RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy736
(304 letters)
>gnl|CDD|133004 cd02510, pp-GalNAc-T, pp-GalNAc-T initiates the formation of
mucin-type O-linked glycans. UDP-GalNAc: polypeptide
alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T)
initiate the formation of mucin-type, O-linked glycans
by catalyzing the transfer of
alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to
hydroxyl groups of Ser or Thr residues of core proteins
to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These
enzymes are type II membrane proteins with a GT-A type
catalytic domain and a lectin domain located on the
lumen side of the Golgi apparatus. In human, there are
15 isozymes of pp-GalNAc-Ts, representing the largest of
all glycosyltransferase families. Each isozyme has
unique but partially redundant substrate specificity for
glycosylation sites on acceptor proteins.
Length = 299
Score = 316 bits (812), Expect = e-108
Identities = 140/288 (48%), Positives = 175/288 (60%), Gaps = 53/288 (18%)
Query: 14 SIVIVFHNEAWSTLLRTVWSVINRSPRTLLKEIILVDDASERVVCPIIDVISDQTFEYIT 73
S++I+FHNEA STLLRTV SVINR+P LLKEIILVDD S++ + EY
Sbjct: 1 SVIIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDK------PELKLLLEEYYK 54
Query: 74 ASDMTWGGFNWK---LREKNRH-------------KKTVV------C--------PIIDV 103
+ K LR K R V+ C P++
Sbjct: 55 K-------YLPKVKVLRLKKREGLIRARIAGARAATGDVLVFLDSHCEVNVGWLEPLLAR 107
Query: 104 ISDQTFEYITAKTVVCPIIDVISDQTFEYITASDMTWGGFNWKLNFRWYRVPPREMMRRG 163
I++ KTVVCPIIDVI TFEY +S GGF+W L+F+W +P E RR
Sbjct: 108 IAENR------KTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPEEE--RRR 159
Query: 164 GDRSSPLRTPTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFRVWQCGGILEIIPC 223
++P+R+PTMAGGLFAID+++F ELG YDEGMDIWGGENLE+SF+VWQCGG +EI+PC
Sbjct: 160 ESPTAPIRSPTMAGGLFAIDREWFLELGGYDEGMDIWGGENLELSFKVWQCGGSIEIVPC 219
Query: 224 SHVGHVFRDK-SPYTFPGGVSKIVLHNAARVAEVWMDEWRDFYYAMNP 270
S VGH+FR K PYTFPGG VL N RVAEVWMDE+++++Y P
Sbjct: 220 SRVGHIFRRKRKPYTFPGGSG-TVLRNYKRVAEVWMDEYKEYFYKARP 266
>gnl|CDD|215980 pfam00535, Glycos_transf_2, Glycosyl transferase family 2.
Diverse family, transferring sugar from UDP-glucose,
UDP-N-acetyl- galactosamine, GDP-mannose or
CDP-abequose, to a range of substrates including
cellulose, dolichol phosphate and teichoic acids.
Length = 168
Score = 44.0 bits (104), Expect = 2e-05
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 14 SIVIVFHNEAWSTLLRTVWSVINRSPRTLLKEIILVDDAS 53
S++I +NE L T+ S++N++ EII+VDD S
Sbjct: 1 SVIIPTYNEE-KYLEETLESLLNQTY--KNFEIIVVDDGS 37
>gnl|CDD|217196 pfam02709, Glyco_transf_7C, N-terminal domain of
galactosyltransferase. This is the N-terminal domain of
a family of galactosyltransferases from a wide range of
Metazoa with three related galactosyltransferases
activities, all three of which are possessed by one
sequence in some cases. EC:2.4.1.90, N-acetyllactosamine
synthase; EC:2.4.1.38,
Beta-N-acetylglucosaminyl-glycopeptide beta-1,4-
galactosyltransferase; and EC:2.4.1.22 Lactose synthase.
Note that N-acetyllactosamine synthase is a component of
Lactose synthase along with alpha-lactalbumin, in the
absence of alpha-lactalbumin EC:2.4.1.90 is the
catalyzed reaction.
Length = 78
Score = 37.6 bits (88), Expect = 6e-04
Identities = 13/55 (23%), Positives = 24/55 (43%)
Query: 170 LRTPTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFRVWQCGGILEIIPCS 224
L GG+ A K+ F ++ + WGGE+ ++ R+ G +E +
Sbjct: 14 LPYKGYFGGVLAFSKEDFLKVNGFSNNFWGWGGEDDDLYARLLLAGLKIERPKFA 68
>gnl|CDD|220577 pfam10111, Glyco_tranf_2_2, Glycosyltransferase like family 2.
