RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy736
(304 letters)
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1;
glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus
musculus} SCOP: b.42.2.1 c.68.1.17
Length = 472
Score = 264 bits (675), Expect = 9e-86
Identities = 162/288 (56%), Positives = 195/288 (67%), Gaps = 23/288 (7%)
Query: 1 CKKKSYPTFLPTTSIVIVFHNEAWSTLLRTVWSVINRSPRTLLKEIILVDDASERVVCPI 60
CK K YP LPTTS+VIVFHNEAWSTLLRTV SVINRSPR +++EI+LVDDASER
Sbjct: 19 CKTKVYPDNLPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLK- 77
Query: 61 IDVISDQTFEYITASDMT----WGGFNWKL-REKNRHKKTVVCPIIDVISDQT------- 108
Y+ + L R + + +I +
Sbjct: 78 -----RPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSRGQVITFLDAHCECTAGWL 132
Query: 109 -----FEYITAKTVVCPIIDVISDQTFEYITASDMTWGGFNWKLNFRWYRVPPREMMRRG 163
+TVVCPIIDVISD TFEY+ SDMT+GGFNWKLNFRWY VP REM RR
Sbjct: 133 EPLLARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRK 192
Query: 164 GDRSSPLRTPTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFRVWQCGGILEIIPC 223
GDR+ P+RTPTMAGGLF+ID+DYF E+G+YD GMDIWGGENLE+SFR+WQCGG LEI+ C
Sbjct: 193 GDRTLPVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFRIWQCGGTLEIVTC 252
Query: 224 SHVGHVFRDKSPYTFPGGVSKIVLHNAARVAEVWMDEWRDFYYAMNPG 271
SHVGHVFR +PYTFPGG +I+ N R+AEVWMDE+++F+Y ++PG
Sbjct: 253 SHVGHVFRKATPYTFPGGTGQIINKNNRRLAEVWMDEFKNFFYIISPG 300
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2,
protein-UDP; ppgalnact, mucin, glycosyltransferase; HET:
UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Length = 501
Score = 259 bits (663), Expect = 1e-83
Identities = 129/284 (45%), Positives = 171/284 (60%), Gaps = 22/284 (7%)
Query: 1 CKKKSYPTFLPTTSIVIVFHNEAWSTLLRTVWSVINRSPRTLLKEIILVDDASERVVCPI 60
C++K + LP TS+VI FHNEA S LLRTV SV+ +SP L+KEIILVDD S
Sbjct: 56 CQRKQWRVDLPATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDG- 114
Query: 61 IDVISDQTFEYITASDMTWGGFNWKLREKNRHKKTVVC--------------PIIDVISD 106
++ + +D G ++R + + V+ P+++ +++
Sbjct: 115 -ALLGKIEKVRVLRNDRREGLMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPLLERVAE 173
Query: 107 QTFEYITAKTVVCPIIDVISDQTFEYITASDMTWGGFNWKLNFRWYRVPPREMMRRGGDR 166
VV PIIDVI+ F+Y+ AS GGF+W L F+W + P + R G+
Sbjct: 174 DR------TRVVSPIIDVINMDNFQYVGASADLKGGFDWNLVFKWDYMTPEQRRSRQGNP 227
Query: 167 SSPLRTPTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFRVWQCGGILEIIPCSHV 226
+P++TP +AGGLF +DK YF ELG YD MD+WGGENLE+SFRVWQCGG LEIIPCS V
Sbjct: 228 VAPIKTPMIAGGLFVMDKFYFEELGKYDMMMDVWGGENLEISFRVWQCGGSLEIIPCSRV 287
Query: 227 GHVFRDKSPYTFPGGVSKIVLHNAARVAEVWMDEWRDFYYAMNP 270
GHVFR + PYTFPGG + N R AEVWMDE+++FYYA P
Sbjct: 288 GHVFRKQHPYTFPGGSGTVFARNTRRAAEVWMDEYKNFYYAAVP 331
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil,
rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens}
PDB: 2d7r_A*
Length = 570
Score = 242 bits (618), Expect = 3e-76
Identities = 120/288 (41%), Positives = 162/288 (56%), Gaps = 28/288 (9%)
Query: 1 CKKKSYPTFLPTTSIVIVFHNEAWSTLLRTVWSVINRSPRTLLKEIILVDDASERVVC-- 58
