RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7363
(552 letters)
>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood
coagulation, mutant, W279F, oxyanion, transferase; 2.00A
{Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4
PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A
Length = 731
Score = 514 bits (1324), Expect = e-176
Identities = 170/495 (34%), Positives = 264/495 (53%), Gaps = 26/495 (5%)
Query: 2 YDGALSYSHPDSMF-ILFNPWCPDDDVFLESEDERKEYVLSDTGLLYRGSYNRMRPAVWK 60
Y + +P++ ILFNPWC DD V+L++E ER+EYVL+D G+++ G N ++ W
Sbjct: 167 YGVLRTSRNPETDTYILFNPWCEDDAVYLDNEKEREEYVLNDIGVIFYGEVNDIKTRSWS 226
Query: 61 YAQYEKDILECALYLATKVGEVGLHGTYDAVQVVRALSAAVNSPDDYGAVFGNWSMDFSG 120
Y Q+E IL+ LY+ + ++ L G + ++V R SA VN+ DD G + G++ ++
Sbjct: 227 YGQFEDGILDTCLYVMDR-AQMDLSGRGNPIKVSRVGSAMVNAKDDEGVLVGSFDNIYAY 285
Query: 121 GTPPTKWVGSMKILQQFYTKKKPVKYGQCWVFSGVLTTGETCRTLEAPNKDIIIIFVNPE 180
G PP+ W GS+ IL ++ + + PV+YGQCWVF+GV T R L P + +
Sbjct: 286 GVPPSAWTGSVDILLEYRSSENPVRYGQCWVFAGVFNT--FLRCLGIPARIV-------- 335
Query: 181 SLEKNLVVGVCYAAAHDTQSSLTVDYFVDEDGRVMEELNSDSIWNFHMWNEVWMTRRDLG 240
Y +AHD ++L +D F++EDG V +L DS+WN+H WNE WMTR DL
Sbjct: 336 ---------TNYFSAHDNDANLQMDIFLEEDGNVNSKLTKDSVWNYHCWNEAWMTRPDLP 386
Query: 241 TTDFNGWQVIDATPQELSGRKYQCGPTSVTAVKRGEVKIAYDGGFVFSEVNADKVFWRYN 300
F GWQ +D+TPQE S Y+CGP SV A+K G V +D FVF+EVN+D ++
Sbjct: 387 -VGFGGWQAVDSTPQENSDGMYRCGPASVQAIKHGHVCFQFDAPFVFAEVNSDLIYITAK 445
Query: 301 GPTQPLKLLRKDINGIGLALSTKAVGSWTRKDITDNYKYEEKSEEERSSMLKALKQ-SAS 359
+ D IG + TK +G DITD YK++E EEER ++ AL +
Sbjct: 446 KDGT-HVVENVDATHIGKLIVTKQIGGDGMMDITDTYKFQEGQEEERLALETALMYGAKK 504
Query: 360 IFSRYYLNEEFNDIKFDFELRDDIVIGSPFSVVVKMNNKSRDQDYTVTVILRVDAVTYTG 419
+ + +++ DFE+ ++ V+G F + + N S YT+T L + YTG
Sbjct: 505 PLNTSRSMKSRSNVDMDFEV-ENAVLGKDFKLSITFRNNS-HNRYTITAYLSANITFYTG 562
Query: 420 KVGDSVKKTKEDVVVKRGKSEEIVLHVSYEEYYKRLVDQADFNIACLATVHDTNFEYFAQ 479
KK DV ++ ++ + + EY +L++QA + A +++T Q
Sbjct: 563 VPKAEFKKETFDVTLEPLSFKKEAVLIQAGEYMGQLLEQASLHFFVTARINETRDVLAKQ 622
Query: 480 DDFRVRKPDIRLKQL 494
+ P+I +K
Sbjct: 623 KSTVLTIPEIIIKVR 637
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY
crystallography, metalloenzyme, calcium ION; HET: GDP;
1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1
d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A
1rle_A*
Length = 692
Score = 506 bits (1305), Expect = e-173
Identities = 174/506 (34%), Positives = 259/506 (51%), Gaps = 37/506 (7%)
