RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7364
         (73 letters)



>d1h6fa_ b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 184

 Score = 98.0 bits (244), Expect = 2e-28
 Identities = 39/65 (60%), Positives = 48/65 (73%), Gaps = 4/65 (6%)

Query: 1   MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFA 60
           MH+YQPR H+++  D    I  L    +RTY+FPE+ F AVTAYQN  IT+LKID+NPFA
Sbjct: 124 MHKYQPRFHIVRAND----ILKLPYSTFRTYLFPETEFIAVTAYQNDKITQLKIDNNPFA 179

Query: 61  KGFRD 65
           KGFRD
Sbjct: 180 KGFRD 184


>d1xbra_ b.2.5.4 (A:) T domain from Brachyury transcription factor
           {African clawed frog (Xenopus laevis) [TaxId: 8355]}
          Length = 184

 Score = 95.7 bits (238), Expect = 2e-27
 Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 8/68 (11%)

Query: 1   MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFA 60
           +H+Y+PRIH+++                 ++ FPE+ F AVTAYQN+ IT LKI  NPFA
Sbjct: 123 LHKYEPRIHIVRVGG--------TQRMITSHSFPETQFIAVTAYQNEEITALKIKHNPFA 174

Query: 61  KGFRDSSR 68
           K F D+  
Sbjct: 175 KAFLDAKE 182


>d1wlma1 a.39.1.11 (A:8-145) Protein cgi-38 {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 138

 Score = 24.0 bits (52), Expect = 1.7
 Identities = 5/32 (15%), Positives = 13/32 (40%)

Query: 35 ESVFTAVTAYQNQLITKLKIDSNPFAKGFRDS 66
          E  F     + +   +  +++   +AK  +D 
Sbjct: 11 EESFRKFAIHGDPKASGQEMNGKNWAKLCKDC 42


>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1
           {Escherichia coli [TaxId: 562]}
          Length = 344

 Score = 23.9 bits (51), Expect = 2.4
 Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 8/27 (29%)

Query: 10  LIKWRDQGTPITDLELEQYRTYVFPES 36
           L+   D+         ++ RTY FP+ 
Sbjct: 287 LLGSGDRS--------DRNRTYNFPQG 305


>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1
           {Thermotoga maritima [TaxId: 2336]}
          Length = 333

 Score = 22.4 bits (47), Expect = 8.7
 Identities = 6/11 (54%), Positives = 9/11 (81%)

Query: 26  EQYRTYVFPES 36
           E+ RTY FP++
Sbjct: 281 EKIRTYNFPQN 291


>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2)
           {Escherichia coli [TaxId: 562]}
          Length = 362

 Score = 21.9 bits (46), Expect = 9.9
 Identities = 5/11 (45%), Positives = 7/11 (63%)

Query: 26  EQYRTYVFPES 36
            Q R+YV  +S
Sbjct: 318 SQIRSYVLDDS 328


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.137    0.416 

Gapped
Lambda     K      H
   0.267   0.0521    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 269,151
Number of extensions: 9433
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 7
Length of query: 73
Length of database: 2,407,596
Length adjustment: 41
Effective length of query: 32
Effective length of database: 1,844,666
Effective search space: 59029312
Effective search space used: 59029312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.4 bits)