RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7363
(552 letters)
>d1ex0a4 d.3.1.4 (A:191-510) Transglutaminase catalytic domain
{Human (Homo sapiens), blood isozyme [TaxId: 9606]}
Length = 320
Score = 410 bits (1056), Expect = e-142
Identities = 132/334 (39%), Positives = 192/334 (57%), Gaps = 22/334 (6%)
Query: 25 DDVFLESEDERKEYVLSDTGLLYRGSYNRMRPAVWKYAQYEKDILECALYLATKVGEVGL 84
D V+L++E ER+EYVL+D G+++ G N ++ W Y Q+E IL+ LY+ + ++ L
Sbjct: 1 DAVYLDNEKEREEYVLNDIGVIFYGEVNDIKTRSWSYGQFEDGILDTCLYVMDR-AQMDL 59
Query: 85 HGTYDAVQVVRALSAAVNSPDDYGAVFGNWSMDFSGGTPPTKWVGSMKILQQFYTKKKPV 144
G + ++V R SA VN+ DD G + G++ ++ G PP+ W GS+ IL ++ + + PV
Sbjct: 60 SGRGNPIKVSRVGSAMVNAKDDEGVLVGSFDNIYAYGVPPSAWTGSVDILLEYRSSENPV 119
Query: 145 KYGQCWVFSGVLTTGETCRTLEAPNKDIIIIFVNPESLEKNLVVGVCYAAAHDTQSSLTV 204
+YGQCWVF+GV T R L P + +V Y +AHD ++L +
Sbjct: 120 RYGQCWVFAGVFNT--FLRCLGIPAR----------------IVT-NYFSAHDNDANLQM 160
Query: 205 DYFVDEDGRVMEELNSDSIWNFHMWNEVWMTRRDLGTTDFNGWQVIDATPQELSGRKYQC 264
D F++EDG V +L DS+WN+H WNE WMTR DL F GWQ +D+TPQE S Y+C
Sbjct: 161 DIFLEEDGNVNSKLTKDSVWNYHCWNEAWMTRPDLP-VGFGGWQAVDSTPQENSDGMYRC 219
Query: 265 GPTSVTAVKRGEVKIAYDGGFVFSEVNADKVFWRYNGPTQPLKLLRKDINGIGLALSTKA 324
GP SV A+K G V +D FVF+EVN+D ++ + D IG + TK
Sbjct: 220 GPASVQAIKHGHVCFQFDAPFVFAEVNSDLIYITAK-KDGTHVVENVDATHIGKLIVTKQ 278
Query: 325 VGSWTRKDITDNYKYEEKSEEERSSMLKALKQSA 358
+G DITD YK++E EEER ++ AL A
Sbjct: 279 IGGDGMMDITDTYKFQEGQEEERLALETALMYGA 312
>d1vjja4 d.3.1.4 (A:141-461) Transglutaminase catalytic domain
{Human (Homo sapiens), TGase E3 [TaxId: 9606]}
Length = 321
Score = 405 bits (1042), Expect = e-140
Identities = 138/339 (40%), Positives = 195/339 (57%), Gaps = 28/339 (8%)
Query: 25 DDVFLESEDERKEYVLSDTGLLYRGSYNRMRPAVWKYAQYEKDILECALYL------ATK 78
D VF+ + ER+EYV D G+++ GS NR+ W + Q+E+DIL L + +
Sbjct: 1 DSVFMGNHAEREEYVQEDAGIIFVGSTNRIGMIGWNFGQFEEDILSICLSILDRSLNFRR 60
Query: 79 VGEVGLHGTYDAVQVVRALSAAVNSPDDYGAVFGNWSMDFSGGTPPTKWVGSMKILQQFY 138
+ D V R LSA +NS DD G + GNWS ++GG P W GS++IL+ +
Sbjct: 61 DAATDVASRNDPKYVGRVLSAMINSNDDNGVLAGNWSGTYTGGRDPRSWNGSVEILKNWK 120
Query: 139 -TKKKPVKYGQCWVFSGVLTTGETCRTLEAPNKDIIIIFVNPESLEKNLVVGVCYAAAHD 197
+ PV+YGQCWVF+G L T R+L P++ V + +AHD
Sbjct: 121 KSGLSPVRYGQCWVFAGTLNT--ALRSLGIPSR-----------------VITNFNSAHD 161