Members of this family of prokaryotic proteins include
putative glucosyltransferase, which are involved in
bacterial capsule biosynthesis.
Length = 278
Score = 39.3 bits (92), Expect = 0.001
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 175 MAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFRVWQCGGILEIIP 222
+A I++D+F ++G +DE GGE+ E+ +R+
Sbjct: 165 LASSCILINRDFFLKIGGFDENFRGHGGEDFELLYRLLLYYKKFPPPK 212
>gnl|CDD|133035 cd04192, GT_2_like_e, Subfamily of Glycosyltransferase Family GT2
of unknown function. GT-2 includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. Glycosyltransferases have been
classified into more than 90 distinct sequence based
families.
Length = 229
Score = 38.8 bits (91), Expect = 0.001
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 14/61 (22%)
Query: 15 IVIVFHNEAWSTLLRTVWSVINRS-PRTLLKEIILVDDASERVVCPIIDVISDQTFEYIT 73
+VI NEA L R + S+ P+ E+ILVDD S D T + +
Sbjct: 1 VVIAARNEA-ENLPRLLQSLSALDYPKEKF-EVILVDDHST-----------DGTVQILE 47
Query: 74 A 74
Sbjct: 48 F 48
>gnl|CDD|226577 COG4092, COG4092, Predicted glycosyltransferase involved in capsule
biosynthesis [Cell envelope biogenesis, outer membrane].
Length = 346
Score = 34.5 bits (79), Expect = 0.056
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 178 GLFAIDKDYFYELGSYDEGMDIWGGENLEMSFRVWQCGGILEIIPCSHVGHV-FRDKSPY 236
+F I++ F G YDE G E+ E R+ L ++ +H+ + R S
Sbjct: 180 NIFLINRRMFSLTGGYDERFRGHGSEDFEFLTRLGLYIKNLPMLTKNHLYPLDERFFSSR 239
Query: 237 TFPG 240
+ G
Sbjct: 240 PYSG 243
>gnl|CDD|222273 pfam13632, Glyco_trans_2_3, Glycosyl transferase family group 2.
Members of this family of prokaryotic proteins include
putative glucosyltransferases, which are involved in
bacterial capsule biosynthesis.
Length = 194
Score = 33.1 bits (76), Expect = 0.097
Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 7/73 (9%)
Query: 166 RSSPLRTPTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFRVWQCGGILEIIPCSH 225
R + G + E+G +DE E+ + + R+ + G + +P
Sbjct: 63 REALGGVLPSVGSGALFRRSALQEVGGFDESSV---SEDFDFALRLRRAGYRVRFVP--- 116
Query: 226 VGHVFRDKSPYTF 238
+KSP TF
Sbjct: 117 -ESGVYEKSPPTF 128
>gnl|CDD|151991 pfam11555, Inhibitor_Mig-6, EGFR receptor inhibitor Mig-6. When
the kinase domain of EGFR binds to segment one of
Mitogen induced gene 6 (Mig-6), EGFR becomes inactive
due to the conformation it adopts which is Src/CDK like.
The binding of the two proteins prevents EGFR acting as
a cyclin-like activator for other kinase domains.The
structure of Mig-6(1) consists of alpha helices-G and -H
with a polar surface and hydrophobic residues for
interactions with EGFR. A critical step for the
activation of EGFR is the formation of an asymmetric
dimer involving the kinase domains of the protein. Since
Mig-6 binds to the kinase domain it blocks this process
and EGFR becomes inactive.
Length = 58
Score = 30.7 bits (69), Expect = 0.098
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Query: 153 RVPPREMMRRGGDRS-SPLRTPTMAGGL------FAIDKDY 186
+VPPRE + G R+ SP PT G+ FA D Y
Sbjct: 4 KVPPREPLSPPGSRTPSPKSLPTYPNGVMPTTQSFASDPKY 44
>gnl|CDD|133045 cd06423, CESA_like, CESA_like is the cellulose synthase
superfamily. The cellulose synthase (CESA) superfamily
includes a wide variety of glycosyltransferase family 2
enzymes that share the common characteristic of
catalyzing the elongation of polysaccharide chains. The
members include cellulose synthase catalytic subunit,
chitin synthase, glucan biosynthesis protein and other
families of CESA-like proteins. Cellulose synthase
catalyzes the polymerization reaction of cellulose, an
aggregate of unbranched polymers of beta-1,4-linked
glucose residues in plants, most algae, some bacteria
and fungi, and even some animals. In bacteria, algae and
lower eukaryotes, there is a second unrelated type of
cellulose synthase (Type II), which produces acylated
cellulose, a derivative of cellulose. Chitin synthase
catalyzes the incorporation of GlcNAc from substrate
UDP-GlcNAc into chitin, which is a linear homopolymer of
beta-(1,4)-linked GlcNAc residues and Glucan
Biosynthesis protein catalyzes the elongation of
beta-1,2 polyglucose chains of Glucan.