Query: 3 DGALSYSHPDSMFILFNPWCPDDDVFLESEDERKEYVLSDTGLLYRGSYNRMRPAVWKYA 62
G +S + +LFNPW D VF+ + ER+EYV D G+++ GS NR+ W +
Sbjct: 119 QGGISSVKLGTFILLFNPWLNVDSVFMGNHAEREEYVQEDAGIIFVGSTNRIGMIGWNFG 178
Query: 63 QYEKDILECALYL------ATKVGEVGLHGTYDAVQVVRALSAAVNSPDDYGAVFGNWSM 116
Q+E+DIL L + + + D V R LSA +NS DD G + GNWS
Sbjct: 179 QFEEDILSICLSILDRSLNFRRDAATDVASRNDPKYVGRVLSAMINSNDDNGVLAGNWSG 238
Query: 117 DFSGGTPPTKWVGSMKILQQFY-TKKKPVKYGQCWVFSGVLTTGETCRTLEAPNKDIIII 175
++GG P W GS++IL+ + + PV+YGQCWVF+G L T R+L P++
Sbjct: 239 TYTGGRDPRSWNGSVEILKNWKKSGLSPVRYGQCWVFAGTLNT--ALRSLGIPSR----- 291
Query: 176 FVNPESLEKNLVVGVCYAAAHDTQSSLTVDYFVDEDGRVMEELNSDSIWNFHMWNEVWMT 235
V + +AHDT +L+VD + D G +++ SDS+WNFH+WNE W
Sbjct: 292 ------------VITNFNSAHDTDRNLSVDVYYDPMGNPLDK-GSDSVWNFHVWNEGWFV 338
Query: 236 RRDLGTTDFNGWQVIDATPQELSGRKYQCGPTSVTAVKRGEVKIAYDGGFVFSEVNADKV 295
R DLG + GWQV+DATPQE S +QCGP SV V+ G+V++ +D F+F+EVNAD++
Sbjct: 339 RSDLGP-SYGGWQVLDATPQERSQGVFQCGPASVIGVREGDVQLNFDMPFIFAEVNADRI 397
Query: 296 FWRYNGPTQPLKLLRKDINGIGLALSTKAVGSWTRKDITDNYKYEEKSEEERSSMLKALK 355
W Y+ T + + IG +STKAVGS R D+TD YKY E S++ER KAL
Sbjct: 398 TWLYDNTTGKQWKNSVNSHTIGRYISTKAVGSNARMDVTDKYKYPEGSDQERQVFQKALG 457
Query: 356 QS-----ASIFSRYYLNEEF--NDIKFDFELRDDIVIGSPFSVVVKMNNKSRDQDYTVTV 408
+ + S L E I ++ + +G ++V+ + N S TVTV
Sbjct: 458 KLKPNTPFAATSSMGLETEEQEPSIIGKLKVAGMLAVGKEVNLVLLLKNLS-RDTKTVTV 516
Query: 409 ILRVDAVTYTGKVGDSVKKTKEDVVVKRGKSEEIVLHVSYEEYYKRLVDQADFNIACLAT 468
+ + Y G + V K + + + E + +SY +Y + L I +
Sbjct: 517 NMTAWTIIYNGTLVHEVWKDSATMSLDPEEEAEHPIKISYAQYERYLKSDNMIRITAVCK 576
Query: 469 VHDTNFEYFAQDDFRVRKPDIRLKQL 494
V D + E + D + P + L+ L
Sbjct: 577 VPDES-EVVVERDIILDNPTLTLEVL 601
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue
transglutaminase,acyltransferase; 2.50A {Pagrus major}
SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4
Length = 695
Score = 505 bits (1302), Expect = e-173
Identities = 155/499 (31%), Positives = 250/499 (50%), Gaps = 34/499 (6%)
Query: 2 YDGALSYSHPDSMFILFNPWCPDDDVFLESEDERKEYVLSDTGLLYRGSYNRMRPAVWKY 61
+ + S +LFNPWC DD V+L E + +EYV+++ G++Y G+++ +R W Y
Sbjct: 118 DGHIVERADKISFHMLFNPWCRDDMVYLPDESKLQEYVMNEDGVIYMGTWDYIRSIPWNY 177
Query: 62 AQYEKDILECALYL------ATKVGEVGLHGTYDAVQVVRALSAAVNSPDDYGAVFGNWS 115
Q+E +++ + A K E+ + D V V R ++A VNS D G + G W
Sbjct: 178 GQFEDYVMDICFEVLDNSPAALKNSEMDIEHRSDPVYVGRTITAMVNSNGDRGVLTGRWE 237
Query: 116 MDFSGGTPPTKWVGSMKILQQFY-TKKKPVKYGQCWVFSGVLTTGETCRTLEAPNKDIII 174
++ G P +W GS+ ILQQ+ +PVKYGQCWVF+ V T R L P + I