Query: 198 TQSSLTVDYFVDEDGRVMEELNSDSIWNFHMWNEVWMTRRDLGTTDFNGWQVIDATPQEL 257
T +L+VD + D G +++ SDS+WNFH+WNE W R DLG + GWQV+DATPQE
Sbjct: 162 TDRNLSVDVYYDPMGNPLDK-GSDSVWNFHVWNEGWFVRSDLGP-SYGGWQVLDATPQER 219
Query: 258 SGRKYQCGPTSVTAVKRGEVKIAYDGGFVFSEVNADKVFWRYNGPTQPLKLLRKDINGIG 317
S +QCGP SV V+ G+V++ +D F+F+EVNAD++ W Y+ T + + IG
Sbjct: 220 SQGVFQCGPASVIGVREGDVQLNFDMPFIFAEVNADRITWLYDNTTGKQWKNSVNSHTIG 279
Query: 318 LALSTKAVGSWTRKDITDNYKYEEKSEEERSSMLKALKQ 356
+STKAVGS R D+TD YKY E S++ER KAL +
Sbjct: 280 RYISTKAVGSNARMDVTDKYKYPEGSDQERQVFQKALGK 318
>d1g0da4 d.3.1.4 (A:141-461) Transglutaminase catalytic domain {Red
sea bream (Chrysophrys major) [TaxId: 143350]}
Length = 321
Score = 401 bits (1032), Expect = e-138
Identities = 125/340 (36%), Positives = 187/340 (55%), Gaps = 29/340 (8%)
Query: 25 DDVFLESEDERKEYVLSDTGLLYRGSYNRMRPAVWKYAQYEKDILECALYL------ATK 78
D V+L E + +EYV+++ G++Y G+++ +R W Y Q+E +++ + A K
Sbjct: 1 DMVYLPDESKLQEYVMNEDGVIYMGTWDYIRSIPWNYGQFEDYVMDICFEVLDNSPAALK 60
Query: 79 VGEVGLHGTYDAVQVVRALSAAVNSPDDYGAVFGNWSMDFSGGTPPTKWVGSMKILQQFY 138
E+ + D V V R ++A VNS D G + G W ++ G P +W GS+ ILQQ+
Sbjct: 61 NSEMDIEHRSDPVYVGRTITAMVNSNGDRGVLTGRWEEPYTDGVAPYRWTGSVPILQQWS 120
Query: 139 -TKKKPVKYGQCWVFSGVLTTGETCRTLEAPNKDIIIIFVNPESLEKNLVVGVCYAAAHD 197
+PVKYGQCWVF+ V T R L P + +A+AHD
Sbjct: 121 KAGVRPVKYGQCWVFAAVACT--VLRCLGIPTR-----------------PITNFASAHD 161
Query: 198 TQSSLTVDYFVDEDGRVMEELN-SDSIWNFHMWNEVWMTRRDLGTTDFNGWQVIDATPQE 256
+L+VD+ ++E ++ SDS WNFH W E WM+R DL +GWQV+D TPQE
Sbjct: 162 VDGNLSVDFLLNERLESLDSRQRSDSSWNFHCWVESWMSREDLPE-GNDGWQVLDPTPQE 220
Query: 257 LSGRKYQCGPTSVTAVKRGEVKIAYDGGFVFSEVNADKVFWRYNGPTQPLKLLRKDINGI 316
LS ++ CGP V A+K G + + YD FVF+EVNAD ++W Q K + +D +
Sbjct: 221 LSDGEFCCGPCPVAAIKEGNLGVKYDAPFVFAEVNADTIYWIVQKDGQRRK-ITEDHASV 279
Query: 317 GLALSTKAVGSWTRKDITDNYKYEEKSEEERSSMLKALKQ 356
G +STK+V R+D+T +YKY E S++ER KA ++
Sbjct: 280 GKNISTKSVYGNHREDVTLHYKYPEGSQKEREVYKKAGRR 319
>d2q3za4 d.3.1.4 (A:146-461) Transglutaminase catalytic domain
{Human (Homo sapiens), tissue isozyme [TaxId: 9606]}
Length = 316
Score = 369 bits (950), Expect = e-126
Identities = 129/336 (38%), Positives = 176/336 (52%), Gaps = 29/336 (8%)
Query: 25 DDVFLESEDERKEYVLSDTGLLYRGSYNRMRPAVWKYAQYEKDILECALYL------ATK 78
D V+L+SE+ER+EYVL+ G +Y+GS ++ W + Q++ IL+ L L K