Length = 180
Score = 32.2 bits (74), Expect = 0.18
Identities = 36/215 (16%), Positives = 70/215 (32%), Gaps = 71/215 (33%)
Query: 15 IVIVFHNEAWSTLLRTVWSVIN-RSPRTLLKEIILVDDASERVVCPIIDVISDQTFEYIT 73
I++ +NE + + RT+ S++ P+ E+I+VDD S +D T E +
Sbjct: 1 IIVPAYNEE-AVIERTIESLLALDYPK---LEVIVVDDGS-----------TDDTLEILE 45
Query: 74 ASDMTWGGFNWKLREKNRHKK-------------TVVCPIID---VISDQTFEYITA--- 114
+ +R+K K +V ++D ++ + +
Sbjct: 46 ELAALYIRRVLVVRDKENGGKAGALNAGLRHAKGDIVV-VLDADTILEPDALKRLVVPFF 104
Query: 115 --KTV--VCPIIDVISD--------QTFEYITASDMTWGGFNWKLNFRWYRVPPREMMRR 162
V V + V + Q EY+ +R + RR
Sbjct: 105 ADPKVGAVQGRVRVRNGSENLLTRLQAIEYL----------------SIFR-----LGRR 143
Query: 163 GGDRSSPLRTPTMAGGLFAIDKDYFYELGSYDEGM 197
++G A ++ E+G +DE
Sbjct: 144 AQSALG--GVLVLSGAFGAFRREALREVGGWDEDT 176
>gnl|CDD|132997 cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A
(GT-A) includes diverse families of glycosyl
transferases with a common GT-A type structural fold.
Glycosyltransferases (GTs) are enzymes that synthesize
oligosaccharides, polysaccharides, and glycoconjugates
by transferring the sugar moiety from an activated
nucleotide-sugar donor to an acceptor molecule, which
may be a growing oligosaccharide, a lipid, or a
protein. Based on the stereochemistry of the donor and
acceptor molecules, GTs are classified as either
retaining or inverting enzymes. To date, all GT
structures adopt one of two possible folds, termed GT-A
fold and GT-B fold. This hierarchy includes diverse
families of glycosyl transferases with a common GT-A
type structural fold, which has two tightly associated
beta/alpha/beta domains that tend to form a continuous
central sheet of at least eight beta-strands. The
majority of the proteins in this superfamily are
Glycosyltransferase family 2 (GT-2) proteins. But it
also includes families GT-43, GT-6, GT-8, GT13 and
GT-7; which are evolutionarily related to GT-2 and
share structure similarities.
Length = 156
Score = 32.1 bits (73), Expect = 0.19
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 15 IVIVFHNEAWSTLLRTVWSVINRSPRTLLKEIILVDDAS 53
++I +NE L R + S++ ++ E+I+VDD S
Sbjct: 1 VIIPAYNEE-PYLERCLESLLAQTYPNF--EVIVVDDGS 36
>gnl|CDD|133022 cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member
of the Glycosyltransferase 2 superfamily. DPM1 is the
catalytic subunit of eukaryotic dolichol-phosphate
mannose (DPM) synthase. DPM synthase is required for
synthesis of the glycosylphosphatidylinositol (GPI)
anchor, N-glycan precursor, protein O-mannose, and
C-mannose. In higher eukaryotes,the enzyme has three
subunits, DPM1, DPM2 and DPM3. DPM is synthesized from
dolichol phosphate and GDP-Man on the cytosolic surface
of the ER membrane by DPM synthase and then is flipped
onto the luminal side and used as a donor substrate. In
lower eukaryotes, such as Saccharomyces cerevisiae and
Trypanosoma brucei, DPM synthase consists of a single
component (Dpm1p and TbDpm1, respectively) that
possesses one predicted transmembrane region near the C
terminus for anchoring to the ER membrane. In contrast,
the Dpm1 homologues of higher eukaryotes, namely
fission yeast, fungi, and animals, have no
transmembrane region, suggesting the existence of
adapter molecules for membrane anchoring. This family
also includes bacteria and archaea DPM1_like enzymes.
