BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7365
(601 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 79/168 (47%), Gaps = 5/168 (2%)
Query: 371 KSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRT 430
+ I Y P+ + E+L F + S + +V + LG V T
Sbjct: 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVST 146
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
S G RKL A AL+ N L LDEPTSG+D R + +++A EG ++++SHNM
Sbjct: 147 YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM 206
Query: 491 EECEALCTKLTIMVNGQFTCLGSATHLKSKYG-----QGYSVKVRCAE 533
E E LC ++ ++ NG G+ LK +Y + + V+C+E
Sbjct: 207 LEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFEEVVKCSE 254
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGK 341
ILDEPTSG+D + R + ++L S G T+++++H M E + L DRIA+I G
Sbjct: 169 ILDEPTSGLDVLNAREVRKIL-----KQASQEGLTILVSSHNMLEVEFLCDRIALIHNGT 223
Query: 342 LQCCGSSVFLKNSF 355
+ G+ LK +
Sbjct: 224 IVETGTVEELKERY 237
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 1/155 (0%)
Query: 369 PQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREV 428
PQK +G Q AL +T +++ F R + +P ++ V E L L Y++R
Sbjct: 84 PQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFP 143
Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTS 487
LSGG +++++ A AL ++ DEP + +D RR L T + + E G + +
Sbjct: 144 HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVT 203
Query: 488 HNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYG 522
H+ EE + ++ ++ G G+ + K G
Sbjct: 204 HDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPG 238
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 41/75 (54%)
Query: 121 TDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKR 180
TD+ +R++G+ Q ALF +TV +++ F + K+VPKD + ++ + +
Sbjct: 80 TDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYA 139
Query: 181 TSLANTLSGGMQRKL 195
+ LSGG Q+++
Sbjct: 140 NRFPHELSGGQQQRV 154
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 269 VLFAMSFVPASTVIL-DEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEA 327
V A + P V+L DEP + +D RR + + +V H G T + TH +EA
Sbjct: 154 VALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQV----HDEMGVTSVFVTHDQEEA 209
Query: 328 DLLGDRIAIIAAGKLQCCGS 347
+ DR+ ++ G ++ G+
Sbjct: 210 LEVADRVLVLHEGNVEQFGT 229
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 80/160 (50%), Gaps = 8/160 (5%)
Query: 368 APQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNL--PSVLLNTIVNESLNKFALGHYSD 425
+P+K I + Q +L + +++LEF R++ + P +L+T + + H D
Sbjct: 68 SPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARD-----LKIEHLLD 122
Query: 426 REVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL 485
R TLSGG +++++ A AL+ N ++ LDEP S +DP + + + + +L
Sbjct: 123 RNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVL 182
Query: 486 -TSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQG 524
+H+ E + ++ ++++G+ +G + K +G
Sbjct: 183 HITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEG 222
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
++LDEP S +DP ++ + E+L V + + L TV+ TH EA ++ DRIA++ G
Sbjct: 149 LLLDEPLSALDPRTQENAREML-SVLHKKNKL---TVLHITHDQTEARIMADRIAVVMDG 204
Query: 341 KLQCCGS 347
KL G
Sbjct: 205 KLIQVGK 211
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 65/145 (44%), Gaps = 13/145 (8%)
Query: 52 FESLSENRDKLGIDSYGISDTSLEE-QPLGPSGITLGLHTLGLEFVSRSMLMGMLPVSSG 110
ESLS +D+ + S E LGP+G TL LE ++ G SG
Sbjct: 4 IESLSRKWKNFSLDNLSLKVESGEYFVILGPTGAG---KTLFLELIA-----GFHVPDSG 55
Query: 111 TAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNM 170
+ D+ TD++ + + Q +LF + V++++ F ++K++ L+ +
Sbjct: 56 RILLDGKDV-TDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTAR- 113
Query: 171 IGDLGIPHKRTSLANTLSGGMQRKL 195
DL I H TLSGG Q+++
Sbjct: 114 --DLKIEHLLDRNPLTLSGGEQQRV 136
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 77/182 (42%), Gaps = 9/182 (4%)
Query: 345 CGSSVFLKNSFARGYYLSLDM--------KSAPQKSYIGYCPQFDALNDRLTPREHLEFY 396
CG S L+ S D+ + P + +G Q AL L+ E++ F
Sbjct: 40 CGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFG 99
Query: 397 SRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDE 456
++ ++N VN+ L H DR+ + LSGG +++++ L+ + LDE
Sbjct: 100 LKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDE 159
Query: 457 PTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSAT 515
P S +D R + I R GR +I +H+ E L K+ ++ G+ +G
Sbjct: 160 PLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPL 219
Query: 516 HL 517
L
Sbjct: 220 EL 221
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Query: 279 STVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIA 338
S +LDEP S +D R ++ I++ H GRT+I TH EA L D+I ++
Sbjct: 153 SVFLLDEPLSNLDAALR---VQMRIEISRL-HKRLGRTMIYVTHDQVEAMTLADKIVVLD 208
Query: 339 AGKLQCCGSSVFL----KNSFARGYYLSLDMKSAPQK 371
AG++ G + L + F G+ S M P K
Sbjct: 209 AGRVAQVGKPLELYHYPADRFVAGFIGSPKMNFLPVK 245
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNA 138
+GPSG G TL M+ G+ ++SG I + + D R +G+ Q A
Sbjct: 35 VGPSG--CGKSTL------LRMIAGLETITSGDLFIGEKRM-NDTPPAERGVGMVFQSYA 85
Query: 139 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKL 195
L+ L+V E+M F +L K++ ++ + L + H LSGG ++++
Sbjct: 86 LYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRV 142
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 77/182 (42%), Gaps = 9/182 (4%)
Query: 345 CGSSVFLKNSFARGYYLSLDM--------KSAPQKSYIGYCPQFDALNDRLTPREHLEFY 396
CG S L+ S D+ + P + +G Q AL L+ E++ F
Sbjct: 40 CGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFG 99
Query: 397 SRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDE 456
++ ++N VN+ L H DR+ + LSGG +++++ L+ + LDE
Sbjct: 100 LKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDE 159
Query: 457 PTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSAT 515
P S +D R + I R GR +I +H+ E L K+ ++ G+ +G
Sbjct: 160 PLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPL 219
Query: 516 HL 517
L
Sbjct: 220 EL 221
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Query: 279 STVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIA 338
S +LDEP S +D R ++ I++ H GRT+I TH EA L D+I ++
Sbjct: 153 SVFLLDEPLSNLDAALR---VQMRIEISRL-HKRLGRTMIYVTHDQVEAMTLADKIVVLD 208
Query: 339 AGKLQCCGSSVFL----KNSFARGYYLSLDMKSAPQK 371
AG++ G + L + F G+ S M P K
Sbjct: 209 AGRVAQVGKPLELYHYPADRFVAGFIGSPKMNFLPVK 245
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNA 138
+GPSG G TL M+ G+ ++SG I + + D R +G+ Q A
Sbjct: 35 VGPSGC--GKSTL------LRMIAGLETITSGDLFIGEKRM-NDTPPAERGVGMVFQSYA 85
Query: 139 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKL 195
L+ L+V E+M F +L K++ ++ + L + H LSGG ++++
Sbjct: 86 LYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRV 142
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 77/182 (42%), Gaps = 9/182 (4%)
Query: 345 CGSSVFLKNSFARGYYLSLDM--------KSAPQKSYIGYCPQFDALNDRLTPREHLEFY 396