Sbjct: 1 DAVYLDSEEERQEYVLTQQGFIYQGSAKFIKNIPWNFGQFQDGILDICLILLDVNPKFLK 60
Query: 79 VGEVGLHGTYDAVQVVRALSAAVNSPDDYGAVFGNWSMDFSGGTPPTKWVGSMKILQQFY 138
V V R S VN DD G + G W ++ G P W+GS+ IL+++
Sbjct: 61 NAGRDCSRRSSPVYVGRVGSGMVNCNDDQGVLLGRWDNNYGDGVSPMSWIGSVDILRRWK 120
Query: 139 -TKKKPVKYGQCWVFSGVLTTGETCRTLEAPNKDIIIIFVNPESLEKNLVVGVCYAAAHD 197
+ VKYGQCWVF+ V T R L P + +V Y +AHD
Sbjct: 121 NHGCQRVKYGQCWVFAAVACT--VLRCLGIPTR---------------VVTN--YNSAHD 161
Query: 198 TQSSLTVDYFVDEDGRVMEELNSDSIWNFHMWNEVWMTRRDLGTTDFNGWQVIDATPQEL 257
S+L ++YF +E G + + S+ IWNFH W E WMTR DL + GWQ +D TPQE
Sbjct: 162 QNSNLLIEYFRNEFGEIQGD-KSEMIWNFHCWVESWMTRPDLQP-GYEGWQALDPTPQEK 219
Query: 258 SGRKYQCGPTSVTAVKRGEVKIAYDGGFVFSEVNADKVFWRYNGPTQPLKLLRKDINGIG 317
S Y CGP V A+K G++ YD FVF+EVNAD V W K + + +G
Sbjct: 220 SEGTYCCGPVPVRAIKEGDLSTKYDAPFVFAEVNADVVDWIQQDDGSVHKSINRS-LIVG 278
Query: 318 LALSTKAVGSWTRKDITDNYKYEEKSEEERSSMLKA 353
L +STK+VG R+DIT YKY E S EER + +A
Sbjct: 279 LKISTKSVGRDEREDITHTYKYPEGSSEEREAFTRA 314
>d1ex0a2 b.1.5.1 (A:516-627) Transglutaminase, two C-terminal
domains {Human (Homo sapiens), blood isozyme [TaxId:
9606]}
Length = 112
Score = 117 bits (296), Expect = 3e-32
Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 371 NDIKFDFELRDDIVIGSPFSVVVKMNNKSRDQDYTVTVILRVDAVTYTGKVGDSVKKTKE 430
+++ DFE+ ++ V+G F + + N S YT+T L + YTG KK
Sbjct: 1 SNVDMDFEV-ENAVLGKDFKLSITFRNNS-HNRYTITAYLSANITFYTGVPKAEFKKETF 58
Query: 431 DVVVKRGKSEEIVLHVSYEEYYKRLVDQADFNIACLATVHDTNFEYFAQDDFRV 484
DV ++ ++ + + EY +L++QA + A +++T Q +
Sbjct: 59 DVTLEPLSFKKEAVLIQAGEYMGQLLEQASLHFFVTARINETRDVLAKQKSTVL 112
>d1vjja2 b.1.5.1 (A:479-593) Transglutaminase, two C-terminal
domains {Human (Homo sapiens), TGase E3 [TaxId: 9606]}
Length = 115
Score = 110 bits (278), Expect = 1e-29
Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 1/109 (0%)
Query: 372 DIKFDFELRDDIVIGSPFSVVVKMNNKSRDQDYTVTVILRVDAVTYTGKVGDSVKKTKED 431
I ++ + +G ++V+ + N S TVTV + + Y G + V K
Sbjct: 3 SIIGKLKVAGMLAVGKEVNLVLLLKNLS-RDTKTVTVNMTAWTIIYNGTLVHEVWKDSAT 61
Query: 432 VVVKRGKSEEIVLHVSYEEYYKRLVDQADFNIACLATVHDTNFEYFAQD 480
+ + + E + +SY +Y + L I + V D + +D
Sbjct: 62 MSLDPEEEAEHPIKISYAQYERYLKSDNMIRITAVCKVPDESEVVVERD 110
>d2q3za2 b.1.5.1 (A:472-585) Transglutaminase, two C-terminal
domains {Human (Homo sapiens), tissue isozyme [TaxId:
9606]}
Length = 114
