RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7362
(137 letters)
>gnl|CDD|238106 cd00182, TBOX, T-box DNA binding domain of the T-box family of
transcriptional regulators. The T-box family is an
ancient group that appears to play a critical role in
development in all animal species. These genes were
uncovered on the basis of similarity to the DNA binding
domain of murine Brachyury (T) gene product, the
defining feature of the family. Common features shared
by T-box family members are DNA-binding and
transcriptional regulatory activity, a role in
development and conserved expression patterns, most of
the known genes in all species being expressed in
mesoderm or mesoderm precursors.
Length = 188
Score = 58.0 bits (141), Expect = 2e-11
Identities = 18/26 (69%), Positives = 22/26 (84%)
Query: 108 ECHLETKELWDKFHDLGTEMIITKTG 133
+ LE +ELW KFH+LGTEMIITK+G
Sbjct: 3 KVSLENRELWKKFHELGTEMIITKSG 28
>gnl|CDD|216184 pfam00907, T-box, T-box. The T-box encodes a 180 amino acid domain
that binds to DNA. Genes encoding T-box proteins are
found in a wide range of animals, but not in other
kingdoms such as plants. Family members are all thought
to bind to the DNA consensus sequence TCACACCT. they are
found exclusively in the nucleus, and perform
DNA-binding and transcriptional activation/repression
roles. They are generally required for development of
the specific tissues they are expressed in, and
mutations in T-box genes are implicated in human
conditions such as DiGeorge syndrome and X-linked cleft
palate, which feature malformations.
Length = 182
Score = 57.3 bits (139), Expect = 4e-11
Identities = 19/26 (73%), Positives = 22/26 (84%)
Query: 108 ECHLETKELWDKFHDLGTEMIITKTG 133
LE +ELWDKFH+LGTEMIITK+G
Sbjct: 1 TVSLEDRELWDKFHELGTEMIITKSG 26
>gnl|CDD|214656 smart00425, TBOX, Domain first found in the mice T locus
(Brachyury) protein.
Length = 190
Score = 52.3 bits (126), Expect = 3e-09
Identities = 18/26 (69%), Positives = 22/26 (84%)
Query: 108 ECHLETKELWDKFHDLGTEMIITKTG 133
+ LE KELW KFH+LGTEMI+TK+G
Sbjct: 2 KVSLEDKELWRKFHELGTEMIVTKSG 27
>gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta
subunit (SR-beta), together with SR-alpha, forms the
heterodimeric signal recognition particle (SRP). Signal
recognition particle receptor, beta subunit (SR-beta).
SR-beta and SR-alpha form the heterodimeric signal
recognition particle (SRP or SR) receptor that binds SRP
to regulate protein translocation across the ER
membrane. Nascent polypeptide chains are synthesized
with an N-terminal hydrophobic signal sequence that
binds SRP54, a component of the SRP. SRP directs
targeting of the ribosome-nascent chain complex (RNC) to
the ER membrane via interaction with the SR, which is
localized to the ER membrane. The RNC is then
transferred to the protein-conducting channel, or
translocon, which facilitates polypeptide translation
across the ER membrane or integration into the ER
membrane. SR-beta is found only in eukaryotes; it is
believed to control the release of the signal sequence
from SRP54 upon binding of the ribosome to the
translocon. High expression of SR-beta has been observed
in human colon cancer, suggesting it may play a role in
the development of this type of cancer.
Length = 202
Score = 31.1 bits (71), Expect = 0.12
Identities = 11/65 (16%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 4 RLSIKREEHNIIQKRKQSNSTISDEDDEENEVDEWKSKPEEE--EDVEVDVEECSDYSND 61
+ +++E + + + R +S ++ +D ++ + + K E + EVD E S +
Sbjct: 130 KELLEKEINTLRESRSKSLESLDGDDGSKDTLGDKGGKDFEFDQLEGEVDFVEGSVKKSK 189
Query: 62 APVSR 66
+
Sbjct: 190 GGIDD 194
>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit
[Transcription / DNA replication, recombination, and
repair / Chromatin structure and dynamics].
