Query psy7364
Match_columns 73
No_of_seqs 102 out of 347
Neff 5.9
Searched_HMMs 29240
Date Sat Aug 17 00:50:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7364.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7364hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2x6u_A T-box transcription fac 100.0 7.5E-36 2.6E-40 205.8 3.9 67 1-69 128-194 (203)
2 1h6f_A T-box transcription fac 100.0 4E-36 1.4E-40 205.8 2.3 65 1-69 127-191 (193)
3 4a04_A T-box transcription fac 100.0 3.5E-35 1.2E-39 202.4 3.9 64 1-65 140-203 (203)
4 1xbr_A Protein (T protein); co 100.0 3.9E-35 1.3E-39 199.8 0.5 59 1-67 123-181 (184)
5 3lkm_A MHCK-A, myosin heavy ch 26.4 12 0.00042 26.8 -0.3 28 39-66 32-60 (307)
6 2ghj_A 50S ribosomal protein L 23.5 30 0.001 21.5 1.2 11 58-68 17-27 (118)
7 2okr_C MAP kinase-activated pr 21.2 16 0.00056 17.0 -0.3 11 48-58 2-12 (26)
8 3bbo_S Ribosomal protein L20; 21.0 29 0.001 21.6 0.7 11 59-69 20-30 (119)
9 2ftc_L MRPL20 protein; mitocho 18.8 30 0.001 21.5 0.4 11 59-69 20-30 (118)
10 1hdf_A Spherulin 3A; structura 18.4 20 0.0007 21.2 -0.4 17 44-60 86-102 (102)
No 1
>2x6u_A T-box transcription factor TBX5; developmental protein, DNA-binding, HOLT-ORAM-syndrome, IG-fold, nuclear protein, repressor; HET: PE4; 1.90A {Homo sapiens} PDB: 2x6v_A*
Probab=100.00 E-value=7.5e-36 Score=205.78 Aligned_cols=67 Identities=51% Similarity=0.848 Sum_probs=48.1
Q ss_pred CCcCccEEEEEEeCCCCCCcccccccceEEeeecCceEEEeccccchhhhhhccccCCCCcCCCCCCCC
Q psy7364 1 MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFAKGFRDSSRL 69 (73)
Q Consensus 1 mHkY~P~lhi~~~~~~~~~~~~~~~~~~~tf~fpeT~FiaVTaYqN~~ItqLKI~~NPfAkgfR~~~~~ 69 (73)
||||||||||+++++.... ......+++|+||||+|||||||||++||||||++||||||||++++.
T Consensus 128 mHKYqPrlhIv~~~~~~~~--~~~~~~~~tf~FpeT~FiAVTaYQN~~It~LKi~~NPFAkgFR~~~~~ 194 (203)
T 2x6u_A 128 MHKYQPRLHIVKADENNGF--GSKNTAFCTHVFPETAFIAVTSYQNHKITQLKIENNPFAKGFRGSDDM 194 (203)
T ss_dssp TEEEEEEEEEEECCTTSCS--SSSCCCEEEECCGGGCEEEESSCCSHHHHHHHHHHC------------
T ss_pred CceEEEEEEEEEeCCcccc--CcCccceEEEEcCCcEEEEEeeecchhhhhhhhccCCCccccccCccc
Confidence 8999999999998765432 123467899999999999999999999999999999999999998754
No 2
>1h6f_A T-box transcription factor TBX3; transcription factor, TBX3, T-box transcription factor; 1.7A {Homo sapiens} SCOP: b.2.5.4
Probab=100.00 E-value=4e-36 Score=205.76 Aligned_cols=65 Identities=58% Similarity=0.975 Sum_probs=55.2
Q ss_pred CCcCccEEEEEEeCCCCCCcccccccceEEeeecCceEEEeccccchhhhhhccccCCCCcCCCCCCCC
Q psy7364 1 MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFAKGFRDSSRL 69 (73)
Q Consensus 1 mHkY~P~lhi~~~~~~~~~~~~~~~~~~~tf~fpeT~FiaVTaYqN~~ItqLKI~~NPfAkgfR~~~~~ 69 (73)
||||+|||||+++++.. .++.+.+++|+||||+|||||||||++||||||++||||||||+++..
