RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7357
(302 letters)
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2)
tetramer, riken structural genomics/proteomi initiative,
RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP:
c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Length = 474
Score = 482 bits (1243), Expect = e-171
Identities = 124/337 (36%), Positives = 174/337 (51%), Gaps = 50/337 (14%)
Query: 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGA 60
MK N ++HP+ A+G +L+ EL L +TG D I+ +P +GA
Sbjct: 76 MKYNPKLHEEAA--RLFADLHPYQDPRTAQGALRLMWELGEYLKALTGMDAITLEPAAGA 133
Query: 61 QGEYAGLRAIQCYHQAQ-DAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDF 119
GE G+ I+ YH+ + + R V L+P SAHG+NPA+A MAG V + +G +D
Sbjct: 134 HGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSGPEGEVDL 193
Query: 120 SDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLC 179
L+ ++ + ++ LM+T P+T G+FE I ++ L E G Q+Y DGAN+NA +G
Sbjct: 194 EALKRELGPH---VAALMLTNPNTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMGWA 250
Query: 180 RPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLSSIDS-------- 231
RPGD G DV HLNLHKTF +PHGGGGPG GP+GVK+HLAP+LPV + +
Sbjct: 251 RPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDR 310
Query: 232 --SIGAVSAAHYGSASILPISWAYIRRL------------------------ESHYKTLF 265
SIG V + YG+ L +WAYIR L E Y+ +
Sbjct: 311 PKSIGRVRSF-YGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEKGYRVPY 369
Query: 266 RSSRSGLVAHEFVIDVRDFKKSANIEAVDIAKRLMDY 302
G HEFV A+D+AK L++
Sbjct: 370 D----GPSMHEFVAQ-----PPEGFRALDLAKGLLEL 397
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine
biosynthesis, seven-stranded BETE-strand, PYR
5'-phosphate; HET: PLP; 2.50A {Methanococcus
maripaludis} SCOP: c.67.1.9
Length = 456
Score = 52.0 bits (124), Expect = 1e-07
Identities = 37/201 (18%), Positives = 65/201 (32%), Gaps = 22/201 (10%)
Query: 16 QLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISF-QPNSGAQGEYAGLRAIQCYH 74
L + P A L ++ + G + + P S L A
Sbjct: 117 NLVDPQPKASG--ASIMYALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSA----- 169
Query: 75 QAQDAHHRNVCLIPVSAHGTNPASAQMAGM---SVEPVSVRKDGTIDFSDLETKVKKNKE 131
A+ + NV + P ++H + + GM VE V + D+E +KK E
Sbjct: 170 -ARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIE 228
Query: 132 T--LSCLMITYPST-FGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCR-----PGD 183
C++ T ++I ++ ++ + ++GA Q
Sbjct: 229 LGNRPCVLSTLTFFPPRNS-DDIVEIAKICENYDIPHIINGA-YAIQNNYYLEKLKKAFK 286
Query: 184 YGSDVSHLNLHKTFCIPHGGG 204
Y D + K P GGG
Sbjct: 287 YRVDAVVSSSDKNLLTPIGGG 307
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase,
pyridoxal 5'-phosphate, monovalent cation binding site;
HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Length = 467
Score = 49.8 bits (118), Expect = 5e-07
Identities = 41/240 (17%), Positives = 68/240 (28%), Gaps = 37/240 (15%)
Query: 1 MKLNATTEMIPC-SFPQLTNMHPFIPQDQARGYEQLIG-----ELETDLCEITGYDKISF 54
L ++ I + M G E G +L+ E+ YD I
Sbjct: 37 FLLPSSAVYIDLLTDSGTNAMSDHQWAAMITGDEAYAGSRNYYDLKDKAKELFNYDYIIP 96
Query: 55 QPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVR-- 112
G E + Y Q + V + T ++ V+ +
Sbjct: 97 AH-QGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAF 155
Query: 113 -------KDGTIDFSDLETKVKKNKET---LSCLMITYPSTFG--VFEENITDVCELIHE 160
G D L+ + ++ +T S G V N+ +V E+ +
Sbjct: 156 DSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQ 215
Query: 161 HGGQVYLDGANM--NAQVGLCRPGDYGS--------------DVSHLNLHKTFCIPHGGG 204
HG V +D A NA R Y + D ++ K + GG
Sbjct: 216 HGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGL 275
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase,
structural genomics; HET: PLP; 2.40A {Archaeoglobus
fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Length = 371
Score = 45.5 bits (108), Expect = 1e-05
Identities = 25/139 (17%), Positives = 60/139 (43%), Gaps = 27/139 (19%)
Query: 86 LIPVSAHGTNPASAQMAGMSVE--PVSVRKDGTIDFSDLETKVKKNKETLSCLM--ITYP 141
++ + H ++ +A+ AG+++ P + D I + +++ K+ ++ ITYP
Sbjct: 97 VMDENCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYP 156
Query: 142 S-TFGVFEENITDVCELIHEHGGQVYLDGA------NMNAQVGLCRPGDYGSDVSHLNLH 194
+G ++ + ++ E+ + ++GA ++ + + G+D + H
Sbjct: 157 DGNYGN-LPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLK-------EIGADFIVGSGH 208
Query: 195 KTFCIPHGGGGPGMGPIGV 213
K+ GPIGV