Length = 1001
Score = 30.4 bits (68), Expect = 0.33
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 26 SDE-DDEENEVDEWKSKPEEEEDVEVDVEECSDYSNDAPVSRKRKSRSDYNSDDEKSESG 84
DE D+ E EV E+++ ++E D + EE + S D + +SD+E E
Sbjct: 928 DDESDESEEEVSEYEASSDDESDETDEDEESDESSEDL----SEDESENDSSDEEDGEDW 983
Query: 85 D 85
D
Sbjct: 984 D 984
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 29.8 bits (67), Expect = 0.41
Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 7/87 (8%)
Query: 16 QKRKQSNSTISDEDD-----EENEVDEWKSKPEEEEDVEVDVEECSDYSNDAPVSRKRKS 70
QKR Q N+ D++D V + +E+++VD + S+ + + +
Sbjct: 24 QKRIQQNNG--DKEDSSTSTSSLSVSAVEKTSNAKEEIQVDFQHNSESAVEEVEAEDEIE 81
Query: 71 RSDYNSDDEKSESGDRDSPVSKNKIRT 97
SD KS S ++ +S +
Sbjct: 82 VEQNQSDVLKSSSIVKEESISTDMDGI 108
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 29.6 bits (66), Expect = 0.63
Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 27 DEDDEENEVDEWKSKPEEEEDVEVDVEECSD-YSNDAPVSRKRKS 70
D ++EE E +E + + EEEE+ E + EE + S + P +R++++
Sbjct: 862 DSEEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLEWPETRQKQA 906
Score = 25.7 bits (56), Expect = 9.9
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 26 SDEDDEENEVDEWKSKPEEEEDVEVDVEECSDYSNDAPVS 65
SD D E E +E + + EEEE+ E + EE + N+ P+S
Sbjct: 858 SDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEE--NEEPLS 895
>gnl|CDD|227880 COG5593, COG5593, Nucleic-acid-binding protein possibly involved in
ribosomal biogenesis [Translation, ribosomal structure
and biogenesis].
Length = 821
Score = 28.9 bits (64), Expect = 0.98
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 17 KRKQSNSTISDEDDEENEVDEWKSKPEEEEDVEVDVEECSDYSNDAPVSRKRKSRSDYNS 76
K K+SN D DDE +E + W + + DVE D S+D+ + SD S
Sbjct: 670 KGKKSNKASFDSDDEMDENEIWSALVKSRPDVEDD-------SDDSELDFAEDDFSDSTS 722
Query: 77 DDE-KSESGDRDSPVSKNK 94
DDE K ++ D + S+
Sbjct: 723 DDEPKLDAIDDEDAKSEGS 741
>gnl|CDD|184899 PRK14906, PRK14906, DNA-directed RNA polymerase subunit beta'/alpha
domain fusion protein; Provisional.
Length = 1460
Score = 28.7 bits (64), Expect = 1.3
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Query: 21 SNSTISDEDDEENEVDEWKSKPEEEEDVEVDVEECSDYSNDAPVSRKRKSRSDYNS-DDE 79
++ I+ D E E D + +++ D+EE D D + R+ DY DDE
Sbjct: 134 ASYIITSVDKEAREEDA----DDLRDELAADLEEL-DAERDRLIEATRRLSVDYVPEDDE 188
Query: 80 KSESGDRDSPVSKNKIR 96
+ D ++ ++R
Sbjct: 189 FVDDIGDDERLTAEEVR 205
>gnl|CDD|218538 pfam05285, SDA1, SDA1. This family consists of several SDA1
protein homologues. SDA1 is a Saccharomyces cerevisiae
protein which is involved in the control of the actin
cytoskeleton. The protein is essential for cell
viability and is localised in the nucleus.
Length = 317
Score = 28.1 bits (63), Expect = 1.3
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 10 EEHNIIQKRKQSNSTISDEDDEENEVDEWKSKPEEEEDVE---VDVEECSDY-------- 58
E+ +++K+ + DD+++E +EW+ + +E+ D E +DVE +
Sbjct: 76 EKWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSEDE 135
Query: 59 SNDAPVSRKRKSRSDYNSDDEKSES 83
++K K SD +E E
Sbjct: 136 EEKDEAAKKAKEDSDEELSEEDEEE 160
>gnl|CDD|217829 pfam03985, Paf1, Paf1. Members of this family are components of
the RNA polymerase II associated Paf1 complex. The Paf1
complex functions during the elongation phase of
transcription in conjunction with Spt4-Spt5 and
Spt16-Pob3i.
