RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7363
(552 letters)
>gnl|CDD|216198 pfam00927, Transglut_C, Transglutaminase family, C-terminal ig like
domain.
Length = 102
Score = 74.3 bits (183), Expect = 2e-16
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
Query: 375 FDFELRDDIVIGSPFSVVVKMNNKSRDQDYTVTVILRVDAVTYTGKVGDSVKKTKEDVVV 434
++ V+G F VVV + N + VT++L V Y G + KK K ++ +
Sbjct: 1 LKIKVLGAAVVGQDFDVVVTLKNPLSEPLTNVTLLLCAFTVEYNG-LLAEGKKKKLNLTL 59
Query: 435 KRGKSEEIVLHVSYEEYYKRLVDQADFNIACLATVHDTNFEYFA 478
+ G+ ++ + ++ E+Y R DF+ LA V T A
Sbjct: 60 EPGEEAKVRVKITPEKYGPRK-LLVDFSSDALADVKGTLNVLVA 102
>gnl|CDD|214673 smart00460, TGc, Transglutaminase/protease-like homologues.
Transglutaminases are enzymes that establish covalent
links between proteins. A subset of transglutaminase
homologues appear to catalyse the reverse reaction, the
hydrolysis of peptide bonds. Proteins with this domain
are both extracellular and intracellular, and it is
likely that the eukaryotic intracellular proteins are
involved in signalling events.
Length = 68
Score = 47.8 bits (114), Expect = 2e-07
Identities = 27/112 (24%), Positives = 35/112 (31%), Gaps = 46/112 (41%)
Query: 143 PVKYGQCWVFSGVLTTGETCRTLEAPNKDIIIIFVNPESLEKNLVVGVCYAAAHDTQSSL 202
KYG C F+ + R+L P + +V G Y A DT L
Sbjct: 3 KTKYGTCGEFAALFVA--LLRSLGIPAR---------------VVSG--YLKAPDTIGGL 43
Query: 203 TVDYFVDEDGRVMEELNSDSIWNFHMWNEVWMTRRDLGTTDFNGWQVIDATP 254
SIW H W EV++ GW +D TP
Sbjct: 44 R------------------SIWEAHAWAEVYLE---------GGWVPVDPTP 68
>gnl|CDD|216735 pfam01841, Transglut_core, Transglutaminase-like superfamily. This
family includes animal transglutaminases and other
bacterial proteins of unknown function. Sequence
conservation in this superfamily primarily involves
three motifs that centre around conserved cysteine,
histidine, and aspartate residues that form the
catalytic triad in the structurally characterized
transglutaminase, the human blood clotting factor
XIIIa'. On the basis of the experimentally demonstrated
activity of the Methanobacterium phage pseudomurein
endoisopeptidase, it is proposed that many, if not all,
microbial homologues of the transglutaminases are
proteases and that the eukaryotic transglutaminases have
evolved from an ancestral protease.
Length = 108
Score = 32.8 bits (75), Expect = 0.10
Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 9/41 (21%)
Query: 212 GRVMEELNSDSIWNFHMWNEVWMTRRDLGTTDFNGWQVIDA 252
G + + + H W EV++ GW +D
Sbjct: 77 GYLRGPDTVRN-GDAHAWVEVYL--------PGYGWVPVDP 108
>gnl|CDD|227634 COG5324, COG5324, Uncharacterized conserved protein [Function
unknown].
Length = 758
Score = 32.6 bits (74), Expect = 0.59
Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 18/124 (14%)
Query: 267 TSVTAVKRGEVKIAYDGGFVFSEVNADKVFWRYNGPTQPLKLLRKDINGIGLA------- 319
V V RG YD F + EVN + Y T P ++ +K I
Sbjct: 73 GEVRIVIRG-----YDKFFNYGEVNITLWDYLYKYATGPYRVTKKYNGCIIFISVLNDGV 127
Query: 320 -LSTKAVGSWTRKDITDNYKYEEKSEEERSSMLKALKQSASIFSRYYLNEEFNDIKFDFE 378
L + S KDI ++ +K E E +LK ++ + + N+ E
Sbjct: 128 VLVSSKHSSGKYKDIFQSHA--DKGESELKELLKQTGRTKQELAHELIE---NNCTAVAE 182
Query: 379 LRDD 382
+ DD
Sbjct: 183 VCDD 186
>gnl|CDD|114880 pfam06187, DUF993, Protein of unknown function (DUF993). This
family consists of several hypothetical bacterial
proteins of unknown function.
Length = 382
Score = 30.3 bits (69), Expect = 2.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 95 RALSAAVNSPDDYGAVFG 112
RAL+ SPDDY V+G
Sbjct: 154 RALARVARSPDDYARVYG 171
>gnl|CDD|140022 PRK13966, nrdF2, ribonucleotide-diphosphate reductase subunit beta;
Provisional.
Length = 324
Score = 30.5 bits (68), Expect = 2.6
Identities = 21/92 (22%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 392 VVKMNNKSRDQDYTVTVILRV--DAVTYTGKVGDSVKKTKEDVVVKRGKSEEIVLHVSYE 449
+V ++ +DYT ++ + + V YT + D V T++ R + + ++++ YE
Sbjct: 214 LVDDVTRAELKDYTYELLFELYDNEVEYTQDLYDEVGLTEDVKKFLRYNANKALMNLGYE 273
Query: 450 EYYKRLVDQADFN---IACLATVHDTNFEYFA 478
+ R D+ D N ++ L+ D N ++F+
Sbjct: 274 ALFPR--DETDVNPAILSALSPNADENHDFFS 303
>gnl|CDD|236260 PRK08411, PRK08411, flagellin; Reviewed.