Sbjct: 209 KSM-------AA-SGPIGV 219
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme,
pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter
freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A
2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Length = 456
Score = 45.1 bits (106), Expect = 1e-05
Identities = 39/238 (16%), Positives = 65/238 (27%), Gaps = 43/238 (18%)
Query: 1 MKLNATTEMIPCSFPQLTNMHPFIPQ------DQARGYEQLIGELETDLCEITGYDKISF 54
LN+ I TN D+A + LE + E+ G+ I
Sbjct: 36 FLLNSKDIYIDLLTDSGTNAMSDKQWAGMMMGDEAYAGSENFYHLERTVQELFGFKHIVP 95
Query: 55 QPNSGAQGEYAGLRA--------IQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSV 106
+ G E + + +H +G
Sbjct: 96 -THQGRGAENLLSQLAIKPGQYVAGNMYFTTTRYH-------QEKNGAVFVDIVRDEAHD 147
Query: 107 EPVSVRKDGTIDFSDLE---TKVKKNKETLSCLMITYPSTFG--VFEENITDVCELIHEH 161
+++ G ID L+ + CL +T G V N+ V EL H
Sbjct: 148 AGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAH 207
Query: 162 GGQVYLDGANM--NAQVGLCRPGDYG--------------SDVSHLNLHKTFCIPHGG 203
G +V+ D NA + + +D ++ K + GG
Sbjct: 208 GIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLVNIGG 265
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2)
tetramer, riken structural genomics/proteomi initiative,
RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP:
c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Length = 438
Score = 44.9 bits (107), Expect = 2e-05
Identities = 26/113 (23%), Positives = 42/113 (37%), Gaps = 15/113 (13%)
Query: 116 TIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQ 175
T+ T + + E + +++ P+ G E++ E H G A+ +
Sbjct: 180 TLPLEGGRTPLPEVGEEVGAVVVQNPNFLGAL-EDLGPFAEAAHGAGALFVA-VADPLSL 237
Query: 176 VGLCRPGDYGSDV------SHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLP 222
L PG YG+D+ S +P G GGP G + K LP
Sbjct: 238 GVLKPPGAYGADIAVGDGQS-------LGLPMGFGGPHFGFLATKKAFVRQLP 283
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism;
HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2
PDB: 2c44_A 2v1p_A* 2v0y_A*
Length = 467
Score = 42.7 bits (100), Expect = 9e-05
Identities = 34/216 (15%), Positives = 60/216 (27%), Gaps = 27/216 (12%)
Query: 27 DQARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCL 86
D+A + L + I GY G E + + + + R+ +
Sbjct: 67 DEAYSGSRSYYALAESVKNIFGYQYTIPTH-QGRGAEQIYIPVLIKKREQEKGLDRSKMV 125
Query: 87 IPVSAHG-TNPASAQMAGMSVEPV----------SVRKDGTIDFSDLETKVKKNKE---T 132
+ T +Q+ G +V V G D LE +++
Sbjct: 126 AFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVP 185
Query: 133 LSCLMITYPSTFG--VFEENITDVCELIHEHGGQVYLDGANM--NAQVGLCRPGDYGSDV 188
IT S G V N+ + + ++ V +D A NA R +Y
Sbjct: 186 YIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWT 245
Query: 189 SHLNLHK--------TFCIPHGGGGPGMGPIGVKSH 216
+ P G + +K
Sbjct: 246 IEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDD 281
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine,
sepsecs, protein-RNA complex, alternative splicing,
cytoplasm, protein biosynthesis, pyridoxal phosphate,
selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Length = 501
Score = 42.4 bits (99), Expect = 1e-04
Identities = 19/131 (14%), Positives = 40/131 (30%), Gaps = 9/131 (6%)
Query: 83 NVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDG---TIDFSDLETKVKKNKETLSCLMIT 139
+ P + S AG + +G D +E KV++ + +
Sbjct: 163 KYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHS 222
Query: 140 YPSTFG-VFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNL----- 193
S F + + ++ + + ++ A G+ V ++
Sbjct: 223 TTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSL 282
Query: 194 HKTFCIPHGGG 204
K F +P GG
Sbjct: 283 DKNFMVPVGGA 293
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order
transition, phosphate-loop, pyridoxal phospha
selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A
{Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Length = 450
Score = 41.9 bits (98), Expect = 2e-04
Identities = 20/131 (15%), Positives = 41/131 (31%), Gaps = 9/131 (6%)
Query: 83 NVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDG---TIDFSDLETKVKK-NKETLSCLMI 138
+ P + S AG + +G D +E K+++ E + CL
Sbjct: 145 KYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHS 204
Query: 139 TYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNL----- 193
T + + ++ + + ++ A G+ V ++
Sbjct: 205 TTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSL 264
Query: 194 HKTFCIPHGGG 204
