RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy736
         (304 letters)



>d1xhba2 c.68.1.17 (A:95-422) Polypeptide
           N-acetylgalactosaminyltransferase 1, N-terminal domain
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 328

 Score =  220 bits (561), Expect = 7e-71
 Identities = 162/282 (57%), Positives = 196/282 (69%), Gaps = 11/282 (3%)

Query: 1   CKKKSYPTFLPTTSIVIVFHNEAWSTLLRTVWSVINRSPRTLLKEIILVDDASERVVCPI 60
           CK K YP  LPTTS+VIVFHNEAWSTLLRTV SVINRSPR +++EI+LVDDASER     
Sbjct: 12  CKTKVYPDNLPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKR 71

Query: 61  I--DVISDQTFEYITASDMTWGGFNWKLREKNRHKKTVVCPIIDVISDQTFEYITA---- 114
                +                G      +     +  V   +D   + T  ++      
Sbjct: 72  PLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLLAR 131

Query: 115 -----KTVVCPIIDVISDQTFEYITASDMTWGGFNWKLNFRWYRVPPREMMRRGGDRSSP 169
                +TVVCPIIDVISD TFEY+  SDMT+GGFNWKLNFRWY VP REM RR GDR+ P
Sbjct: 132 IKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKGDRTLP 191

Query: 170 LRTPTMAGGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFRVWQCGGILEIIPCSHVGHV 229
           +RTPTMAGGLF+ID+DYF E+G+YD GMDIWGGENLE+SFR+WQCGG LEI+ CSHVGHV
Sbjct: 192 VRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFRIWQCGGTLEIVTCSHVGHV 251

Query: 230 FRDKSPYTFPGGVSKIVLHNAARVAEVWMDEWRDFYYAMNPG 271
           FR  +PYTFPGG  +I+  N  R+AEVWMDE+++F+Y ++PG
Sbjct: 252 FRKATPYTFPGGTGQIINKNNRRLAEVWMDEFKNFFYIISPG 293


>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS
           {Rhodothermus marinus [TaxId: 29549]}
          Length = 381

 Score = 68.1 bits (166), Expect = 1e-13
 Identities = 34/304 (11%), Positives = 70/304 (23%), Gaps = 72/304 (23%)

Query: 13  TSIVIVFHNEAWSTLLRTVWSVINRSPRTLLKEIILVDDASE-----------RVVCPII 61
           + +V  F +E    LL  V  V    PR  + E++ +    +            +     
Sbjct: 1   SLVVFPFKHEHPEVLLHNV-RVAAAHPR--VHEVLCIGYERDQTYEAVERAAPEISRATG 57

Query: 62  DVISDQTFEYITASDMTWGGFNWKLREKNRHKKT--VVCPIIDVISDQTFEYITAKTVVC 119
             +S +  E +       G            +     +      I+    ++IT      
Sbjct: 58  TPVSVRLQERLGTLRPGKGDGMNTALRYFLEETQWERIHFYDADITSFGPDWITK---AE 114

Query: 120 PIIDVISDQTFEYITASDMTWGGFNWKLNFRWYRVPPREMMRRGGDRSSPLRTPTMAGGL 179
              D        Y   +        W +    +       +       S +  P   GG 
Sbjct: 115 EAADFGYGLVRHYFPRASTD-AMITWMITRTGFA------LLWPHTELSWIEQPL--GGE 165

Query: 180 FAIDKDYFYEL-------GSYDEGMDIW-----------------GGENLEMSFR----- 210
             + ++    L          D G+D                           +      
Sbjct: 166 LLMRREVAAMLYEDERVRRRSDWGIDTLYTFVTVQQGVSIYECYIPEGKAHRLYGGLDDL 225

Query: 211 ----------VWQCGGILEIIPCSHVGHVFRDKSPYTFPGGVSKIVLHNAARVAEVWMDE 260
                     +      +   P  H       + P+  P  +++ V ++        M  
Sbjct: 226 RTMLVECFAAIQSLQHEVVGQPAIHRQ-----EHPHRVPVHIAERVGYDVEATLHRLMQH 280