T Consensus 127 mHKY~PrlhI~~~~~~~----~~~~~~~~tf~FpeT~FiAVTaYQN~~It~LKi~~NpFAkgFr~~~~~ 191 (193)
T 1h6f_A 127 MHKYQPRFHIVRANDIL----KLPYSTFRTYLFPETEFIAVTAYQNDKITQLKIDNNPFAKGFRDTGNG 191 (193)
T ss_dssp TEEEEEEEEEECCSCGG----GGGGSCCEEEECGGGCEEEESSCSCHHHHHHHHHHCGGGGGGCC----
T ss_pred CceEeeEEEEEEcCCcc----CCCCcceEEEECCCeEEEEEeccCchhhhhhhhcCCCCCcccccCCCC
Confidence 89999999999986532 234467999999999999999999999999999999999999998764
No 3
>4a04_A T-box transcription factor TBX1; transcription, T-box proteins; HET: DNA; 2.58A {Homo sapiens}
Probab=100.00 E-value=3.5e-35 Score=202.37 Aligned_cols=64 Identities=58% Similarity=0.920 Sum_probs=53.7
Q ss_pred CCcCccEEEEEEeCCCCCCcccccccceEEeeecCceEEEeccccchhhhhhccccCCCCcCCCC
Q psy7364 1 MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFAKGFRD 65 (73)
Q Consensus 1 mHkY~P~lhi~~~~~~~~~~~~~~~~~~~tf~fpeT~FiaVTaYqN~~ItqLKI~~NPfAkgfR~ 65 (73)
||||+|||||+++++.... ..+..+.+++|+||||+|||||||||++||||||++|||||||||
T Consensus 140 mHKYqPrlhIv~~~~~~~~-~~~~~~~~~tf~FpeT~FiAVTaYQN~~It~LKi~~NPFAkgFrd 203 (203)
T 4a04_A 140 MHRYQPRFHVVYVDPRKDS-EKYAEENFKTFVFEETRFTAVTAYQNHRITQLKIASNPFAKGFRD 203 (203)
T ss_dssp TCEEEEEEEEEECCCC---------CCEEEEECGGGCEEEESSCCCHHHHHHHHHHCGGGGGGCC
T ss_pred ccccccEEEEEEcCCCccc-ccccCCceEEEECCCcEEEeeCccCCHHHHHHHhccCCCCcccCC
Confidence 8999999999999865432 123456799999999999999999999999999999999999997
No 4
>1xbr_A Protein (T protein); complex (transcription factor/DNA), transcription factor, DNA-binding protein, transcription/DNA complex; HET: DNA; 2.50A {Xenopus laevis} SCOP: b.2.5.4
Probab=100.00 E-value=3.9e-35 Score=199.77 Aligned_cols=59 Identities=49% Similarity=0.818 Sum_probs=54.3
Q ss_pred CCcCccEEEEEEeCCCCCCcccccccceEEeeecCceEEEeccccchhhhhhccccCCCCcCCCCCC
Q psy7364 1 MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFAKGFRDSS 67 (73)
Q Consensus 1 mHkY~P~lhi~~~~~~~~~~~~~~~~~~~tf~fpeT~FiaVTaYqN~~ItqLKI~~NPfAkgfR~~~ 67 (73)
||||+|||||+++++. ...+++|.||||+|||||||||++||||||++|||||||||++
T Consensus 123 mHKY~PrlhI~~~~~~--------~~~~~tf~FpeT~FiAVTaYQN~~It~LKi~~NpFAkgFr~~~ 181 (184)
T 1xbr_A 123 LHKYEPRIHIVRVGGT--------QRMITSHSFPETQFIAVTAYQNEEITALKIKHNPFAKAFLDAK 181 (184)
T ss_dssp SSEEEEEEEEEEESSS--------SCCEEEEECGGGCEEEESSCCCHHHHHHHHHHCGGGHHHHHHH
T ss_pred CceEEEEEEEEEeCCC--------cceEEEEECCCcEEEEEeccCChhHhhhhhccCCCCcccCCCc
Confidence 8999999999998753 2468999999999999999999999999999999999999864
No 5
>3lkm_A MHCK-A, myosin heavy chain kinase A; protein kinase-like fold, ATP-binding, nucleotide- binding, serine/threonine-protein kinase; HET: AMP; 1.60A {Dictyostelium discoideum} PDB: 3lla_A* 3lmi_A* 3lmh_A* 3pdt_A*
Probab=26.40 E-value=12 Score=26.82 Aligned_cols=28 Identities=32% Similarity=0.597 Sum_probs=19.5
Q ss_pred EEeccccchhhhhhccccCCCCcC-CCCC
Q psy7364 39 TAVTAYQNQLITKLKIDSNPFAKG-FRDS 66 (73)
Q Consensus 39 iaVTaYqN~~ItqLKI~~NPfAkg-fR~~ 66 (73)
-|.|.-=-...+.+||+.=|||+| .|.+
T Consensus 32 ~~~~~~W~~~~i~vk~e~~PFa~GamR~a 60 (307)
T 3lkm_A 32 DPIINKWIRLSMKLKVERKPFAEGALREA 60 (307)
T ss_dssp ETTTTEEEEEEEEEEECSSCSEECSSEEE
T ss_pred cCCCCeEEeeeEEEEecccccccchhhhh
Confidence 333433334578999999999999 5543
No 6
>2ghj_A 50S ribosomal protein L20; folding intermediate, ribosomal protein extension, structural protein; 2.90A {Aquifex aeolicus} PDB: 1gyz_A
Probab=23.51 E-value=30 Score=21.47 Aligned_cols=11 Identities=36% Similarity=0.706 Sum_probs=8.3
Q ss_pred CCCcCCCCCCC
Q psy7364 58 PFAKGFRDSSR 68 (73)
Q Consensus 58 PfAkgfR~~~~ 68 (73)
.+|||||+...