K F +P GG
Sbjct: 265 DKNFMVPVGGA 275
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 3e-04
Identities = 30/186 (16%), Positives = 52/186 (27%), Gaps = 62/186 (33%)
Query: 25 PQDQARGYEQLIGELETDLCEITGYDKISFQPNSG-------AQ-----GEYAGLRAIQC 72
D E++ E+ T F+ G Q E A ++
Sbjct: 1696 IVDGKLKTEKIFKEINEHSTSYT------FRSEKGLLSATQFTQPALTLMEKAAFEDLK- 1748
Query: 73 YHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSV-E---PVSVRKDGTIDFSD------- 121
+ G PA A AG S+ E S+ +
Sbjct: 1749 ------------------SKGLIPADATFAGHSLGEYAALASLA--DVMSIESLVEVVFY 1788
Query: 122 ----LETKVKKNKETLSCL-MITY-PSTFGVF--EENITDVCELIHEHGGQVYLDGANMN 173
++ V +++ S MI P +E + V E + + G + ++ N N
Sbjct: 1789 RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWL-VEIVNYN 1847
Query: 174 A---QV 176
Q
Sbjct: 1848 VENQQY 1853
Score = 32.7 bits (74), Expect = 0.17
Identities = 57/338 (16%), Positives = 89/338 (26%), Gaps = 120/338 (35%)
Query: 10 IPCSFPQLTNMHPFIPQ--DQ-----ARGYEQLIGELET----DLC-EITGYDKISFQPN 57
+ T Q +Q E + E +L + GY +S
Sbjct: 16 LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY--VSSLVE 73
Query: 58 SGAQGEYAG-LRAI-----QCYHQAQDAHHRNVCLIPVSAHGTNPASAQMA-------GM 104
G++ L CY + D H + T + ++ M
Sbjct: 74 PSKVGQFDQVLNLCLTEFENCYLEGNDIHAL-AAKLLQENDTTLVKTKELIKNYITARIM 132
Query: 105 SVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFG-------VFEE--NITD-- 153
+ P + + S L V + L + FG FEE ++
Sbjct: 133 AKRPFDKKSN-----SALFRAVGEGNAQL------V-AIFGGQGNTDDYFEELRDLYQTY 180
Query: 154 ---VCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGP 210
V +LI + L R + L+ K F G
Sbjct: 181 HVLVGDLIKFSAETLS----------ELIR--------TTLDAEKVF--TQG-------- 212
Query: 211 IGVKSHL-----AP---FL---PV-HPLSSIDSSIGAVSAAHYGSASILPISWAYIRRLE 258
+ + L P +L P+ PL IG + AHY + L
Sbjct: 213 LNILEWLENPSNTPDKDYLLSIPISCPL------IGVIQLAHY---------VVTAKLLG 257
Query: 259 SHYKTLFRSSRSGLVAHEFVIDVRDFKKSANIEAVDIA 296
L RS G H + + AV IA
Sbjct: 258 FTPGEL-RSYLKGATGH--SQGL--------VTAVAIA 284
Score = 32.7 bits (74), Expect = 0.19
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 25/95 (26%)
Query: 20 MHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNS-GAQGEY--AG-LRAIQCYHQ 75
+ Q+ + + +G+ L EI Y N Q Y AG LRA+
Sbjct: 1817 VAASFSQEALQYVVERVGKRTGWLVEIVNY-------NVENQQ--YVAAGDLRALDTVTN 1867
Query: 76 AQDA-HHRNVCLIPVSAHGTNPASAQMAGMSVEPV 109
+ + + +I + S +S+E V
Sbjct: 1868 VLNFIKLQKIDIIEL------QKS-----LSLEEV 1891
Score = 32.3 bits (73), Expect = 0.22
Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 31/105 (29%)
Query: 211 IGVKSHLAPFLPVHPLSSIDSSIGAVSAAH-YGSAS-ILPIS-------WAYIRRLESH- 260
IGV+ + A +P +S+ SI S + G S +L IS Y+ + SH
Sbjct: 306 IGVRCYEA-----YPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL 360
Query: 261 ------YKTLFRSSR----SG----LVAHEFVIDVRDFKKSANIE 291
+L ++ SG L + +R K + ++
Sbjct: 361 PAGKQVEISLVNGAKNLVVSGPPQSLYG--LNLTLRKAKAPSGLD 403
>3pj0_A LMO0305 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-biology,
lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Length = 359
Score = 40.0 bits (94), Expect = 6e-04
Identities = 25/161 (15%), Positives = 51/161 (31%), Gaps = 23/161 (14%)
Query: 38 ELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAH----- 92
+ ET + +I G F P SG + LR A +R V +H
Sbjct: 52 DFETKIAKILGKQSAVFFP-SGTMAQQIALRI----W-ADRKENRRV-AYHPLSHLEIHE 104
Query: 93 -GTNPASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVF--EE 149
++ ++ + + + D+++ + + + + G E
Sbjct: 105 QD---GLKELQQITPLLLGT-ANQLLTIDDIKSLREP--VSSVLIELPQREIGGQLPAFE 158
Query: 150 NITDVCELIHEHGGQVYLDGAN-MNAQVGL-CRPGDYGSDV 188
+ + E HE G ++LDGA + +
Sbjct: 159 ELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEICALF 199
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal
phosphate; HET: LLP; 2.00A {Symbiobacterium
thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Length = 514
Score = 39.9 bits (93), Expect = 8e-04
Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 4/106 (3%)
Query: 65 AGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFSDLET 124
A + ++PVSAH +AQ G+ + + D D + +
Sbjct: 176 AMKTYRDWARATKGITAPEA-VVPVSAHAAFDKAAQYFGIKLVRTPLDADYRADVAAMRE 234
Query: 125 KVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGA 170
+ N + + P + I ++ L EHG ++D
Sbjct: 235 AITPNT---VVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDAC 277
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'-