However, the enzyme structure and mechanism of function
are not well understood. The
UDP-glucose:dolichyl-phosphate glucosyltransferase
(DPG_synthase) is a transmembrane-bound enzyme of the
endoplasmic reticulum involved in protein N-linked
glycosylation. This enzyme catalyzes the transfer of
glucose from UDP-glucose to dolichyl phosphate. This
protein family belongs to Glycosyltransferase 2
superfamily.
Length = 185
Score = 32.2 bits (74), Expect = 0.22
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 12/56 (21%)
Query: 15 IVIVFHNEAWSTLLRTVWSVINRSPRTLLKEIILVDDASERVVCPIIDVISDQTFE 70
+VI +NE + V ++ EII+VDD S +D T E
Sbjct: 1 VVIPAYNEE-ENIPELVERLLAVLEEGYDYEIIVVDDGS-----------TDGTAE 44
>gnl|CDD|223539 COG0463, WcaA, Glycosyltransferases involved in cell wall
biogenesis [Cell envelope biogenesis, outer membrane].
Length = 291
Score = 31.2 bits (69), Expect = 0.68
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 9 FLPTTSIVIVFHNEAWSTLLRTVWSVINRSPRTLLKEIILVDDAS 53
+P S+VI +NE L + S++N++ + EII+VDD S
Sbjct: 1 MMPKVSVVIPTYNEE-EYLPEALESLLNQTYKDF--EIIVVDDGS 42
>gnl|CDD|234419 TIGR03965, mycofact_glyco, mycofactocin system glycosyltransferase.
Members of this protein family are putative
glycosyltransferases, members of pfam00535 (glycosyl
transferase family 2). Members appear mostly in the
Actinobacteria, where they appear to be part of a system
for converting a precursor peptide (TIGR03969) into a
novel redox carrier designated mycofactocin. A radical
SAM enzyme, TIGR03962, is a proposed to be a key
maturase for mycofactocin.
Length = 467
Score = 30.1 bits (68), Expect = 1.6
Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 181 AIDKDYFYELGSYDEGMDIWGGENLEMSFRVWQCGGILEIIPCSHVGHVFRD 232
+ + E+G +DE +++ GE++++ +R+ + GG + P + V H R
Sbjct: 235 LVRRRALLEVGGFDERLEV--GEDVDLCWRLCEAGGRVRYEPAAVVAHDHRT 284
>gnl|CDD|133029 cd04186, GT_2_like_c, Subfamily of Glycosyltransferase Family GT2
of unknown function. GT-2 includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. Glycosyltransferases have been
classified into more than 90 distinct sequence based
families.
Length = 166
Score = 29.1 bits (66), Expect = 1.8
Identities = 12/57 (21%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 172 TPTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFRVWQCGGILEIIPCSHVGH 228
P ++G + ++ F E+G +DE ++ E++++ R G + +P + + H
Sbjct: 109 GPKVSGAFLLVRREVFEEVGGFDEDFFLYY-EDVDLCLRARLAGYRVLYVPQAVIYH 164
Score = 27.5 bits (62), Expect = 5.4
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 15 IVIVFHNEAWSTLLRTVWSVINRSPRTLLKEIILVDDASE 54
I+IV +N + L + S++ ++ E+I+VD+AS
Sbjct: 1 IIIVNYN-SLEYLKACLDSLLAQTYP--DFEVIVVDNAST 37
>gnl|CDD|133016 cd02525, Succinoglycan_BP_ExoA, ExoA is involved in the
biosynthesis of succinoglycan. Succinoglycan
Biosynthesis Protein ExoA catalyzes the formation of a
beta-1,3 linkage of the second sugar (glucose) of the
succinoglycan with the galactose on the lipid carrie.
Succinoglycan is an acidic exopolysaccharide that is
important for invasion of the nodules. Succinoglycan is
a high-molecular-weight polymer composed of repeating
octasaccharide units. These units are synthesized on
membrane-bound isoprenoid lipid carriers, beginning
with galactose followed by seven glucose molecules, and
modified by the addition of acetate, succinate, and
pyruvate. ExoA is a membrane protein with a
transmembrance domain at c-terminus.