C K Y LP TSI+I FHNE WS+LLRTV SV+NRSP L+ EI+LVDD S+R
Sbjct: 102 CNSKRYLETLPNTSIIIPFHNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKK 161
Query: 59 ---------PIIDVISDQTFEYITASDMTW-----GGFNWKLREKNRHKKTVVCPIIDVI 104
P + ++ + E + + M G L + P++D I
Sbjct: 162 PLEDYMALFPSVRILRTKKREGLIRTRMLGASVATGDVITFLDSHCEANVNWLPPLLDRI 221
Query: 105 SDQTFEYITAKTVVCPIIDVISDQTFEYITAS-DMTWGGFNWKLNFRWYRVPPREMMRRG 163
+ KT+VCP+IDVI F Y T + D G F+W++ ++ +PP +
Sbjct: 222 ARN------RKTIVCPMIDVIDHDDFRYETQAGDAMRGAFDWEMYYKRIPIPPEL---QK 272
Query: 164 GDRSSPLRTPTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFRVWQCGGILEIIPC 223
D S P +P MAGGLFA+D+ +F+ELG YD G++IWGGE E+SF+VW CGG +E IPC
Sbjct: 273 ADPSDPFESPVMAGGLFAVDRKWFWELGGYDPGLEIWGGEQYEISFKVWMCGGRMEDIPC 332
Query: 224 SHVGHVFRDKSPYTFPGGVSKIVLHNAARVAEVWMDEWRDFYYAMNPG 271
S VGH++R PY P GVS + N RVAEVWMDE+ ++ Y P
Sbjct: 333 SRVGHIYRKYVPYKVPAGVS--LARNLKRVAEVWMDEYAEYIYQRRPE 378
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA
UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Length = 625
Score = 53.0 bits (127), Expect = 6e-08
Identities = 45/319 (14%), Positives = 87/319 (27%), Gaps = 45/319 (14%)
Query: 2 KKKSYPTFLPTTSIVIVFHNEAWSTLLRTVWSVIN-RSPRTLLKEIILVDDASERVVCPI 60
+ SIVI +N A L T+ + N ++ E+I+ DD S+ + I
Sbjct: 84 DYPRKQLIIDGLSIVIPTYNRA-KILAITLACLCNQKTIYDY--EVIVADDGSKENIEEI 140
Query: 61 IDVISDQ--------------------------TFEYIT--ASDMTW--GGFNWKLREKN 90
+ + Y+ DM +
Sbjct: 141 VREFESLLNIKYVRQKDYGYQLCAVRNLGLRAAKYNYVAILDCDMAPNPLWVQSYMELLA 200
Query: 91 RHKKTVVCPIIDVISDQTFEYITAKTVVCPIIDVISDQTFEYITASDMTWGGFNWKLNFR 150
+ I Y+ D +S ++ +T K+
Sbjct: 201 VDDNVALIGPRKYIDTSKHTYL----------DFLSQKSLINEIPEIITNNQVAGKVEQN 250
Query: 151 WYRVPPREMMRRGGD-RSSPLRTPTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSF 209
E + + R +GG A K + + G +DE WGGE+ E +
Sbjct: 251 KSVDWRIEHFKNTDNLRLCNTPFRFFSGGNVAFAKKWLFRAGWFDEEFTHWGGEDNEFGY 310
Query: 210 RVWQCGGILEIIPCSHVGHVFRDKSPYTFPGGVSKIVLHNAARVAEVWMDEWRDFYYAMN 269
R+++ G + + H K + + + ++ +
Sbjct: 311 RLYREGCYFRSVEGAMAYHQEPPGKENETDRAAGKNITVQLLQQKVPYFYRKKEKIESAT 370
Query: 270 PGKSASVSTCAAHFRMLSY 288
+ VS + Y
Sbjct: 371 LKRVPLVSIYIPAYNCSKY 389
Score = 29.9 bits (67), Expect = 1.0
Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 14/72 (19%)
Query: 1 CKKKSYPTFLPTTSIVIVFHNEAWSTLLRTVWSVINRSPRTLLKEIILVDDASERVVCPI 60
+ + +P SI I +N + ++R V S +N++ L E+ + DD S
Sbjct: 365 KIESATLKRVPLVSIYIPAYNCSK-YIVRCVESALNQTITDL--EVCICDDGS------- 414
Query: 61 IDVISDQTFEYI 72
+D T +
Sbjct: 415 ----TDDTLRIL 422
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 0.003
Identities = 31/222 (13%), Positives = 68/222 (30%), Gaps = 62/222 (27%)
Query: 32 W-SVIN-RSPRTLLKEIILVDDASERVVCPIIDVISDQTFEYITASDMTWGGFNWKLREK 89
W ++ N SP T+L+ +L + ID ++ + + +LR
Sbjct: 186 WLNLKNCNSPETVLE--MLQK------LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 90 NRHKKTVVCPII--DVISDQTFEY--ITAKTVV----CPIIDVISDQTFEYITASDMTWG 141
+ K C ++ +V + + + ++ K ++ + D +S T +I+ +