Length = 431
Score = 28.2 bits (63), Expect = 1.4
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 10/85 (11%)
Query: 10 EEHNIIQKRKQSNSTISDEDDEENEVDEWKSKPEEEEDVEVDVEECSDYSNDAPVSRKRK 69
+E + KR+ I E+ +E+E +E EE+ E + EE D + +
Sbjct: 350 KESKMRDKRRARLDPIDFEEVDEDEDEE-----EEQRSDEHEEEEGEDSEEEG-----SQ 399
Query: 70 SRSDYNSDDEKSESGDRDSPVSKNK 94
SR D +S+ D +S K
Sbjct: 400 SREDGSSESSSDVGSDSESKADKES 424
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein. CDC45 is an essential gene
required for initiation of DNA replication in S.
cerevisiae, forming a complex with MCM5/CDC46.
Homologues of CDC45 have been identified in human, mouse
and smut fungus among others.
Length = 583
Score = 28.0 bits (63), Expect = 1.8
Identities = 15/46 (32%), Positives = 28/46 (60%)
Query: 26 SDEDDEENEVDEWKSKPEEEEDVEVDVEECSDYSNDAPVSRKRKSR 71
D+D+E +E DE SK E++ED + D ++ + + + R+R+ R
Sbjct: 127 DDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSLERRRRRR 172
>gnl|CDD|218223 pfam04712, Radial_spoke, Radial spokehead-like protein. This
family includes the radial spoke head proteins RSP4 and
RSP6 from Chlamydomonas reinhardtii, and several
eukaryotic homologues, including mammalian RSHL1, the
protein product of a familial ciliary dyskinesia
candidate gene.
Length = 481
Score = 27.7 bits (62), Expect = 2.0
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 27 DEDDEENEVDEWKSKPEEEEDVEVDVEECSDYSNDAPV 64
+E+++E+E +E + + EE + E + S DAP+
Sbjct: 349 EEEEQEDEEEEEEEEEPEEPEPEEGPPLLTPISEDAPL 386
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 27.7 bits (62), Expect = 2.7
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 21 SNSTISDEDDEENEVDEWKS-KPEEEEDVEVDVEECSDYSNDAPVSRKRKSRSDYNSD 77
+ D+D EE E D S + E+EED + D E+ + + +K+KS S+
Sbjct: 333 EDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTRSE 390
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family. The Daxx protein (also known as the
Fas-binding protein) is thought to play a role in
apoptosis, but precise role played by Daxx remains to be
determined. Daxx forms a complex with Axin.
Length = 715
Score = 27.6 bits (61), Expect = 2.8
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 27 DEDDEENEVDEWKSKPEEEEDVEVDVEECSDYSNDAPVSRKRKSRSDYNSDDEKSESGDR 86
+E++EE E +E +S+ EE ED E + E +D ++ + + D +E +E +
Sbjct: 449 EEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERRNS 508
Query: 87 DS 88
+
Sbjct: 509 EM 510
Score = 26.8 bits (59), Expect = 4.6
Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 21 SNSTISDEDDEENEVDEWKSKPEEEEDVEVDVEECSDYSNDAPVSRKRKSRSDYNSDDEK 80
++ +E++EE E +E + + EEEE + + EE + N + + S D +E
Sbjct: 441 EEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGD-GDGEEP 499
Query: 81 SESGDRDSPVSKNKIRT 97
E +R + R
Sbjct: 500 EEDAERRNSEMAGISRM 516
>gnl|CDD|187878 cd09747, Csx1_III-U, CRISPR/Cas system-associated protein Csx1.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Protein of this family often fused to HTH domain; Some
proteins could have an additional fusion with
RecB-family nuclease domain; Core domain appears to have
a Rossmann-like fold; loosely associated with CRISPR/Cas
systems; also known as Cas02710 family.
Length = 378
Score = 26.9 bits (60), Expect = 3.3
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 106 VTECHLETKELWDKFHDLGTEMIITKTG 133
V EC+ + +++ +K+ +L E+I+ TG
Sbjct: 51 VLECYKKARDVLEKWGELREEVIVDYTG 78
>gnl|CDD|218734 pfam05758, Ycf1, Ycf1. The chloroplast genomes of most higher
plants contain two giant open reading frames designated
ycf1 and ycf2. Although the function of Ycf1 is unknown,
it is known to be an essential gene.