Length = 249
Score = 29.1 bits (66), Expect = 2.8
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 14 SIVIVFHNEAWSTLLRTVWSVINRSPRTLLKEIILVDDAS 53
SI+I NE + + S++N+S L EII+VD S
Sbjct: 3 SIIIPVRNEE-KYIEELLESLLNQSYPKDLIEIIVVDGGS 41
>gnl|CDD|129526 TIGR00434, cysH, phosophoadenylyl-sulfate reductase (thioredoxin).
This enzyme, involved in the assimilation of inorganic
sulfate, is designated cysH in Bacteria and MET16 in
Saccharomyces cerevisiae. Synonyms include
phosphoadenosine phosphosulfate reductase, PAPS
reductase, and PAPS reductase, thioredoxin-dependent. In
a reaction requiring reduced thioredoxin and NADPH, it
converts 3(prime)-phosphoadenylylsulfate (PAPS) to
sulfite and adenosine 3(prime),5(prime) diphosphate
(PAP). A related family of plant enzymes, scoring below
the trusted cutoff, differs in having a thioredoxin-like
C-terminal domain, not requiring thioredoxin, and in
having a preference for 5(prime)-adenylylsulfate (APS)
over PAPS [Central intermediary metabolism, Sulfur
metabolism].
Length = 212
Score = 28.6 bits (64), Expect = 3.0
Identities = 11/52 (21%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 87 REKNRHKKTVVCPIIDVISDQTFEYITAKTVVCPIIDVISDQTFEYITASDM 138
R++ + + I+++ D+ F + V P+ID ++YI A ++
Sbjct: 124 RDQGPSRANL--SILNI--DEKFGILK----VLPLIDWTWKDVYQYIDAHNL 167
>gnl|CDD|133061 cd06439, CESA_like_1, CESA_like_1 is a member of the cellulose
synthase (CESA) superfamily. This is a subfamily of
cellulose synthase (CESA) superfamily. CESA
superfamily includes a wide variety of
glycosyltransferase family 2 enzymes that share the
common characteristic of catalyzing the elongation of
polysaccharide chains. The members of the superfamily
include cellulose synthase catalytic subunit, chitin
synthase, glucan biosynthesis protein and other
families of CESA-like proteins.
Length = 251
Score = 28.7 bits (65), Expect = 3.4
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 7 PTFLPTTSIVIVFHNEAWSTLLRTVWSVINRSPRTLLKEIILVDDASE 54
P +LPT +I+I +NE + + + +++ EII+V D S
Sbjct: 25 PAYLPTVTIIIPAYNEE-AVIEAKLENLLALDYPRDRLEIIVVSDGST 71
>gnl|CDD|216800 pfam01941, AdoMet_Synthase, S-adenosylmethionine synthetase (AdoMet
synthetase). This family consists of several
archaebacterial S-adenosylmethionine synthetase C(AdoMet
synthetase or MAT) (EC 2.5.1.6). S-Adenosylmethionine
(AdoMet) occupies a central role in the metabolism of
all cells. The biological roles of AdoMet include acting
as the primary methyl group donor, as a precursor to the
polyamines, and as a progenitor of a 5'-deoxyadenosyl
radical. S-Adenosylmethionine synthetase catalyzes the
only known route of AdoMet biosynthesis. The synthetic
process occurs in a unique reaction in which the
complete triphosphate chain is displaced from ATP and a
sulfonium ion formed. MATs from various organisms
contain ~400-amino acid polypeptide chains.
Length = 396
Score = 29.0 bits (66), Expect = 3.5
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 86 LREKNRHKKTVVCPIID-VISDQTFEYITAKTVVCPII-DVISDQTFEYIT 134
LRE ++ TV +D +SD EY K + + D+ S T +
Sbjct: 201 LREGDKITLTVAAAFVDRYVSDLD-EYFEVKEELKEYVEDLASKYTDREVE 250
>gnl|CDD|240389 PTZ00374, PTZ00374, dihydroxyacetone phosphate acyltransferase;
Provisional.
Length = 1108
Score = 28.3 bits (63), Expect = 6.4
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 9/46 (19%)
Query: 22 EAWSTLLRTVWSVINRS---------PRTLLKEIILVDDASERVVC 58
+ +LLR +WS S R +IL DDA+ R C
Sbjct: 144 SSLDSLLRRLWSAAGASQALETASQQTRVRGSLVILADDATRRSAC 189
>gnl|CDD|216444 pfam01342, SAND, SAND domain. The DNA binding activity of two
proteins has been mapped to the SAND domain. The
conserved KDWK motif is necessary for DNA binding, and
it appears to be important for dimerisation. This region
is also found in the putative transcription factor RegA
from the multicellular green alga Volvox cateri. This
region of RegA is known as the VARL domain.
