RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7357
(302 letters)
>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2
(P-protein) {Thermus thermophilus [TaxId: 274]}
Length = 471
Score = 182 bits (463), Expect = 9e-55
Identities = 108/332 (32%), Positives = 156/332 (46%), Gaps = 40/332 (12%)
Query: 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGA 60
MK N ++HP+ A+G +L+ EL L +TG D I+ +P +GA
Sbjct: 75 MKYNPKLHEEAARL--FADLHPYQDPRTAQGALRLMWELGEYLKALTGMDAITLEPAAGA 132
Query: 61 QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFS 120
GE G+ I+ YH+ + ++ + + + V G
Sbjct: 133 HGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAG--YQVREIPSGPEGEV 190
Query: 121 DLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCR 180
DLE ++ ++ LM+T P+T G+FE I ++ L E G Q+Y DGAN+NA +G R
Sbjct: 191 DLEALKRELGPHVAALMLTNPNTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMGWAR 250
Query: 181 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPL----------SSID 230
PGD G DV HLNLHKTF +PHGGGGPG GP+GVK+HLAP+LPV +
Sbjct: 251 PGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRP 310
Query: 231 SSIGAVSAAHYGSASILPISWAYIRRL------ESHYKTLFRSSR--------------S 270
SIG V + YG+ L +WAYIR L ++ + +
Sbjct: 311 KSIGRVR-SFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEKGYRVPYD 369
Query: 271 GLVAHEFVIDVRDFKKSANIEAVDIAKRLMDY 302
G HEFV + A+D+AK L++
Sbjct: 370 GPSMHEFVA-----QPPEGFRALDLAKGLLEL 396
>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating)
subunit 1 {Thermus thermophilus [TaxId: 274]}
Length = 437
Score = 133 bits (335), Expect = 1e-36
Identities = 41/342 (11%), Positives = 91/342 (26%), Gaps = 61/342 (17%)
Query: 1 MKLNATTEMIPCSFPQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGA 60
+ + + LT P+ P+ ++G Q E +T + E+ G + + GA
Sbjct: 76 HHVPPVVQALAARGEFLTAYTPYQPE-VSQGVLQATFEYQTMIAELAGLEIANASMYDGA 134
Query: 61 QGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFS 120
G+ A + G + + + T
Sbjct: 135 TALAEGVLLALRETGRMGVLVSQGV--HPEYRAVLRAYLEAVGAKLLTLPLEGGRTPLP- 191
Query: 121 DLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCR 180
+ E + +++ P+ G +++ A+ + L
Sbjct: 192 -------EVGEEVGAVVVQNPNFL--GALEDLGPFAEAAHGAGALFVAVADPLSLGVLKP 242
Query: 181 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPL-------------- 226
PG YG+D++ + ++ +P G GGP G + K LP +
Sbjct: 243 PGAYGADIAVGD-GQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFIL 301
Query: 227 ------SSIDSSIGAVSAAHYGSASILPISWAYIRRLESHYKTL---------------- 264
I + + + L + + +
Sbjct: 302 TLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLL 361
Query: 265 ----FRSSRSGLVAHEFVIDVRDFKKSANIEAVDIAKRLMDY 302
R +EF + + + + + L +
Sbjct: 362 EVPGVRPFTPKPFFNEFALAL-------PKDPEAVRRALAER 396
>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 445
Score = 118 bits (295), Expect = 6e-31
Identities = 28/304 (9%), Positives = 75/304 (24%), Gaps = 20/304 (6%)
Query: 15 PQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYH 74
++ + P + ++ L ++ ++ G ++ +
Sbjct: 77 GDISAVQPKAAG--SSLLNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLR 134
Query: 75 QAQDAHHRNVCLIPVSAHGTNPASAQMAGM---SVEPVSVRKDGTIDFSDLETKVKKNKE 131
+ + P + S AG +E V + D +E K+++
Sbjct: 135 HKR--PKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGP 192
Query: 132 T-LSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDY-----G 185
+ CL T + + ++ + + ++ A
Sbjct: 193 EHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGR 252