phosphate, calcium binding site, structural genomics,
PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP:
c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Length = 347
Score = 39.2 bits (92), Expect = 0.001
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 14/119 (11%)
Query: 97 ASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKN-----KETLSCLMITYPSTFGVF--EE 149
A A ++G+ PV K+G +D D+ ++ + +L + T+ + G E
Sbjct: 95 AMAVLSGVMPHPV-PGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLE 153
Query: 150 NITDVCELIHEHGGQVYLDGANM-NAQVGL-CRPGDYGSDVSHLNLHKTFCIPHGGGGP 206
NI ++C + EHG V++DGA + NA + +Y + FC+ G P
Sbjct: 154 NIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSV----MFCLSKGLCAP 208
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas
putida} SCOP: c.67.1.1
Length = 356
Score = 37.2 bits (87), Expect = 0.005
Identities = 24/153 (15%), Positives = 49/153 (32%), Gaps = 21/153 (13%)
Query: 38 ELETDLCEITGYDKISFQPNSGAQGEYAGLRAI-QCYHQ---AQDAHHRNVCLIPVSAHG 93
+++ CEI D F +G L A+ + +H ++
Sbjct: 47 QVKRKFCEIFERDVEVFLVPTGTAANALCLSAMTPPWGNIYCHPASH--------INNDE 98
Query: 94 TNPASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKE-----TLSCLMITYPSTFGVF- 147
G + V +D L + ++ +C+ IT + G
Sbjct: 99 CGAPEFFSNGAKLMTVD-GPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIY 157
Query: 148 -EENITDVCELIHEHGGQVYLDGANM-NAQVGL 178
+ I + ++ +++DG+ NA V L
Sbjct: 158 TLDEIEAIGDVCKSSSLGLHMDGSRFANALVSL 190
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase;
structural genomics, joint center for structural
genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium
sibiricum}
Length = 357
Score = 36.1 bits (84), Expect = 0.011
Identities = 23/161 (14%), Positives = 43/161 (26%), Gaps = 24/161 (14%)
Query: 38 ELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAH----- 92
E ++ G D F P SG + LR + + +R V H
Sbjct: 51 PFEQKFADVLGMDDAVFFP-SGTMAQQVALRI-----WSDETDNRTV-AYHPLCHLEIHE 103
Query: 93 -GTNPASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVF--EE 149
++ + V D + +++ L + GV
Sbjct: 104 QD---GLKELHPIETILVG-AADRLMTLDEIKALPDI---ACLLLELPQREIGGVAPAFS 156
Query: 150 NITDVCELIHEHGGQVYLDGAN-MNAQVGL-CRPGDYGSDV 188
+ + E G +++LDGA +
Sbjct: 157 ELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIAGLF 197
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.021
Identities = 44/281 (15%), Positives = 74/281 (26%), Gaps = 90/281 (32%)
Query: 87 IPVSAHGTNPASAQMAGMSVEPVSVRKDG--TIDFSDLETKVKKNKETLSCLMITYPST- 143
+P TNP + S+ +DG T D K S L + P+
Sbjct: 318 LPREVLTTNPRRLSIIAESI------RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371
Query: 144 ------FGVFEEN---------------ITDVCELI------------HEHGGQVYLDGA 170
VF + I ++ + +
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI--- 428
Query: 171 NMNAQVGLCRPGDYGSD-----VSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHP 225
+ + L + V H N+ KTF + P + + + H
Sbjct: 429 -PSIYLELKVKLENEYALHRSIVDHYNIPKTFD------SDDLIPPYLDQYFYSHIGHH- 480
Query: 226 LSS-------------------IDSSIGAVSAAHYGSASILPISW------AYIRRLESH 260
L + ++ I S A S SIL YI +
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540
Query: 261 YKTLFRSSRSGLVAHEFVIDVRDFKKSANIEAVDIAKRLMD 301
Y+ L + L E + + K ++ + IA LM
Sbjct: 541 YERLVNAILDFLPKIEENL-ICS--KYTDL--LRIA--LMA 574
Score = 28.3 bits (62), Expect = 4.4
Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 17/85 (20%)
Query: 2 KLNATTEMIPCS------FPQLTNMHPFIPQDQARGYEQLIGEL-------ETDL--CEI 46
K+ + S QL P+I D YE+L+ + E +L +
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYI-CDNDPKYERLVNAILDFLPKIEENLICSKY 564
Query: 47 TGYDKISFQPNSGAQGEYAGLRAIQ 71
T +I+ A E A + +Q
Sbjct: 565 TDLLRIALMAEDEAIFEEA-HKQVQ 588
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl
phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Length = 497
Score = 32.2 bits (73), Expect = 0.20
Identities = 16/109 (14%), Positives = 40/109 (36%), Gaps = 9/109 (8%)
Query: 65 AGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSV---RKDGTIDFSD 121
A L A + + + PV+AH +A ++ V +D
Sbjct: 142 ACLSAKMYALHHRGITEPEI-IAPVTAHAGFDKAAYY--FGMKLRHVELDPTTYQVDLGK 198
Query: 122 LETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGA 170
++ + KN L+ + P+ ++I + ++ ++ +++D
Sbjct: 199 VKKFINKN---TVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSC 244
>1zva_A E2 glycoprotein; membrane fusion, virus entry, coiled C