T Consensus 17 k~AkGfrG~~s 27 (118)
T 2ghj_A 17 KLAKGYRGQRS 27 (118)
T ss_dssp -CCSSSCCCCC
T ss_pred HHhcccccccc
Confidence 47999999754
No 7
>2okr_C MAP kinase-activated protein kinase 2; NLS, NES, heterodimer, docking groove, transferase; 2.00A {Homo sapiens}
Probab=21.16 E-value=16 Score=17.04 Aligned_cols=11 Identities=45% Similarity=0.567 Sum_probs=8.3
Q ss_pred hhhhhccccCC
Q psy7364 48 LITKLKIDSNP 58 (73)
Q Consensus 48 ~ItqLKI~~NP 58 (73)
+|.+|+-++||
T Consensus 2 ~iK~L~~snNp 12 (26)
T 2okr_C 2 KIKKIEDASNP 12 (26)
T ss_dssp CCCCTTTCCCH
T ss_pred CccccccccCH
Confidence 46778888887
No 8
>3bbo_S Ribosomal protein L20; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=20.98 E-value=29 Score=21.58 Aligned_cols=11 Identities=36% Similarity=0.613 Sum_probs=8.6
Q ss_pred CCcCCCCCCCC
Q psy7364 59 FAKGFRDSSRL 69 (73)
Q Consensus 59 fAkgfR~~~~~ 69 (73)
+|||||+....
T Consensus 20 ~AkGfrG~~s~ 30 (119)
T 3bbo_S 20 FASSFRGAHSR 30 (119)
T ss_dssp HCSSCSSSTTS
T ss_pred Hhccccccccc
Confidence 69999997643
No 9
>2ftc_L MRPL20 protein; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=18.79 E-value=30 Score=21.51 Aligned_cols=11 Identities=27% Similarity=0.407 Sum_probs=8.5
Q ss_pred CCcCCCCCCCC
Q psy7364 59 FAKGFRDSSRL 69 (73)
Q Consensus 59 fAkgfR~~~~~ 69 (73)
+|||||+....
T Consensus 20 ~AkGfrG~~s~ 30 (118)
T 2ftc_L 20 HARHFRGRKNR 30 (118)
T ss_pred Hhccccccccc
Confidence 68999997543
No 10
>1hdf_A Spherulin 3A; structural protein, crystallins, eye lens, domain interactions, tyrosine corner; 2.35A {Physarum polycephalum} SCOP: b.11.1.1 PDB: 1ag4_A
Probab=18.42 E-value=20 Score=21.21 Aligned_cols=17 Identities=18% Similarity=0.141 Sum_probs=12.4
Q ss_pred ccchhhhhhccccCCCC
Q psy7364 44 YQNQLITKLKIDSNPFA 60 (73)
Q Consensus 44 YqN~~ItqLKI~~NPfA 60 (73)
.-|++|..+||..|+.|
T Consensus 86 g~Nd~ISSi~v~~~~~~ 102 (102)
T 1hdf_A 86 NLNDAISSMIVATFESA 102 (102)
T ss_dssp TCTTCCCEEEEEECC--
T ss_pred CCcccceEEEEeccCCC
Confidence 35788999999988876
Done!