BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7363
(552 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FIE|A Chain A, Recombinant Human Coagulation Factor Xiii
pdb|1FIE|B Chain B, Recombinant Human Coagulation Factor Xiii
Length = 731
Score = 282 bits (722), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 167/483 (34%), Positives = 254/483 (52%), Gaps = 33/483 (6%)
Query: 15 FILFNPWCPDDDVFLESEDERKEYVLSDTGLLYRGSYNRMRPAVWKYAQYEKDILECALY 74
+ILFNPWC DD V+L++E ER+EYVL+D G+++ G N ++ W Y Q+E IL+ LY
Sbjct: 181 YILFNPWCEDDAVYLDNEKEREEYVLNDIGVIFYGEVNDIKTRSWSYGQFEDGILDTCLY 240
Query: 75 LATKVGEVGLHGTYDAVQVVRALSAAVNSPDDYGAVFGNWSMDFSGGTPPTKWVGSMKIL 134
+ + ++ L G + ++V R SA VN+ DD G + G+W ++ G PP+ W GS+ IL
Sbjct: 241 VMDR-AQMDLSGRGNPIKVSRVGSAMVNAKDDEGVLVGSWDNIYAYGVPPSAWTGSVDIL 299
Query: 135 QQFYTKKKPVKYGQCWVFSGVLTTGETCRTLEAPNKDIIIIFVNPESLEKNLVVGVCYAA 194
++ + + PV+YGQCWVF+GV T C + A I N Y +
Sbjct: 300 LEYRSSENPVRYGQCWVFAGVFNTFLRCLGIPAR------IVTN-------------YFS 340
Query: 195 AHDTQSSLTVDYFVDEDGRVMEELNSDSIWNFHMWNEVWMTRRDLGTTDFNGWQVIDATP 254
AHD ++L +D F++EDG V +L DS+WN+H WNE WMTR DL F GWQ +D+TP
Sbjct: 341 AHDNDANLQMDIFLEEDGNVNSKLTKDSVWNYHCWNEAWMTRPDL-PVGFGGWQAVDSTP 399
Query: 255 QELSGRKYQCGPTSVTAVKRGEVKIAYDGGFVFSEVNADKVFWRYNGPTQPLKLLRKDIN 314
QE S Y+CGP SV A+K G V +D FVF+EVN+D ++ + + D
Sbjct: 400 QENSDGMYRCGPASVQAIKHGHVCFQFDAPFVFAEVNSDLIYITAKKDGTHV-VENVDAT 458
Query: 315 GIGLALSTKAVGSWTRKDITDNXXXXXXXXXXXXXMLKALKQSASIFSRYYLNEE----- 369
IG + TK +G DITD + AL A + LN E
Sbjct: 459 HIGKLIVTKQIGGDGMMDITDTYKFQEGQEEERLALETALMYGA----KKPLNTEGVMKS 514
Query: 370 FNDIKFDFELRDDIVIGSPFSVVVKMNNKSRDQDYTVTVILRVDAVTYTGKVGDSVKKTK 429
+++ DFE+ ++ V+G F + + N S ++ YT+T L + YTG KK
Sbjct: 515 RSNVDMDFEV-ENAVLGKDFKLSITFRNNSHNR-YTITAYLSANITFYTGVPKAEFKKET 572
Query: 430 EDVVVKRGKSEEIVLHVSYEEYYKRLVDQADFNIACLATVHDTNFEYFAQDDFRVRKPDI 489
DV ++ ++ + + EY +L++QA + A +++T Q + P+I
Sbjct: 573 FDVTLEPLSFKKEAVLIQAGEYMGQLLEQASLHFFVTARINETRDVLAKQKSTVLTIPEI 632
Query: 490 RLK 492
+K
Sbjct: 633 IIK 635
>pdb|1EVU|A Chain A, Human Factor Xiii With Calcium Bound In The Ion Site
pdb|1EVU|B Chain B, Human Factor Xiii With Calcium Bound In The Ion Site
Length = 731
Score = 282 bits (722), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 166/483 (34%), Positives = 254/483 (52%), Gaps = 33/483 (6%)
Query: 15 FILFNPWCPDDDVFLESEDERKEYVLSDTGLLYRGSYNRMRPAVWKYAQYEKDILECALY 74
+ILFNPWC DD V+L++E ER+EYVL+D G+++ G N ++ W Y Q+E IL+ LY
Sbjct: 181 YILFNPWCEDDAVYLDNEKEREEYVLNDIGVIFYGEVNDIKTRSWSYGQFEDGILDTCLY 240
Query: 75 LATKVGEVGLHGTYDAVQVVRALSAAVNSPDDYGAVFGNWSMDFSGGTPPTKWVGSMKIL 134
+ + ++ L G + ++V R SA VN+ DD G + G+W ++ G PP+ W GS+ IL
Sbjct: 241 VMDR-AQMDLSGRGNPIKVSRVGSAMVNAKDDEGVLVGSWDNIYAYGVPPSAWTGSVDIL 299
Query: 135 QQFYTKKKPVKYGQCWVFSGVLTTGETCRTLEAPNKDIIIIFVNPESLEKNLVVGVCYAA 194
++ + + PV+YGQCWVF+GV T C + P + N Y +
Sbjct: 300 LEYRSSENPVRYGQCWVFAGVFNTFLRCLGI-------------PARIVTN------YFS 340
Query: 195 AHDTQSSLTVDYFVDEDGRVMEELNSDSIWNFHMWNEVWMTRRDLGTTDFNGWQVIDATP 254
AHD ++L +D F++EDG V +L DS+WN+H WNE WMTR DL F GWQ +D+TP
Sbjct: 341 AHDNDANLQMDIFLEEDGNVNSKLTKDSVWNYHCWNEAWMTRPDL-PVGFGGWQAVDSTP 399