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 142 GF----------NWKLNFRWYRVPPR-------------EMMRRGGDRSSPLR------- 171
+ L+ R +P E +R G +
Sbjct: 298 -LTPDEVKSLLLKY-LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 172 TPTMAGGLFAID----KDYFYELGSYDEGMDI--------WG 201
T + L ++ + F L + I W
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397
Score = 27.1 bits (59), Expect = 8.2
Identities = 24/148 (16%), Positives = 45/148 (30%), Gaps = 39/148 (26%)
Query: 18 VFHNEAW--STLLRTVWS-VINRSPRTLLKEII---LVD-DASERVVCPIIDVISDQTFE 70
VF A + LL +W VI ++ ++ LV+ E + I E
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI-----SIPSIYLE 434
Query: 71 YITASDMTWGGFNWKLREKNRHKKTVVCPIIDVISDQTFEYITAKTVVCPIIDVISDQTF 130
+ E H+ I+D + + ++ P +D +
Sbjct: 435 LKVKLE----------NEYALHRS-----IVD--HYNIPKTFDSDDLIPPYLD---QYFY 474
Query: 131 EYI----TASDMT--WGGF-NWKLNFRW 151
+I + F L+FR+
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDFRF 502
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 0.004
Identities = 26/103 (25%), Positives = 37/103 (35%), Gaps = 32/103 (31%)
Query: 2 KKKSYPTFLPTTSIVIVFHNEAWSTLLRTVWSVINRSPRTLLKEIILVDDASERVVCPII 61
K K FLP S FH S LL +IN+ L+K + + ++ P+
Sbjct: 413 KLKFSNRFLPVAS---PFH----SHLLVPASDLINKD---LVKNNVSFNAKDIQI--PVY 460
Query: 62 DVISDQTFEYITASDMTWGGFNWKLREKNRHKKTVVCPIIDVI 104
D TF SD LR ++ I+D I
Sbjct: 461 D-----TF---DGSD---------LRV---LSGSISERIVDCI 483
Score = 37.3 bits (86), Expect = 0.007
Identities = 44/283 (15%), Positives = 83/283 (29%), Gaps = 102/283 (36%)
Query: 12 TTSIVIVF----HNEAWSTLLRTVWSVINRSPRTLLKEIILVDDASERVVCPIIDVISDQ 67
+V +F + + + LR ++ + L+ ++I S + +I D
Sbjct: 153 NAQLVAIFGGQGNTDDYFEELRDLYQ----TYHVLVGDLI---KFSAETLSELIRTTLDA 205
Query: 68 TFEYITASD-MTWGGFNWKLREKNRHKKTVVCPIIDVISDQTFEYITAKTVVCPIIDVIS 126
+ + + W L + P D+ +Y+ + + CP+I VI
Sbjct: 206 EKVFTQGLNILEW------LENPSNT------P------DK--DYLLSIPISCPLIGVI- 244
Query: 127 DQTFEYITASDMTWGGFNWKLNFRWYRVPPREMMRRGGDRSSPLRTPTMAG-GL---FAI 182
Q Y+ + + GF P E+ L+ T GL AI
Sbjct: 245 -QLAHYVVTAKLL--GFT-----------PGELRSY-------LKGATGHSQGLVTAVAI 283
Query: 183 ----DKDYFYELGSYDEGMDIWGGENLEMSF----RVWQCGGILEIIP-----CSHVG-- 227
+ F+ + + + F R ++ + P
Sbjct: 284 AETDSWESFFVSVR----------KAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG 333
Query: 228 --------------HVFR--DKSPYTFPGG--VSKIVLHNAAR 252
V +K+ P G V I L N A+
Sbjct: 334 VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE-ISLVNGAK 375
Score = 31.9 bits (72), Expect = 0.30
Identities = 34/175 (19%), Positives = 53/175 (30%), Gaps = 77/175 (44%)
Query: 157 REMMRRGGDR--SSPLRTPTMAG--GLFAI------DKDYFYEL---------------- 190
R M +R D+ +S L G L AI DYF EL
Sbjct: 130 RIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIK 189
Query: 191 -----------------GSYDEGMDI--W--------GGENL---EMSFRVWQCGGILEI 220
+ +G++I W + L +S ++ +
Sbjct: 190 FSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC------PLIGV 243
Query: 221 IPCSHVGHVFRDKSPYTFPG----------GVSKIVLHNAARVAEVWMDEWRDFY 265
I +H V +T PG G S+ ++ A +AE D W F+