CG S L+ S D+ + P + +G Q AL L+ E++ F
Sbjct: 40 CGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFG 99
Query: 397 SRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDE 456
++ ++N VN+ L H DR+ + LSGG +++++ L+ + LD+
Sbjct: 100 LKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQ 159
Query: 457 PTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSAT 515
P S +D R + I R GR +I +H+ E L K+ ++ G+ +G
Sbjct: 160 PLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPL 219
Query: 516 HL 517
L
Sbjct: 220 EL 221
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Query: 279 STVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIA 338
S +LD+P S +D R ++ I++ H GRT+I TH EA L D+I ++
Sbjct: 153 SVFLLDQPLSNLDAALR---VQMRIEISRL-HKRLGRTMIYVTHDQVEAMTLADKIVVLD 208
Query: 339 AGKLQCCGSSVFL----KNSFARGYYLSLDMKSAPQK 371
AG++ G + L + F G+ S M P K
Sbjct: 209 AGRVAQVGKPLELYHYPADRFVAGFIGSPKMNFLPVK 245
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNA 138
+GPSG G TL M+ G+ ++SG I + + D R +G+ Q A
Sbjct: 35 VGPSG--CGKSTL------LRMIAGLETITSGDLFIGEKRM-NDTPPAERGVGMVFQSYA 85
Query: 139 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKL 195
L+ L+V E+M F +L K++ ++ + L + H LSGG ++++
Sbjct: 86 LYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRV 142
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 331 GDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMKSAPQKSYIGYCPQF-------DAL 383
GD +A++ CG S L G + + K +S IG+ PQF L
Sbjct: 31 GDILAVLGQNG---CGKSTLL--DLLLGIHRPIQGKIEVYQS-IGFVPQFFSSPFAYSVL 84
Query: 384 NDRLTPRE-HLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTA 442
+ L R H+ +++ P + ++L+ L H + RE +LSGG ++ + A
Sbjct: 85 DIVLMGRSTHINTFAK----PKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIA 140
Query: 443 IALLGNTPLIFLDEPTSGMDPGARRFLWT-CIERAVSEGRCVILTSHNMEECEALCTKLT 501
A+ LI LDEPTS +D + + + I+ A S+ V+ T+H + A+ K T
Sbjct: 141 RAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANK-T 199
Query: 502 IMVNGQ 507
+++N Q
Sbjct: 200 LLLNKQ 205
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAII 337
++LDEPTS +D ++ + LLI + + + TV+ TTH ++ + ++ ++
Sbjct: 150 ILLDEPTSALDLANQDIVLSLLIDLAQSQN----MTVVFTTHQPNQVVAIANKTLLL 202
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 402 LPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGM 461
LP + V+ +L + + H D+ LS G K++++ A L+ ++ LDEPT+G+
Sbjct: 115 LPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGL 174
Query: 462 DP-GARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 517
DP G + +E G +I+ +H+++ C + +M G+ G+ +
Sbjct: 175 DPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 231
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 110/251 (43%), Gaps = 43/251 (17%)
Query: 143 LTVEEHMWFYSQ----LKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRK---- 194
L VEE + YS LK + ++ + E++ ++G G+ +++L +G ++
Sbjct: 8 LKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGV--GKSTLFQNFNGILKPSSGRI 65
Query: 195 -LDNVKVWFNNKAWIA-----AVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTH 248
DN + ++ K + + F + +N + AS+ +VS + V + P +
Sbjct: 66 LFDNKPIDYSRKGIMKLRESIGIVFQDP-DNQLFSASVYQDVS---FGAVNMKLPEDEIR 121
Query: 249 KQM-------ALETLKKAGTSIL-------VAVTVLFAMSFVPASTVILDEPTSGVDPYS 294
K++ +E LK T L VA+ + M +ILDEPT+G+DP
Sbjct: 122 KRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVME---PKVLILDEPTAGLDPMG 178
Query: 295 RRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGK--LQCCGSSVFLK 352
I +LL+++ G T+I+ TH +D L D + ++ G+ LQ VF +
Sbjct: 179 VSEIMKLLVEM----QKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234
Query: 353 NSFARGYYLSL 363
R L L
Sbjct: 235 KEVIRKVNLRL 245
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 72/156 (46%), Gaps = 11/156 (7%)
Query: 369 PQKSYIGYCPQFDALNDRLTPREHLEFYSRV----RNLPSVLLNTIVNESLNKFALGHYS 424
P++ IG+ PQ AL HL Y + RN+ V + V E K + H
Sbjct: 67 PERRGIGFVPQDYALF------PHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLL 120
Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 484
DR+ LSGG +++++ A AL+ L+ LDEP S +D + L + E I
Sbjct: 121 DRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPI 180
Query: 485 L-TSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 519
L +H++ E L ++ +M+NG+ G L S
Sbjct: 181 LHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFS 216
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNA 138
LGP+G ++ LE ++ G++ G ++ DI T + RR +G PQ A
Sbjct: 30 LGPTGAG---KSVFLELIA-----GIVKPDRGEVRLNGADI-TPLPPERRGIGFVPQDYA 80
Query: 139 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKL 195
LF L+V ++ + L+ V + + M LGI H LSGG ++++
Sbjct: 81 LFPHLSVYRNIAY--GLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRV 135
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 10/177 (5%)
Query: 337 IAAGKLQCCGSSVFLKNSFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLEFY 396
I AG L G +FL S A + L ++ Y+ P + T E + F
Sbjct: 56 ILAGLLAAAGE-IFLDGSPADPFLLRKNV------GYVFQNPSSQIIG--ATVEEDVAFS 106
Query: 397 SRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDE 456
+ L + + + L L + + LSGG K++L+ A L +T + LDE
Sbjct: 107 LEIMGLDESEMRKRIKKVLELVGLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDE 166
Query: 457 PTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 513
P S +DP ++R ++ +E +EG+ +IL +H +E + + L I NG GS
Sbjct: 167 PVSMLDPPSQREIFQVLESLKNEGKGIILVTHELEYLDDMDFILHIS-NGTIDFCGS 222
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 13/77 (16%)
Query: 283 LDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTH---YMDEADLLGDRIAIIAA 339
LDEP S +DP S+R I+++L S G+ +IL TH Y+D+ D I I+
Sbjct: 164 LDEPVSMLDPPSQREIFQVL-----ESLKNEGKGIILVTHELEYLDDMDF----ILHISN 214
Query: 340 GKLQCCGS-SVFLKNSF 355
G + CGS F++ F
Sbjct: 215 GTIDFCGSWEEFVEREF 231
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 50/99 (50%)
Query: 423 YSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC 482
+ DR LSGG KR+++ A ++ ++ LDEP G+D + L +E+ + G+
Sbjct: 131 FKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKT 190
Query: 483 VILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKY 521
VIL SH++E ++ ++ G+ G+ KY
Sbjct: 191 VILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKY 229
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
+ILDEP G+D + L+++ +L G+TVIL +H ++ DR+ ++ G
Sbjct: 160 LILDEPLVGLDREGKTD----LLRIVEKWKTL-GKTVILISHDIETVINHVDRVVVLEKG 214
Query: 341 KLQCCGSSVFLKNSFARGYYLS 362
K G+ + + ++ S
Sbjct: 215 KKVFDGTRMEFLEKYDPRFFTS 236
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 50/99 (50%)
Query: 423 YSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC 482
+ DR LSGG KR+++ A ++ ++ LDEP G+D + L +E+ + G+
Sbjct: 133 FKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKT 192
Query: 483 VILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKY 521
VIL SH++E ++ ++ G+ G+ KY