Query: 186 SDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFL-------PVHPLSSIDSSIGAVSA 238
D +L K F +P GG ++ P + S+G
Sbjct: 253 IDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCSGY 312
Query: 239 AHYGSASILPISWAYIRRLESHYKTLFRSSRSGLVAHEFVIDVRDFKKSANIEAVDIAKR 298
+ + + R ++ + ++ + +
Sbjct: 313 RKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSM 372
Query: 299 LMDY 302
L
Sbjct: 373 LFTR 376
>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
{Methanococcus maripaludis [TaxId: 39152]}
Length = 434
Score = 118 bits (295), Expect = 7e-31
Identities = 41/311 (13%), Positives = 86/311 (27%), Gaps = 31/311 (9%)
Query: 15 PQLTNMHPFIPQDQARGYEQLIGELETDLCEITGYDK-ISFQPNSGAQGEYAGLRAIQCY 73
L + P A L ++ + G + P S L A
Sbjct: 96 GNLVDPQPKASG--ASIMYALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSA---- 149
Query: 74 HQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDG---TIDFSDLETKVKKNK 130
A+ + NV + P ++H + + GM++ V DG + D+E +KK
Sbjct: 150 --ARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEI 207
Query: 131 ET--LSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCR----PGDY 184
E C++ T ++I ++ ++ + ++GA Y
Sbjct: 208 ELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKY 267
Query: 185 GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPV--HPLSSIDSSIGAVSAAHYG 242
D + K P GGG ++ P +++ + +S
Sbjct: 268 RVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMGSKN 327
Query: 243 SASILPISWAYIRRL--------ESHYKTLFRSSRSGLVAHEFVIDVRDFK---KSANIE 291
++ + L + D + + +
Sbjct: 328 YLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVESPIASCISVNSDPVEIAAKLYNLRVT 387
Query: 292 AVDIAKRLMDY 302
K+ +
Sbjct: 388 GPRGIKKTDHF 398
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 97.7 bits (242), Expect = 2e-23
Identities = 45/332 (13%), Positives = 89/332 (26%), Gaps = 58/332 (17%)
Query: 27 DQARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCL 86
D+A + +L+ E+ YD I + G E + Y Q + V
Sbjct: 68 DEAYAGSRNYYDLKDKAKELFNYDYI-IPAHQGRGAENILFPVLLKYKQKEGKAKNPVF- 125
Query: 87 IPVSAHGTNPASAQMAGMSVEPVSVRK----------DGTIDFSDLETKVKKNKETLSCL 136
I T A ++ G + K G D L+ + ++
Sbjct: 126 ISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVA 185
Query: 137 MITYPSTFG-----VFEENITDVCELIHEHGGQVYLDGANM--NAQVGLCRPGDYGS--- 186
+++ + V N+ +V E+ +HG V +D A NA R Y +
Sbjct: 186 IVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATI 245
Query: 187 -----DVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVH---PLSSIDSSIGAVSA 238
D+ T G + ++ + F + G ++
Sbjct: 246 KEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAG 305
Query: 239 AHYGSASIL------PISWAYIRRLESHYKTLFRSSRSGLV-----------AHEFVIDV 281
+ Y + R + + + V +
Sbjct: 306 RDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQI 365
Query: 282 RDFK-----------KSANIEAVDIAKRLMDY 302
+ + + AV+I L+
Sbjct: 366 PGDQFPAQAVINALYLESGVRAVEIGSFLLGR 397
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 78.0 bits (191), Expect = 8e-17
Identities = 40/334 (11%), Positives = 80/334 (23%), Gaps = 59/334 (17%)
Query: 27 DQARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCL 86
D+A + L + I GY + G E + + + + R+ +
Sbjct: 67 DEAFSGSRSYYALAESVKNIFGYQYT-IPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMV 125
Query: 87 IPVSA-HGTNPASAQMAGMSVEPVS----------VRKDGTIDFSDLETKVKKNKETLSC 135
+ T +Q+ G +V V G D LE +++
Sbjct: 126 AFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVP 185
Query: 136 LMITYPSTFG-----VFEENITDVCELIHEHGGQVYLDGANMNAQVGL----------CR 180