conformational change, viral protein; 1.50A {Sars
coronavirus} SCOP: h.3.3.1 PDB: 1zv8_B
Length = 77
Score = 29.4 bits (65), Expect = 0.28
Identities = 10/58 (17%), Positives = 21/58 (36%)
Query: 119 FSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQV 176
L+ V +N + L+ L+ S FG + D+ + N+ ++
Sbjct: 2 LGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDISGGRGGDISGINASVVNIQKEI 59
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC,
malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4
PDB: 3lg0_A 3ntj_A
Length = 433
Score = 31.4 bits (72), Expect = 0.38
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 37 GELETDLCEITGYDKISFQPNSGA 60
G E L + GYDK+ N+GA
Sbjct: 110 GICERYLTNLLGYDKVLMM-NTGA 132
>1jmk_C SRFTE, surfactin synthetase; thioesterase, non-ribosomal peptide
synthesis, alpha-beta hydrolase, cyclic peptide; 1.71A
{Bacillus subtilis} SCOP: c.69.1.22
Length = 230
Score = 29.8 bits (67), Expect = 0.78
Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 17/82 (20%)
Query: 197 FCIPHGGGGPGMGPIGVKSHLAPFLPVHPLSSIDSSIGAVSAAHYGSASILPISWAYIRR 256
F G G+ + +L+ LP + L + D Y I++
Sbjct: 21 FAF-PPVLGYGL----MYQNLSSRLPSYKLCAFDFIEEEDRLDRY---------ADLIQK 66
Query: 257 LESH--YKTLFRSSRSGLVAHE 276
L+ TLF S +A E
Sbjct: 67 LQPEGPL-TLFGYSAGCSLAFE 87
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium
tuberculosis}
Length = 406
Score = 30.3 bits (69), Expect = 0.85
Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 22/115 (19%)
Query: 99 AQMAGMSVEPVSVRKD-GTIDFSDLETKVKKNKETLSCLMITYPS-TFGVFEENITDVCE 156
A G V+ V + G + E+ + K+ ++ + S T G +TD+
Sbjct: 134 AHRYGAKVKWAEVDIETGELPTWQWESLISKSTRLVA---VNSASGTLGG----VTDLRA 186
Query: 157 LI---HEHGGQVYLDGA----NMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGG 204
+ H+ G V +D + + + +DV +N H + P G
Sbjct: 187 MTKLVHDVGALVVVDHSAAAPYRLLDI-----RETDADVVTVNAHA-WGGPPIGA 235
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase
involved in aluminum resist structural genomics; HET:
MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Length = 427
Score = 29.8 bits (67), Expect = 1.1
Identities = 18/122 (14%), Positives = 42/122 (34%), Gaps = 11/122 (9%)
Query: 103 GMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITD---VCELIH 159
G++ + V +++DG + ++E +K+++ + I D + + +
Sbjct: 148 GINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVK 207
Query: 160 E--HGGQVYLDGANMNAQ-VGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSH 216
++D N + + P D G+D+ GG P G +
Sbjct: 208 NIRKDIICFVD--NCYGEFMDTKEPTDVGADLI---AGSLIKNIGGGIAPTGGYLAGTKD 262
Query: 217 LA 218
Sbjct: 263 CI 264
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for
structural genomics O infectious diseases, alpha and
beta protein; HET: LLP; 2.65A {Bacillus anthracis}
Length = 392
Score = 29.8 bits (68), Expect = 1.2
Identities = 5/24 (20%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 37 GELETDLCEITGYDKISFQPNSGA 60
G + ++T + + N+GA
Sbjct: 81 GPWYEKVAKLTNKEMVLPM-NTGA 103
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase;
PLP, structural genomics, NPPSFA; HET: PLP; 1.90A
{Pyrococcus horikoshii}
Length = 386
Score = 29.5 bits (67), Expect = 1.2
Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Query: 99 AQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP--STFGVFEENITDVCE 156
+ G + + DL+ ++KN + + ITY ST GV + ++ +
Sbjct: 114 VESNGRKAVVLEYEPGKAVKPEDLDDALRKNPDV-EAVTITYNETST-GVLN-PLPELAK 170
Query: 157 LIHEHGGQVYLDG 169
+ EH V++D
Sbjct: 171 VAKEHDKLVFVDA 183
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase,
pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis
thaliana}
Length = 502
Score = 29.6 bits (66), Expect = 1.3
Identities = 14/86 (16%), Positives = 27/86 (31%), Gaps = 8/86 (9%)
Query: 86 LIPVSAHGTNPASAQMAGMSVEPVSVRKDG---TIDFSDLETKVKKNKETLSCLMITYPS 142
+ + A+ VE V+ +D V +N C+ S
Sbjct: 158 VTGANVQVCWEKFARY--FEVELKEVKLSEGYYVMDPQQAVDMVDENT---ICVAAILGS 212
Query: 143 TFGVFEENITDVCELIHEHGGQVYLD 168
T E++ + +L+ E + D
Sbjct: 213 TLNGEFEDVKLLNDLLVEKNKETGWD 238
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase;
HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Length = 420
Score = 29.4 bits (67), Expect = 1.4
Identities = 13/76 (17%), Positives = 31/76 (40%), Gaps = 11/76 (14%)
Query: 99 AQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPS-TFGVFEENITDVCEL 157
A G ++ V + + + D +T + + + ++ + + S T G + E+