Sbjct: 193 VILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKY 231
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
+ILDEP G+D + L+++ +L G+TVIL +H ++ DR+ ++ G
Sbjct: 162 LILDEPLVGLDREGKTD----LLRIVEKWKTL-GKTVILISHDIETVINHVDRVVVLEKG 216
Query: 341 KLQCCGSSVFLKNSFARGYYLS 362
K G+ + + ++ S
Sbjct: 217 KKVFDGTRMEFLEKYDPRFFTS 238
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 73/162 (45%), Gaps = 4/162 (2%)
Query: 369 PQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREV 428
P+ IG Q AL LT E++ F + + V E + H +
Sbjct: 79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP 138
Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTS 487
R LSGG +++++ A AL+ + L+ LDEP S +D R ++ S G +++ S
Sbjct: 139 RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVS 198
Query: 488 HNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKV 529
H+ + A+ ++ ++V G+ +G L Y S++V
Sbjct: 199 HDPADIFAIADRVGVLVKGKLVQVGKPEDL---YDNPVSIQV 237
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 279 STVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADL--LGDRIAI 336
S ++LDEP S +D R S L+ +V S G T+++ +H D AD+ + DR+ +
Sbjct: 160 SLLLLDEPFSNLDARMRDSARALVKEV----QSRLGVTLLVVSH--DPADIFAIADRVGV 213
Query: 337 IAAGKLQCCGS 347
+ GKL G
Sbjct: 214 LVKGKLVQVGK 224
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Query: 401 NLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSG 460
N P + V E L+ LG D LSGG K++++ A AL N ++ DE TS
Sbjct: 111 NTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSA 170
Query: 461 MDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQF 508
+DP R + ++ G ++L +H M+ + +C + ++ NG+
Sbjct: 171 LDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGEL 219
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
++ DE TS +DP + RSI ELL + + G T++L TH MD + D +A+I+ G
Sbjct: 162 LLCDEATSALDPATTRSILELLKDI----NRRLGLTILLITHEMDVVKRICDCVAVISNG 217
Query: 341 KL--QCCGSSVF 350
+L Q S VF
Sbjct: 218 ELIEQDTVSEVF 229
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 60/132 (45%), Gaps = 3/132 (2%)
Query: 121 TDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKR 180
+++T RR +G+ Q+ L TV ++ +L PKD + ++ ++ +G+ K
Sbjct: 75 SELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH 134
Query: 181 TSLANTLSGGMQRKLDNVKVWFNNKAWI---AAVSFMNAANNVILRASLPSNVSRDDYAI 237
S + LSGG ++++ + +N + A S ++ A + L R I
Sbjct: 135 DSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTI 194
Query: 238 VAINHPMNLTHK 249
+ I H M++ +
Sbjct: 195 LLITHEMDVVKR 206
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 4/98 (4%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
LSGG K++++ A AL+ N ++ LDE TS +D + + + ++RA EGR I+ +H +
Sbjct: 1218 LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRA-REGRTCIVIAHRL 1276
Query: 491 EEC-EALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSV 527
A C + ++ NG G+ T L S+ G Y +
Sbjct: 1277 NTVMNADC--IAVVSNGTIIEKGTHTQLMSEKGAYYKL 1312
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
LSGG K++++ A AL+ N ++ LDE TS +D + + +++A ++GR I+ +H +
Sbjct: 555 LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKA-AKGRTTIIIAHRL 613
Query: 491 EECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSV 527
++ NGQ +G L ++ G Y +
Sbjct: 614 STIRNADLIISCK-NGQVVEVGDHRALMAQQGLYYDL 649
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 67/150 (44%), Gaps = 1/150 (0%)
Query: 369 PQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREV 428
P+ +G Q AL +T E++ F R R + + V E K + + DR+
Sbjct: 72 PKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKP 131
Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTS 487
LSGG +++++ A AL+ ++ DEP S +D R + I+ E G + +
Sbjct: 132 TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVT 191
Query: 488 HNMEECEALCTKLTIMVNGQFTCLGSATHL 517
H+ E + +++ + G+ G+ +
Sbjct: 192 HDQAEAMTMASRIAVFNQGKLVQYGTPDEV 221
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 70/152 (46%), Gaps = 14/152 (9%)
Query: 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-DMTTIRRSLGVCPQYN 137
LGPSG G T L ML G+ +SG +IY D+ D+ R +G+ Q
Sbjct: 35 LGPSG--CGKTTTLL------MLAGIYKPTSG--EIYFDDVLVNDIPPKYREVGMVFQNY 84
Query: 138 ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDN 197
AL+ +TV E++ F + +++ KD + + + L I + LSGG Q+++
Sbjct: 85 ALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVAL 144
Query: 198 VKVWFNNKAWI---AAVSFMNAANNVILRASL 226
+ + +S ++A +I+RA +
Sbjct: 145 ARALVKQPKVLLFDEPLSNLDANLRMIMRAEI 176
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 79/174 (45%), Gaps = 4/174 (2%)
Query: 352 KNSFARGYYLSLDMKSAPQKSY-IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTI 410
K + + Y+ D+ P K +G Q AL +T +++ F +R P ++
Sbjct: 54 KPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKK 113
Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW 470
V E + +R LSGG +++++ A AL+ ++ LDEP S +D R +
Sbjct: 114 VREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVR 173
Query: 471 TCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSA--THLKSKY 521
++R E G + +H+ E A+ ++ ++ G+ +G+ + K KY
Sbjct: 174 AELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPKY 227
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 279 STVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIA 338
++LDEP S +D R + L ++ G T + TH EA + DRIA+I
Sbjct: 153 EVLLLDEPLSNLDALLRLEVRAELKRL----QKELGITTVYVTHDQAEALAMADRIAVIR 208
Query: 339 AGKLQCCGS 347
G++ G+
Sbjct: 209 EGEILQVGT 217
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 9/117 (7%)
Query: 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNA 138
LGPSG G TL + G+ +SG + D+ T++ R++G+ Q A
Sbjct: 35 LGPSG--SGKSTL------LYTIAGIYKPTSGKIYFDEKDV-TELPPKDRNVGLVFQNWA 85
Query: 139 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKL 195
L+ +TV +++ F +L++ P++ ++ + L I LSGG Q+++
Sbjct: 86 LYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRV 142
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Query: 401 NLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSG 460
N P + V E L+ LG D LSGG K++++ A AL N ++ D+ TS
Sbjct: 134 NTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSA 193
Query: 461 MDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQF 508
+DP R + ++ G ++L +H M+ + +C + ++ NG+
Sbjct: 194 LDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGEL 242
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
++ D+ TS +DP + RSI ELL + + G T++L TH MD + D +A+I+ G
Sbjct: 185 LLCDQATSALDPATTRSILELLKDI----NRRLGLTILLITHEMDVVKRICDCVAVISNG 240
Query: 341 KL--QCCGSSVF 350
+L Q S VF
Sbjct: 241 ELIEQDTVSEVF 252
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 60/132 (45%), Gaps = 3/132 (2%)
Query: 121 TDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKR 180
+++T RR +G+ Q+ L TV ++ +L PKD + ++ ++ +G+ K
Sbjct: 98 SELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH 157