++ ++ V N+ + + ++ V +D A
Sbjct: 186 YIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWT 245
Query: 181 PGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHL------APFLPVHPLSSIDSSIG 234
+ P G + +K + G
Sbjct: 246 IEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGG 305
Query: 235 AVSAAHYGSASILPISW-------------AYIRRLESHYKTLFRSSRSGLV--AHEFVI 279
A A L + LE ++ A + +
Sbjct: 306 LEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGVVCQQAGGHAAFVDAGKLLP 365
Query: 280 DVRDFK-----------KSANIEAVDIAKRLMDY 302
+ + K A I AV+I L+
Sbjct: 366 HIPADQFPAQALACELYKVAGIRAVEIGSFLLGR 399
>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB
{Escherichia coli [TaxId: 562]}
Length = 450
Score = 63.7 bits (154), Expect = 5e-12
Identities = 26/275 (9%), Positives = 61/275 (22%), Gaps = 31/275 (11%)
Query: 58 SGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRK-DGT 116
+ G A + +A L+ A+ + + + +R
Sbjct: 127 ACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVELREIPMRPGQLF 186
Query: 117 IDFSDLETKVKKNKETLSCLMITYPSTFGVFEENITDVCELI---HEHGGQVYLDGANMN 173
+D + +N + + F + + D + +++D A+
Sbjct: 187 MDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGG 246
Query: 174 AQVGLCRP------GDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLS 227
P + HK P G G F +
Sbjct: 247 FLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGG 306
Query: 228 SIDSSIGAVSAAHYGSAS-------------------ILPISWAYIRRLESHYK-TLFRS 267
I + S + ++ + +
Sbjct: 307 QIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICT 366
Query: 268 SRSGLVAHEFVIDVRDFKKSANIEAVDIAKRLMDY 302
R ++D + D+++RL
Sbjct: 367 GRPDEGIPAVCFKLKD-GEDPGYTLYDLSERLRLR 400
>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 476
Score = 56.8 bits (136), Expect = 8e-10
Identities = 25/194 (12%), Positives = 64/194 (32%), Gaps = 11/194 (5%)
Query: 79 AHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKE---TLSC 135
+ V AH + + + G+ ++ + + S L+ ++++K
Sbjct: 179 VLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFF 238
Query: 136 LMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRP-----GDYGSDVSH 190
++ T +T +N+ +V + HE +++D A + G +D +
Sbjct: 239 VVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFN 298
Query: 191 LNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLSSIDSSIGAVSAAHYGSASILPIS 250
N HK + + ++ L + P+ S G+ Y +
Sbjct: 299 FNPHKWLLVNFDCSAMWVKR---RTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGR 355
Query: 251 WAYIRRLESHYKTL 264
++ ++
Sbjct: 356 RFRSLKMWFVFRMY 369
>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola
[TaxId: 549]}
Length = 456
Score = 39.8 bits (92), Expect = 3e-04
Identities = 37/275 (13%), Positives = 71/275 (25%), Gaps = 29/275 (10%)
Query: 38 ELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAH-HRNVCLIPVSAHGTNP 96
LE + E+ G+ I + G E + Q + + +G
Sbjct: 79 HLEKTVKELFGFKHI-VPTHQGRGAENLLSQLAIKPGQYVAGNMYFTTTRFHQEKNGATF 137
Query: 97 ASAQMAGMSVEPVSVRKDGTIDFSDLETKVKKNKE-----TLSCLMITYPSTFGVFEENI 151
+++ G ID + L T +K+ + + V N+
Sbjct: 138 VDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANM 197
Query: 152 TDVCELIHEHGGQVYLDGANM--NAQVGLCRPGDYGS--------------DVSHLNLHK 195
V E+ +G +++ D NA + Y + D ++ K
Sbjct: 198 RAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKK 257
Query: 196 TFCIPHGGGGPGMGPI------GVKSHLAPFLPVHPLSSIDSSIGAVSAAHYGSASILPI 249
+ GG + L+ D A+ +
Sbjct: 258 DCLVNIGGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIEH 317
Query: 250 SWAYIRRLESHYKTLFRSSRSGLVAHEFVIDVRDF 284