Query: 255 QELSGRKYQCGPTSVTAVKRGEVKIAYDGGFVFSEVNADKVFWRYNGPTQPLKLLRKDIN 314
QE S Y+CGP SV A+K G V +D FVF+EVN+D ++ + + D
Sbjct: 400 QENSDGMYRCGPASVQAIKHGHVCFQFDAPFVFAEVNSDLIYITAKKDGTHV-VENVDAT 458
Query: 315 GIGLALSTKAVGSWTRKDITDNXXXXXXXXXXXXXMLKALKQSASIFSRYYLNEE----- 369
IG + TK +G DITD + AL A + LN E
Sbjct: 459 HIGKLIVTKQIGGDGMMDITDTYKFQEGQEEERLALETALMYGA----KKPLNTEGVMKS 514
Query: 370 FNDIKFDFELRDDIVIGSPFSVVVKMNNKSRDQDYTVTVILRVDAVTYTGKVGDSVKKTK 429
+++ DFE+ ++ V+G F + + N S ++ YT+T L + YTG KK
Sbjct: 515 RSNVDMDFEV-ENAVLGKDFKLSITFRNNSHNR-YTITAYLSANITFYTGVPKAEFKKET 572
Query: 430 EDVVVKRGKSEEIVLHVSYEEYYKRLVDQADFNIACLATVHDTNFEYFAQDDFRVRKPDI 489
DV ++ ++ + + EY +L++QA + A +++T Q + P+I
Sbjct: 573 FDVTLEPLSFKKEAVLIQAGEYMGQLLEQASLHFFVTARINETRDVLAKQKSTVLTIPEI 632
Query: 490 RLK 492
+K
Sbjct: 633 IIK 635
>pdb|1GGT|A Chain A, Three-Dimensional Structure Of A Transglutaminase: Human
Blood Coagulation Factor Xiii
pdb|1GGT|B Chain B, Three-Dimensional Structure Of A Transglutaminase: Human
Blood Coagulation Factor Xiii
pdb|1F13|A Chain A, Recombinant Human Cellular Coagulation Factor Xiii
pdb|1F13|B Chain B, Recombinant Human Cellular Coagulation Factor Xiii
pdb|1GGU|A Chain A, Human Factor Xiii With Calcium Bound In The Ion Site
pdb|1GGY|A Chain A, Human Factor Xiii With Ytterbium Bound In The Ion Site
pdb|1GGY|B Chain B, Human Factor Xiii With Ytterbium Bound In The Ion Site
pdb|1QRK|A Chain A, Human Factor Xiii With Strontium Bound In The Ion Site
pdb|1QRK|B Chain B, Human Factor Xiii With Strontium Bound In The Ion Site
pdb|1GGU|B Chain B, Human Factor Xiii With Calcium Bound In The Ion Site
Length = 731
Score = 282 bits (722), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 166/483 (34%), Positives = 254/483 (52%), Gaps = 33/483 (6%)
Query: 15 FILFNPWCPDDDVFLESEDERKEYVLSDTGLLYRGSYNRMRPAVWKYAQYEKDILECALY 74
+ILFNPWC DD V+L++E ER+EYVL+D G+++ G N ++ W Y Q+E IL+ LY
Sbjct: 181 YILFNPWCEDDAVYLDNEKEREEYVLNDIGVIFYGEVNDIKTRSWSYGQFEDGILDTCLY 240
Query: 75 LATKVGEVGLHGTYDAVQVVRALSAAVNSPDDYGAVFGNWSMDFSGGTPPTKWVGSMKIL 134
+ + ++ L G + ++V R SA VN+ DD G + G+W ++ G PP+ W GS+ IL
Sbjct: 241 VMDR-AQMDLSGRGNPIKVSRVGSAMVNAKDDEGVLVGSWDNIYAYGVPPSAWTGSVDIL 299
Query: 135 QQFYTKKKPVKYGQCWVFSGVLTTGETCRTLEAPNKDIIIIFVNPESLEKNLVVGVCYAA 194
++ + + PV+YGQCWVF+GV T C + P + N Y +
Sbjct: 300 LEYRSSENPVRYGQCWVFAGVFNTFLRCLGI-------------PARIVTN------YFS 340
Query: 195 AHDTQSSLTVDYFVDEDGRVMEELNSDSIWNFHMWNEVWMTRRDLGTTDFNGWQVIDATP 254
AHD ++L +D F++EDG V +L DS+WN+H WNE WMTR DL F GWQ +D+TP
Sbjct: 341 AHDNDANLQMDIFLEEDGNVNSKLTKDSVWNYHCWNEAWMTRPDL-PVGFGGWQAVDSTP 399
Query: 255 QELSGRKYQCGPTSVTAVKRGEVKIAYDGGFVFSEVNADKVFWRYNGPTQPLKLLRKDIN 314
QE S Y+CGP SV A+K G V +D FVF+EVN+D ++ + + D
Sbjct: 400 QENSDGMYRCGPASVQAIKHGHVCFQFDAPFVFAEVNSDLIYITAKKDGTHV-VENVDAT 458
Query: 315 GIGLALSTKAVGSWTRKDITDNXXXXXXXXXXXXXMLKALKQSASIFSRYYLNEE----- 369
IG + TK +G DITD + AL A + LN E
Sbjct: 459 HIGKLIVTKQIGGDGMMDITDTYKFQEGQEEERLALETALMYGA----KKPLNTEGVMKS 514
Query: 370 FNDIKFDFELRDDIVIGSPFSVVVKMNNKSRDQDYTVTVILRVDAVTYTGKVGDSVKKTK 429
+++ DFE+ ++ V+G F + + N S ++ YT+T L + YTG KK