Query: 181 TSLANTLSGGMQRKLDNVKVWFNNKAWI---AAVSFMNAANNVILRASLPSNVSRDDYAI 237
S + LSGG ++++ + +N + A S ++ A + L R I
Sbjct: 158 DSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTI 217
Query: 238 VAINHPMNLTHK 249
+ I H M++ +
Sbjct: 218 LLITHEMDVVKR 229
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 45/100 (45%)
Query: 415 LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIE 474
L L H DR+ LSGG + + AL+ N +I +DEP +G+ PG ++ +
Sbjct: 138 LEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL 197
Query: 475 RAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSA 514
++G ++ H ++ L +M NGQ G
Sbjct: 198 ELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRG 237
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 45/100 (45%)
Query: 415 LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIE 474
L L H DR+ LSGG + + AL+ N +I +DEP +G+ PG ++ +
Sbjct: 138 LEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL 197
Query: 475 RAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSA 514
++G ++ H ++ L +M NGQ G
Sbjct: 198 ELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRG 237
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 69/153 (45%), Gaps = 1/153 (0%)
Query: 369 PQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREV 428
P+ I Q AL +T +++ F ++R +P ++ V E L +R+
Sbjct: 78 PKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP 137
Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTS 487
R LSGG +++++ A++ + +DEP S +D R + +++ + G I +
Sbjct: 138 RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVT 197
Query: 488 HNMEECEALCTKLTIMVNGQFTCLGSATHLKSK 520
H+ E + ++ +M G +GS + K
Sbjct: 198 HDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGK 341
++DEP S +D R + L K+ G T I TH EA +GDRIA++ G
Sbjct: 162 LMDEPLSNLDAKLRVRMRAELKKL----QRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGV 217
Query: 342 LQCCGS--SVFLK--NSFARGYYLSLDM 365
LQ GS V+ K N+F G+ S M
Sbjct: 218 LQQVGSPDEVYDKPANTFVAGFIGSPPM 245
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 72/162 (44%), Gaps = 4/162 (2%)
Query: 369 PQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREV 428
P+ IG Q AL LT E++ F + + V E + H +
Sbjct: 79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP 138
Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTS 487
R LSG +++++ A AL+ + L+ LDEP S +D R ++ S G +++ S
Sbjct: 139 RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVS 198
Query: 488 HNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKV 529
H+ + A+ ++ ++V G+ +G L Y S++V
Sbjct: 199 HDPADIFAIADRVGVLVKGKLVQVGKPEDL---YDNPVSIQV 237
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 279 STVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADL--LGDRIAI 336
S ++LDEP S +D R S L+ +V S G T+++ +H D AD+ + DR+ +
Sbjct: 160 SLLLLDEPFSNLDARMRDSARALVKEV----QSRLGVTLLVVSH--DPADIFAIADRVGV 213
Query: 337 IAAGKLQCCGS 347
+ GKL G
Sbjct: 214 LVKGKLVQVGK 224
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 45/100 (45%)
Query: 415 LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIE 474
L L H DR+ LSGG + + AL+ N +I +D+P +G+ PG ++ +
Sbjct: 138 LEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVL 197
Query: 475 RAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSA 514
++G ++ H ++ L +M NGQ G
Sbjct: 198 ELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRG 237
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%)
Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW 470
+ E + L + +RE++ LSGG ++++ A ALL N F DEP+S +D R
Sbjct: 139 LEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAA 198
Query: 471 TCIERAVSEGRCVILTSHNM 490
I R EG+ V++ H++
Sbjct: 199 RAIRRLSEEGKSVLVVEHDL 218
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEG-RCV 483
DREV LSGG ++++ A LL + + LDEP++ +D R + I + +
Sbjct: 396 DREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTA 455
Query: 484 ILTSHNMEECEALCTKLTIM 503
++ H++ + + +L +
Sbjct: 456 LVVEHDVLXIDYVSDRLXVF 475
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 484
DRE+ LSGG ++++ A ALL F DEP+S +D R + I R +EG+ V+
Sbjct: 223 DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVL 282
Query: 485 LTSHNMEECEALCTKLTIM-----VNGQFTCLGSATHLKSKYGQGY 525
+ H++ + L + ++ V G F+ + +++ QGY
Sbjct: 283 VVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNGINEFLQGY 328
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 408 NTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
N E L + DR V LSGG ++++ A LL + + LDEP++ +D
Sbjct: 449 NFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLD 503
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 484
DRE+ LSGG ++++ A ALL F DEP+S +D R + I R +EG+ V+
Sbjct: 209 DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVL 268
Query: 485 LTSHNMEECEALCTKLTIM-----VNGQFTCLGSATHLKSKYGQGY 525
+ H++ + L + ++ V G F+ + +++ QGY
Sbjct: 269 VVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNGINEFLQGY 314
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 408 NTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
N E L + DR V LSGG ++++ A LL + + LDEP++ +D
Sbjct: 435 NFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLD 489
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 484
+R V+ LSGG K++LS A L N P++ LDE TS +D + + ++ +S+ R +
Sbjct: 473 ERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALD-VLSKDRTTL 530
Query: 485 LTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYG 522
+ +H + K+ ++ NG G+ L +K G
Sbjct: 531 IVAHRLSTITH-ADKIVVIENGHIVETGTHRELIAKQG 567
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 82/171 (47%), Gaps = 15/171 (8%)
Query: 91 LGLEFVSRSMLMGMLP----VSSGTAKIYDHDIRTDMT-TIRRSLGVCPQYNALFDKLTV 145
+G+ +S L+ ++P V+SG I H+I+ +T ++R +G+ Q N LF TV
Sbjct: 373 VGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TV 431
Query: 146 EEHMWF---YSQLKQVPKDLAQLEISNMIGDL--GIPHKRTSLANTLSGGMQRKLDNVKV 200
+E++ + ++V + + I +L G + LSGG +++L ++
Sbjct: 432 KENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARI 491
Query: 201 WFNNKAWI---AAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTH 248
+ NN + A S ++ + I++ +L +S+D ++ + +TH
Sbjct: 492 FLNNPPILILDEATSALDLESESIIQEALDV-LSKDRTTLIVAHRLSTITH 541
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Query: 401 NLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSG 460
N P + V E L+ LG D LSGG K++++ A AL N ++ D+ TS
Sbjct: 134 NTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSA 193
Query: 461 MDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQF 508
+DP R + ++ G ++L +H + + +C + ++ NG+
Sbjct: 194 LDPATTRSILELLKDINRRLGLTILLITHEXDVVKRICDCVAVISNGEL 242
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Query: 267 VTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDE 326
V + A++ P ++ D+ TS +DP + RSI ELL + + G T++L TH D