Sbjct: 238 EPYTDGVAPYRWTGSVPILQQWSKAGVRPVKYGQCWVFAAVACT--VLRCLGIPTRPI-- 293
Query: 175 IFVNPESLEKNLVVGVCYAAAHDTQSSLTVDYFVDEDGRVMEEL-NSDSIWNFHMWNEVW 233
+A+AHD +L+VD+ ++E ++ SDS WNFH W E W
Sbjct: 294 ---------------TNFASAHDVDGNLSVDFLLNERLESLDSRQRSDSSWNFHCWVESW 338
Query: 234 MTRRDLGTTDFNGWQVIDATPQELSGRKYQCGPTSVTAVKRGEVKIAYDGGFVFSEVNAD 293
M+R DL +GWQV+D TPQELS ++ CGP V A+K G + + YD FVF+EVNAD
Sbjct: 339 MSREDLPE-GNDGWQVLDPTPQELSDGEFCCGPCPVAAIKEGNLGVKYDAPFVFAEVNAD 397
Query: 294 KVFWRYNGPTQPLKLLRKDINGIGLALSTKAVGSWTRKDITDNYKYEEKSEEERSSMLKA 353
++W Q K + +D +G +STK+V R+D+T +YKY E S++ER KA
Sbjct: 398 TIYWIVQKDGQRRK-ITEDHASVGKNISTKSVYGNHREDVTLHYKYPEGSQKEREVYKKA 456
Query: 354 LKQSASIFSRYYLNEEFNDIKFDFELRDDIVIGSPFSVVVKMNNKSRDQDYTVTVILRVD 413
++ + E ++ + V G+ F V+V++ N+ +D + +
Sbjct: 457 GRRVTEPSNEI---AEQGRLQLSIKH-AQPVFGTDFDVIVEVKNEG-GRDAHAQLTMLAM 511
Query: 414 AVTYTGKVGDSVKKTKEDVVVKRGKSEEIVLHVSYEEYYKRLVDQADFNIACLATVHDTN 473
AVTY ++ V V K+ + V+ + Y++Y + + + + L N
Sbjct: 512 AVTYNSLRRGECQRKTISVTVPAHKAHKEVMRLHYDDYVRCVSEHHLIRVKALLDAPGEN 571
Query: 474 FEYFAQDDFRVRKPDIRLK 492
+ + P++ ++
Sbjct: 572 GPIMTVANIPLSTPELLVQ 590
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase,
TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9
b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*
Length = 687
Score = 488 bits (1258), Expect = e-167
Identities = 159/497 (31%), Positives = 235/497 (47%), Gaps = 37/497 (7%)
Query: 4 GALSYSHPDSMFILFNPWCPDDDVFLESEDERKEYVLSDTGLLYRGSYNRMRPAVWKYAQ 63
S +LFN WCP D V+L+SE+ER+EYVL+ G +Y+GS ++ W + Q
Sbjct: 125 YQGSSFVLGHFILLFNAWCPADAVYLDSEEERQEYVLTQQGFIYQGSAKFIKNIPWNFGQ 184
Query: 64 YEKDILECALYL------ATKVGEVGLHGTYDAVQVVRALSAAVNSPDDYGAVFGNWSMD 117
++ IL+ L L K V V R S VN DD G + G W +
Sbjct: 185 FQDGILDICLILLDVNPKFLKNAGRDCSRRSSPVYVGRVGSGMVNCNDDQGVLLGRWDNN 244
Query: 118 FSGGTPPTKWVGSMKILQQFY-TKKKPVKYGQCWVFSGVLTTGETCRTLEAPNKDIIIIF 176
+ G P W+GS+ IL+++ + VKYGQCWVF+ V T R L P + +
Sbjct: 245 YGDGVSPMSWIGSVDILRRWKNHGCQRVKYGQCWVFAAVACT--VLRCLGIPTRVV---- 298
Query: 177 VNPESLEKNLVVGVCYAAAHDTQSSLTVDYFVDEDGRVMEELNSDSIWNFHMWNEVWMTR 236
Y +AHD S+L ++YF +E G + + S+ IWNFH W E WMTR
Sbjct: 299 -------------TNYNSAHDQNSNLLIEYFRNEFGEIQGD-KSEMIWNFHCWVESWMTR 344
Query: 237 RDLGTTDFNGWQVIDATPQELSGRKYQCGPTSVTAVKRGEVKIAYDGGFVFSEVNADKVF 296
DL + GWQ +D TPQE S Y CGP V A+K G++ YD FVF+EVNAD V
Sbjct: 345 PDLQP-GYEGWQALDPTPQEKSEGTYCCGPVPVRAIKEGDLSTKYDAPFVFAEVNADVVD 403
Query: 297 WRYNGPTQPLKLLRKDINGIGLALSTKAVGSWTRKDITDNYKYEEKSEEERSSMLKALKQ 356