+R L + H +D R F
Sbjct: 318 RVKQVRYLGDKLREAGVPIVEPTGGHAVFLDARRF 352
>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas
putida [TaxId: 303]}
Length = 345
Score = 35.6 bits (80), Expect = 0.006
Identities = 31/275 (11%), Positives = 66/275 (24%), Gaps = 7/275 (2%)
Query: 29 ARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCLIP 88
G ++L +++ CEI D F +G L A+ H +
Sbjct: 33 PYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAMTPPWGNIYCHPASHINND 92
Query: 89 VSAHGTNPASAQMAGMSVEPVSVR--KDGTIDFSDLETKVKKNKETLSCLMITYPSTFGV 146
++ P + + V + +
Sbjct: 93 ECGAPEFFSNGAKLMTVDGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIY 152
Query: 147 FEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGP 206
+ I + ++ +++DG+ + +F G
Sbjct: 153 TLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLA 212
Query: 207 GMGPIGVKSHLAPFLPVHPLSSIDSSIGAVSAAHYGSASILPISWAYIRRLESHYKTLFR 266
+ + LA + + S + A + W R +
Sbjct: 213 AEAIVLFNTSLATEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLA 272
Query: 267 SSRSGLVAHEFVIDVRDFKKSANIEAVDIAKRLMD 301
GL E + ANI + ++D
Sbjct: 273 QGLEGLGGVEVLGGTE-----ANILFCRLDSAMID 302
>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain
{Lactobacillus sp., strain 30a [TaxId: 1591]}
Length = 462
Score = 35.0 bits (79), Expect = 0.008
Identities = 34/301 (11%), Positives = 67/301 (22%), Gaps = 40/301 (13%)
Query: 27 DQARGYEQLIGELETDLCEITGYDKISFQPNSGAQGEYAGLRAIQCYHQAQDAHHRNVCL 86
+E E + DK F + A+ + ++ L
Sbjct: 59 GDLLIHEGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSAL--------VSNGDLVL 110
Query: 87 IPVSAHGTNPASAQM---AGMSVEPVSVRKDGTIDFSDLETKVKKNKETLS--------- 134
+ H + SA + G I +K L+
Sbjct: 111 FDRNNHKSVYNSALAMAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAK 170
Query: 135 -----CLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGA------------NMNAQVG 177
L + T+ N +V + I + D A N + +
Sbjct: 171 WKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLI 230
Query: 178 LCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKSHLAPFLPVHPLSSID---SSIG 234
+ + ++HK +K L H +S + S+
Sbjct: 231 DDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSP 290
Query: 235 AVSAAHYGSASILPISWAYIRRLESHYKTLFRSSRSGLVAHEFVIDVRDFKKSANIEAVD 294
+ R+L +R L+ + + D
Sbjct: 291 FYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWED 350
Query: 295 I 295
Sbjct: 351 G 351
>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 388
Score = 33.3 bits (75), Expect = 0.035
Identities = 19/124 (15%), Positives = 42/124 (33%), Gaps = 9/124 (7%)
Query: 86 LIPVSAHGTNPASAQMAGMSVEPVSVRKDG--TIDFSDLETKVKKNKETLSCLMITYPST 143
LIP A + + +AG V ++ ++ +L+ V L P+
Sbjct: 114 LIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTG 173
Query: 144 FGVFEENITDVCELIHEHGGQVYLDGA------NMNAQVGLCRPGDYGSDVSHLN-LHKT 196
+ ++++ ++ + + EH V D + + +N KT
Sbjct: 174 AVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKT 233
Query: 197 FCIP 200
F +
Sbjct: 234 FAMT 237
>d2f6mb1 a.2.17.2 (B:15-118) Vacuolar protein sorting-associated
protein 28, VPS28 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 104
Score = 30.5 bits (69), Expect = 0.058
Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 10/66 (15%)
Query: 234 GAVSAAHYGSASILPISWAYIRRLESHYKTLFRSSRSGLVAHEFVIDVRDFKKSANIEAV 293
++ Y + + +L +K S + F + F + NI A
Sbjct: 46 DSIDDTQYTNT---------VDKLLKQFKVYLNSQNKEEINKHFQ-SIEAFADTYNITAS 95
Query: 294 DIAKRL 299
+ RL
Sbjct: 96 NAITRL 101
>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas
putida [TaxId: 303]}
Length = 392
Score = 32.4 bits (73), Expect = 0.058
Identities = 21/135 (15%), Positives = 38/135 (28%), Gaps = 6/135 (4%)
Query: 64 YAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGTIDFSDLE 123
A + L+ + +G A D D LE
Sbjct: 80 LASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMA-DLQALE 138
Query: 124 TKVKKNKETLSCLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGD 183
+ + P+ + +I V ++ +HG V +D L RP +
Sbjct: 139 AAMTPAT---RVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTP--YLQRPLE 193
Query: 184 YGSDVSHLNLHKTFC 198
G+D+ + K
Sbjct: 194 LGADLVVHSATKYLS 208
>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common
tobacco (Nicotiana tabacum) [TaxId: 4097]}
Length = 398
Score = 29.4 bits (65), Expect = 0.56
Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 2/67 (2%)
Query: 135 CLMITYPSTFGVFEENITDVCELIHEHGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLH 194
P+ + +I V +L HE G V +DG + G+D+ +
Sbjct: 156 LFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPL--NQKALALGADLVLHSAT 213
Query: 195 KTFCIPH 201
K +
Sbjct: 214 KFLGGHN 220
>d1xo5a_ a.39.1.5 (A:) Calcium- and integrin-binding protein, CIB
{Human (Homo sapiens) [TaxId: 9606]}
Length = 180
Score = 27.0 bits (59), Expect = 2.0
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 113 KDGTIDFSDLETKVKKNKETLSCLMI 138
+DGTI+ S+ + + ++ + S I
Sbjct: 153 RDGTINLSEFQHVISRSPDFASSFKI 178
>d2zfda1 a.39.1.5 (A:32-214) Calcineurin B-like protein 2 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 183
Score = 27.2 bits (59), Expect = 2.1
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 113 KDGTIDFSDLETKVKKNKETLSCLMITY 140
DG ID + + V ++ L + + Y
Sbjct: 148 HDGKIDKEEWRSLVLRHPSLLKNMTLQY 175
>d2q3za4 d.3.1.4 (A:146-461) Transglutaminase catalytic domain
{Human (Homo sapiens), tissue isozyme [TaxId: 9606]}
Length = 316
Score = 27.1 bits (60), Expect = 2.3
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 141 PSTFGVFEENITDVCELIHEHGGQVYLDGA 170
P FG F++ I D+C ++ + + +
Sbjct: 34 PWNFGQFQDGILDICLILLDVNPKFLKNAG 63
>d1b65a_ d.154.1.1 (A:) L-aminopeptidase D-Ala-esterase/amidase DmpA
{Ochrobactrum anthropi [TaxId: 529]}
Length = 367
Score = 26.8 bits (59), Expect = 3.5
Identities = 15/54 (27%), Positives = 22/54 (40%)
Query: 203 GGGPGMGPIGVKSHLAPFLPVHPLSSIDSSIGAVSAAHYGSASILPISWAYIRR 256
GGG GM G K V +IGA+ A++G L I+ + +
Sbjct: 173 GGGTGMITYGFKGGTGTASRVVEFGGRSFTIGALVQANHGQRDWLTIAGVPVGQ 226
>d1jmkc_ c.69.1.22 (C:) Surfactin synthetase, SrfA {Bacillus
subtilis [TaxId: 1423]}
Length = 230
Score = 26.6 bits (57), Expect = 4.0
Identities = 16/81 (19%), Positives = 22/81 (27%), Gaps = 13/81 (16%)
Query: 197 FCIPHGGGGPGMGPIGVKSHLAPFLPVHPLSSIDSSIGAVSAAHYGSASILPISWAYIRR 256
F P G M +L+ LP + L + D Y +
Sbjct: 21 FAFPPVLGYGLMY-----QNLSSRLPSYKLCAFDFIEEEDRLDRYAD--------LIQKL 67
Query: 257 LESHYKTLFRSSRSGLVAHEF 277
TLF S +A E
Sbjct: 68 QPEGPLTLFGYSAGCSLAFEA 88
>d1l5ja3 c.83.1.1 (A:373-862) Aconitase B, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 490
Score = 26.2 bits (57), Expect = 5.3
Identities = 12/64 (18%), Positives = 16/64 (25%), Gaps = 5/64 (7%)
Query: 149 ENITDVCELIHEHGGQVYLDGANMNAQV--GLCRPGD--YGSDVSHLNLHKTFCIPHGGG 204
+ + I GG G + + P G D SH P G G
Sbjct: 83 NTHHTLPDFIMNRGGVSLRPGDGVIHSWLNRMLLPDTVGTGGD-SHTRFPIGISFPAGSG 141
Query: 205 GPGM 208
Sbjct: 142 LVAF 145
>d1fpwa_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 190
Score = 25.9 bits (56), Expect = 5.5