Sbjct: 515 RSNVDMDFEV-ENAVLGKDFKLSITFRNNSHNR-YTITAYLSANITFYTGVPKAEFKKET 572
Query: 430 EDVVVKRGKSEEIVLHVSYEEYYKRLVDQADFNIACLATVHDTNFEYFAQDDFRVRKPDI 489
DV ++ ++ + + EY +L++QA + A +++T Q + P+I
Sbjct: 573 FDVTLEPLSFKKEAVLIQAGEYMGQLLEQASLHFFVTARINETRDVLAKQKSTVLTIPEI 632
Query: 490 RLK 492
+K
Sbjct: 633 IIK 635
>pdb|1EX0|A Chain A, Human Factor Xiii, Mutant W279f Zymogen
pdb|1EX0|B Chain B, Human Factor Xiii, Mutant W279f Zymogen
Length = 731
Score = 278 bits (712), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 165/486 (33%), Positives = 254/486 (52%), Gaps = 39/486 (8%)
Query: 15 FILFNPWCPDDDVFLESEDERKEYVLSDTGLLYRGSYNRMRPAVWKYAQYEKDILECALY 74
+ILFNPWC DD V+L++E ER+EYVL+D G+++ G N ++ W Y Q+E IL+ LY
Sbjct: 181 YILFNPWCEDDAVYLDNEKEREEYVLNDIGVIFYGEVNDIKTRSWSYGQFEDGILDTCLY 240
Query: 75 LATKVGEVGLHGTYDAVQVVRALSAAVNSPDDYGAVFGNWSMDFSGGTPPTKWVGSMKIL 134
+ + ++ L G + ++V R SA VN+ DD G + G++ ++ G PP+ W GS+ IL
Sbjct: 241 VMDR-AQMDLSGRGNPIKVSRVGSAMVNAKDDEGVLVGSFDNIYAYGVPPSAWTGSVDIL 299
Query: 135 QQFYTKKKPVKYGQCWVFSGVLTTGETCRTLEAPNKDIIIIFVNPESLEKNLVVGVCYAA 194
++ + + PV+YGQCWVF+GV T C + P + N Y +
Sbjct: 300 LEYRSSENPVRYGQCWVFAGVFNTFLRCLGI-------------PARIVTN------YFS 340
Query: 195 AHDTQSSLTVDYFVDEDGRVMEELNSDSIWNFHMWNEVWMTRRDLGTTDFNGWQVIDATP 254
AHD ++L +D F++EDG V +L DS+WN+H WNE WMTR DL F GWQ +D+TP
Sbjct: 341 AHDNDANLQMDIFLEEDGNVNSKLTKDSVWNYHCWNEAWMTRPDL-PVGFGGWQAVDSTP 399
Query: 255 QELSGRKYQCGPTSVTAVKRGEVKIAYDGGFVFSEVNADKVFWRYNGPTQPLKLLRKDIN 314
QE S Y+CGP SV A+K G V +D FVF+EVN+D ++ + + D
Sbjct: 400 QENSDGMYRCGPASVQAIKHGHVCFQFDAPFVFAEVNSDLIYITAKKDGTHV-VENVDAT 458
Query: 315 GIGLALSTKAVGSWTRKDITDNXXXXXXXXXXXXXM--------LKALKQSASIFSRYYL 366
IG + TK +G DITD + K L S S+ SR
Sbjct: 459 HIGKLIVTKQIGGDGMMDITDTYKFQEGQEEERLALETALMYGAKKPLNTSRSMKSR--- 515
Query: 367 NEEFNDIKFDFELRDDIVIGSPFSVVVKMNNKSRDQDYTVTVILRVDAVTYTGKVGDSVK 426
+++ DFE+ ++ V+G F + + N S ++ YT+T L + YTG K
Sbjct: 516 ----SNVDMDFEV-ENAVLGKDFKLSITFRNNSHNR-YTITAYLSANITFYTGVPKAEFK 569
Query: 427 KTKEDVVVKRGKSEEIVLHVSYEEYYKRLVDQADFNIACLATVHDTNFEYFAQDDFRVRK 486
K DV ++ ++ + + EY +L++QA + A +++T Q +
Sbjct: 570 KETFDVTLEPLSFKKEAVLIQAGEYMGQLLEQASLHFFVTARINETRDVLAKQKSTVLTI 629
Query: 487 PDIRLK 492
P+I +K
Sbjct: 630 PEIIIK 635
>pdb|1L9M|A Chain A, Three-Dimensional Structure Of The Human Transglutaminase
3 Enzyme: Binding Of Calcium Ions Change Structure For
Activation
pdb|1L9M|B Chain B, Three-Dimensional Structure Of The Human Transglutaminase
3 Enzyme: Binding Of Calcium Ions Change Structure For
Activation
pdb|1L9N|A Chain A, Three-Dimensional Structure Of The Human Transglutaminase
3 Enzyme: Binding Of Calcium Ions Change Structure For
Activation
pdb|1L9N|B Chain B, Three-Dimensional Structure Of The Human Transglutaminase
3 Enzyme: Binding Of Calcium Ions Change Structure For
Activation
pdb|1NUD|A Chain A, Role Of Calcium Ions In The Activation And Activity Of The
Transglutaminase 3 Enzyme (3 Calciums, Active Form)
pdb|1NUD|B Chain B, Role Of Calcium Ions In The Activation And Activity Of The
Transglutaminase 3 Enzyme (3 Calciums, Active Form)