Sbjct: 172 VAIARALASNP-KVLLCDQATSALDPATTRSILELLKDI----NRRLGLTILLITHEXDV 226
Query: 327 ADLLGDRIAIIAAGKL--QCCGSSVF 350
+ D +A+I+ G+L Q S VF
Sbjct: 227 VKRICDCVAVISNGELIEQDTVSEVF 252
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 39/75 (52%)
Query: 121 TDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKR 180
+++T RR +G Q+ L TV ++ +L PKD + ++ ++ +G+ K
Sbjct: 98 SELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH 157
Query: 181 TSLANTLSGGMQRKL 195
S + LSGG ++++
Sbjct: 158 DSYPSNLSGGQKQRV 172
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 80/182 (43%), Gaps = 9/182 (4%)
Query: 345 CGSSVFLK-------NSFARGYYLSLDMKSAPQKSY-IGYCPQFDALNDRLTPREHLEFY 396
CG + L+ + R Y+ D+ P K I Q A+ +T E++ F
Sbjct: 48 CGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFP 107
Query: 397 SRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDE 456
+++ P ++ V + + +R LSGG +++++ A A++ ++ +DE
Sbjct: 108 LKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDE 167
Query: 457 PTSGMDPGARRFLWTCIERAVSEGRC-VILTSHNMEECEALCTKLTIMVNGQFTCLGSAT 515
P S +D R + I++ + + I +H+ E + ++ +M GQ +GS T
Sbjct: 168 PLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPT 227
Query: 516 HL 517
+
Sbjct: 228 EV 229
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 276 VPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIA 335
V +++DEP S +D R ++ + K+ T I TH EA +GDRIA
Sbjct: 158 VEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKV----TTIYVTHDQVEAMTMGDRIA 213
Query: 336 IIAAGKLQCCGS--SVFLK 352
++ G+L GS V+L+
Sbjct: 214 VMNRGQLLQIGSPTEVYLR 232
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 80/182 (43%), Gaps = 9/182 (4%)
Query: 345 CGSSVFLK-------NSFARGYYLSLDMKSAPQKSY-IGYCPQFDALNDRLTPREHLEFY 396
CG + L+ + R Y+ D+ P K I Q A+ +T E++ F
Sbjct: 49 CGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFP 108
Query: 397 SRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDE 456
+++ P ++ V + + +R LSGG +++++ A A++ ++ +DE
Sbjct: 109 LKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDE 168
Query: 457 PTSGMDPGARRFLWTCIERAVSEGRC-VILTSHNMEECEALCTKLTIMVNGQFTCLGSAT 515
P S +D R + I++ + + I +H+ E + ++ +M GQ +GS T
Sbjct: 169 PLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPT 228
Query: 516 HL 517
+
Sbjct: 229 EV 230
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 276 VPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIA 335
V +++DEP S +D R ++ + K+ T I TH EA +GDRIA
Sbjct: 159 VEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKV----TTIYVTHDQVEAMTMGDRIA 214
Query: 336 IIAAGKLQCCGS--SVFLK 352
++ G+L GS V+L+
Sbjct: 215 VMNRGQLLQIGSPTEVYLR 233
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 16/122 (13%)
Query: 399 VRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPT 458
+RN P NT+V E K L LSGG K++++ A ALL N ++ LDE T
Sbjct: 497 IRNFPQGF-NTVVGE---KGVL----------LSGGQKQRIAIARALLKNPKILLLDEAT 542
Query: 459 SGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 518
S +D + ++R + +GR V++ +H++ + + ++ G+ T G L
Sbjct: 543 SALDAENEYLVQEALDR-LMDGRTVLVIAHHLSTIKN-ANMVAVLDQGKITEYGKHEELL 600
Query: 519 SK 520
SK
Sbjct: 601 SK 602
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 16/122 (13%)
Query: 399 VRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPT 458
+RN P NT+V E K L LSGG K++++ A ALL N ++ LDE T
Sbjct: 466 IRNFPQGF-NTVVGE---KGVL----------LSGGQKQRIAIARALLKNPKILLLDEAT 511
Query: 459 SGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 518
S +D + ++R + +GR V++ +H + + + ++ G+ T G L
Sbjct: 512 SALDAENEYLVQEALDR-LMDGRTVLVIAHRLSTIKN-ANMVAVLDQGKITEYGKHEELL 569
Query: 519 SK 520
SK
Sbjct: 570 SK 571
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
LSGG K++++ A AL+ ++ LDE TS +D + + + +++A EGR I+ +H +
Sbjct: 1172 LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRL 1230
Query: 491 EECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYS-VKVRCAEGRS 536
+ + ++ NG+ G+ L ++ G +S V V+ RS
Sbjct: 1231 STIQN-ADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQAGAKRS 1276
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
LSGG K++++ A AL+ N ++ LDE TS +D + + +++A EGR I+ +H +
Sbjct: 527 LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKA-REGRTTIVIAHRL 585
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
LSGG +++++ A ALL ++P++ LDE TS +D + R + ++ + + R ++ +H +
Sbjct: 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE-LQKNRTSLVIAHRL 539
Query: 491 EECEALCTKLTIMVNGQFTCLGSATHLKSKYG 522
E ++ ++ +G G+ + L +++G
Sbjct: 540 STIEQ-ADEIVVVEDGIIVERGTHSELLAQHG 570
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
LSGG K++++ A AL+ ++ LDE TS +D + + + +++A EGR I+ +H +
Sbjct: 1172 LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRL 1230
Query: 491 EECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYS-VKVRCAEGRS 536
+ + ++ NG+ G+ L ++ G +S V V+ RS
Sbjct: 1231 STIQN-ADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQAGAKRS 1276
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
LSGG K++++ A AL+ N ++ LDE TS +D + + +++A EGR I+ +H +
Sbjct: 527 LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKA-REGRTTIVIAHRL 585
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 53/120 (44%)
Query: 398 RVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEP 457
+VR P E L+K L + +LSGG ++++ A AL ++ DEP
Sbjct: 106 KVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEP 165
Query: 458 TSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 517
TS +DP + + +++ +EG +++ +H M + ++ M G G L
Sbjct: 166 TSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDL 225
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 12/84 (14%)
Query: 259 AGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLS--GRT 316
G + VA+ AM ++ DEPTS +DP E++ +V L+ G T
Sbjct: 141 GGQAQRVAIARALAME---PKIMLFDEPTSALDP-------EMVGEVLSVMKQLANEGMT 190
Query: 317 VILTTHYMDEADLLGDRIAIIAAG 340
+++ TH M A +GDR+ + G
Sbjct: 191 MVVVTHEMGFAREVGDRVLFMDGG 214
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/76 (21%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 121 TDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYS-QLKQVPKDLAQLEISNMIGDLGIPHK 179
T++ +R +G+ Q LF +TV ++ ++++ P++ A+ + ++ +G+ K
Sbjct: 72 TNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDK 131
Query: 180 RTSLANTLSGGMQRKL 195
+ ++LSGG +++
Sbjct: 132 AHAYPDSLSGGQAQRV 147
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 53/120 (44%)
Query: 398 RVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEP 457
+VR P E L+K L + +LSGG ++++ A AL ++ DEP
Sbjct: 127 KVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEP 186
Query: 458 TSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 517
TS +DP + + +++ +EG +++ +H M + ++ M G G L
Sbjct: 187 TSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDL 246
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 12/84 (14%)
