Query psy7362
Match_columns 137
No_of_seqs 123 out of 268
Neff 2.8
Searched_HMMs 13730
Date Sat Aug 17 00:48:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7362.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7362hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2cqca1 d.58.7.1 (A:109-191) A 20.4 31 0.0023 20.0 2.3 34 85-125 2-35 (83)
2 d2f9da1 d.58.7.1 (A:12-125) Pr 18.5 49 0.0036 20.1 3.1 41 86-133 1-43 (114)
3 d1apqa_ g.3.11.1 (A:) Compleme 9.6 42 0.0031 18.9 0.7 11 50-60 2-12 (53)
4 d1a0aa_ a.38.1.1 (A:) Pho4 B/H 7.7 54 0.0039 19.0 0.6 13 7-19 1-13 (63)
5 d1o7za_ d.9.1.1 (A:) IP-10/CXC 7.3 62 0.0045 19.4 0.8 12 124-135 30-43 (61)
6 d1dgsa2 b.40.4.6 (A:315-400) N 6.5 1.3E+02 0.0091 19.1 2.1 26 108-133 39-65 (86)
7 d1pkpa2 d.50.1.2 (A:4-77) Ribo 6.1 84 0.0061 19.4 1.0 9 129-137 21-29 (74)
8 d1emoa1 g.3.11.1 (A:2124-2166) 6.0 79 0.0058 17.3 0.7 9 50-58 3-11 (43)
9 d1wjka_ c.47.1.1 (A:) Thioredo 5.5 81 0.0059 19.2 0.6 22 92-113 18-39 (100)
10 d2odka1 d.306.1.1 (A:1-51) Hyp 4.9 1.1E+02 0.0083 17.3 0.9 12 124-135 23-34 (51)
No 1
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.38 E-value=31 Score=20.01 Aligned_cols=34 Identities=15% Similarity=0.255 Sum_probs=22.9
Q ss_pred CCCCCCcccccccccccccccccceeeccHhHHHHHHhccc
Q psy7362 85 DRDSPVSKNKIRTRCNCAELLVTECHLETKELWDKFHDLGT 125 (137)
Q Consensus 85 ~r~sP~~~~~l~t~~~~~~l~~v~v~LE~~eLW~kF~qlGT 125 (137)
+|..|.+...|+- .++.......+|+.-|.+.|.
T Consensus 2 ~r~~p~~~~~l~V-------~nL~~~~te~~l~~~F~~~G~ 35 (83)
T d2cqca1 2 NRANPDPNCCLGV-------FGLSLYTTERDLREVFSKYGP 35 (83)
T ss_dssp CCCSCCGGGCEEE-------ESCCSSCCHHHHHHHHHTTSC
T ss_pred CCCCCCCCCEEEE-------eCCCCCCCHHHHHHHHHHhCC
Confidence 4555655555544 344446677899999999997
No 2
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.46 E-value=49 Score=20.06 Aligned_cols=41 Identities=20% Similarity=0.342 Sum_probs=26.1
Q ss_pred CCCCCcccccccccccccccccceeeccHhHHHHHHhccc--eeeeecCC
Q psy7362 86 RDSPVSKNKIRTRCNCAELLVTECHLETKELWDKFHDLGT--EMIITKTG 133 (137)
Q Consensus 86 r~sP~~~~~l~t~~~~~~l~~v~v~LE~~eLW~kF~qlGT--EMIITKsG 133 (137)
|.||.....|+-. ++...+...+|+.-|.+.|+ .+.+-+.|
T Consensus 1 r~pp~~~r~l~V~-------nLp~~~te~~l~~~F~~~G~v~~i~~~~~~ 43 (114)
T d2f9da1 1 RLPPEVNRILYIR-------NLPYKITAEEMYDIFGKYGPIRQIRVGNTP 43 (114)
T ss_dssp CCCTTCCSEEEEE-------SCCTTCCHHHHHHHHHTTSCEEEEEEECST
T ss_pred CcccCCCCEEEEE-------CCCCCCCHHHHHHHHhhcCCeEeecccccC
Confidence 3456554555543 33335677899999999998 55555544
No 3
>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.60 E-value=42 Score=18.95 Aligned_cols=11 Identities=45% Similarity=0.924 Sum_probs=8.4
Q ss_pred ccceecCCCCC
Q psy7362 50 VDVEECSDYSN 60 (137)
Q Consensus 50 VdVeecSd~e~ 60 (137)
|||.||+....
T Consensus 2 vDidEC~~~~~ 12 (53)
T d1apqa_ 2 VDLDECASRSK 12 (53)
T ss_dssp CSCCTTTCSTT
T ss_pred eecccccCCCC
Confidence 78889987654
No 4
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.72 E-value=54 Score=18.97 Aligned_cols=13 Identities=31% Similarity=0.598 Sum_probs=8.3
Q ss_pred hhhhhhhHHHhhh
Q psy7362 7 IKREEHNIIQKRK 19 (137)
Q Consensus 7 ~~~~~~~~~~~~~ 19 (137)
+||.-||++.++.