Length = 81
Score = 26.1 bits (58), Expect = 7.0
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 144 NWKLNFRWYRVPPREMMRRGG 164
+WK + R RE+M RGG
Sbjct: 59 DWKRSIRCGGETLRELMERGG 79
>gnl|CDD|238825 cd01647, RT_LTR, RT_LTR: Reverse transcriptases (RTs) from
retrotransposons and retroviruses which have long
terminal repeats (LTRs) in their DNA copies but not in
their RNA template. RT catalyzes DNA replication from an
RNA template, and is responsible for the replication of
retroelements. An RT gene is usually indicative of a
mobile element such as a retrotransposon or retrovirus.
RTs are present in a variety of mobile elements,
including retrotransposons, retroviruses, group II
introns, bacterial msDNAs, hepadnaviruses, and
Caulimoviruses.
Length = 177
Score = 27.2 bits (61), Expect = 8.6
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 8/56 (14%)
Query: 58 CPIIDVISDQTFE--YITASDMTWGGFNWKLREKNRHKKTVVCPIIDVISDQTFEY 111
P ID + ++ + D+ G L E++R K P +EY
Sbjct: 44 LPTIDELLEELAGAKVFSKLDLRSGYHQIPLAEESRPKTAFRTP------FGLYEY 93
>gnl|CDD|173487 PTZ00236, PTZ00236, mitochondrial import inner membrane translocase
subunit tim17; Provisional.
Length = 164
Score = 26.9 bits (60), Expect = 8.7
Identities = 15/42 (35%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 141 GGFNWKLNFRWYRVPPREMMRRGGDRSSPLRTPTMAGGLFAI 182
GGF W P E GG R P + GG FAI
Sbjct: 29 GGFIWHFLKGMRNSPKGERF-SGGFYLLRKRAPIL-GGNFAI 68
>gnl|CDD|132155 TIGR03111, glyc2_xrt_Gpos1, putative glycosyltransferase,
exosortase G-associated. Members of this protein
family are probable glycosyltransferases of family 2,
whose genes are near those for the exosortase homolog
XrtG (TIGR03110), which is restricted to Gram-positive
bacteria. Other genes in the conserved gene
neighborhood include a 6-pyruvoyl tetrahydropterin
synthase homolog (TIGR03112) and an uncharacterized
intergral membrane protein (TIGR03766).
Length = 439
Score = 27.4 bits (61), Expect = 9.5
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 2 KKKSYPTFLPTTSIVIVFHNEAWSTLLRTVWSVINRSPRTLLKEIILVDDAS 53
K+ + LP +I+I +N TL + S+ N++ L +IIL ++ S
Sbjct: 40 KRLKFIGKLPDITIIIPVYNSE-DTLFNCIESIYNQTYPIELIDIILANNQS 90
>gnl|CDD|133043 cd06421, CESA_CelA_like, CESA_CelA_like are involved in the
elongation of the glucan chain of cellulose. Family of
proteins related to Agrobacterium tumefaciens CelA and
Gluconacetobacter xylinus BscA. These proteins are
involved in the elongation of the glucan chain of
cellulose, an aggregate of unbranched polymers of
beta-1,4-linked glucose residues. They are putative
catalytic subunit of cellulose synthase, which is a
glycosyltransferase using UDP-glucose as the substrate.
The catalytic subunit is an integral membrane protein
with 6 transmembrane segments and it is postulated that
the protein is anchored in the membrane at the
N-terminal end.
Length = 234
Score = 27.2 bits (61), Expect = 10.0
Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 18/87 (20%)
Query: 11 PTTSIVIVFHNEAWSTLLRTVWSVIN-RSPRTLLKEIILVDDASERV--VCPIIDVISDQ 67
PT + I +NE + +T+ + + P L+ +L D + +
Sbjct: 1 PTVDVFIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALA--------- 51
Query: 68 TFEYITASDMTWGGFNWKLREKNRHKK 94
A G+ + R NRH K
Sbjct: 52 ------AELGVEYGYRYLTRPDNRHAK 72
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.137 0.451
Gapped
Lambda K H
0.267 0.0719 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,866,264
Number of extensions: 1506586
Number of successful extensions: 1156
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1149
Number of HSP's successfully gapped: 40
Length of query: 304
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 208
Effective length of database: 6,679,618
Effective search space: 1389360544
Effective search space used: 1389360544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (26.5 bits)