Query: 259 AGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLS--GRT 316
G + VA+ AM ++ DEPTS +DP E++ +V L+ G T
Sbjct: 162 GGQAQRVAIARALAME---PKIMLFDEPTSALDP-------EMVGEVLSVMKQLANEGMT 211
Query: 317 VILTTHYMDEADLLGDRIAIIAAG 340
+++ TH M A +GDR+ + G
Sbjct: 212 MVVVTHEMGFAREVGDRVLFMDGG 235
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/76 (21%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 121 TDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYS-QLKQVPKDLAQLEISNMIGDLGIPHK 179
T++ +R +G+ Q LF +TV ++ ++++ P++ A+ + ++ +G+ K
Sbjct: 93 TNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDK 152
Query: 180 RTSLANTLSGGMQRKL 195
+ ++LSGG +++
Sbjct: 153 AHAYPDSLSGGQAQRV 168
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 66/152 (43%), Gaps = 5/152 (3%)
Query: 369 PQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREV 428
P++ + Q AL T +++ F ++R +P ++ V E L +R+
Sbjct: 81 PKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELLNRKP 140
Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGAR---RFLWTCIERAVSEGRCVIL 485
R LSGG +++++ A++ + DEP S +D R R ++R + G I
Sbjct: 141 RELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQL--GVTTIY 198
Query: 486 TSHNMEECEALCTKLTIMVNGQFTCLGSATHL 517
+H+ E ++ + G+ +G+ +
Sbjct: 199 VTHDQVEAXTXGDRIAVXNKGELQQVGTPDEV 230
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGK 341
+ DEP S +D R L K+ G T I TH EA GDRIA+ G+
Sbjct: 165 LXDEPLSNLDAKLRVKXRAELKKL----QRQLGVTTIYVTHDQVEAXTXGDRIAVXNKGE 220
Query: 342 LQCCGS--SVFLK--NSFARGY 359
LQ G+ V+ K N+F G+
Sbjct: 221 LQQVGTPDEVYYKPVNTFVAGF 242
>pdb|3QKU|A Chain A, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
pdb|3QKU|B Chain B, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
Length = 359
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 418 FALGHYSDREVRTLSGGNK------RKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWT 471
F + +R + LSGG + +L+ ++ L G L+ LDEPT +D RR L T
Sbjct: 256 FVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT 315
Query: 472 CIERAVSEGRCVILTSHNME 491
+ER + + VIL SH+ E
Sbjct: 316 IMERYLKKIPQVILVSHDEE 335
>pdb|3QKT|A Chain A, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|B Chain B, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|C Chain C, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|D Chain D, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
Length = 339
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 418 FALGHYSDREVRTLSGGNK------RKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWT 471
F + +R + LSGG + +L+ ++ L G L+ LDEPT +D RR L T
Sbjct: 236 FVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT 295
Query: 472 CIERAVSEGRCVILTSHNME 491
+ER + + VIL SH+ E
Sbjct: 296 IMERYLKKIPQVILVSHDEE 315
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
LSGG ++++S A AL ++ DEPTS +DP + +++ EG+ +++ +H M
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 213
Query: 491 EECEALCTKLTIMVNGQFTCLG 512
+ + + + G+ G
Sbjct: 214 GFARHVSSHVIFLHQGKIEEEG 235
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 10/82 (12%)
Query: 267 VTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLS--GRTVILTTHYM 324
V++ A++ P ++ DEPTS +DP EL+ +V L+ G+T+++ TH M
Sbjct: 162 VSIARALAMEP-DVLLFDEPTSALDP-------ELVGEVLRIMQQLAEEGKTMVVVTHEM 213
Query: 325 DEADLLGDRIAIIAAGKLQCCG 346
A + + + GK++ G
Sbjct: 214 GFARHVSSHVIFLHQGKIEEEG 235
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
LSGG +++++ A AL+ N ++ DE TS +D + + + + + +GR VI+ +H +
Sbjct: 142 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK-ICKGRTVIIIAHRL 200
Query: 491 EECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYS 526
+ ++ +M G+ G L S+ YS
Sbjct: 201 STVKN-ADRIIVMEKGKIVEQGKHKELLSEPESLYS 235
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
LSGG +++++ A AL+ N ++ DE TS +D + + + + + +GR VI+ +H +
Sbjct: 142 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK-ICKGRTVIIIAHRL 200
Query: 491 EECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYS 526
+ ++ +M G+ G L S+ YS
Sbjct: 201 STVKN-ADRIIVMEKGKIVEQGKHKELLSEPESLYS 235
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
LSGG +++++ A AL+ N ++ DE TS +D + + + + + +GR VI+ +H +
Sbjct: 140 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK-ICKGRTVIIIAHRL 198
Query: 491 EECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYS 526
+ ++ +M G+ G L S+ YS
Sbjct: 199 STVKN-ADRIIVMEKGKIVEQGKHKELLSEPESLYS 233
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
LSGG +++++ A AL+ N ++ DE TS +D + + + + + +GR VI+ +H +
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK-ICKGRTVIIIAHRL 204
Query: 491 EECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYS 526
+ ++ +M G+ G L S+ YS
Sbjct: 205 STVKN-ADRIIVMEKGKIVEQGKHKELLSEPESLYS 239
>pdb|1II8|B Chain B, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 174
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 418 FALGHYSDREVRTLSGGNK------RKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWT 471
F + +R + LSGG + +L+ ++ L G L+ LDEPT +D RR L T
Sbjct: 71 FVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT 130
Query: 472 CIERAVSEGRCVILTSHNME 491
+ER + + VIL SH+ E
Sbjct: 131 IMERYLKKIPQVILVSHDEE 150
>pdb|3QKR|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
pdb|3QKS|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
Length = 179
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 418 FALGHYSDREVRTLSGGNK------RKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWT 471
F + +R + LSGG + +L+ ++ L G L+ LDEPT +D RR L T
Sbjct: 76 FVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT 135
Query: 472 CIERAVSEGRCVILTSHNME 491
+ER + + VIL SH+ E
Sbjct: 136 IMERYLKKIPQVILVSHDEE 155
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 489
+LSGG +++++ A ALL + P++ LDE TS +D + R + ++ + + + V++ +H
Sbjct: 480 SLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDE-LQKNKTVLVIAHR 538
Query: 490 MEECE 494
+ E
Sbjct: 539 LSTIE 543
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 83/196 (42%), Gaps = 14/196 (7%)
Query: 330 LGDRIAIIAAGKLQ------CCGSSVFLKNSFAR---GYYLSLDMKSAPQKSYIGYCPQF 380
LGD ++ G+ + G + K +FAR G + + P+K + Y PQ
Sbjct: 279 LGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQR 338
Query: 381 DALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLS 440
N T +++LE S+ S V + LN L + V LSGG +KL
Sbjct: 339 IFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLN---LHRLLESNVNDLSGGELQKLY 395
Query: 441 TAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV-ILTSHNMEECEALCTK 499
A L L LD+P+S +D R + I+R E + V + H++ + + +
Sbjct: 396 IAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADR 455
Query: 500 LTIMVNGQFTCLGSAT 515
+ I+ G+ G AT
Sbjct: 456 I-IVFKGEPEKAGLAT 470
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 484
+++ LSGG ++L A +LL + D+P+S +D R + I R + + + VI