pdb|1NUF|A Chain A, Role Of Calcium Ions In The Activation And Activity Of The
Transglutaminase 3 Enzyme
pdb|1NUG|A Chain A, Role Of Calcium Ions In The Activation And Activity Of The
Transglutaminase 3 Enzyme (2 Calciums, 1 Mg, Inactive
Form)
pdb|1NUG|B Chain B, Role Of Calcium Ions In The Activation And Activity Of The
Transglutaminase 3 Enzyme (2 Calciums, 1 Mg, Inactive
Form)
Length = 692
Score = 257 bits (656), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 170/507 (33%), Positives = 256/507 (50%), Gaps = 41/507 (8%)
Query: 4 GALSYSHPDSMFILFNPWCPDDDVFLESEDERKEYVLSDTGLLYRGSYNRMRPAVWKYAQ 63
G +S + +LFNPW D VF+ + ER+EYV D G+++ GS NR+ W + Q
Sbjct: 120 GGISSVKLGTFILLFNPWLNVDSVFMGNHAEREEYVQEDAGIIFVGSTNRIGMIGWNFGQ 179
Query: 64 YEKDILECALYLATKV------GEVGLHGTYDAVQVVRALSAAVNSPDDYGAVFGNWSMD 117
+E+DIL L + + + D V R LSA +NS DD G + GNWS
Sbjct: 180 FEEDILSICLSILDRSLNFRRDAATDVASRNDPKYVGRVLSAMINSNDDNGVLAGNWSGT 239
Query: 118 FSGGTPPTKWVGSMKILQQFY-TKKKPVKYGQCWVFSGVLTTGETCRTLEAPNKDIIIIF 176
++GG P W GS++IL+ + + PV+YGQCWVF+G L T R+L P++ I
Sbjct: 240 YTGGRDPRSWDGSVEILKNWKKSGLSPVRYGQCWVFAGTLNTA--LRSLGIPSRVI---- 293
Query: 177 VNPESLEKNLVVGVCYAAAHDTQSSLTVDYFVDEDGRVMEELNSDSIWNFHMWNEVWMTR 236
+ +AHDT +L+VD + D G +++ SDS+WNFH+WNE W R
Sbjct: 294 -------------TNFNSAHDTDRNLSVDVYYDPMGNPLDK-GSDSVWNFHVWNEGWFVR 339
Query: 237 RDLGTTDFNGWQVIDATPQELSGRKYQCGPTSVTAVKRGEVKIAYDGGFVFSEVNADKVF 296
DLG + + GWQV+DATPQE S +QCGP SV V+ G+V++ +D F+F+EVNAD++
Sbjct: 340 SDLGPS-YGGWQVLDATPQERSQGVFQCGPASVIGVREGDVQLNFDMPFIFAEVNADRIT 398
Query: 297 WRYNGPTQPLKLLRKDING--IGLALSTKAVGSWTRKDITDNXXXXXXXXXXXXXMLKAL 354
W Y+ T K + +N IG +STKAVGS R D+TD KAL
Sbjct: 399 WLYDNTTG--KQWKNSVNSHTIGRYISTKAVGSNARMDVTDKYKYPEGSDQERQVFQKAL 456
Query: 355 KQ-------SASIFSRYYLNEEFNDIKFDFELRDDIVIGSPFSVVVKMNNKSRDQDYTVT 407
+ +A+ E+ I ++ + +G ++V+ + N SRD TVT
Sbjct: 457 GKLKPNTPFAATSSMGLETEEQEPSIIGKLKVAGMLAVGKEVNLVLLLKNLSRDTK-TVT 515
Query: 408 VILRVDAVTYTGKVGDSVKKTKEDVVVKRGKSEEIVLHVSYEEYYKRLVDQADFNIACLA 467
V + + Y G + V K + + + E + +SY +Y + L I +
Sbjct: 516 VNMTAWTIIYNGTLVHEVWKDSATMSLDPEEEAEHPIKISYAQYERYLKSDNMIRITAVC 575
Query: 468 TVHDTNFEYFAQDDFRVRKPDIRLKQL 494
V D + E + D + P + L+ L
Sbjct: 576 KVPDES-EVVVERDIILDNPTLTLEVL 601
>pdb|1G0D|A Chain A, Crystal Structure Of Red Sea Bream Transglutaminase
Length = 695
Score = 239 bits (611), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 154/494 (31%), Positives = 245/494 (49%), Gaps = 46/494 (9%)
Query: 13 SMFILFNPWCPDDDVFLESEDERKEYVLSDTGLLYRGSYNRMRPAVWKYAQYEKDILECA 72
S +LFNPWC DD V+L E + +EYV+++ G++Y G+++ +R W Y Q+E +++
Sbjct: 129 SFHMLFNPWCRDDMVYLPDESKLQEYVMNEDGVIYMGTWDYIRSIPWNYGQFEDYVMDIC 188
Query: 73 LYL------ATKVGEVGLHGTYDAVQVVRALSAAVNSPDDYGAVFGNWSMDFSGGTPPTK 126
+ A K E+ + D V V R ++A VNS D G + G W ++ G P +
Sbjct: 189 FEVLDNSPAALKNSEMDIEHRSDPVYVGRTITAMVNSNGDRGVLTGRWEEPYTDGVAPYR 248
Query: 127 WVGSMKILQQFYTKK-KPVKYGQCWVFSGVLTTGETCRTLEAPNKDIIIIFVNPESLEKN 185
W GS+ ILQQ+ +PVKYGQCWVF+ V T R L P + I
Sbjct: 249 WTGSVPILQQWSKAGVRPVKYGQCWVFAAVACT--VLRCLGIPTRPI------------- 293
Query: 186 LVVGVCYAAAHDTQSSLTVDYFVDEDGRVMEELN-SDSIWNFHMWNEVWMTRRDLGTTDF 244