Score = 108 bits (272), Expect = 5e-29
Identities = 21/114 (18%), Positives = 45/114 (39%), Gaps = 2/114 (1%)
Query: 373 IKFDFELRDDIVIGSPFSVVVKMNNKSRDQDYTVTVILRVDAVTYTGKVGDSVK-KTKED 431
+ + + +GS F V + N + ++Y ++L V+Y G +G K +
Sbjct: 2 MAMRIRVGQSMNMGSDFDVFAHITNNT-AEEYVCRLLLCARTVSYNGILGPECGTKYLLN 60
Query: 432 VVVKRGKSEEIVLHVSYEEYYKRLVDQADFNIACLATVHDTNFEYFAQDDFRVR 485
+ ++ + + L + YE+Y L + + L N A+ D +
Sbjct: 61 LTLEPFSEKSVPLCILYEKYRDCLTESNLIKVRALLVEPVINSYLLAERDLYLE 114
>d1g0da2 b.1.5.1 (A:472-583) Transglutaminase, two C-terminal
domains {Red sea bream (Chrysophrys major) [TaxId:
143350]}
Length = 112
Score = 95.2 bits (237), Expect = 3e-24
Identities = 19/102 (18%), Positives = 40/102 (39%), Gaps = 1/102 (0%)
Query: 381 DDIVIGSPFSVVVKMNNKSRDQDYTVTVILRVDAVTYTGKVGDSVKKTKEDVVVKRGKSE 440
V G+ F V+V++ N+ +D + + AVTY ++ V V K+
Sbjct: 9 AQPVFGTDFDVIVEVKNEG-GRDAHAQLTMLAMAVTYNSLRRGECQRKTISVTVPAHKAH 67
Query: 441 EIVLHVSYEEYYKRLVDQADFNIACLATVHDTNFEYFAQDDF 482
+ V+ + Y++Y + + + + L N +
Sbjct: 68 KEVMRLHYDDYVRCVSEHHLIRVKALLDAPGENGPIMTVANI 109
>d1ex0a1 b.1.18.9 (A:7-190) Transglutaminase N-terminal domain
{Human (Homo sapiens), blood isozyme [TaxId: 9606]}
Length = 184
Score = 35.6 bits (82), Expect = 0.006
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 2 YDGALSYSHPDSMF-ILFNPWCPD 24
Y + +P++ ILFNPWC D
Sbjct: 161 YGVLRTSRNPETDTYILFNPWCED 184
>d1g0da1 b.1.18.9 (A:6-140) Transglutaminase N-terminal domain {Red
sea bream (Chrysophrys major) [TaxId: 143350]}
Length = 135
Score = 33.7 bits (77), Expect = 0.016
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 2 YDGALSYSHPDSMFILFNPWCPD 24
+ + S +LFNPWC D
Sbjct: 113 DGHIVERADKISFHMLFNPWCRD 135
>d2q3za1 b.1.18.9 (A:15-145) Transglutaminase N-terminal domain
{Human (Homo sapiens), tissue isozyme [TaxId: 9606]}
Length = 131
Score = 31.0 bits (70), Expect = 0.14
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 7 SYSHPDSMFILFNPWCP 23
S +LFN WCP
Sbjct: 114 SSFVLGHFILLFNAWCP 130
>d1vjja1 b.1.18.9 (A:1-140) Transglutaminase N-terminal domain
{Human (Homo sapiens), TGase E3 [TaxId: 9606]}
Length = 140
Score = 28.6 bits (64), Expect = 1.1
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 3 DGALSYSHPDSMFILFNPW 21
G +S + +LFNPW
Sbjct: 119 QGGISSVKLGTFILLFNPW 137
>d2be3a1 d.218.1.8 (A:1-203) Putative GTP pyrophosphokinase SP1097