Sbjct: 133 NKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAI-RELLKNKYVI 191
Query: 485 LTSHNMEECEALCTKLTIMVNGQFTCLGSAT 515
+ H++ + L T L ++ G+ + G +
Sbjct: 192 VVDHDLIVLDYL-TDLIHIIYGESSVYGRVS 221
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
LSGG +++++ A ALL ++P++ LDE TS +D + R + ++ + + R ++ +H +
Sbjct: 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE-LQKNRTSLVIAHRL 539
Query: 491 EECE 494
E
Sbjct: 540 STIE 543
>pdb|1F2T|B Chain B, Crystal Structure Of Atp-free Rad50 Abc-atpase
pdb|1F2U|B Chain B, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2U|D Chain D, Crystal Structure Of Rad50 Abc-Atpase
Length = 148
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 418 FALGHYSDREVRTLSGGNK------RKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWT 471
F + +R + LSGG + +L+ ++ L G L+ LDEPT +D RR L T
Sbjct: 45 FVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT 104
Query: 472 CIERAVSEGRCVILTSHNME 491
+ER + + VIL SH+ E
Sbjct: 105 IMERYLKKIPQVILVSHDEE 124
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 422 HYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-G 480
+++ + LSGG +++++ A AL N P+I DEPT +D + +++ E G
Sbjct: 137 RFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDG 196
Query: 481 RCVILTSHNM 490
+ V++ +H++
Sbjct: 197 KTVVVVTHDI 206
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 22/131 (16%)
Query: 397 SRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDE 456
S V N+P LNT V E R V+ +SGG +++L+ A A L N ++ LDE
Sbjct: 120 SFVENMPD-QLNTEVGE------------RGVK-ISGGQRQRLAIARAFLRNPKILMLDE 165
Query: 457 PTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS--- 513
T+ +D + + ++ ++ +GR ++ +H + K+ + GQ T G
Sbjct: 166 ATASLDSESESMVQKALD-SLMKGRTTLVIAHRLSTI-VDADKIYFIEKGQITGSGKHNE 223
Query: 514 --ATH-LKSKY 521
ATH L +KY
Sbjct: 224 LVATHPLYAKY 234
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 12/110 (10%)
Query: 387 LTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYS-DREVRTLSGGNKRKLSTAIAL 445
+T E LEF+ +N+PS+ V L+ LG+ + TLSGG +++ A L
Sbjct: 767 MTVDEALEFF---KNIPSIKRTLQV---LHDVGLGYVKLGQPATTLSGGEAQRIKLASEL 820
Query: 446 ----LGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 491
G T L LDEPT G+ R L + R V G VI+ HN++
Sbjct: 821 RKRDTGRT-LYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD 869
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 422 HYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-G 480
+++ + LSGG +++++ A AL N P+I D+PT +D + +++ E G
Sbjct: 137 RFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDG 196
Query: 481 RCVILTSHNM 490
+ V++ +H++
Sbjct: 197 KTVVVVTHDI 206
>pdb|1US8|B Chain B, The Rad50 Signature Motif: Essential To Atp Binding And
Biological Function
Length = 144
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 418 FALGHYSDREVRTLSGGNK------RKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWT 471
F + +R + L GG + +L+ ++ L G L+ LDEPT +D RR L T
Sbjct: 41 FVVWEGKERPLTFLRGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT 100
Query: 472 CIERAVSEGRCVILTSHNME 491
+ER + + VIL SH+ E
Sbjct: 101 IMERYLKKIPQVILVSHDEE 120
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
++LDEP S +D RR I E +I A+ G++ + +H +EA DRIA++ G
Sbjct: 160 ILLDEPFSALDEQLRRQIREDMIAALRAN----GKSAVFVSHDREEALQYADRIAVMKQG 215
Query: 341 KL 342
++
Sbjct: 216 RI 217
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 424 SDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAV-SEGRC 482
+ R LSGG +++ + A AL + LI LDEP S +D RR + + A+ + G+
Sbjct: 132 AGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKS 191
Query: 483 VILTSHNMEECEALCTKLTIMVNGQF 508
+ SH+ EE ++ +M G+
Sbjct: 192 AVFVSHDREEALQYADRIAVMKQGRI 217
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%)
Query: 415 LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIE 474
L++ LG R+ LSGG +++++ A AL L+F DEPT +D + +
Sbjct: 125 LSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFL 184
Query: 475 RAVSEGRCVILTSHNMEECE 494
+ G +++ +H E E
Sbjct: 185 KINEGGTSIVMVTHERELAE 204
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 70/161 (43%), Gaps = 18/161 (11%)
Query: 112 AKIYDHDIRTDMTTIR-RSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNM 170
K D+ +++ +R R LG Q++ L +LT E++ PK A+ +
Sbjct: 65 GKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYL 124
Query: 171 IGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAA---VSFMNAAN-----NVIL 222
+ +LG+ K + LSGG Q+++ + N + A +++AN ++ L
Sbjct: 125 LSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFL 184
Query: 223 RASLPSNVSRDDYAIVAINHP---MNLTHKQMALETLKKAG 260
+ ++ +IV + H LTH+ + ++ K G
Sbjct: 185 K------INEGGTSIVMVTHERELAELTHRTLEMKDGKVVG 219
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 9/118 (7%)
Query: 260 GTSILVAVTVLFAMSFVPAST---VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRT 316
G V + + A + P T + LDEPTS +D Y ++ LL ++
Sbjct: 145 GEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQE----PLA 200
Query: 317 VILTTHYMDEADLLGDRIAIIAAGKLQCCGS--SVFLKNSFARGYYLSLDMKSAPQKS 372
V H ++ A L DRI ++A GKL CG+ V + + Y L + P+ +
Sbjct: 201 VCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLNAETLTQWYQADLGVSRHPESA 258
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
Query: 424 SDREVRTLSGGNKRKLSTAIALLG-----NTP-LIFLDEPTSGMD 462
+ R+ R LSGG ++++ A L TP +FLDEPTS +D
Sbjct: 135 AQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALD 179
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%)
Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 489
TLSGG ++ L+ AL L+ DEP+ G+ P ++ I++ EG ++L N
Sbjct: 139 TLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQN 198
Query: 490 MEECEALCTKLTIMVNGQFTCLGSATHL 517
+ ++ GQ G A+ L
Sbjct: 199 ALGALKVAHYGYVLETGQIVLEGKASEL 226
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 422 HYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-G 480
+++ + LSGG +++++ A AL N P+I D+PT +D + +++ E G
Sbjct: 137 RFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDG 196
Query: 481 RCVILTSHNM 490
+ V++ +H++
Sbjct: 197 KTVVVVTHDI 206
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
LSGG +++++ A AL+ N ++ DE TS +D + + + + + +GR VI+ + +
Sbjct: 140 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK-ICKGRTVIIIAARL 198
Query: 491 EECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYS 526
+ ++ +M G+ G L S+ YS
Sbjct: 199 STVKN-ADRIIVMEKGKIVEQGKHKELLSEPESLYS 233
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
LSGG +++++ A AL+ N ++ DE TS +D + + + + + +GR VI+ + +
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK-ICKGRTVIIIAARL 204
Query: 491 EECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYS 526
+ ++ +M G+ G L S+ YS
Sbjct: 205 STVKN-ADRIIVMEKGKIVEQGKHKELLSEPESLYS 239
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 75/158 (47%), Gaps = 13/158 (8%)