Sbjct: 244 IQLAHY-VVTAKLLGFT-PGELRSYLKGATGHSQGLV-TAVAIAET--DSWESFF 293
Score = 29.2 bits (65), Expect = 2.1
Identities = 14/95 (14%), Positives = 22/95 (23%), Gaps = 37/95 (38%)
Query: 236 YT-FPG-GVSKIVLHNAARVAEVWMDEWRDFYYAMNPGKSASVSTCAAHFRMLS------ 287
F G G + + + +E RD Y + + A L
Sbjct: 157 VAIFGGQGNT-----------DDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDA 205
Query: 288 ---YS------SWFSG-------SILASC--SYVL 304
++ W L S S L
Sbjct: 206 EKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL 240
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function;
HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB:
3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Length = 329
Score = 31.6 bits (71), Expect = 0.30
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 13/60 (21%)
Query: 11 PTTSIVIVFHNEAWSTLLRTVWSVINRSPRTLLKEIILVDDASERVVCPIIDVISDQTFE 70
T S+V+ +E T+ + I+ L+ E+I++D S +D T
Sbjct: 48 RTISVVLPALDEE-DTIGSVI-DSISPLVDGLVDELIVLDSGS-----------TDDTEI 94
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA);
glycosyltransferase, transferase; 1.50A {Bacillus
subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A*
1qgs_A*
Length = 255
Score = 30.8 bits (70), Expect = 0.45
Identities = 10/62 (16%), Positives = 31/62 (50%), Gaps = 14/62 (22%)
Query: 11 PTTSIVIVFHNEAWSTLLRTVWSVINRSPRTLLKEIILVDDASERVVCPIIDVISDQTFE 70
P S+++ +N++ + +++ S+++++ E+ ++DD S +++T
Sbjct: 1 PKVSVIMTSYNKS-DYVAKSISSILSQTFSDF--ELFIMDDNS-----------NEETLN 46
Query: 71 YI 72
I
Sbjct: 47 VI 48
>3lw6_A FI08434P, beta-4-galactosyltransferase 7; protein-Mn-UDP complex,
glycosyltransferase; HET: UDP; 1.81A {Drosophila
melanogaster}
Length = 287
Score = 30.9 bits (69), Expect = 0.49
Identities = 16/126 (12%), Positives = 34/126 (26%), Gaps = 5/126 (3%)
Query: 90 NRHKKTVVCPIIDVISDQTFEYITAKTVVCPIIDVISDQTFEYITASDMTWGGFNWKLNF 149
R +++ + F + V + D + D+
Sbjct: 78 KRQGVAHHIFVLNQVDRFRFNRASLINVGFQFASDVYDYIA--MHDVDLLP---LNDNLL 132
Query: 150 RWYRVPPREMMRRGGDRSSPLRTPTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSF 209
Y + G GG+ + +++F ++ WG E+ E
Sbjct: 133 YEYPSSLGPLHIAGPKLHPKYHYDNFVGGILLVRREHFKQMNGMSNQYWGWGLEDDEFFV 192
Query: 210 RVWQCG 215
R+ G
Sbjct: 193 RIRDAG 198
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus,
structural protein; HET: ATP; 3.40A {Saccharomyces
cerevisiae}
Length = 498
Score = 29.6 bits (66), Expect = 1.3
Identities = 8/14 (57%), Positives = 8/14 (57%)
Query: 288 YSSWFSGSILASCS 301
Y SW GSIL S
Sbjct: 459 YQSWLGGSILTSLG 472
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein;
2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B*
2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B*
3dxm_B* 3rse_B 2p9k_B*
Length = 394
Score = 29.3 bits (66), Expect = 1.8
Identities = 3/14 (21%), Positives = 7/14 (50%)
Query: 288 YSSWFSGSILASCS 301
+ + G++LA
Sbjct: 352 HMVFLGGAVLADIM 365
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD,
DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Length = 440