+A+AHD +L+VD+ ++E ++ SDS WNFH W E WM+R DL +
Sbjct: 294 ----TNFASAHDVDGNLSVDFLLNERLESLDSRQRSDSSWNFHCWVESWMSREDLPEGN- 348
Query: 245 NGWQVIDATPQELSGRKYQCGPTSVTAVKRGEVKIAYDGGFVFSEVNADKVFWRYNGPTQ 304
+GWQV+D TPQELS ++ CGP V A+K G + + YD FVF+EVNAD ++W Q
Sbjct: 349 DGWQVLDPTPQELSDGEFCCGPCPVAAIKEGNLGVKYDAPFVFAEVNADTIYWIVQKDGQ 408
Query: 305 PLKLLRKDINGIGLALSTKAVGSWTRKDITDNXXXXXXXXXXXXXMLKALKQSASIFSRY 364
K+ +D +G +STK+V R+D+T + KA ++
Sbjct: 409 RRKIT-EDHASVGKNISTKSVYGNHREDVTLHYKYPEGSQKEREVYKKAGRR-------- 459
Query: 365 YLNEEFNDIKFDFELRDDI-----VIGSPFSVVVKMNNK-SRDQDYTVTVILRVDAVTYT 418
+ E N+I L+ I V G+ F V+V++ N+ RD +T++ AVTY
Sbjct: 460 -VTEPSNEIAEQGRLQLSIKHAQPVFGTDFDVIVEVKNEGGRDAHAQLTMLAM--AVTYN 516
Query: 419 GKVGDSVKKTKEDVVVKRGKSEEIVLHVSYEEYYKRLVDQADFNIACLATVHDTNFEYFA 478
++ V V K+ + V+ + Y++Y + + + + L N
Sbjct: 517 SLRRGECQRKTISVTVPAHKAHKEVMRLHYDDYVRCVSEHHLIRVKALLDAPGENGPIMT 576
Query: 479 QDDFRVRKPDIRLK 492
+ + P++ ++
Sbjct: 577 VANIPLSTPELLVQ 590
>pdb|3S3J|A Chain A, Transglutaminase 2 In Complex With A Novel Inhibitor
pdb|3S3P|A Chain A, Transglutaminase 2 In Complex With A Novel Inhibitor
pdb|3S3S|A Chain A, Transglutaminase 2 In Complex With A Novel Inhibitor
Length = 694
Score = 234 bits (597), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 154/489 (31%), Positives = 234/489 (47%), Gaps = 37/489 (7%)
Query: 14 MFILFNPWCPDDDVFLESEDERKEYVLSDTGLLYRGSYNRMRPAVWKYAQYEKDILECAL 73
+LFN WCP D V+L+SE+ER+EYVL+ G +Y+GS ++ W + Q+E IL+ L
Sbjct: 142 FILLFNAWCPADAVYLDSEEERQEYVLTQQGFIYQGSAKFIKNIPWNFGQFEDGILDICL 201
Query: 74 YLATKVGEVGLHGTYDA------VQVVRALSAAVNSPDDYGAVFGNWSMDFSGGTPPTKW 127
L + + D V V R +S VN DD G + G W ++ G P W
Sbjct: 202 ILLDVNPKFLKNAGRDCSRRSSPVYVGRVVSGMVNCNDDQGVLLGRWDNNYGDGVSPMSW 261
Query: 128 VGSMKILQQFYTKK-KPVKYGQCWVFSGVLTTGETCRTLEAPNKDIIIIFVNPESLEKNL 186
+GS+ IL+++ + VKYGQCWVF+ V T R L P +
Sbjct: 262 IGSVDILRRWKNHGCQRVKYGQCWVFAAVACT--VLRCLGIPTR---------------- 303
Query: 187 VVGVCYAAAHDTQSSLTVDYFVDEDGRVMEELNSDSIWNFHMWNEVWMTRRDLGTTDFNG 246
V Y +AHD S+L ++YF +E G + + S+ IWNFH W E WMTR DL + G
Sbjct: 304 -VVTNYNSAHDQNSNLLIEYFRNEFGEIQGD-KSEMIWNFHCWVESWMTRPDL-QPGYEG 360
Query: 247 WQVIDATPQELSGRKYQCGPTSVTAVKRGEVKIAYDGGFVFSEVNADKVFWRYNGPTQPL 306
WQ +D TPQE S Y CGP V A+K G++ YD FVF+EVNAD V W
Sbjct: 361 WQALDPTPQEKSEGTYCCGPVPVRAIKEGDLSTKYDAPFVFAEVNADVVDWIQQDDGSVH 420
Query: 307 KLLRKDINGIGLALSTKAVGSWTRKDITDNXXXXXXXXXXXXXMLKALKQSASIFSRYYL 366
K + + + +GL +STK+VG R+DIT + A+ ++
Sbjct: 421 KSINRSLI-VGLKISTKSVGRDEREDITHTYKYPEGSSEEREAFTR-----ANHLNKLAE 474
Query: 367 NEEFNDIKFDFELRDDIVIGSPFSVVVKMNNKSRDQDYTVTVILRVDAVTYTGKVGDSV- 425
EE + + + +GS F V + N + ++Y ++L V+Y G +G
Sbjct: 475 KEE-TGMAMRIRVGQSMNMGSDFDVFAHITNNTA-EEYVCRLLLCARTVSYNGILGPECG 532
Query: 426 KKTKEDVVVKRGKSEEIVLHVSYEEYYKRLVDQADFNIACLATVHDTNFEYFAQDDFRVR 485
K ++ ++ + + L + YE+Y L + + L N A+ D +
Sbjct: 533 TKYLLNLNLEPFSEKSVPLCILYEKYRDCLTESNLIKVRALLVEPVINSYLLAERDLYLE 592
Query: 486 KPDIRLKQL 494
P+I+++ L
Sbjct: 593 NPEIKIRIL 601
>pdb|3LY6|A Chain A, Crystal Structure Of Human Transglutaminase 2 Complex With
Adenosine 5' Triphosphate
