAAGKKVFVH 50 (175)
T ss_dssp CCCCCCCCC---SSSSEEEE-S----EECC-CHHHHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHc---CCCCEEEEEc----CcHH-HHHHHHHHHHHcCCEEEEE
Confidence 344555665 4556677766 7777 7999999999998765543
No 497
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=26.33 E-value=6e+02 Score=24.54 Aligned_cols=80 Identities=13% Similarity=0.088 Sum_probs=47.3
Q ss_pred CEEEEcCCCCcccHH-HH---HhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEecCCCceeccccHHHHHHHH
Q psy7357 83 NVCLIPVSAHGTNPA-SA---QMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELI 158 (302)
Q Consensus 83 d~Vlv~~~~hg~~~~-~~---~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~Pn~~G~~~~di~~I~~ia 158 (302)
+.+.+-+|.+..... ++ +..|-. +.+-.|+....+++++++.++ .+..-++.--+|-.|.+. +..+++++|
T Consensus 279 ~i~~iEdPl~~~D~~~~~~L~~~~~~~-ipI~gDE~~~t~~~~~~~~i~---~~a~d~v~ik~~~iGGIt-ea~~ia~lA 353 (425)
T TIGR01060 279 PIVSIEDGLSEEDWEGWAELTKELGDK-VQIVGDDLFVTNTEILREGIE---MGVANSILIKPNQIGTLT-ETLDAVELA 353 (425)
T ss_pred CcEEEEcCCCcccHHHHHHHHHhcCCC-CeEEeCCCcccCHHHHHHHHH---hCCCCEEEecccccCCHH-HHHHHHHHH
Confidence 455666676543332 22 222111 222223333447899999987 333334455567778887 699999999
Q ss_pred HHhCCEEEE
Q psy7357 159 HEHGGQVYL 167 (302)
Q Consensus 159 ~~~g~lliv 167 (302)
+++|..+++
T Consensus 354 ~~~Gi~~vv 362 (425)
T TIGR01060 354 KKAGYTAVI 362 (425)
T ss_pred HHcCCcEEE
Confidence 999987653
No 498
>PLN03244 alpha-amylase; Provisional
Probab=26.21 E-value=59 Score=34.12 Aligned_cols=28 Identities=21% Similarity=0.385 Sum_probs=24.8
Q ss_pred CceeccccHHHHHHHHHHhCCEEEEecCC
Q psy7357 143 TFGVFEENITDVCELIHEHGGQVYLDGAN 171 (302)
Q Consensus 143 ~~G~~~~di~~I~~ia~~~g~llivD~a~ 171 (302)
.+|..+ |++++.+.||+.|+-||+|.++
T Consensus 436 RYGTPe-DLK~LVD~aH~~GI~VILDvV~ 463 (872)
T PLN03244 436 RYGTPD-DFKRLVDEAHGLGLLVFLDIVH 463 (872)
T ss_pred ccCCHH-HHHHHHHHHHHCCCEEEEEecC
Confidence 467777 8999999999999999999874
No 499
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=25.97 E-value=54 Score=31.75 Aligned_cols=27 Identities=33% Similarity=0.486 Sum_probs=24.8
Q ss_pred CceeccccHHHHHHHHHHhCCEEEEecC
Q psy7357 143 TFGVFEENITDVCELIHEHGGQVYLDGA 170 (302)
Q Consensus 143 ~~G~~~~di~~I~~ia~~~g~llivD~a 170 (302)
.+|..+ |++++.+-+|++|+.+++|.+
T Consensus 72 ~~Gt~~-d~~~li~~~H~~gi~vi~D~V 98 (505)
T COG0366 72 HFGTEE-DFKELVEEAHKRGIKVILDLV 98 (505)
T ss_pred ccCCHH-HHHHHHHHHHHCCCEEEEEec
Confidence 468999 899999999999999999975
No 500
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=25.85 E-value=3.8e+02 Score=23.03 Aligned_cols=39 Identities=10% Similarity=0.104 Sum_probs=20.1
Q ss_pred HHhCCCEEEEeecCCCCCCCHHHHHHHHhccCCCeEEEEEec
Q psy7357 99 AQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITY 140 (302)
Q Consensus 99 ~~~~g~~v~~i~~~~~g~iD~~~l~~~i~~~~~~t~~V~i~~ 140 (302)
++..|+++...+.+.+.....+.++.++. .++.++++..
T Consensus 25 ~~~~g~~~~~~~~~~~~~~~~~~i~~l~~---~~vdgiIi~~ 63 (273)
T cd06292 25 LAQYGYTVLLCNTYRGGVSEADYVEDLLA---RGVRGVVFIS 63 (273)
T ss_pred HHHCCCEEEEEeCCCChHHHHHHHHHHHH---cCCCEEEEeC
Confidence 44677777666543222222233444444 4566677654
Done!