BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy736
(304 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XHB|A Chain A, The Crystal Structure Of Udp-Galnac: Polypeptide Alpha-N-
Acetylgalactosaminyltransferase-T1
Length = 472
Score = 334 bits (856), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 166/283 (58%), Positives = 206/283 (72%), Gaps = 13/283 (4%)
Query: 1 CKKKSYPTFLPTTSIVIVFHNEAWSTLLRTVWSVINRSPRTLLKEIILVDDASER--VVC 58
CK K YP LPTTS+VIVFHNEAWSTLLRTV SVINRSPR +++EI+LVDDASER +
Sbjct: 19 CKTKVYPDNLPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKR 78
Query: 59 PIIDVISDQTFE-YITASDMTWGGFNWKLREKNRHKKTVVCPIIDVISDQT---FEYITA 114
P+ + ++ + G +L+ + V+ +D + T E + A
Sbjct: 79 PLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSRGQVIT-FLDAHCECTAGWLEPLLA 137
Query: 115 K------TVVCPIIDVISDQTFEYITASDMTWGGFNWKLNFRWYRVPPREMMRRGGDRSS 168
+ TVVCPIIDVISD TFEY+ SDMT+GGFNWKLNFRWY VP REM RR GDR+
Sbjct: 138 RIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKGDRTL 197
Query: 169 PLRTPTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFRVWQCGGILEIIPCSHVGH 228
P+RTPTMAGGLF+ID+DYF E+G+YD GMDIWGGENLE+SFR+WQCGG LEI+ CSHVGH
Sbjct: 198 PVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFRIWQCGGTLEIVTCSHVGH 257
Query: 229 VFRDKSPYTFPGGVSKIVLHNAARVAEVWMDEWRDFYYAMNPG 271
VFR +PYTFPGG +I+ N R+AEVWMDE+++F+Y ++PG
Sbjct: 258 VFRKATPYTFPGGTGQIINKNNRRLAEVWMDEFKNFFYIISPG 300
>pdb|2FFU|A Chain A, Crystal Structure Of Human Ppgalnact-2 Complexed With Udp
And Ea2
pdb|2FFV|A Chain A, Human Ppgalnact-2 Complexed With Manganese And Udp
pdb|2FFV|B Chain B, Human Ppgalnact-2 Complexed With Manganese And Udp
Length = 501
Score = 245 bits (625), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 131/282 (46%), Positives = 172/282 (60%), Gaps = 18/282 (6%)
Query: 1 CKKKSYPTFLPTTSIVIVFHNEAWSTLLRTVWSVINRSPRTLLKEIILVDDAS----ERV 56
C++K + LP TS+VI FHNEA S LLRTV SV+ +SP L+KEIILVDD S +
Sbjct: 56 CQRKQWRVDLPATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGA 115
Query: 57 VCPIIDVISDQTFEYITASDMTWGGFNWKLREKNRHKKTVV------CPIIDVISDQTFE 110
+ I+ + + +D G ++R + + V+ C + + E
Sbjct: 116 LLGKIEKVR------VLRNDRREGLMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPLLE 169
Query: 111 YITAKT--VVCPIIDVISDQTFEYITASDMTWGGFNWKLNFRWYRVPPREMMRRGGDRSS 168
+ VV PIIDVI+ F+Y+ AS GGF+W L F+W + P + R G+ +
Sbjct: 170 RVAEDRTRVVSPIIDVINMDNFQYVGASADLKGGFDWNLVFKWDYMTPEQRRSRQGNPVA 229
Query: 169 PLRTPTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFRVWQCGGILEIIPCSHVGH 228
P++TP +AGGLF +DK YF ELG YD MD+WGGENLE+SFRVWQCGG LEIIPCS VGH
Sbjct: 230 PIKTPMIAGGLFVMDKFYFEELGKYDMMMDVWGGENLEISFRVWQCGGSLEIIPCSRVGH 289
Query: 229 VFRDKSPYTFPGGVSKIVLHNAARVAEVWMDEWRDFYYAMNP 270
VFR + PYTFPGG + N R AEVWMDE+++FYYA P
Sbjct: 290 VFRKQHPYTFPGGSGTVFARNTRRAAEVWMDEYKNFYYAAVP 331
>pdb|2D7I|A Chain A, Crsytal Structure Of Pp-Galnac-T10 With Udp, Galnac And
Mn2+
pdb|2D7R|A Chain A, Crystal Structure Of Pp-galnac-t10 Complexed With
Galnac-ser On Lectin Domain
Length = 570
Score = 219 bits (557), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 122/287 (42%), Positives = 165/287 (57%), Gaps = 28/287 (9%)
Query: 1 CKKKSYPTFLPTTSIVIVFHNEAWSTLLRTVWSVINRSPRTLLKEIILVDDASER----- 55
C K Y LP TSI+I FHNE WS+LLRTV SV+NRSP L+ EI+LVDD S+R
Sbjct: 102 CNSKRYLETLPNTSIIIPFHNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKK 161
Query: 56 ------VVCPIIDVISDQTFEYITASDM-----TWGGFNWKLREKNRHKKTVVCPIIDVI 104
+ P + ++ + E + + M G L + P++D I
Sbjct: 162 PLEDYMALFPSVRILRTKKREGLIRTRMLGASVATGDVITFLDSHCEANVNWLPPLLDRI 221
Query: 105 SDQTFEYITAKTVVCPIIDVISDQTFEYIT-ASDMTWGGFNWKLNFRWYRVPPREMMRRG 163
+ KT+VCP+IDVI F Y T A D G F+W++ ++ +PP E+ +