W K +GL +STK+VG R+DIT YKY E S EER + +A
Sbjct: 404 WIQQDDGSVHK-SINRSLIVGLKISTKSVGRDEREDITHTYKYPEGSSEEREAFTRANHL 462
Query: 357 SASIFSRYYLNEEFNDIKFDFELRDDIVIGSPFSVVVKMNNKSRDQDYTVTVILRVDAVT 416
+ +E + + + +GS F V + N + ++Y ++L V+
Sbjct: 463 N------KLAEKEETGMAMRIRVGQSMNMGSDFDVFAHITNNT-AEEYVCRLLLCARTVS 515
Query: 417 YTGKVGDSV-KKTKEDVVVKRGKSEEIVLHVSYEEYYKRLVDQADFNIACLATVHDTNFE 475
Y G +G K ++ ++ + + L + YE+Y L + + L N
Sbjct: 516 YNGILGPECGTKYLLNLTLEPFSEKSVPLCILYEKYRDCLTESNLIKVRALLVEPVINSY 575
Query: 476 YFAQDDFRVRKPDIRLK 492
A+ D + P+I+++
Sbjct: 576 LLAERDLYLENPEIKIR 592
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 64.9 bits (157), Expect = 4e-11
Identities = 77/574 (13%), Positives = 165/574 (28%), Gaps = 151/574 (26%)
Query: 2 YDGALSYSHPDS-MFILFNPWCPDD------DVFLESEDE----------RKEYVL-SDT 43
D + S LF W F+E + E S
Sbjct: 51 IDHIIMSKDAVSGTLRLF--WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM 108
Query: 44 GLLYRGSYNRMRPAVWKYAQY----EKDI--LECALYLATKVGEVGLHG------TYDAV 91
+Y +R+ +A+Y + L AL V + G T+ A+
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL 168
Query: 92 QVVRALSAAVNSPDDYGAVFGNWSMDFSGGTPPTKWVGSMKILQQFYTKKKPVKYGQCWV 151
V + +F W ++ P +++LQ+ + P +
Sbjct: 169 DVCLSYKVQCKMD---FKIF--W-LNLKNCNSPE---TVLEMLQKLLYQIDPNWTSRS-- 217
Query: 152 FSGVLTTGETCRTLEAPNKDIIIIFVNPESLEKNLVVGVCYAAAHDTQSSLTVDYFVD-- 209
+++A + ++ L LV+ + Q++ + F +
Sbjct: 218 -DHSSNIKLRIHSIQAELRRLLKSKPYENCL---LVL-------LNVQNAKAWNAF-NLS 265
Query: 210 -------EDGRVMEELNSDSIWNFHMWNEVWMTRRDLGTTDFNGW----------QVIDA 252
+V + L++ + + + + D + + +V+
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325
Query: 253 TPQELSG---------------RKYQCGP------TSVTAVKRGEVKIAYDGGFVFSEVN 291
P+ LS + C +S+ ++ E + +D VF +
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP-S 384
Query: 292 AD------KVFWRYNGPTQP---------LKLLRKD-------INGIGLALSTKAVGSWT 329
A + W + L+ K I I L L K +
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444
Query: 330 -RKDITDNYKYEEKSEEERSSM--------------LKALKQS--ASIFSRYYLNEEFND 372
+ I D+Y + + + LK ++ ++F +L+ F +
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE 504
Query: 373 IKFDFELRDDIVIGSPFSVVVKMNNKSRDQDYTVTVILRVDAVTYTGKVGDS---VKKTK 429
K +R D + ++ + N + + I D Y V + K +
Sbjct: 505 QK----IRHD---STAWNASGSILNTLQQLKFYKPYICDNDP-KYERLVNAILDFLPKIE 556
Query: 430 EDVVVKRGKSEEIV---LHVSYEEYYKRLVDQAD 460
E+++ K +++ L E ++ Q
Sbjct: 557 ENLI--CSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
