RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7362
         (137 letters)



>d1xbra_ b.2.5.4 (A:) T domain from Brachyury transcription factor
           {African clawed frog (Xenopus laevis) [TaxId: 8355]}
          Length = 184

 Score = 51.4 bits (123), Expect = 1e-09
 Identities = 12/26 (46%), Positives = 18/26 (69%)

Query: 108 ECHLETKELWDKFHDLGTEMIITKTG 133
           +  LE ++LW +F +L  EMI+TK G
Sbjct: 3   KVSLEERDLWTRFKELTNEMIVTKNG 28


>d1h6fa_ b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 184

 Score = 48.7 bits (116), Expect = 1e-08
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 108 ECHLETKELWDKFHDLGTEMIITKTG 133
           + HLE KELWD+FH  GTEM+ITK+G
Sbjct: 3   KVHLEAKELWDQFHKRGTEMVITKSG 28


>d1xp3a1 c.1.15.1 (A:2-298) Endonuclease IV {Bacillus anthracis
          [TaxId: 1392]}
          Length = 297

 Score = 23.9 bits (51), Expect = 8.4
 Identities = 5/25 (20%), Positives = 10/25 (40%)

Query: 38 WKSKPEEEEDVEVDVEECSDYSNDA 62
           + KP EE ++E   +       + 
Sbjct: 40 TRRKPIEELNIEAGRKHMEQNGIEE 64


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.305    0.124    0.346 

Gapped
Lambda     K      H
   0.267   0.0641    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 492,125
Number of extensions: 20870
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 7
Length of query: 137
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 61
Effective length of database: 1,364,116
Effective search space: 83211076
Effective search space used: 83211076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 48 (22.5 bits)