Sbjct: 222 ARNR------KTIVCPMIDVIDHDDFRYETQAGDAMRGAFDWEMYYKRIPIPP-ELQK-- 272
Query: 164 GDRSSPLRTPTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFRVWQCGGILEIIPC 223
D S P +P MAGGLFA+D+ +F+ELG YD G++IWGGE E+SF+VW CGG +E IPC
Sbjct: 273 ADPSDPFESPVMAGGLFAVDRKWFWELGGYDPGLEIWGGEQYEISFKVWMCGGRMEDIPC 332
Query: 224 SHVGHVFRDKSPYTFPGGVSKIVLHNAARVAEVWMDEWRDFYYAMNP 270
S VGH++R PY P GVS + N RVAEVWMDE+ ++ Y P
Sbjct: 333 SRVGHIYRKYVPYKVPAGVS--LARNLKRVAEVWMDEYAEYIYQRRP 377
>pdb|2Z86|A Chain A, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With
Udp-Glcua And Udp
pdb|2Z86|B Chain B, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With
Udp-Glcua And Udp
pdb|2Z86|C Chain C, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With
Udp-Glcua And Udp
pdb|2Z86|D Chain D, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With
Udp-Glcua And Udp
Length = 625
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 167 SSPLRTPTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFRVWQCG 215
++P R +GG A K + + G +DE WGGE+ E +R+++ G
Sbjct: 270 NTPFRF--FSGGNVAFAKKWLFRAGWFDEEFTHWGGEDNEFGYRLYREG 316
>pdb|2Z87|A Chain A, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With Udp-
Galnac And Udp
pdb|2Z87|B Chain B, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With Udp-
Galnac And Udp
Length = 624
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 167 SSPLRTPTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFRVWQCG 215
++P R +GG A K + + G +DE WGGE+ E +R+++ G
Sbjct: 269 NTPFRF--FSGGNVAFAKKWLFRAGWFDEEFTHWGGEDNEFGYRLYREG 315
>pdb|3NRE|A Chain A, Crystal Structure Of A Putative Aldose 1-Epimerase (B2544)
From Escherichia Coli K12 At 1.59 A Resolution
pdb|3NRE|B Chain B, Crystal Structure Of A Putative Aldose 1-Epimerase (B2544)
From Escherichia Coli K12 At 1.59 A Resolution
pdb|3NRE|C Chain C, Crystal Structure Of A Putative Aldose 1-Epimerase (B2544)
From Escherichia Coli K12 At 1.59 A Resolution
pdb|3NRE|D Chain D, Crystal Structure Of A Putative Aldose 1-Epimerase (B2544)
From Escherichia Coli K12 At 1.59 A Resolution
Length = 291
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 236 YTFPGGVSKIVLHNAARVAEVWMDEWRDFYYAMNPGKSASVSTCAAHFRMLSYSSWFSGS 295
YT G K+ + + V E + WRD + PGK + V+T A+ F ++ +++ SG+
Sbjct: 5 YTLSHGSLKLDVSDQGGVIEGF---WRDTTPLLRPGKKSGVATDASCFPLVPFANRVSGN 61
>pdb|3K1D|A Chain A, Crystal Structure Of Glycogen Branching Enzyme Synonym:
1,4- Glucan:1,4-Alpha-D-Glucan 6-Glucosyl-Transferase
From Mycob Tuberculosis H37rv
Length = 722
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 29/70 (41%)
Query: 64 ISDQTFEYITASDMTWGGFNWKLREKNRHKKTVVCPIIDVISDQTFEYITAKTVVCPIID 123
+ QT +T+SD TWG +W R+ +V ++ + + + D
Sbjct: 212 VPPQTASRVTSSDYTWGDDDWMAGRALRNPVNEAMSTYEVHLGSWRPGLSYRQLARELTD 271
Query: 124 VISDQTFEYI 133
I DQ F ++
Sbjct: 272 YIVDQGFTHV 281
>pdb|3T61|A Chain A, Crystal Structure Of A Gluconokinase From Sinorhizobium
Meliloti 1021
pdb|3T61|B Chain B, Crystal Structure Of A Gluconokinase From Sinorhizobium
Meliloti 1021
Length = 202
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 220 IIPCSHVGHVFRDKSPYTFPGGVSKIVLHNAARV 253
++ CS + +RDK + PGG++ + LH + V
Sbjct: 90 VVSCSALKRSYRDKLRESAPGGLAFVFLHGSESV 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,870,711
Number of Sequences: 62578
Number of extensions: 414254
Number of successful extensions: 1032
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1012
Number of HSP's gapped (non-prelim): 17
length of query: 304
length of database: 14,973,337
effective HSP length: 98
effective length of query: 206
effective length of database: 8,840,693
effective search space: 1821182758
effective search space used: 1821182758
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)