Score = 38.3 bits (88), Expect = 0.008
Identities = 40/250 (16%), Positives = 79/250 (31%), Gaps = 60/250 (24%)
Query: 331 KDITDNYK-----------YEEKSEEERSSML--KALKQSASIFSRYYLNEEFNDIKFDF 377
KD+ D K K + L L + + ++ EE I + F
Sbjct: 36 KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV--EEVLRINYKF 93
Query: 378 -------ELRDDIVIGSPF-SVVVKMNNKSRD-QDYTVTVILRVDAVTYTGKVGDSVKKT 428
E R ++ + ++ N ++ Y V+ R+ K+ ++ +
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS---RLQPYL---KLRQALLEL 147
Query: 429 K--EDVVVK----RGKSEEIVLHVSYEEYYKRLVDQADFNIACLATVHDTNFEYFAQDDF 482
+ ++V++ GK+ + + YK + + DF I L N +
Sbjct: 148 RPAKNVLIDGVLGSGKT---WVALDVCLSYK-VQCKMDFKIFWL------NLK------- 190
Query: 483 RVRKPDIRLKQLMKRFDRGNCNGGLITPTSKREGGQDRRKPAGYTSKAEEIVLHVSYEEY 542
P+ L+ L K + I P S E+ + + Y
Sbjct: 191 NCNSPETVLEMLQKLLYQ-------IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 543 YKRLLIVKAV 552
LL++ V
Sbjct: 244 ENCLLVLLNV 253
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.7 bits (113), Expect = 1e-05
Identities = 74/438 (16%), Positives = 123/438 (28%), Gaps = 175/438 (39%)
Query: 84 LHGTY-----DAVQVVRA-LSAAVNSPDDYGAVFG------NWSMDFSGGTPPTKWVGSM 131
L+ TY D ++ LS + + D VF W ++ TP ++ S+
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW-LENPSNTPDKDYLLSI 234
Query: 132 KILQQFYTKKKPVKYGQCWVFSGVLTTGE---TCRTLEAPNKDIIIIFVNPESLEKNLVV 188
P+ GV+ T + L ++ + LV
Sbjct: 235 -----------PIS----CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVT 279
Query: 189 GVCYAAAHDTQSSLTVDYFVDEDGRVMEELNSDSIWNFHMWNEVWMTRRDLGTTDFNGWQ 248
V A +S F + + L F + G +
Sbjct: 280 AVAIAETDSWES------FFVSVRKAITVL-------FFI-----------------GVR 309
Query: 249 VIDATPQ-ELSGRKYQ------CG-PT---SVTAVKRGEVKIAYDGGFVFSEVNA----- 292
+A P L + G P+ S++ + + +V+ + + N+
Sbjct: 310 CYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN------KTNSHLPAG 363
Query: 293 DKVFW-RYNGPTQ------PLKLLRKDINGIGLALSTKAVGSWTRKDITDNYKYEEKSEE 345
+V NG P L G+ L L RK
Sbjct: 364 KQVEISLVNGAKNLVVSGPPQSLY-----GLNLTL---------RK-------------- 395
Query: 346 ERSSMLKA---LKQSASIFS-RYYLNEEFNDIKFDFELRDDIVIGSPF-SVVVKMNNKSR 400
KA L QS FS R K F R + SPF S ++ +
Sbjct: 396 -----AKAPSGLDQSRIPFSER----------KLKFSNRFL-PVASPFHSHLLVPASDLI 439
Query: 401 DQDYTVTVI------LRVDAV--TYTGKVGDSVKKTKEDVVVKRGKSEEIVLHVSYEEYY 452
++D + +++ V T+ G D+ R S I
Sbjct: 440 NKDLVKNNVSFNAKDIQI-PVYDTFDGS----------DL---RVLSGSIS--------- 476
Query: 453 KRLVDQADFNIACLATVH 470
+R+VD I L V
Sbjct: 477 ERIVDC----IIRL-PVK 489