Length = 572
Score = 30.0 bits (67), Expect = 3.5
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 20/80 (25%)
Query: 194 AAHDTQSSLTVDYFVDEDGRVMEELNSDSIWNFHMWNEVWMTRRDLGTTDFNGWQVIDAT 253
AA D QS T + R+MEEL D+I N TT FNG Q++
Sbjct: 99 AAQDGQSLKTRTMLQADINRLMEEL--DNIAN---------------TTSFNGKQLLSG- 140
Query: 254 PQELSGRKYQCGPTSVTAVK 273
+ +++Q G +S VK
Sbjct: 141 --NFTNQEFQIGASSNQTVK 158
>gnl|CDD|217137 pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II
toxin-antitoxin system. Members of this family act as
antitoxins in type II toxin-antitoxin systems. When
bound to their toxin partners, they can bind DNA via the
N-terminus and repress the expression of operons
containing genes encoding the toxin and the antitoxin.
This domain complexes with Txe toxins containing
pfam06769, Fic/DOC toxins containing pfam02661 and YafO
toxins containing pfam13957.
Length = 75
Score = 27.3 bits (61), Expect = 4.2
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 8/54 (14%)
Query: 413 DAVTYT------GKVGDSVKKTKEDVVVKRGKSEEIVLHVSYEEYYKRLVDQAD 460
V+ + ++ D V+ +E V++ R VL VS EE Y+RL +
Sbjct: 2 KTVSISEAKNNLSELLDRVEAGEEPVIITRRGKPVAVL-VSAEE-YERLQEATL 53
>gnl|CDD|99981 cd03809, GT1_mtfB_like, This family is most closely related to the
GT1 family of glycosyltransferases. mtfB
(mannosyltransferase B) in E. coli has been shown to
direct the growth of the O9-specific polysaccharide
chain. It transfers two mannoses into the position 3 of
the previously synthesized polysaccharide.
Length = 365
Score = 29.3 bits (66), Expect = 5.4
Identities = 16/111 (14%), Positives = 35/111 (31%), Gaps = 15/111 (13%)
Query: 409 ILRVDAVTYTGKVGDSVKKTKEDVVVKRGKSEEIVLHVSYEEYYKRLVDQADFNIACLAT 468
+ + + G D ++ +++ RL + + T
Sbjct: 55 LRLLLRLPRRLLWGLLFLLRAGDRLLLLLLGLDLLHSPHNTAPLLRL-----RGVPVVVT 109
Query: 469 VHDTNFEYFAQ--DDFRVRKPDIRLKQLMKRFDRGNCNGGLITP--TSKRE 515
+HD F + R L++ ++R D +IT +KR+
Sbjct: 110 IHDLIPLRFPEYFSPGFRRYFRRLLRRALRRADA------IITVSEATKRD 154
>gnl|CDD|172158 PRK13589, PRK13589, flagellin; Provisional.
Length = 576
Score = 29.2 bits (65), Expect = 6.3
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 20/80 (25%)
Query: 194 AAHDTQSSLTVDYFVDEDGRVMEELNSDSIWNFHMWNEVWMTRRDLGTTDFNGWQVIDAT 253
AA D QS T + R+MEEL D+I N TT FNG Q++
Sbjct: 99 AAQDGQSLKTRTMLQADINRLMEEL--DNIAN---------------TTSFNGKQLLSGN 141
Query: 254 PQELSGRKYQCGPTSVTAVK 273
+ +++Q G +S +K
Sbjct: 142 ---FTNQEFQIGASSNQTIK 158
>gnl|CDD|217215 pfam02752, Arrestin_C, Arrestin (or S-antigen), C-terminal domain.
Ig-like beta-sandwich fold. Scop reports duplication
with N-terminal domain.
Length = 136
Score = 28.1 bits (63), Expect = 7.2
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 383 IVIGSPFSVVVKMNNKSRDQDYTVTVILRVDAVTYTGKVGDSVKKTKEDVVVKR 436
V G + V+++N+S + + + L V VTY K K +E VV K
Sbjct: 16 YVPGETIPITVEIDNQSSKKIKKIKISL-VQQVTYKAKTPLRRTKNEERVVAKE 68
>gnl|CDD|236527 PRK09462, fur, ferric uptake regulator; Provisional.
Length = 148
Score = 27.8 bits (62), Expect = 9.1
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 445 HVSYEEYYKRLVDQADFNIACLATVH 470
HVS E+ YKRL+D + I LATV+
Sbjct: 33 HVSAEDLYKRLIDMGE-EIG-LATVY 56
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.408
Gapped
Lambda K H
0.267 0.0723 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 28,773,833
Number of extensions: 2830582
Number of successful extensions: 2277
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2273
Number of HSP's successfully gapped: 27
Length of query: 552
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 450
Effective length of database: 6,413,494
Effective search space: 2886072300
Effective search space used: 2886072300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.3 bits)