Query psy7362
Match_columns 137
No_of_seqs 123 out of 268
Neff 2.8
Searched_HMMs 29240
Date Sat Aug 17 00:48:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7362.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7362hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a04_A T-box transcription fac 99.3 1.6E-12 5.5E-17 102.7 2.6 32 105-136 14-45 (203)
2 2a6q_A Antitoxin YEFM; YEFM, a 15.9 95 0.0033 19.9 2.4 22 114-135 17-38 (86)
3 3q2s_C Cleavage and polyadenyl 9.0 97 0.0033 23.2 0.8 20 105-124 74-93 (229)
4 2a4h_A Selenoprotein SEP15; re 8.9 1.2E+02 0.0042 22.6 1.3 16 19-34 103-118 (126)
5 2cqc_A Arginine/serine-rich sp 8.0 3.7E+02 0.013 16.1 3.1 17 109-125 25-41 (95)
6 3hs2_A PHD protein, prevent HO 8.0 2.7E+02 0.0093 16.7 2.4 20 115-135 15-34 (58)
7 3lqv_A PRE-mRNA branch site pr 7.7 3.4E+02 0.012 17.1 3.0 32 87-125 3-34 (115)
8 3dbo_A Uncharacterized protein 7.2 93 0.0032 21.6 0.0 22 113-135 20-41 (93)
9 1so2_A CGMP-inhibited 3',5'-cy 7.1 1.1E+02 0.0039 26.0 0.5 42 30-71 362-403 (420)
10 2cq4_A RNA binding motif prote 7.0 2.7E+02 0.0092 17.6 2.2 50 76-125 2-51 (114)
No 1
>4a04_A T-box transcription factor TBX1; transcription, T-box proteins; HET: DNA; 2.58A {Homo sapiens}
Probab=99.25 E-value=1.6e-12 Score=102.66 Aligned_cols=32 Identities=50% Similarity=0.810 Sum_probs=30.4
Q ss_pred cccceeeccHhHHHHHHhccceeeeecCCCCC
Q psy7362 105 LVTECHLETKELWDKFHDLGTEMIITKTGSMV 136 (137)
Q Consensus 105 ~~v~v~LE~~eLW~kF~qlGTEMIITKsGRRM 136 (137)
.+++|+|++++||.+|+++||||||||+||||
T Consensus 14 ~~i~V~Le~~~LW~~Fh~~~tEMIITK~GRrm 45 (203)
T 4a04_A 14 GGVSVQLEMKALWDEFNQLGTEMIVTKAGRRM 45 (203)
T ss_dssp -CCEEEETTHHHHHHHHHHCCEEECCSSCEEC
T ss_pred CCcEEEeCCHHHHHhhCcCCCeEEEEeCCccc
Confidence 57899999999999999999999999999999
No 2
>2a6q_A Antitoxin YEFM; YEFM, antitoxin, addiction modules, RNAse, inhibitor, toxin inhibitor/toxin complex; 2.05A {Escherichia coli} SCOP: d.306.1.1
Probab=15.88 E-value=95 Score=19.90 Aligned_cols=22 Identities=14% Similarity=0.069 Sum_probs=17.4
Q ss_pred HhHHHHHHhccceeeeecCCCC
Q psy7362 114 KELWDKFHDLGTEMIITKTGSM 135 (137)
Q Consensus 114 ~eLW~kF~qlGTEMIITKsGRR 135 (137)
..|++....-|-.++||+.|+.
T Consensus 17 ~~~~~~v~~~~epviItr~g~~ 38 (86)
T 2a6q_A 17 SATMMKAVEDHAPILITRQNGE 38 (86)
T ss_dssp HHHHHHHHHHTCCEEEECTTSC
T ss_pred HHHHHHHHhcCCcEEEEeCCCc
Confidence 5667777667889999999974
No 3
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=8.98 E-value=97 Score=23.21 Aligned_cols=20 Identities=20% Similarity=0.214 Sum_probs=15.2
Q ss_pred cccceeeccHhHHHHHHhcc
Q psy7362 105 LVTECHLETKELWDKFHDLG 124 (137)
Q Consensus 105 ~~v~v~LE~~eLW~kF~qlG 124 (137)
.++.......+|..-|.++|
T Consensus 74 gnL~~~~te~~L~~~F~~~G 93 (229)
T 3q2s_C 74 GNLTWWTTDEDLTEAVHSLG 93 (229)
T ss_dssp ESCCTTCCHHHHHHHHHTTT
T ss_pred eCCCCCCCHHHHHHHHHHHC
Confidence 34444566788999999999
No 4
>2a4h_A Selenoprotein SEP15; redox, oxidoreductase; NMR {Drosophila melanogaster} SCOP: c.47.1.23
Probab=8.87 E-value=1.2e+02 Score=22.56 Aligned_cols=16 Identities=38% Similarity=0.644 Sum_probs=12.1
Q ss_pred hcCCCCCCCCcccccc
Q psy7362 19 KQSNSTISDEDDEENE 34 (137)
Q Consensus 19 ~~~~~~~~~~~~~~~~ 34 (137)
|+|-|.|.|+||++.|
T Consensus 103 ~~s~~~~~~~~~~~~~ 118 (126)
T 2a4h_A 103 KNSYSVVEDADGDDDE 118 (126)
T ss_dssp CSCCCSCCSCSSCCCC
T ss_pred CcceeeeeccccchhH
Confidence 6788889888876644
No 5
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=7.99 E-value=3.7e+02 Score=16.06 Aligned_cols=17 Identities=18% Similarity=0.347 Sum_probs=13.4
Q ss_pred eeeccHhHHHHHHhccc
Q psy7362 109 CHLETKELWDKFHDLGT 125 (137)
Q Consensus 109 v~LE~~eLW~kF~qlGT 125 (137)
......+|+.-|.+.|.