Score = 44.3 bits (104), Expect = 1e-04
Identities = 44/234 (18%), Positives = 73/234 (31%), Gaps = 72/234 (30%)
Query: 11 PDSMFILFNP--------------WCPDDDVFLESEDERKEYVLSDTGLLYRGSYNRMR- 55
P ++ I F + D L++E KE T +R +
Sbjct: 1669 PVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA 1728
Query: 56 -----PA--VWKYAQYE----KDILECALYLATKVGEVGLH--GTY-------------D 89
PA + + A +E K ++ A G H G Y
Sbjct: 1729 TQFTQPALTLMEKAAFEDLKSKGLIPADATFA------G-HSLGEYAALASLADVMSIES 1781
Query: 90 AVQVV--RALSAAVNSPDDYGAVFGNWSMDFSGGTPPTKWVGSM------KILQQFYTKK 141
V+VV R ++ V P D N+ M P + S ++++ +
Sbjct: 1782 LVEVVFYRGMTMQVAVPRDELGR-SNYGM---IAINPGRVAASFSQEALQYVVERVGKRT 1837
Query: 142 K----PVKY---GQCWVFSGVL----TTGETCRTLEAPNKDIIIIFVNPESLEK 184
V Y Q +V +G L T ++ DII + + SLE+
Sbjct: 1838 GWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSL-SLEE 1890
Score = 43.9 bits (103), Expect = 2e-04
Identities = 45/320 (14%), Positives = 85/320 (26%), Gaps = 108/320 (33%)
Query: 285 FVFSEVNADKVFWRYNGPTQPLKLLRKDINGIGLALSTKAVGSWTRKDITDNYKYEEKSE 344
F + F + PT P +L+ K + Y
Sbjct: 37 FNKILPEPTEGFAADDEPTTPAELVGKFLG----------------------YVSSLVEP 74
Query: 345 EERSSMLKALKQSASIFSRYYLNEEFNDIKFDFELRDDIVIGSPFSVVVKMNNKSRDQDY 404
+ + L + F YL NDI ++ K+ ++
Sbjct: 75 SKVGQFDQVLNLCLTEFENCYLEG--NDIH---------------ALAAKLLQENDTTLV 117
Query: 405 TVTVILR--VDAVTYTGKVGDSVKKTKEDVV---VKRGKS----------------EEIV 443
+++ + A + K + V G + EE+
Sbjct: 118 KTKELIKNYITARIMAKR---PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELR 174
Query: 444 -LHVSYEEYYKRLVDQADFNIACLATVHDTNFEYFAQD-DFR------VRKPD------- 488
L+ +Y L+ + ++ L + F Q + PD
Sbjct: 175 DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI 234
Query: 489 ------IRLKQLMKRFDRGN----CNGGLITPTSKREGGQDRRKPAGYTSKAEEIVLHV- 537
I + QL + TP G+ R G T ++ +V V
Sbjct: 235 PISCPLIGVIQL------AHYVVTAKLLGFTP------GELRSYLKGATGHSQGLVTAVA 282
Query: 538 -----SYEEYYKRLLIVKAV 552
S+E ++ + KA+
Sbjct: 283 IAETDSWESFFV--SVRKAI 300
Score = 35.8 bits (82), Expect = 0.048
Identities = 50/290 (17%), Positives = 85/290 (29%), Gaps = 107/290 (36%)
Query: 212 GRVMEEL-NSDSIWNFHMWNEVWMTRRDLGTTDFNGWQVIDAT---PQEL----SGRKYQ 263
G M+ S + +VW R D D G+ ++D P L G K +
Sbjct: 1630 GMGMDLYKTSKAA------QDVW-NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGK 1682
Query: 264 CGPTSVTAVKRGEVKIAY----DGGF----VFSEVNADKVFWRYNGPT---------QP- 305
++ + + DG +F E+N + + QP
Sbjct: 1683 -------RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPA 1735