T Consensus 1 ~rR~~H~~~Er~R 13 (63)
T d1a0aa_ 1 MKRESHKHAEQAR 13 (63)
T ss_dssp CCTTGGGGGTHHH
T ss_pred CccchHHHHHHHH
Confidence 3667777776543
No 5
>d1o7za_ d.9.1.1 (A:) IP-10/CXCL10 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.34 E-value=62 Score=19.36 Aligned_cols=12 Identities=42% Similarity=0.542 Sum_probs=8.0
Q ss_pred cceeeee-c-CCCC
Q psy7362 124 GTEMIIT-K-TGSM 135 (137)
Q Consensus 124 GTEMIIT-K-sGRR 135 (137)
.+|.|+| | .|+.
T Consensus 30 ~~EVIaTLK~ng~~ 43 (61)
T d1o7za_ 30 RVEIIATMKKKGEK 43 (61)
T ss_dssp SCEEEEEETTTSCE
T ss_pred CcEEEEEeecCCcE
Confidence 4688887 5 5654
No 6
>d1dgsa2 b.40.4.6 (A:315-400) NAD+-dependent DNA ligase {Thermus filiformis [TaxId: 276]}
Probab=6.53 E-value=1.3e+02 Score=19.08 Aligned_cols=26 Identities=15% Similarity=0.428 Sum_probs=20.6
Q ss_pred ceeeccHhHHHHHH-hccceeeeecCC
Q psy7362 108 ECHLETKELWDKFH-DLGTEMIITKTG 133 (137)
Q Consensus 108 ~v~LE~~eLW~kF~-qlGTEMIITKsG 133 (137)
+++|+|.++|.... ..|....|.|+|
T Consensus 39 ~atlhN~~~i~~~~i~~Gd~V~i~raG 65 (86)
T d1dgsa2 39 RVTLHNESYIEELDIRIGDWVLVHKAG 65 (86)
T ss_dssp EEECCSHHHHHHTTCBSSCEEEEEEET
T ss_pred EEecCCHHHHhhcCCCcCceEEEEECC
Confidence 57899999988753 337789999887
No 7
>d1pkpa2 d.50.1.2 (A:4-77) Ribosomal S5 protein, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=6.13 E-value=84 Score=19.44 Aligned_cols=9 Identities=22% Similarity=0.534 Sum_probs=6.0
Q ss_pred eecCCCCCC
Q psy7362 129 ITKTGSMVK 137 (137)
Q Consensus 129 ITKsGRRM~ 137 (137)
.||.||||+
T Consensus 21 ~tk~Gr~~~ 29 (74)
T d1pkpa2 21 VVKGGRRLR 29 (74)
T ss_dssp BCSSCCSSC
T ss_pred EecCCceeE
Confidence 467777764
No 8
>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.98 E-value=79 Score=17.28 Aligned_cols=9 Identities=44% Similarity=1.007 Sum_probs=6.7
Q ss_pred ccceecCCC
Q psy7362 50 VDVEECSDY 58 (137)
Q Consensus 50 VdVeecSd~ 58 (137)
|||.||...
T Consensus 3 vDidEC~~~ 11 (43)
T d1emoa1 3 VDMDECKEP 11 (43)
T ss_dssp CCCCSSSST
T ss_pred cceeccCCc
Confidence 688899654
No 9
>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.47 E-value=81 Score=19.15 Aligned_cols=22 Identities=14% Similarity=0.063 Sum_probs=17.2
Q ss_pred ccccccccccccccccceeecc
Q psy7362 92 KNKIRTRCNCAELLVTECHLET 113 (137)
Q Consensus 92 ~~~l~t~~~~~~l~~v~v~LE~ 113 (137)
.-.+|+...|+-|..+...|+.
T Consensus 18 ~i~lft~~~C~~C~~a~~~L~~ 39 (100)
T d1wjka_ 18 VLTLFTKAPCPLCDEAKEVLQP 39 (100)
T ss_dssp EEEEEECSSCHHHHHHHHHTST
T ss_pred EEEEEECCCCCChHHHHHHHHH
Confidence 3568999999999887766654
No 10
>d2odka1 d.306.1.1 (A:1-51) Hypothetical protein NE2111 {Nitrosomonas europaea [TaxId: 915]}
Probab=4.91 E-value=1.1e+02 Score=17.29 Aligned_cols=12 Identities=17% Similarity=0.374 Sum_probs=9.8
Q ss_pred cceeeeecCCCC
Q psy7362 124 GTEMIITKTGSM 135 (137)
Q Consensus 124 GTEMIITKsGRR 135 (137)
|-..+|||.||.
T Consensus 23 ~epv~Itr~G~p 34 (51)
T d2odka1 23 EGPQIVSRRGAE 34 (51)
T ss_dssp TCCEEEEETTEE
T ss_pred CCCEEEEECCee
Confidence 557999999984
Done!