Score = 29.1 bits (66), Expect = 1.9
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 234 SPY-TFPGGVSKIVLHNAARVAEVWMDE--WRDFYY 266
SP+ F G +S + + E ++ E WRDF+
Sbjct: 217 SPHLKF-GTISMREAYYTQKGKEEFVRELYWRDFFT 251
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to
bistramide A, structural protein; HET: HIC ATP BID;
1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1
PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1*
1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0*
1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A*
...
Length = 375
Score = 28.5 bits (64), Expect = 2.5
Identities = 10/14 (71%), Positives = 10/14 (71%)
Query: 288 YSSWFSGSILASCS 301
YS W GSILAS S
Sbjct: 337 YSVWIGGSILASLS 350
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET:
PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A*
2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A*
1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B*
1nkh_B* 1nqi_B* 1nwg_B* ...
Length = 287
Score = 28.3 bits (62), Expect = 3.3
Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 3/114 (2%)
Query: 103 VISDQTFEYITAKTVVCPI--IDVISDQTFEYITASDMTWGGFNWKLNFRWYRVPPREMM 160
+ +Q + I + + + + + D + SD+ N N PR +
Sbjct: 101 YVINQAGDTIFNRAKLLNVGFQEALKDYDYTCFVFSDVDLIPMN-DHNAYRCFSQPRHIS 159
Query: 161 RRGGDRSSPLRTPTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFRVWQC 214
L GG+ A+ K F + + WGGE+ ++ R+
Sbjct: 160 VAMDKFGFSLPYVQYFGGVSALSKQQFLTINGFPNNYWGWGGEDDDIFNRLVFR 213
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural
protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB:
1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A*
2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A
Length = 418
Score = 28.1 bits (63), Expect = 4.0
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 288 YSSWFSGSILAS 299
Y+ WF GS+LAS
Sbjct: 375 YAVWFGGSMLAS 386
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase,
mannose, transferase, stereoselectivity; HET: FLC;
1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB:
2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A*
2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Length = 397
Score = 27.8 bits (61), Expect = 4.8
Identities = 14/62 (22%), Positives = 20/62 (32%), Gaps = 15/62 (24%)
Query: 13 TSIVIVFHNEAWSTLLRTVWSVINRSPRTLLKEIILVDDASERVVCPIIDVISDQTFEYI 72
+ +V F +E LL V V PR +L DQT+E +
Sbjct: 2 SLVVFPFKHEHPEVLLHNV-RVAAAHPRV---HEVLCIGYE-----------RDQTYEAV 46
Query: 73 TA 74
Sbjct: 47 ER 48
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding,
cytoskeleton, nucleot binding, WD repeat; HET: ATP;
3.78A {Schizosaccharomyces pombe}
Length = 427
Score = 27.8 bits (62), Expect = 5.0
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 288 YSSWFSGSILAS 299
+ WF GS+LA
Sbjct: 384 NAVWFGGSLLAQ 395
>2q7r_A Arachidonate 5-lipoxygenase-activating protein; flap, mapeg,
membrane protein, lipid transport; HET: 3CS; 4.00A
{Homo sapiens} SCOP: f.56.1.1 PDB: 2q7m_A*