pdb|3LY6|B Chain B, Crystal Structure Of Human Transglutaminase 2 Complex With
Adenosine 5' Triphosphate
pdb|3LY6|C Chain C, Crystal Structure Of Human Transglutaminase 2 Complex With
Adenosine 5' Triphosphate
Length = 697
Score = 233 bits (593), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 154/489 (31%), Positives = 233/489 (47%), Gaps = 37/489 (7%)
Query: 14 MFILFNPWCPDDDVFLESEDERKEYVLSDTGLLYRGSYNRMRPAVWKYAQYEKDILECAL 73
+LFN WCP D V+L+SE+ER+EYVL+ G +Y+GS ++ W + Q+E IL+ L
Sbjct: 135 FILLFNAWCPADAVYLDSEEERQEYVLTQQGFIYQGSAKFIKNIPWNFGQFEDGILDICL 194
Query: 74 YLATKVGEVGLHGTYDA------VQVVRALSAAVNSPDDYGAVFGNWSMDFSGGTPPTKW 127
L + + D V V R S VN DD G + G W ++ G P W
Sbjct: 195 ILLDVNPKFLKNAGRDCSRRSSPVYVGRVGSGMVNCNDDQGVLLGRWDNNYGDGVSPMSW 254
Query: 128 VGSMKILQQFYTKK-KPVKYGQCWVFSGVLTTGETCRTLEAPNKDIIIIFVNPESLEKNL 186
+GS+ IL+++ + VKYGQCWVF+ V T R L P +
Sbjct: 255 IGSVDILRRWKNHGCQRVKYGQCWVFAAVACT--VLRCLGIPTR---------------- 296
Query: 187 VVGVCYAAAHDTQSSLTVDYFVDEDGRVMEELNSDSIWNFHMWNEVWMTRRDLGTTDFNG 246
V Y +AHD S+L ++YF +E G + + S+ IWNFH W E WMTR DL + G
Sbjct: 297 -VVTNYNSAHDQNSNLLIEYFRNEFGEIQGD-KSEMIWNFHCWVESWMTRPDL-QPGYEG 353
Query: 247 WQVIDATPQELSGRKYQCGPTSVTAVKRGEVKIAYDGGFVFSEVNADKVFWRYNGPTQPL 306
WQ +D TPQE S Y CGP V A+K G++ YD FVF+EVNAD V W
Sbjct: 354 WQALDPTPQEKSEGTYCCGPVPVRAIKEGDLSTKYDAPFVFAEVNADVVDWIQQDDGSVH 413
Query: 307 KLLRKDINGIGLALSTKAVGSWTRKDITDNXXXXXXXXXXXXXMLKALKQSASIFSRYYL 366
K + + + +GL +STK+VG R+DIT + A+ ++
Sbjct: 414 KSINRSLI-VGLKISTKSVGRDEREDITHTYKYPEGSSEEREAFTR-----ANHLNKLAE 467
Query: 367 NEEFNDIKFDFELRDDIVIGSPFSVVVKMNNKSRDQDYTVTVILRVDAVTYTGKVGDSV- 425
EE + + + +GS F V + N + ++Y ++L V+Y G +G
Sbjct: 468 KEE-TGMAMRIRVGQSMNMGSDFDVFAHITNNTA-EEYVCRLLLCARTVSYNGILGPECG 525
Query: 426 KKTKEDVVVKRGKSEEIVLHVSYEEYYKRLVDQADFNIACLATVHDTNFEYFAQDDFRVR 485
K ++ ++ + + L + YE+Y L + + L N A+ D +
Sbjct: 526 TKYLLNLNLEPFSEKSVPLCILYEKYRDCLTESNLIKVRALLVEPVINSYLLAERDLYLE 585
Query: 486 KPDIRLKQL 494
P+I+++ L
Sbjct: 586 NPEIKIRIL 594
>pdb|1KV3|A Chain A, Human Tissue Transglutaminase In Gdp Bound Form
pdb|1KV3|B Chain B, Human Tissue Transglutaminase In Gdp Bound Form
pdb|1KV3|C Chain C, Human Tissue Transglutaminase In Gdp Bound Form
pdb|1KV3|D Chain D, Human Tissue Transglutaminase In Gdp Bound Form
pdb|1KV3|E Chain E, Human Tissue Transglutaminase In Gdp Bound Form
pdb|1KV3|F Chain F, Human Tissue Transglutaminase In Gdp Bound Form
pdb|2Q3Z|A Chain A, Transglutaminase 2 Undergoes Large Conformational Change
Upon Activation
Length = 687
Score = 232 bits (592), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 153/489 (31%), Positives = 233/489 (47%), Gaps = 37/489 (7%)
Query: 14 MFILFNPWCPDDDVFLESEDERKEYVLSDTGLLYRGSYNRMRPAVWKYAQYEKDILECAL 73
+LFN WCP D V+L+SE+ER+EYVL+ G +Y+GS ++ W + Q++ IL+ L
Sbjct: 135 FILLFNAWCPADAVYLDSEEERQEYVLTQQGFIYQGSAKFIKNIPWNFGQFQDGILDICL 194
Query: 74 YLATKVGEVGLHGTYDA------VQVVRALSAAVNSPDDYGAVFGNWSMDFSGGTPPTKW 127
L + + D V V R S VN DD G + G W ++ G P W
Sbjct: 195 ILLDVNPKFLKNAGRDCSRRSSPVYVGRVGSGMVNCNDDQGVLLGRWDNNYGDGVSPMSW 254
Query: 128 VGSMKILQQFYTKK-KPVKYGQCWVFSGVLTTGETCRTLEAPNKDIIIIFVNPESLEKNL 186