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 113 KDGTIDFSDLETKVKKNKETLSCLMI 138
+DG I + K + + L +
Sbjct: 160 EDGYITLDEFREGSKVDPSIIGALNL 185
>d1jbaa_ a.39.1.5 (A:) Guanylate cyclase activating protein 2,
GCAP-2 {Cow (Bos taurus) [TaxId: 9913]}
Length = 189
Score = 26.0 bits (56), Expect = 5.7
Identities = 4/26 (15%), Positives = 12/26 (46%)
Query: 113 KDGTIDFSDLETKVKKNKETLSCLMI 138
DG + ++ +++K + L +
Sbjct: 160 GDGQLSLNEFVEGARRDKWVMKMLQM 185
>d1dgsa2 b.40.4.6 (A:315-400) NAD+-dependent DNA ligase {Thermus
filiformis [TaxId: 276]}
Length = 86
Score = 24.8 bits (54), Expect = 5.7
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 250 SWAYIRRLESHYKTLFRSSRSGLVAHEFVIDVRDFKKSANIEAV 293
+ +YI L+ ++G V E V+ V +++ +
Sbjct: 44 NESYIEELDIRIGDWVLVHKAGGVIPE-VLRVLKERRTGKERPI 86
>d1g8ia_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 187
Score = 25.6 bits (55), Expect = 6.0
Identities = 4/26 (15%), Positives = 10/26 (38%)
Query: 113 KDGTIDFSDLETKVKKNKETLSCLMI 138
DG + + + K + + L +
Sbjct: 157 ADGKLTLQEFQEGSKADPSIVQALSL 182
>d1zlqa1 c.94.1.1 (A:3-501) Nickel-binding periplasmic protein NikA
{Escherichia coli [TaxId: 562]}
Length = 499
Score = 25.9 bits (55), Expect = 6.9
Identities = 8/57 (14%), Positives = 21/57 (36%), Gaps = 8/57 (14%)
Query: 73 YHQAQDAHHRNVCLIPVSAHGTNP--ASAQMAGMSVEPVSVRKDGTIDFSDLETKVK 127
Y H +P+ ++ + + ++ + P++ I F ++ VK
Sbjct: 449 YRDILTRLHDEAVYLPI-SYISMMVVSKPELGNIPYAPIA----TEIPFEQIK-PVK 499
>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken
(Gallus gallus), mitochondria [TaxId: 9031]}
Length = 401
Score = 25.7 bits (55), Expect = 7.3
Identities = 18/118 (15%), Positives = 37/118 (31%), Gaps = 6/118 (5%)
Query: 58 SGAQGEYAGLRAIQCYHQAQDAHHRNVCLIPVSAHGTNPASAQMAGMSVEPVSVRKDGT- 116
LR + Q +P + G + + AG+ ++ T
Sbjct: 100 VQGISGTGSLRVGANFLQRF-FKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTC 158
Query: 117 -IDFSDLETKVKKNKETLSCLMITY---PSTFGVFEENITDVCELIHEHGGQVYLDGA 170
+DF+ + K E L+ P+ +E ++ ++ + Y D A
Sbjct: 159 SLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMA 216
>d1bhga3 c.1.8.3 (A:329-632) beta-Glucuronidase, domain 3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 304
Score = 25.7 bits (55), Expect = 7.9
Identities = 16/90 (17%), Positives = 27/90 (30%), Gaps = 1/90 (1%)
Query: 214 KSHLAPFLPVHPLSSIDSSIGAVSAAHYGSASILPISWAYIRRLESHYKTLFRSSRSGLV 273
+ + + I S GA + A + L + Y + L Y R V
Sbjct: 194 ATQFENWYKKYQKPIIQSEYGAETIAGFHQDPPLMFTEEYQKSLLEQYHLGLDQKRRKYV 253
Query: 274 AHEFVIDVRDFKKSANIEAVDI-AKRLMDY 302
E + + DF + V K +
Sbjct: 254 VGELIWNFADFMTEQSPTRVLGNKKGIFTR 283
>d1s6ca_ a.39.1.5 (A:) Kchip1, Kv4 potassium channel-interacting
protein {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 178
Score = 25.2 bits (54), Expect = 9.6
Identities = 4/24 (16%), Positives = 10/24 (41%)
Query: 113 KDGTIDFSDLETKVKKNKETLSCL 136
KDG + + +++ + L
Sbjct: 148 KDGIVTLDEFLESCQEDDNIMRSL 171
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.411
Gapped
Lambda K H
0.267 0.0433 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,110,458
Number of extensions: 49923
Number of successful extensions: 219
Number of sequences better than 10.0: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 33
Length of query: 302
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 217
Effective length of database: 1,240,546
Effective search space: 269198482
Effective search space used: 269198482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.9 bits)