Sbjct: 139 AAKTGAVLKFVQLDEQESFDLEHFKTLLSEKTKLVT---VVHISNTLGC----VNPAEEI 191
Query: 158 I---HEHGGQVYLDGA 170
H+ G +V +D
Sbjct: 192 AQLAHQAGAKVLVDAC 207
>1miu_A BRCA2, breast cancer type 2 susceptibility protein; tumor
suppressor, breast cancer susceptibility, DNA-binding;
3.10A {Mus musculus} SCOP: a.170.1.1 a.171.1.1 b.40.4.3
b.40.4.3 b.40.4.3 PDB: 1iyj_B 1mje_A
Length = 738
Score = 29.5 bits (65), Expect = 1.5
Identities = 23/108 (21%), Positives = 37/108 (34%), Gaps = 10/108 (9%)
Query: 162 GGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL 221
G ++ GA + C P + + L + P +G PF
Sbjct: 292 GQKIITQGAELVGSPDACAPLEAPDSLR-LKISANSTRP----ARWHSRLGFFRDPRPFP 346
Query: 222 PVHPLSSIDSSIGAVSAAHYGSASILPISWAYIRRLESHYKTLFRSSR 269
PLSS+ S G V + P+ ++ + S +FRS R
Sbjct: 347 L--PLSSLFSDGGNVGCVDIIVQRVYPL--QWVEKTVS-GLYIFRSER 389
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent
ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens}
SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A*
2can_A*
Length = 439
Score = 29.1 bits (66), Expect = 1.7
Identities = 7/24 (29%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 37 GELETDLCEITGYDKISFQPNSGA 60
GE E + ++ Y K+ N+G
Sbjct: 121 GEYEEYITKLFNYHKVLPM-NTGV 143
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative
aminotransferase, structural genomics, center for
structural genomics, JCSG; HET: PLP; 1.65A {Mus
musculus} PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Length = 393
Score = 29.1 bits (66), Expect = 1.8
Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 6/73 (8%)
Query: 99 AQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP--STFGVFEENITDVCE 156
A G V + + ++E + ++K L L + + ST GV + + E
Sbjct: 117 ADRIGARVHQMIKKPGEHYTLQEVEEGLAQHKPVL--LFLVHGESST-GVVQ-PLDGFGE 172
Query: 157 LIHEHGGQVYLDG 169
L H + + +D
Sbjct: 173 LCHRYQCLLLVDS 185
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14,
autoinhibition, substituted aldamine, lyase; HET: PLP;
1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A*
1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Length = 452
Score = 29.2 bits (65), Expect = 2.1
Identities = 14/111 (12%), Positives = 32/111 (28%), Gaps = 2/111 (1%)
Query: 58 SGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTI 117
+ G A + +A L+ A+ VE +
Sbjct: 115 ACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARY--WDVELREIPMRPGQ 172
Query: 118 DFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLD 168
F D + ++ E ++ T+ T+ E + + + + +D
Sbjct: 173 LFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGID 223
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative
PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A
{Lactobacillus delbrueckii subsp}
Length = 391
Score = 29.0 bits (66), Expect = 2.2
Identities = 4/25 (16%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 111 VRKDG--TIDFSDLETKVKKNKETL 133
+ ++ +++++DLE K+ +
Sbjct: 139 IYENSKYSVNWADLEEKLATPSVRM 163
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A
{Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Length = 392
Score = 28.8 bits (65), Expect = 2.3
Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 15/119 (12%)
Query: 99 AQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP--STFGVFEENITDVCE 156
A+ + + V + ID + +K + E + + + + + G I +
Sbjct: 102 AKRYSPHLLEIEVPYNEAIDPQAVADMLKAHPEI-TVVSVCHHDTPS-GTIN-PIDAIGA 158
Query: 157 LIHEHGGQVYLDGANMNAQVGL--CRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGV 213
L+ HG + +D + G P D +D+ +K P PG+ +GV
Sbjct: 159 LVSAHGAYLIVDAV---SSFGGMKTHPEDCKADIYVTGPNKCLGAP-----PGLTMMGV 209
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: PLP; 1.70A {Nostoc SP}
SCOP: c.67.1.3
Length = 393
Score = 28.8 bits (65), Expect = 2.6
Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 6/73 (8%)
Query: 99 AQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP--STFGVFEENITDVCE 156
A G V +S +L T ++ ++ + L + + ST G + + V E
Sbjct: 128 AGRYGADVRTISKPWGEVFSLEELRTALETHRPAI--LALVHAETST-GARQ-PLEGVGE 183
Query: 157 LIHEHGGQVYLDG 169
L E G + +D
Sbjct: 184 LCREFGTLLLVDT 196
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal
phosphate, structural PSI, protein structure initiative;
HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB:
1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Length = 406
Score = 28.6 bits (65), Expect = 2.6
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 11/76 (14%)
