RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy7362
         (137 letters)



>1xbr_A Protein (T protein); complex (transcription factor/DNA),
           transcription factor, DNA-binding protein,
           transcription/DNA complex; HET: DNA; 2.50A {Xenopus
           laevis} SCOP: b.2.5.4
          Length = 184

 Score = 42.4 bits (99), Expect = 7e-06
 Identities = 12/29 (41%), Positives = 19/29 (65%)

Query: 108 ECHLETKELWDKFHDLGTEMIITKTGSMV 136
           +  LE ++LW +F +L  EMI+TK G  +
Sbjct: 3   KVSLEERDLWTRFKELTNEMIVTKNGRRM 31


>4a04_A T-box transcription factor TBX1; transcription, T-box proteins;
           HET: DNA; 2.58A {Homo sapiens}
          Length = 203

 Score = 42.1 bits (98), Expect = 1e-05
 Identities = 16/29 (55%), Positives = 20/29 (68%)

Query: 108 ECHLETKELWDKFHDLGTEMIITKTGSMV 136
              LE K LWD+F+ LGTEMI+TK G  +
Sbjct: 17  SVQLEMKALWDEFNQLGTEMIVTKAGRRM 45


>1h6f_A T-box transcription factor TBX3; transcription factor, TBX3, T-box
           transcription factor; 1.7A {Homo sapiens} SCOP: b.2.5.4
          Length = 193

 Score = 39.8 bits (92), Expect = 6e-05
 Identities = 18/29 (62%), Positives = 23/29 (79%)

Query: 108 ECHLETKELWDKFHDLGTEMIITKTGSMV 136
           + HLE KELWD+FH  GTEM+ITK+G  +
Sbjct: 6   KVHLEAKELWDQFHKRGTEMVITKSGRRM 34


>2x6u_A T-box transcription factor TBX5; developmental protein,
           DNA-binding, HOLT-ORAM-syndrome, IG-fold, nuclear
           protein, repressor; HET: PE4; 1.90A {Homo sapiens} PDB:
           2x6v_A*
          Length = 203

 Score = 39.0 bits (90), Expect = 2e-04
 Identities = 16/29 (55%), Positives = 21/29 (72%)

Query: 108 ECHLETKELWDKFHDLGTEMIITKTGSMV 136
           +  L  +ELW KFH++GTEMIITK G  +
Sbjct: 7   KVFLHERELWLKFHEVGTEMIITKAGRRM 35


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 29.4 bits (65), Expect = 0.35
 Identities = 14/98 (14%), Positives = 31/98 (31%), Gaps = 18/98 (18%)

Query: 38  WKSKPEEEEDVEVDVEECSDYSNDAPVSRKRKSRSDYNSDDEKSESGDRDSPVSKNKIR- 96
           W      + DV V V +   YS       K  + S  +   E     + +  + ++ +  
Sbjct: 396 WFDV--IKSDVMVVVNKLHKYS-LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452

Query: 97  ---TRCNCAELLVTEC-----------HLETKELWDKF 120
               +   ++ L+              HL+  E  ++ 
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM 490


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 28.2 bits (62), Expect = 0.78
 Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 9/81 (11%)

Query: 8   KREEHNIIQKRKQSNSTISDEDDEENEVDEWKSKPEEEEDVEVDVEECSDYSNDAPVSRK 67
             +E   I+K ++       E D  ++      + E  E  + D+EE       +    K
Sbjct: 80  LTQEPESIRKWREEQRKRLQELDAASK----VMEQEWREKAKKDLEEW--NQRQSEQVEK 133

Query: 68  RKSRSDYNSDDEKSESGDRDS 88
            K     N   +K+     D+
Sbjct: 134 NKIN---NRIADKAFYQQPDA 151


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 27.7 bits (61), Expect = 1.4
 Identities = 8/31 (25%), Positives = 10/31 (32%), Gaps = 8/31 (25%)

Query: 35  VDEWKSKPEEEEDVEVDVEECSDYSNDAPVS 65
           + EW   P    D         DY    P+S
Sbjct: 215 ILEWLENPSNTPDK--------DYLLSIPIS 237


>3n7x_A Capsid protein; icosahedral virus capsid, virus-like particle,
          capsid protei barrel, parvovirus; 2.50A {Infectious
          hypodermal and hematopoietinecrosis virus}
          Length = 329

 Score = 26.6 bits (58), Expect = 3.4
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 55 CSDYSNDAPVSRKRKSRSDYNSDDEKSESGDRDSP 89
          C+D +  +P  RKR  R  +N D+E +E      P
Sbjct: 2  CADSTRTSP--RKRSRRDAHNEDEEHAEGSSGPDP 34


>1q32_A TDP1P;, tyrosyl-DNA phosphodiesterase; DNA repair, replication,
          transcription, hydrolase, replication,transcription,
          hydrolase; 2.03A {Saccharomyces cerevisiae} SCOP:
          d.136.1.3 d.136.1.3
          Length = 544

 Score = 26.1 bits (56), Expect = 4.3
 Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 7/90 (7%)

Query: 7  IKREEHNIIQKRKQSNSTISDEDDEENEVDEWKSKPEEEEDVEVDVEECSDYSNDAPVSR 66
          + RE +    KRK+S+         E     WKS     E   +     ++ S+D  +  
Sbjct: 1  MSRETNFNGTKRKRSDV-------AEKVAQRWKSVRYSAEMENMAPVNSNNDSDDCVIVS 53

Query: 67 KRKSRSDYNSDDEKSESGDRDSPVSKNKIR 96
          + K     N + + SE  + +        +
Sbjct: 54 ESKIIDLTNQEQDLSERIETNDTAKGAVFK 83


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.305    0.124    0.346 

Gapped
Lambda     K      H
   0.267   0.0479    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,980,076
Number of extensions: 100838
Number of successful extensions: 208
Number of sequences better than 10.0: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 29
Length of query: 137
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 53
Effective length of database: 4,356,429
Effective search space: 230890737
Effective search space used: 230890737
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 52 (24.4 bits)