Length = 161
Score = 26.9 bits (59), Expect = 5.5
Identities = 5/30 (16%), Positives = 12/30 (40%)
Query: 5 SYPTFLPTTSIVIVFHNEAWSTLLRTVWSV 34
+YPTFL + ++ + ++
Sbjct: 63 AYPTFLAVLWSAGLLCSQVPAAFAGLMYLF 92
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic
membrane protein, structural protein; 2.70A
{Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A*
3l7l_A* 3l7m_A*
Length = 729
Score = 27.6 bits (61), Expect = 5.5
Identities = 7/43 (16%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 11 PTTSIVIVFHNEAWSTLLRTVWSVINRSPRTLLKEIILVDDAS 53
+I++ ++N + + S+ + + +I+V+D S
Sbjct: 2 NKLTIIVTYYNAE-EYITGCLESIKQQRTQDF--NLIIVNDGS 41
>3r40_A Fluoroacetate dehalogenase; FACD, defluorinase, alpha/beta
hydrolase, hydrolase; 1.05A {Rhodopseudomonas palustris}
PDB: 3r3w_A 3r3x_A 3r3v_A 3r3u_A 3r3z_A 3r41_A 3r3y_A
Length = 306
Score = 27.3 bits (61), Expect = 7.2
Identities = 8/86 (9%), Positives = 19/86 (22%), Gaps = 20/86 (23%)
Query: 141 GGFNWKLNFRWYRVPPREMMRRGGDRSSPLRTPTMA-GGLFAIDKDYFYELGSYDEGMDI 199
+R E + + + + P +A G + +
Sbjct: 216 VMCED---YRAGAYADFEHDKIDVEAGNKIPVPMLALWG----ASGIAQSAATPLDVWRK 268
Query: 200 WGGENLEMSFRVWQCGGILEIIPCSH 225
W +++ I H
Sbjct: 269 W-ASDVQ-----------GAPIESGH 282
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy
transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA
FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1
c.28.1.1
Length = 471
Score = 27.1 bits (61), Expect = 7.7
Identities = 7/15 (46%), Positives = 10/15 (66%), Gaps = 2/15 (13%)
Query: 254 AEVWMDE--WRDFYY 266
VW++E WR+FY
Sbjct: 268 GSVWLNELIWREFYR 282
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin
enzyme, photoreactivating enzyme; HET: FAD; 1.80A
{Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB:
1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Length = 484
Score = 27.2 bits (61), Expect = 8.1
Identities = 7/15 (46%), Positives = 8/15 (53%), Gaps = 2/15 (13%)
Query: 254 AEVWMDE--WRDFYY 266
VW E WR+FY
Sbjct: 277 IRVWQQELAWREFYQ 291
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein,
nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A
{Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB:
1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Length = 420
Score = 27.1 bits (61), Expect = 8.8
Identities = 8/23 (34%), Positives = 9/23 (39%), Gaps = 2/23 (8%)
Query: 246 VLHNAARVAEVWMDE--WRDFYY 266
A W+ E WRDF Y
Sbjct: 230 AERRGGEGARKWVAELLWRDFSY 252
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.451
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,032,188
Number of extensions: 302243
Number of successful extensions: 586
Number of sequences better than 10.0: 1
Number of HSP's gapped: 582
Number of HSP's successfully gapped: 43
Length of query: 304
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 211
Effective length of database: 4,105,140
Effective search space: 866184540
Effective search space used: 866184540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (25.7 bits)