RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7364
(73 letters)
>1h6f_A T-box transcription factor TBX3; transcription factor, TBX3, T-box
transcription factor; 1.7A {Homo sapiens} SCOP: b.2.5.4
Length = 193
Score = 83.7 bits (206), Expect = 2e-22
Identities = 39/68 (57%), Positives = 49/68 (72%), Gaps = 4/68 (5%)
Query: 1 MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFA 60
MH+YQPR H+++ D I L +RTY+FPE+ F AVTAYQN IT+LKID+NPFA
Sbjct: 127 MHKYQPRFHIVRAND----ILKLPYSTFRTYLFPETEFIAVTAYQNDKITQLKIDNNPFA 182
Query: 61 KGFRDSSR 68
KGFRD+
Sbjct: 183 KGFRDTGN 190
>4a04_A T-box transcription factor TBX1; transcription, T-box proteins;
HET: DNA; 2.58A {Homo sapiens}
Length = 203
Score = 78.7 bits (193), Expect = 3e-20
Identities = 37/65 (56%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 1 MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFA 60
MHRYQPR H++ E ++T+VF E+ FTAVTAYQN IT+LKI SNPFA
Sbjct: 140 MHRYQPRFHVVYVDP-RKDSEKYAEENFKTFVFEETRFTAVTAYQNHRITQLKIASNPFA 198
Query: 61 KGFRD 65
KGFRD
Sbjct: 199 KGFRD 203
>1xbr_A Protein (T protein); complex (transcription factor/DNA),
transcription factor, DNA-binding protein,
transcription/DNA complex; HET: DNA; 2.50A {Xenopus
laevis} SCOP: b.2.5.4
Length = 184
Score = 77.1 bits (189), Expect = 8e-20
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 8/68 (11%)
Query: 1 MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFA 60
+H+Y+PRIH+++ I ++ FPE+ F AVTAYQN+ IT LKI NPFA
Sbjct: 123 LHKYEPRIHIVRVGGTQRMI--------TSHSFPETQFIAVTAYQNEEITALKIKHNPFA 174
Query: 61 KGFRDSSR 68
K F D+
Sbjct: 175 KAFLDAKE 182
>2x6u_A T-box transcription factor TBX5; developmental protein,
DNA-binding, HOLT-ORAM-syndrome, IG-fold, nuclear
protein, repressor; HET: PE4; 1.90A {Homo sapiens} PDB:
2x6v_A*
Length = 203
Score = 77.5 bits (190), Expect = 9e-20
Identities = 34/68 (50%), Positives = 47/68 (69%), Gaps = 2/68 (2%)
Query: 1 MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFA 60
MH+YQPR+H++K + + + T+VFPE+ F AVT+YQN IT+LKI++NPFA
Sbjct: 128 MHKYQPRLHIVKADENNGF--GSKNTAFCTHVFPETAFIAVTSYQNHKITQLKIENNPFA 185
Query: 61 KGFRDSSR 68
KGFR S
Sbjct: 186 KGFRGSDD 193
>3emr_A ECTD; double stranded beta helix, oxidoreductase; HET: MSE; 1.85A
{Virgibacillus salexigens}
Length = 310
Score = 29.0 bits (65), Expect = 0.085
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 1 MHRYQPRIHLIKWRDQGTPITDLELEQYRT--YVFPESVFTA--VTAYQNQL 48
+ R P I+ + +D PIT +L+ Y ++ ++ F+ V Q +
Sbjct: 16 LKRKDPVIYTDRSKDNQAPITKEQLDSYEKNGFLQIKNFFSEDEVIDMQKAI 67
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.1 bits (56), Expect = 0.97
Identities = 7/21 (33%), Positives = 10/21 (47%), Gaps = 7/21 (33%)
Query: 45 QNQLITK----LKI---DSNP 58
+ Q + K LK+ DS P
Sbjct: 18 EKQALKKLQASLKLYADDSAP 38
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.6 bits (55), Expect = 2.0
Identities = 8/23 (34%), Positives = 10/23 (43%), Gaps = 5/23 (21%)
Query: 20 ITDLELEQYRTY-----VFPESV 37
+ LE +YR VFP S
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSA 385
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet,
methyltransferase fold, structura genomics,
transferase; HET: SAH; 2.20A {Pyrococcus horikoshii}
SCOP: c.66.1.32
Length = 207
Score = 25.0 bits (54), Expect = 2.3
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 1 MHRYQPRIHLIKWRDQGTPITDLELEQYRT 30
+ + I L K + G + LEQYRT
Sbjct: 3 TRKKELAIALSKLK--GFKNPKVWLEQYRT 30
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein
biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus}
PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Length = 878
Score = 24.9 bits (55), Expect = 2.4
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 9/41 (21%)
Query: 13 WRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLK 53
WR + TP+ ELEQ+ + +TAY +L+ L+
Sbjct: 177 WRHEDTPVEKRELEQW---------YLRITAYAERLLKDLE 208
>2jch_A Penicillin-binding protein 1B; peptidoglycan synthesis
multifunctional enzyme, cell WALL, peptidoglycan, gamma
lactam antibiotics; HET: PL7; 2.4A {Streptococcus
pneumoniae} PDB: 2jci_A* 2je5_A*
Length = 720
Score = 23.9 bits (52), Expect = 5.8
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 15 DQGTPITDLELEQYRTYV----FPESVFTAVTA 43
GT I +E + RT + E++ A+ A
Sbjct: 40 SDGTVIASIESDMLRTSISSEQISENLKKAIIA 72
>3lkm_A MHCK-A, myosin heavy chain kinase A; protein kinase-like fold,
ATP-binding, nucleotide- binding,
serine/threonine-protein kinase; HET: AMP; 1.60A
{Dictyostelium discoideum} PDB: 3lla_A* 3lmi_A* 3lmh_A*
3pdt_A*
Length = 307
Score = 23.5 bits (49), Expect = 8.7
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 37 VFTAVTAYQNQLITKLKIDSNPFAKG-FRDSSRLTDFD 73
F + +L KLK++ PFA+G R++
Sbjct: 30 EFDPIINKWIRLSMKLKVERKPFAEGALREAYHTVSLG 67
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.416
Gapped
Lambda K H
0.267 0.0479 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,093,554
Number of extensions: 48046
Number of successful extensions: 94
Number of sequences better than 10.0: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 13
Length of query: 73
Length of database: 6,701,793
Length adjustment: 43
Effective length of query: 30
Effective length of database: 5,501,190
Effective search space: 165035700
Effective search space used: 165035700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.0 bits)