BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy7362
         (137 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1H6F|A Chain A, Human Tbx3, A Transcription Factor Responsible For Ulnar-
           Mammary Syndrome, Bound To A Palindromic Dna Site
 pdb|1H6F|B Chain B, Human Tbx3, A Transcription Factor Responsible For Ulnar-
           Mammary Syndrome, Bound To A Palindromic Dna Site
          Length = 193

 Score = 46.2 bits (108), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 108 ECHLETKELWDKFHDLGTEMIITKTG 133
           + HLE KELWD+FH  GTEM+ITK+G
Sbjct: 6   KVHLEAKELWDQFHKRGTEMVITKSG 31


>pdb|4A04|A Chain A, Structure Of The Dna-Bound T-Box Domain Of Human Tbx1, A
           Transcription Factor Associated With The Digeorge
           Syndrome
 pdb|4A04|B Chain B, Structure Of The Dna-Bound T-Box Domain Of Human Tbx1, A
           Transcription Factor Associated With The Digeorge
           Syndrome
          Length = 203

 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 16/25 (64%), Positives = 19/25 (76%)

Query: 109 CHLETKELWDKFHDLGTEMIITKTG 133
             LE K LWD+F+ LGTEMI+TK G
Sbjct: 18  VQLEMKALWDEFNQLGTEMIVTKAG 42


>pdb|2X6U|A Chain A, Crystal Structure Of Human Tbx5 In The Dna-Free Form
 pdb|2X6V|A Chain A, Crystal Structure Of Human Tbx5 In The Dna-Bound And Dna-
           Free Form
 pdb|2X6V|B Chain B, Crystal Structure Of Human Tbx5 In The Dna-Bound And Dna-
           Free Form
          Length = 203

 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 16/23 (69%), Positives = 19/23 (82%)

Query: 111 LETKELWDKFHDLGTEMIITKTG 133
           L  +ELW KFH++GTEMIITK G
Sbjct: 10  LHERELWLKFHEVGTEMIITKAG 32


>pdb|1XBR|A Chain A, T Domain From Xenopus Laevis Bound To Dna
 pdb|1XBR|B Chain B, T Domain From Xenopus Laevis Bound To Dna
          Length = 184

 Score = 31.2 bits (69), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 12/23 (52%), Positives = 17/23 (73%)

Query: 111 LETKELWDKFHDLGTEMIITKTG 133
           LE ++LW +F +L  EMI+TK G
Sbjct: 6   LEERDLWTRFKELTNEMIVTKNG 28


>pdb|2R33|A Chain A, Crystal Structure Of A Bowman-Birk Inhibitor From Vigna
           Unguiculata Seeds
 pdb|2R33|B Chain B, Crystal Structure Of A Bowman-Birk Inhibitor From Vigna
           Unguiculata Seeds
          Length = 74

 Score = 26.2 bits (56), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 75  NSDDEKSESGDR--DSPVSKNKIRTRCNCAELLVTECHLETKELWDKFHDLGT 125
           +S DE SES +   DS V    I  +C+C  + +  CH   K     F   G+
Sbjct: 6   DSTDEPSESSEPCCDSCVCTKSIPPQCHCTNIRLNSCHSGCKSCLCTFSIPGS 58


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.311    0.125    0.350 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,749,638
Number of Sequences: 62578
Number of extensions: 75351
Number of successful extensions: 148
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 143
Number of HSP's gapped (non-prelim): 6
length of query: 137
length of database: 14,973,337
effective HSP length: 89
effective length of query: 48
effective length of database: 9,403,895
effective search space: 451386960
effective search space used: 451386960
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 46 (22.3 bits)