Query: 306 --------LKLLRKDINGI--------GL------ALSTKAVGSWTRKDITD------NY 337
+ L+ G+ G AL++ A + + + +
Sbjct: 1736 LTLMEKAAFEDLKS--KGLIPADATFAGHSLGEYAALASLA-DVMSIESLVEVVFYRGMT 1792
Query: 338 KYE--EKSEEERS--SMLKALKQSASIFSRYYLNEEFNDIKFDFELRDDIV------IGS 387
+ E RS M+ A+ F E +V G
Sbjct: 1793 MQVAVPRDELGRSNYGMI-AINPGRVA------------ASFSQEALQYVVERVGKRTGW 1839
Query: 388 PFSVVVKMNNKSRDQDYTVTVI---LR-VDAVTYTGKVGDSVKKTKEDVV 433
+V N +Q Y V LR +D VT V + +K K D++
Sbjct: 1840 LVEIV---NYNVENQQY---VAAGDLRALDTVT---NVLNFIKLQKIDII 1880
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.3 bits (70), Expect = 0.49
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 13/64 (20%)
Query: 297 WRYNGPTQPLKLLRKDINGIGLALSTKAVGSWT---RKDITDNYK-YEEKSEEERSSMLK 352
WR Q +L D A S W +KD+ + + E+ E+ + +
Sbjct: 90 WREE---QRKRLQELD------AASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRI 140
Query: 353 ALKQ 356
A K
Sbjct: 141 ADKA 144
>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein
struct initiative, midwest center for structural
genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron
vpi-5482}
Length = 175
Score = 28.3 bits (64), Expect = 4.8
Identities = 12/78 (15%), Positives = 26/78 (33%), Gaps = 18/78 (23%)
Query: 77 TKVGEV-GLHGTYDAVQVVRALSAAVNSPDDYGAVFGNWSMDFSGGTPPTKWVGS----- 130
+ E+ G + V ++ D++ A+ FS G +
Sbjct: 38 SDTKEIKTNSG--MVLIVDDVIANLKGHEDEFDALV------FSCGDAVPVFQQYANQPY 89
Query: 131 ----MKILQQFYTKKKPV 144
M++++ F K K +
Sbjct: 90 NVDLMEVIKTFGEKGKMM 107
>1jhd_A Sulfate adenylyltransferase; sulfurylase, APS, chemoautotroph,
bromide; 1.70A {Sulfur-oxidizing endosymbiont ofriftia
pachyptila} SCOP: b.122.1.3 c.26.1.5
Length = 396
Score = 28.1 bits (61), Expect = 8.5
Identities = 9/58 (15%), Positives = 20/58 (34%)
Query: 186 LVVGVCYAAAHDTQSSLTVDYFVDEDGRVMEELNSDSIWNFHMWNEVWMTRRDLGTTD 243
++ + A + + E V+ ++ ++I MT + TTD
Sbjct: 83 VLCLLENTDAIGDAKRIALRDPNVEGNPVLAVMDIEAIEEVSDEQMAVMTDKVYRTTD 140
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.408
Gapped
Lambda K H
0.267 0.0753 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,855,443
Number of extensions: 550309
Number of successful extensions: 1163
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1123
Number of HSP's successfully gapped: 18
Length of query: 552
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 454
Effective length of database: 3,965,535
Effective search space: 1800352890
Effective search space used: 1800352890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.8 bits)