T Consensus 25 ~~~t~~~l~~~f~~~G~ 41 (95)
T 2cqc_A 25 LYTTERDLREVFSKYGP 41 (95)
T ss_dssp SSCCHHHHHHHHHTTSC
T ss_pred CCCCHHHHHHHHHhcCC
Confidence 35567789999999985
No 6
>3hs2_A PHD protein, prevent HOST death protein; intrinsic disorder, DOC, toxin-anti antitoxin; 2.20A {Enterobacteria phage P1}
Probab=7.98 E-value=2.7e+02 Score=16.67 Aligned_cols=20 Identities=30% Similarity=0.529 Sum_probs=14.0
Q ss_pred hHHHHHHhccceeeeecCCCC
Q psy7362 115 ELWDKFHDLGTEMIITKTGSM 135 (137)
Q Consensus 115 eLW~kF~qlGTEMIITKsGRR 135 (137)
+|-+.- +-|-..+||+.|+.
T Consensus 15 ~ll~~v-~~~e~v~Itr~g~~ 34 (58)
T 3hs2_A 15 EVLNNV-EAGEEVEITRRGRE 34 (58)
T ss_dssp HHHHHH-HTTCCEEEECTTSC
T ss_pred HHHHHH-hCCCcEEEEECCCc
Confidence 344443 45889999999974
No 7
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=7.75 E-value=3.4e+02 Score=17.05 Aligned_cols=32 Identities=19% Similarity=0.332 Sum_probs=19.9
Q ss_pred CCCCcccccccccccccccccceeeccHhHHHHHHhccc
Q psy7362 87 DSPVSKNKIRTRCNCAELLVTECHLETKELWDKFHDLGT 125 (137)
Q Consensus 87 ~sP~~~~~l~t~~~~~~l~~v~v~LE~~eLW~kF~qlGT 125 (137)
.+|.+...++-. ++...+...+|+.-|...|.
T Consensus 3 ~~~~~~~~l~V~-------nlp~~~t~~~l~~~F~~~G~ 34 (115)
T 3lqv_A 3 LPPEVNRILYIR-------NLPYKITAEEMYDIFGKYGP 34 (115)
T ss_dssp CCTTCCSEEEEE-------SCCTTCCHHHHHHHHHTTSC
T ss_pred CCCCCCCEEEEe-------CCCCCCCHHHHHHHHHhcCC
Confidence 344444555543 23335567789999999986
No 8
>3dbo_A Uncharacterized protein; toxin antitoxin complex, vapbc, structural genomics, PSI-2, protein structure initiative; 1.76A {Mycobacterium tuberculosis}
Probab=7.24 E-value=93 Score=21.58 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=0.0
Q ss_pred cHhHHHHHHhccceeeeecCCCC
Q psy7362 113 TKELWDKFHDLGTEMIITKTGSM 135 (137)
Q Consensus 113 ~~eLW~kF~qlGTEMIITKsGRR 135 (137)
.++|+....+ |-+.+||+.|+-
T Consensus 20 ls~ll~~v~~-GE~vvITr~GkP 41 (93)
T 3dbo_A 20 TAGVLRRVRA-GEDVTITVSGRP 41 (93)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHC-CCcEEEEECCEE
Confidence 3566666544 999999999974
No 9
>1so2_A CGMP-inhibited 3',5'-cyclic phosphodiesterase B; PDE3B phosphodiesterase, hydrolase; HET: HG9 666; 2.40A {Homo sapiens} SCOP: a.211.1.2 PDB: 1soj_A*
Probab=7.15 E-value=1.1e+02 Score=26.01 Aligned_cols=42 Identities=26% Similarity=0.420 Sum_probs=0.0
Q ss_pred ccccccccccCCCCccccccccceecCCCCCCCcccccccCc
Q psy7362 30 DEENEVDEWKSKPEEEEDVEVDVEECSDYSNDAPVSRKRKSR 71 (137)
Q Consensus 30 ~~~~~~~~~ks~~e~deevdVdVeecSd~e~~a~~~~~~~~~ 71 (137)
|+..+.+.+++..+++++.+-.-++|.+...+.+..++++++
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (420)
T 1so2_A 362 EAEEDNDTESGDDEDGEELDTEDEEMENNLNPKPPRRKSRRR 403 (420)
T ss_dssp C-------------------------------------CCSS
T ss_pred hcccccccccccccccccCCchhhhhhcccCcccccccccch
No 10
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=7.00 E-value=2.7e+02 Score=17.62 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCcccccccccccccccccceeeccHhHHHHHHhccc
Q psy7362 76 SDDEKSESGDRDSPVSKNKIRTRCNCAELLVTECHLETKELWDKFHDLGT 125 (137)
Q Consensus 76 ~~~~~s~~~~r~sP~~~~~l~t~~~~~~l~~v~v~LE~~eLW~kF~qlGT 125 (137)
++.++.....+.+......-......=-+.++.......+|+.-|.+.|.
T Consensus 2 ss~s~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~ 51 (114)
T 2cq4_A 2 SSGSSGKSPVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGK 51 (114)
T ss_dssp CCCCCCCCCSSCCSCCCCTTHHHHTEEEEESCCTTCCHHHHHHHHTTTSC
T ss_pred CCCCCCCCCCCCccCccCcccCCCCEEEEeCCCCCCCHHHHHHHHHhCCC
Done!