+GS+ IL+++ + VKYGQCWVF+ V T R L P +
Sbjct: 255 IGSVDILRRWKNHGCQRVKYGQCWVFAAVACT--VLRCLGIPTR---------------- 296
Query: 187 VVGVCYAAAHDTQSSLTVDYFVDEDGRVMEELNSDSIWNFHMWNEVWMTRRDLGTTDFNG 246
V Y +AHD S+L ++YF +E G + + S+ IWNFH W E WMTR DL + G
Sbjct: 297 -VVTNYNSAHDQNSNLLIEYFRNEFGEIQGD-KSEMIWNFHCWVESWMTRPDL-QPGYEG 353
Query: 247 WQVIDATPQELSGRKYQCGPTSVTAVKRGEVKIAYDGGFVFSEVNADKVFWRYNGPTQPL 306
WQ +D TPQE S Y CGP V A+K G++ YD FVF+EVNAD V W
Sbjct: 354 WQALDPTPQEKSEGTYCCGPVPVRAIKEGDLSTKYDAPFVFAEVNADVVDWIQQDDGSVH 413
Query: 307 KLLRKDINGIGLALSTKAVGSWTRKDITDNXXXXXXXXXXXXXMLKALKQSASIFSRYYL 366
K + + + +GL +STK+VG R+DIT + A+ ++
Sbjct: 414 KSINRSLI-VGLKISTKSVGRDEREDITHTYKYPEGSSEEREAFTR-----ANHLNKLAE 467
Query: 367 NEEFNDIKFDFELRDDIVIGSPFSVVVKMNNKSRDQDYTVTVILRVDAVTYTGKVGDSV- 425
EE + + + +GS F V + N + ++Y ++L V+Y G +G
Sbjct: 468 KEE-TGMAMRIRVGQSMNMGSDFDVFAHITNNTA-EEYVCRLLLCARTVSYNGILGPECG 525
Query: 426 KKTKEDVVVKRGKSEEIVLHVSYEEYYKRLVDQADFNIACLATVHDTNFEYFAQDDFRVR 485
K ++ ++ + + L + YE+Y L + + L N A+ D +
Sbjct: 526 TKYLLNLTLEPFSEKSVPLCILYEKYRDCLTESNLIKVRALLVEPVINSYLLAERDLYLE 585
Query: 486 KPDIRLKQL 494
P+I+++ L
Sbjct: 586 NPEIKIRIL 594
>pdb|3ROI|A Chain A, 2.20 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
pdb|3ROI|B Chain B, 2.20 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
pdb|3SLH|A Chain A, 1.70 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
In Complex With Shikimate-3-Phosphate And Glyphosate
pdb|3SLH|B Chain B, 1.70 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
In Complex With Shikimate-3-Phosphate And Glyphosate
pdb|3SLH|C Chain C, 1.70 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
In Complex With Shikimate-3-Phosphate And Glyphosate
pdb|3SLH|D Chain D, 1.70 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
In Complex With Shikimate-3-Phosphate And Glyphosate
pdb|4EGR|A Chain A, 2.50 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
In Complex With Phosphoenolpyruvate
pdb|4EGR|B Chain B, 2.50 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
In Complex With Phosphoenolpyruvate
pdb|4EGR|C Chain C, 2.50 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
In Complex With Phosphoenolpyruvate
pdb|4EGR|D Chain D, 2.50 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
In Complex With Phosphoenolpyruvate
pdb|4EGR|E Chain E, 2.50 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
In Complex With Phosphoenolpyruvate
pdb|4EGR|F Chain F, 2.50 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
In Complex With Phosphoenolpyruvate
Length = 441
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 116 MDFSGGTPPTKWVGSMKILQQFYTKKKPVKYGQ---CWVFSGVLTTGETCRTLEAPNKD 171
+D +G PP K G+ ++ Y + P+ Q C + +G+ G+TC T AP++D
Sbjct: 142 IDSTGNVPPLKIYGNPRLTGIHY--QLPMASAQVKSCLLLAGLYARGKTCITEPAPSRD 198
>pdb|4GFP|A Chain A, 2.7 Angstrom Resolution Structure Of 3-Phosphoshikimate 1-
Carboxyvinyltransferase (Aroa) From Coxiella Burnetii In
A Second Conformational State
Length = 462
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 116 MDFSGGTPPTKWVGSMKILQQFYTKKKPVKYGQ---CWVFSGVLTTGETCRTLEAPNKD 171