Length = 832
Score = 27.3 bits (61), Expect = 3.6
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 1 MLKRLSIKREEHNIIQKRKQSNSTISDEDDEENEVDEWKSKPEEEEDVEVDVEECSD 57
+ + + IK+ N I+K+K+ I D +E+ + +E K K + EE +++ E D
Sbjct: 633 ISELMKIKQIFRNWIEKKKEFK--ILDYTEEKTKKEEKKEKNKREEKERIEIAETWD 687
>gnl|CDD|221397 pfam12054, DUF3535, Domain of unknown function (DUF3535). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 439 to 459 amino acids in length. This domain is
found associated with pfam00271, pfam02985, pfam00176.
This domain has two completely conserved residues (P and
K) that may be functionally important.
Length = 442
Score = 26.9 bits (60), Expect = 3.6
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 6 SIKREEHNIIQKR 18
SIKREE+ +Q+R
Sbjct: 320 SIKREENEELQQR 332
>gnl|CDD|215624 PLN03191, PLN03191, Type I inositol-1,4,5-trisphosphate
5-phosphatase 2; Provisional.
Length = 621
Score = 27.2 bits (60), Expect = 3.9
Identities = 10/59 (16%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 16 QKRKQSNSTISDEDDEENEVDEWKSKPEEEEDVEVDVEECSDYSNDAPVSRKRKSRSDY 74
K++ + + D ++V + S+ E++ EV + + + RK + Y
Sbjct: 310 IKQRSEVPEVPEVIDSLSDVSDRSSEAEDDTFKEVPSYQL----PEDLIKDCRKVKQKY 364
>gnl|CDD|182422 PRK10381, PRK10381, LPS O-antigen length regulator; Provisional.
Length = 377
Score = 26.6 bits (59), Expect = 4.4
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 13 NIIQKRKQSNSTISDEDDEENEVDEWK-----SKPEEEEDV 48
+ +K K ++ S + DEE+ W EE +DV
Sbjct: 147 ALSEKMKAVDNNASKKKDEESLYTSWTLSFTAPTSEEAQDV 187
>gnl|CDD|216269 pfam01056, Myc_N, Myc amino-terminal region. The myc family
belongs to the basic helix-loop-helix leucine zipper
class of transcription factors, see pfam00010. Myc forms
a heterodimer with Max, and this complex regulates cell
growth through direct activation of genes involved in
cell replication. Mutations in the C-terminal 20
residues of this domain cause unique changes in the
induction of apoptosis, transformation, and G2 arrest.
Length = 329
Score = 26.4 bits (58), Expect = 4.8
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 21 SNSTISDEDDEENEVDEWKSKPEEEEDVEVDVEECSDYSNDAPVS 65
S+S+ SD + EE+E +E + + EEE DV V VE+ SN +
Sbjct: 219 SSSSGSDSESEEDEEEEEEEEEEEEIDV-VTVEKRRSSSNRKAST 262
>gnl|CDD|219038 pfam06459, RR_TM4-6, Ryanodine Receptor TM 4-6. This region covers
TM regions 4-6 of the ryanodine receptor 1 family.
Length = 217
Score = 26.6 bits (59), Expect = 4.8
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 23 STISDEDDEENEVDEWKSKPEEEEDVEV 50
ST E++EE E+EE+ V
Sbjct: 148 STSPAEEEEEEGSGSGDDGEEDEEEGIV 175
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 26.9 bits (60), Expect = 4.8
Identities = 14/75 (18%), Positives = 30/75 (40%), Gaps = 6/75 (8%)
Query: 15 IQKRKQSNSTISDEDDEENEVDEWKSKPEEEEDVEVDVEECSDYSNDAPVSRKRKSRSDY 74
++KR + + + + + K K + V++ S + + R RK +SD
Sbjct: 1310 VKKRLEGSLAALKKKKKSEKKTARKKKSKTR------VKQASASQSSRLLRRPRKKKSDS 1363
Query: 75 NSDDEKSESGDRDSP 89
+S+D+ D
Sbjct: 1364 SSEDDDDSEVDDSED 1378
>gnl|CDD|177447 PHA02664, PHA02664, hypothetical protein; Provisional.