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 203
Score = 28.9 bits (64), Expect = 1.2
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 322 TKAVGSWTRKDITDNYKYEEKSEEERSSMLKALKQSASIFSRYYLNEEFNDIKFDFELRD 381
T A+ W + + NYKY+ +E L+ + A L+EE +I+ D + +
Sbjct: 144 TLAMNFWATIEHSLNYKYQGDFPDEIKKRLEITARIAHQ-----LDEEMGEIRDDIQ--E 196
Query: 382 DIVIGSP 388
+ P
Sbjct: 197 AQALFDP 203
>d2bnga1 d.17.4.8 (A:13-144) Uncharacterized protein Mb2760
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 132
Score = 26.0 bits (56), Expect = 7.3
Identities = 8/57 (14%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
Query: 87 TYDAVQVVRALSAAVNSPDDYGAVFGNWSMDFSGGTPPTKWVGSMKILQQFYTKKKP 143
T +A++ V A A+ + +D+ V D + + + +
Sbjct: 2 TTEAIRAVEAFLNALQN-EDFDTVDAALGDDLVYENVGFSRIRGGRRTATLLRRMQG 57
>d1vmfa_ d.273.1.1 (A:) Hypothetical protein BH3498 {Bacillus
halodurans [TaxId: 86665]}
Length = 136
Score = 26.0 bits (57), Expect = 7.6
Identities = 12/55 (21%), Positives = 24/55 (43%)
Query: 183 EKNLVVGVCYAAAHDTQSSLTVDYFVDEDGRVMEELNSDSIWNFHMWNEVWMTRR 237
E + GV ++ T + +TV+ D D + + D ++ +H N+ M
Sbjct: 30 ETGVTNGVAIVSSLHTTAGITVNENADPDVKRDMIMRLDEVYPWHHENDRHMEGN 84
>d1whua_ a.4.9.1 (A:) Polynucleotide phosphorylase/guanosine
pentaphosphate synthase (PNPase/GPSI), domain 3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 104
Score = 25.6 bits (56), Expect = 7.8
Identities = 10/72 (13%), Positives = 20/72 (27%), Gaps = 11/72 (15%)
Query: 323 KAVGSWTRKDITDNYKYEEKSEEERSSMLKALKQSASIFSRYYLNEEFNDIKFDFELRDD 382
K + + + E + R + ++ E + F D
Sbjct: 20 KYTKIIAMEKLYAVFTDYEHDKVSRDEAVNKIRLDTE--------EHLKE---KFPEVDQ 68
Query: 383 IVIGSPFSVVVK 394
I F++V K
Sbjct: 69 FEIIESFNIVAK 80
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.408
Gapped
Lambda K H
0.267 0.0610 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,187,707
Number of extensions: 106905
Number of successful extensions: 292
Number of sequences better than 10.0: 1
Number of HSP's gapped: 265
Number of HSP's successfully gapped: 19
Length of query: 552
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 462
Effective length of database: 1,171,896
Effective search space: 541415952
Effective search space used: 541415952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.2 bits)