+D +G PP K G+ ++ Y + P+ Q C + +G+ G+TC T AP++D
Sbjct: 163 IDSTGNVPPLKIYGNPRLTGIHY--QLPMASAQVKSCLLLAGLYARGKTCITEPAPSRD 219
>pdb|3TR1|A Chain A, Structure Of A 3-Phosphoshikimate
1-Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
Length = 441
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 116 MDFSGGTPPTKWVGSMKILQQFYTKKKPVKYGQ---CWVFSGVLTTGETCRTLEAPNKD 171
+D +G PP K G+ ++ Y + P Q C + +G+ G+TC T AP++D
Sbjct: 142 IDSTGNVPPLKIYGNPRLTGIHY--QLPXASAQVKSCLLLAGLYARGKTCITEPAPSRD 198
>pdb|3HTZ|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna
Synthetase In Complex With L-Serine: Re-Refined
Length = 464
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 45/103 (43%), Gaps = 26/103 (25%)
Query: 223 IWNFHMW---NEVWMTRRDLGTTDFNGWQVIDATPQELSGRKYQCGPTSVTAVKRGEVKI 279
IWN H+ +W LG D N WQ+ D P CGP+S V RGE
Sbjct: 139 IWNEHIGIPSERIWR----LGEED-NFWQMGDVGP---------CGPSSEIYVDRGE--- 181
Query: 280 AYDGGFVFSEVNADKVFWRY----NGPTQPLKLLRKDINGIGL 318
Y+G + E+ + VF +Y NG PL D G+GL
Sbjct: 182 EYEGDERYLEI-WNLVFMQYNRDENGVLTPLPHPNID-TGMGL 222
>pdb|1YFR|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With Atp And Magnesium
pdb|1YFR|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With Atp And Magnesium
pdb|1YFS|A Chain A, The Crystal Structure Of Alanyl-Trna Synthetase In Complex
With L-Alanine
pdb|1YFS|B Chain B, The Crystal Structure Of Alanyl-Trna Synthetase In Complex
With L-Alanine
pdb|1YFT|A Chain A, The Crystal Structure Of The Catalytic Fragment Of Alanyl-
Trna Synthetase In Complex Wtih Glycine
pdb|1YGB|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna
Synthetase In Complex With L-Serine
Length = 465
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 45/103 (43%), Gaps = 26/103 (25%)
Query: 223 IWNFHMW---NEVWMTRRDLGTTDFNGWQVIDATPQELSGRKYQCGPTSVTAVKRGEVKI 279
IWN H+ +W LG D N WQ+ D P CGP+S V RGE
Sbjct: 140 IWNEHIGIPSERIWR----LGEED-NFWQMGDVGP---------CGPSSEIYVDRGE--- 182
Query: 280 AYDGGFVFSEVNADKVFWRY----NGPTQPLKLLRKDINGIGL 318
Y+G + E+ + VF +Y NG PL D G+GL
Sbjct: 183 EYEGDERYLEI-WNLVFMQYNRDENGVLTPLPHPNID-TGMGL 223
>pdb|1RIQ|A Chain A, The Crystal Structure Of The Catalytic Fragment Of The
Alanyl-Trna Synthetase
Length = 465
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 37/95 (38%), Gaps = 33/95 (34%)
Query: 223 IWNFHMW---NEVWMTRRDLGTTDFNGWQVIDATPQELSGRKYQCGPTSVTAVKRGEVKI 279
IWN H+ +W LG D N WQ D P CGP+S V RGE
Sbjct: 140 IWNEHIGIPSERIWR----LGEED-NFWQXGDVGP---------CGPSSEIYVDRGE--- 182
Query: 280 AYDG--------GFVFSEVNADKVFWRYNGPTQPL 306
Y+G VF + N D+ NG PL
Sbjct: 183 EYEGDERYLEIWNLVFXQYNRDE-----NGVLTPL 212
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,474,688
Number of Sequences: 62578
Number of extensions: 762383
Number of successful extensions: 1950
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1890
Number of HSP's gapped (non-prelim): 21
length of query: 552
length of database: 14,973,337
effective HSP length: 104
effective length of query: 448
effective length of database: 8,465,225
effective search space: 3792420800
effective search space used: 3792420800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)