Query: 99 AQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYPS-TFGVFEENITDVCEL 157
G + + + DGT+ L T + L+ IT+ S G + E+
Sbjct: 134 CARVGAELRVIPLNPDGTLQLETLPTLFDEKTRLLA---ITHVSNVLGT----ENPLAEM 186
Query: 158 I---HEHGGQVYLDGA 170
I H+HG +V +DGA
Sbjct: 187 ITLAHQHGAKVLVDGA 202
>3l8a_A METC, putative aminotransferase, probable beta-cystathi;
beta-cystathionase, lyase; HET: PLP; 1.54A
{Streptococcus mutans}
Length = 421
Score = 28.7 bits (65), Expect = 2.9
Identities = 7/25 (28%), Positives = 10/25 (40%), Gaps = 2/25 (8%)
Query: 111 VRKDG--TIDFSDLETKVKKNKETL 133
+G IDF LE + N +
Sbjct: 173 QIINGRFEIDFEQLEKDIIDNNVKI 197
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate;
HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3
PDB: 1c7o_A*
Length = 399
Score = 28.3 bits (64), Expect = 3.0
Identities = 10/25 (40%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 111 VRKDG--TIDFSDLETKVKKNKETL 133
+ KDG TIDF LE K
Sbjct: 143 LEKDGYYTIDFQKLEKLSKDKNNKA 167
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein,
PLP-dependent transferase; HET: LLP; 1.75A {Aedes
aegypti} PDB: 2hui_A* 2huu_A*
Length = 393
Score = 28.4 bits (64), Expect = 3.1
Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 99 AQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP--STFGVFEENITDVCE 156
A G V V + ++ ++ + +K ++ L +T ST GV + + V
Sbjct: 113 ATRYGADVRVVKSKVGQSLSLDEIRDALLIHKPSV--LFLTQGDSST-GVLQ-GLEGVGA 168
Query: 157 LIHEHGGQVYLDG 169
L H+H + +D
Sbjct: 169 LCHQHNCLLIVDT 181
>1ti6_A Pyrogallol hydroxytransferase large subunit; molybdenum binding
enzyme, MGD-cofactors, DMSO-reductase family,
4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter
acidigallici} SCOP: b.52.2.2 c.81.1.1 PDB: 1ti2_A*
1ti4_A* 1vld_M* 1vle_M* 1vlf_M*
Length = 875
Score = 28.4 bits (63), Expect = 3.2
Identities = 8/68 (11%), Positives = 18/68 (26%), Gaps = 5/68 (7%)
Query: 159 HEHGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLA 218
HG + + G+ +PG + + + + + PG G+
Sbjct: 360 ASHGIEWARGMIALATMQGMGKPG-----SNMWSTTQGVPLDYEFYFPGYAEGGISGDCE 414
Query: 219 PFLPVHPL 226
Sbjct: 415 NSAAGFKF 422
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP;
2.58A {Klebsiella pneumoniae}
Length = 411
Score = 28.4 bits (64), Expect = 3.5
Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 6/73 (8%)
Query: 99 AQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP--STFGVFEENITDVCE 156
A+ V + V +E VK+ + L L+ ST + + + ++ E
Sbjct: 107 ARRCRAEVHTIEVPWGEVFTPDQVEDAVKRIRPRL--LLTVQGDTST-TMLQ-PLAELGE 162
Query: 157 LIHEHGGQVYLDG 169
+ + Y D
Sbjct: 163 ICRRYDALFYTDA 175
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus}
PDB: 3b1c_A* 3b1e_A*
Length = 392
Score = 28.2 bits (64), Expect = 3.6
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 111 VRKDG--TIDFSDLETKVKKNKETL 133
++G IDF LE + +N L
Sbjct: 143 KEENGLFQIDFEQLENDIVENDVKL 167
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.30A {Chromobacterium violaceum
atcc 12472}
Length = 381
Score = 28.2 bits (62), Expect = 3.7
Identities = 4/28 (14%), Positives = 10/28 (35%)
Query: 80 HHRNVCLIPVSAHGTNPASAQMAGMSVE 107
H + L+ + + + M+V
Sbjct: 260 HDGKLVLLGDALQSGHFSIGHGTTMAVV 287
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 4.0
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 14/39 (35%)
Query: 33 EQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQ 71
+Q + +L+ L K+ + +S L AI+
Sbjct: 19 KQALKKLQASL-------KL-YADDSA-----PAL-AIK 43
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 27.2 bits (61), Expect = 4.3
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 93 GTNPASAQMAGMSVEPVSVRKDGTIDFSD 121
G NP + + + S+R ++
Sbjct: 34 GYNPTNQLVQDIINADSSLRDASSLTLDQ 62
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway,
transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP:
c.67.1.3 PDB: 2ch2_A*
Length = 396
Score = 27.6 bits (62), Expect = 5.1
Identities = 12/73 (16%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 99 AQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKETLSCLMITYP--STFGVFEENITDVCE 156
++ G V + D L ++ ++ L +T+ S+ G+ + + V +
Sbjct: 112 SERYGADVRTIEGPPDRPFSLETLARAIELHQPKC--LFLTHGDSSS-GLLQ-PLEGVGQ 167
Query: 157 LIHEHGGQVYLDG 169
+ H+H + +D
Sbjct: 168 ICHQHDCLLIVDA 180
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national
PROJ protein structural and functional analyses; HET:
PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Length = 353
Score = 27.5 bits (62), Expect = 6.1
Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 20/80 (25%)
Query: 99 AQMAGMSVEPVSVRKDGTIDFSDLETKVKKNK---------ETLSCLMITYPSTFGVFEE 149
A + G+ E + +D + +K+ + ET ST GV
Sbjct: 93 AALHGLDPEVLDFPPGEPVDPEAVARALKRRRYRMVALVHGET---------ST-GVLN- 141
Query: 150 NITDVCELIHEHGGQVYLDG 169
+ L E G +LD
Sbjct: 142 PAEAIGALAKEAGALFFLDA 161
>1svv_A Threonine aldolase; structural genomics, structural genomics of
pathogenic proto SGPP, protein structure initiative,
PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Length = 359
Score = 27.2 bits (61), Expect = 6.3
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 149 ENITDVCELIHEHGGQVYLDGANM-NAQVGL 178
+ + D+ EHG ++LDGA + +A
Sbjct: 164 QELEDISASCKEHGLYLFLDGARLASALSSP 194
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD,
STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus
thermophilus}
Length = 385
Score = 27.1 bits (61), Expect = 6.7
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 8/56 (14%)
Query: 198 CIPHGGGGPGMGPIGVKSHLAPFLPVHPLSSIDSSIGAVSAAHYGSASILPISWAY 253
+P GG G+ S A L + L +DS + + + S + PI +AY
Sbjct: 60 TLPPEYGGAGV------SSAAYGLICYELERVDSGLRSFVSVQ-SSLVMYPI-YAY 107
>2k2q_B Surfactin synthetase thioesterase subunit; A/B-hydrolase, NRPS,
non-ribosomal peptide synthetase, type II thioesterase,
antibiotic biosynthesis; NMR {Bacillus subtilis} PDB:
2ron_A
Length = 242
Score = 26.7 bits (59), Expect = 8.0
Identities = 5/30 (16%), Positives = 8/30 (26%), Gaps = 1/30 (3%)
Query: 197 FCIPHGGGGPGMGPIGVKSHLAPFLPVHPL 226
C P GG + + L +
Sbjct: 17 ICFPFAGGYSASF-RPLHAFLQGECEMLAA 45
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein,
ligase phosphoprotein, TER module, phosphopantetheine;
2.60A {Bacillus subtilis}
Length = 1304
Score = 27.2 bits (61), Expect = 8.4
Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 17/82 (20%)
Query: 197 FCIPHGGGGPGMGPIGVKSHLAPFLPVHPLSSIDSSIGAVSAAHYGSASILPISWAYIRR 256
F P P +G + +L+ LP + L + D Y I++
Sbjct: 1062 FAFP-----PVLGYGLMYQNLSSRLPSYKLCAFDFIEEEDRLDRYADL---------IQK 1107
Query: 257 LESH--YKTLFRSSRSGLVAHE 276
L+ TLF S +A E
Sbjct: 1108 LQPEGPL-TLFGYSAGCSLAFE 1128
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 27.1 bits (60), Expect = 8.8
Identities = 24/165 (14%), Positives = 43/165 (26%), Gaps = 44/165 (26%)
Query: 59 GAQ--GEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGT 116
G G A A D R+ +P G +A+ SV+ S +
Sbjct: 1198 GVPIYGIVAM------AATATDKIGRS---VPAPGKG-ILTTAREHHSSVKYASPNLNMK 1247
Query: 117 IDFSDLETKVKKNKETLSCLMITYPSTFGVFEENIT-----DVCELIHEHGGQVYL---- 167
L T+ + K+ + + + D E + E +++
Sbjct: 1248 YRKRQLVTREAQIKDWV-------ENELEALKLEAEEIPSEDQNEFLLERTREIHNEAES 1300
Query: 168 ----------------DGANMNAQVGLCRPGDYGSDVSHLNLHKT 196
D + L G D+ + H T
Sbjct: 1301 QLRAAQQQWGNDFYKRDPRIAPLRGALATYGLTIDDLGVASFHGT 1345
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 26.7 bits (59), Expect = 9.0
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 113 KDGTIDFSDLETKVKKNKETLSCLMITY 140
DG ID + + V N + + + Y
Sbjct: 168 NDGKIDIDEWKDFVSLNPSLIKNMTLPY 195
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 26.7 bits (59), Expect = 9.4
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 113 KDGTIDFSDLETKVKKNKETLSCLMITYP 141
DG ID + + V ++ L + + Y
Sbjct: 179 HDGKIDKEEWRSLVLRHPSLLKNMTLQYL 207
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain,
small C-TER domain, open alpha-beta structure.,
transferase; HET: PLP; 2.50A {Escherichia coli} SCOP:
c.67.1.3
Length = 390
Score = 26.7 bits (60), Expect = 10.0
Identities = 4/25 (16%), Positives = 9/25 (36%), Gaps = 2/25 (8%)
Query: 111 VRKDG--TIDFSDLETKVKKNKETL 133
++ D LE + K + +
Sbjct: 141 EKQADGWFCDMGKLEAVLAKPECKI 165
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.411
Gapped
Lambda K H
0.267 0.0821 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,630,462
Number of extensions: 273743
Number of successful extensions: 837
Number of sequences better than 10.0: 1
Number of HSP's gapped: 820
Number of HSP's successfully gapped: 70
Length of query: 302
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 209
Effective length of database: 4,105,140
Effective search space: 857974260
Effective search space used: 857974260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.6 bits)