Length = 534
Score = 26.5 bits (58), Expect = 5.8
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 43 EEEEDVEVDVEECSDYSNDAPVSRKRKSRSDYNSDDEKSESGD 85
++DVE + + D AP R + SD + DE ESGD
Sbjct: 424 PADQDVEAEAHDEFDQDPGAPAHADR-ADSDEDDMDE-QESGD 464
>gnl|CDD|218302 pfam04873, EIN3, Ethylene insensitive 3. Ethylene insensitive 3
(EIN3) proteins are a family of plant DNA-binding
proteins that regulate transcription in response to the
gaseous plant hormone ethylene, and are essential for
ethylene-mediated responses including the triple
response, cell growth inhibition, and accelerated
senescence.
Length = 332
Score = 26.1 bits (58), Expect = 6.0
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 10/57 (17%)
Query: 18 RKQSNS-TISDEDDEENEVDEWKSKPEEEEDVEVDVEECSDYSNDAPVSRKRKSRSD 73
RKQS T+ EEN+ +++ ++ + + PV +R +
Sbjct: 246 RKQSPKVTLECGQKEENQG---------KKESKIKHVQAVHTTAGFPVVCQRDKKPG 293
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 26.4 bits (58), Expect = 6.3
Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 23 STISDEDDEENEVDEWKSKPEEEEDVEVDVEECSDYSNDAPVSRKRKSRSDYNSDDEKSE 82
+ + E+ + S E+++++V + +N RK+ + +S+ E ++
Sbjct: 1402 GRAATNKETESSENVSGSSSSEKDEIDVSAKPRPQRAN-----RKQTTYVLSDSESESAD 1456
Query: 83 SGDRD 87
D D
Sbjct: 1457 DSDFD 1461
>gnl|CDD|132735 cd06937, NR_LBD_RAR, The ligand binding domain (LBD) of retinoic
acid receptor (RAR), a members of the nuclear receptor
superfamily. The ligand binding domain (LBD) of
retinoic acid receptor (RAR): Retinoic acid receptors
are members of the nuclear receptor (NR) superfamily of
ligand-regulated transcription factors. RARs mediate the
biological effect of retinoids, including both naturally
dietary vitamin A (retinol) metabolites and active
synthetic analogs. Retinoids play key roles in a wide
variety of essential biological processes, such as
vertebrate embryonic morphogenesis and organogenesis,
differentiation and apoptosis, and homeostasis. RARs
function as heterodimers with retinoic X receptors by
binding to specific RAR response elements (RAREs) found
in the promoter regions of retinoid target genes. In the
absence of ligand, the RAR-RXR heterodimer recruits the
corepressor proteins NCoR or AMRT, and associated
factors such as histone deacetylases or
DNA-methyltransferases, leading to an inactive condensed
chromatin structure, preventing transcription. Upon
ligand binding, the corepressors are released, and
coactivator complexes such as histone acetyltransferase
or histone arginine methyltransferases are recruited to
activate transcription. There are three RAR subtypes
(alpha, beta, gamma), originating from three distinct
genes. For each subtype, several isoforms exist that
differ in their N-terminal region, allowing retinoids to
exert their pleiotropic effects. Like other members of
the nuclear receptor (NR) superfamily of
ligand-activated transcription factors, retinoic acid
receptors have a central well conserved DNA binding
domain (DBD), a variable N-terminal domain, a
non-conserved hinge and a C-terminal ligand binding
domain (LBD).
Length = 231
Score = 25.5 bits (56), Expect = 8.6
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 115 ELWDKFHDLGTEMII 129
LWDKF +L T+ II
Sbjct: 38 GLWDKFSELSTKCII 52
>gnl|CDD|145497 pfam02380, Papo_T_antigen, T-antigen specific domain. This domain
represents a conserved region in papovavirus small and
middle T-antigens. It is found as the N-terminal domain
in the small T-antigen, and is centrally located in the
middle T-antigen.
Length = 93
Score = 25.0 bits (55), Expect = 9.3
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 86 RDSPVSKNKIRTRCNCAELLVTECHLETKELWDKF 120
+D P + + CNC L+ + H K+ K
Sbjct: 16 KDWPTCLKNVSSNCNCILCLLRKQHKNRKKFLRKP 50
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.305 0.124 0.346
Gapped
Lambda K H
0.267 0.0696 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,617,575
Number of extensions: 565507
Number of successful extensions: 1088
Number of sequences better than 10.0: 1
Number of HSP's gapped: 872
Number of HSP's successfully gapped: 214
Length of query: 137
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 50
Effective length of database: 7,078,804
Effective search space: 353940200
Effective search space used: 353940200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 54 (24.6 bits)