Query: 261 WRDF 264
           W   
Sbjct: 281 WTPR 284


>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis
           protein SpsA {Bacillus subtilis [TaxId: 1423]}
          Length = 255

 Score = 41.3 bits (95), Expect = 7e-05
 Identities = 23/211 (10%), Positives = 69/211 (32%), Gaps = 6/211 (2%)

Query: 11  PTTSIVIVFHNEAWSTLLRTVWSVINRSPRTLLKEIILVDDASERVVCPIIDVISDQTFE 70
           P  S+++  +N++   + +++ S+++++      E+ ++DD S      +I    +    
Sbjct: 1   PKVSVIMTSYNKS-DYVAKSISSILSQTFSDF--ELFIMDDNSNEETLNVIRPFLNDNRV 57

Query: 71  YITASDMTWGGFNWKLREKNRHKKTVVCPII-DVISDQTFEYITAKTVVCPIIDVISDQT 129
               SD++      +           +     + I+  T + I     +  ++  +    
Sbjct: 58  RFYQSDISGVKERTEKTRYAALINQAIEMAEGEYITYATDDNIYMPDRLLKMVRELDTHP 117

Query: 130 FEYITASDMTWGGFNWKLNFRWYRVPPREMMRRGGDRSSPLRTPTMAGGLFAIDKDYFYE 189
            + +  S       N   +     V P   +    +    +   ++      ++K     
Sbjct: 118 EKAVIYSASKTYHLNENRDIVKETVRPAAQVTW--NAPCAIDHCSVMHRYSVLEKVKEKF 175

Query: 190 LGSYDEGMDIWGGENLEMSFRVWQCGGILEI 220
              +DE    +   +    +RV        +
Sbjct: 176 GSYWDESPAFYRIGDARFFWRVNHFYPFYPL 206


>d1pzta_ c.68.1.2 (A:) beta 1,4 galactosyltransferase (b4GalT1) {Cow
           (Bos taurus) [TaxId: 9913]}
          Length = 271

 Score = 29.2 bits (65), Expect = 0.54
 Identities = 10/39 (25%), Positives = 18/39 (46%)

Query: 177 GGLFAIDKDYFYELGSYDEGMDIWGGENLEMSFRVWQCG 215
           GG+ A+ K  F  +  +       GGE+ ++  R+   G
Sbjct: 160 GGVSALSKQQFLSINGFPNNYWGAGGEDDDIYNRLAFRG 198


>d2gtia2 d.294.1.2 (A:217-369) Nsp15, C-terminal domain {Murine
           hepatitis virus, MHV [TaxId: 11138]}
          Length = 153

 Score = 25.2 bits (55), Expect = 7.3
 Identities = 7/33 (21%), Positives = 17/33 (51%)

Query: 46  IILVDDASERVVCPIIDVISDQTFEYITASDMT 78
           I   +  S + VC +ID++ D   + + + ++ 
Sbjct: 92  ITDENSGSSKSVCTVIDLLLDDFVDIVKSLNLK 124


>d2h85a2 d.294.1.2 (A:191-345) Nsp15, C-terminal domain {SARS
           coronavirus [TaxId: 227859]}
          Length = 155

 Score = 24.8 bits (54), Expect = 9.2
 Identities = 8/33 (24%), Positives = 15/33 (45%)

Query: 46  IILVDDASERVVCPIIDVISDQTFEYITASDMT 78
           I      S +  C +ID++     E I + D++
Sbjct: 90  ITDAQTGSSKCGCSVIDLLLGDFVEIIKSQDLS 122


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.137    0.451 

Gapped
Lambda     K      H
   0.267   0.0637    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,277,606
Number of extensions: 61444
Number of successful extensions: 190
Number of sequences better than 10.0: 1
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 15
Length of query: 304
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 219
Effective length of database: 1,240,546
Effective search space: 271679574
Effective search space used: 271679574
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.4 bits)