Query: 369 PQKSYIGYCPQFDALNDRLTPREHLE--FYSRVRNLPSVLLNTIVNESLNKFALGHYSDR 426
PQ+++I Q D+L + + LE +Y V ++L + + S ++ +G
Sbjct: 72 PQQAWI----QNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKG-- 125
Query: 427 EVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCI--ERAVSEGRCVI 484
LSGG K+++S A A+ N + D+P S +D + ++ + + + + + I
Sbjct: 126 --VNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRI 183
Query: 485 LTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYG 522
L +H+M + + +M G+ + +GS L ++ G
Sbjct: 184 LVTHSMSYLPQVDV-IIVMSGGKISEMGSYQELLARDG 220
>pdb|3AUX|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|B Chain B, Crystal Structure Of Rad50 Bound To Adp
pdb|3AV0|B Chain B, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 371
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 56/126 (44%), Gaps = 25/126 (19%)
Query: 386 RLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGH-----YSDREVR----------- 429
R+ R + Y R + +P L+ +NE+ ++F L + D EVR
Sbjct: 222 RIFGRNGFQAYLREKYVP--LIQKYLNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTID 279
Query: 430 TLSGGNK------RKLSTAIALLGN-TPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC 482
LSGG + +L+ A AL+GN I LDEPT +D R L + S +
Sbjct: 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQM 339
Query: 483 VILTSH 488
+I+T H
Sbjct: 340 IIITHH 345
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE--GRCVILTSH 488
LS G K+++ A AL G ++ LDEP +G+D AR L + ++ I +H
Sbjct: 162 LSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAXIYVTH 221
Query: 489 NMEECEALCTKLTIMVNGQFTCLGS 513
+EE A +K+ ++ +GQ G+
Sbjct: 222 FIEEITANFSKILLLKDGQSIQQGA 246
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 13/111 (11%)
Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 484
+R R SGG K++LS A AL+ ++ LD+ TS +DP + + ++R I
Sbjct: 474 ERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFI 533
Query: 485 LTSHNMEECEALCTKLTIMVNGQFTCLGSATHL-----------KSKYGQG 524
+T L K+ ++ G+ G+ L +S++G G
Sbjct: 534 ITQKI--PTALLADKILVLHEGKVAGFGTHKELLEHCKPYREIYESQFGNG 582
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 49/105 (46%), Gaps = 10/105 (9%)
Query: 391 EHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIAL----L 446
E EF+ + + L T+V+ L LG + TLSGG +++ A L
Sbjct: 829 EAAEFFEPIAGV-HRYLRTLVDVGLGYVRLGQPAP----TLSGGEAQRVKLASELQKRST 883
Query: 447 GNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 491
G T I LDEPT+G+ R L I V +G VI+ HN++
Sbjct: 884 GRTVYI-LDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLD 927
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 11/127 (8%)
Query: 371 KSYIGYCPQFDAL-NDRLTPREHLEFYSRVR----NLPSVLLNTIVNESLNKFALGHYSD 425
+S+IG PQ L ND + Y RV + + +++++ F G+ +
Sbjct: 127 RSHIGVVPQDTVLFNDTIADNIR---YGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQ 183
Query: 426 REVR--TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV 483
R LSGG K++++ A +L +I LDE TS +D R + + + V R
Sbjct: 184 VGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAK-VCANRTT 242
Query: 484 ILTSHNM 490
I+ +H +
Sbjct: 243 IVVAHRL 249
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 21/122 (17%)
Query: 390 REHLEFYSRVRNLPSVLLNTIVN---------------ESLNKFALGHYS-DREVRTLSG 433
RE LE + +N+ VL T+ + E+L LG+ + TLSG
Sbjct: 789 RETLEVTYKGKNIAEVLDXTVEDALDFFASIPKIKRKLETLYDVGLGYXKLGQPATTLSG 848
Query: 434 GNKRKLSTAIALL----GNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 489
G +++ A L G T L LDEPT+G+ L + R V G V++ HN
Sbjct: 849 GEAQRVKLAAELHRRSNGRT-LYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHN 907
Query: 490 ME 491
++
Sbjct: 908 LD 909
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 21/122 (17%)
Query: 390 REHLEFYSRVRNLPSVLLNTIVN---------------ESLNKFALGHYS-DREVRTLSG 433
RE LE + +N+ VL T+ + E+L LG+ + TLSG
Sbjct: 789 RETLEVTYKGKNIAEVLDMTVEDALDFFASIPKIKRKLETLYDVGLGYMKLGQPATTLSG 848
Query: 434 GNKRKLSTAIALL----GNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 489
G +++ A L G T L LDEPT+G+ L + R V G V++ HN
Sbjct: 849 GEAQRVKLAAELHRRSNGRT-LYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHN 907
Query: 490 ME 491
++
Sbjct: 908 LD 909
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 21/122 (17%)
Query: 390 REHLEFYSRVRNLPSVLLNTIVN---------------ESLNKFALGHYS-DREVRTLSG 433
RE LE + +N+ VL T+ + E+L LG+ + TLSG
Sbjct: 487 RETLEVTYKGKNIAEVLDMTVEDALDFFASIPKIKRKLETLYDVGLGYMKLGQPATTLSG 546
Query: 434 GNKRKLSTAIALL----GNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 489
G +++ A L G T L LDEPT+G+ L + R V G V++ HN
Sbjct: 547 GEAQRVKLAAELHRRSNGRT-LYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHN 605
Query: 490 ME 491
++
Sbjct: 606 LD 607
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 13/104 (12%)
Query: 399 VRNLPSVLLNTIVNESLNKFALGHYSDREV----RTLSGGNKRKLSTAIALLGNTPLIFL 454
+ + +V + + ++ ++ F G+ D EV LSGG ++ ++ A AL+ L+ L
Sbjct: 123 MEEITAVAMESGAHDFISGFPQGY--DTEVGETGNQLSGGQRQAVALARALIRKPRLLIL 180
Query: 455 DEPTSGMDPG----ARRFLWTCIERAVSEGRCVILTSHNMEECE 494
D+ TS +D G +R L+ E A R V+L +H + E
Sbjct: 181 DQATSALDAGNQLRVQRLLYESPEWA---SRTVLLITHQLSLAE 221
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 428 VRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
+ LSGG K KL+ A A+L N ++ LDEPT+ +D
Sbjct: 546 ISALSGGWKXKLALARAVLRNADILLLDEPTNHLD 580
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 424 SDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR-C 482
S +R LSGG K KL A LI LDEPT+ +D R + +A+ E
Sbjct: 895 SHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD----RDSLGALSKALKEFEGG 950
Query: 483 VILTSHNMEECEALCTKLTIMVNGQFTCLG 512
VI+ +H+ E + L ++ + +G+ T G
Sbjct: 951 VIIITHSAEFTKNLTEEVWAVKDGRXTPSG 980
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 428 VRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
+ LSGG K KL+ A A+L N ++ LDEPT+ +D
Sbjct: 540 ISALSGGWKXKLALARAVLRNADILLLDEPTNHLD 574
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 424 SDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR-C 482
S +R LSGG K KL A LI LDEPT+ +D R + +A+ E
Sbjct: 889 SHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD----RDSLGALSKALKEFEGG 944
Query: 483 VILTSHNMEECEALCTKLTIMVNGQFTCLG 512
VI+ +H+ E + L ++ + +G+ T G
Sbjct: 945 VIIITHSAEFTKNLTEEVWAVKDGRXTPSG 974
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 428 VRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
+ LSGG K KL+ A A+L N ++ LDEPT+ +D
Sbjct: 546 ISALSGGWKMKLALARAVLRNADILLLDEPTNHLD 580
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 424 SDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR-C 482
S +R LSGG K KL A LI LDEPT+ +D R + +A+ E
Sbjct: 895 SHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD----RDSLGALSKALKEFEGG 950
Query: 483 VILTSHNMEECEALCTKLTIMVNGQFTCLG 512
VI+ +H+ E + L ++ + +G+ T G
Sbjct: 951 VIIITHSAEFTKNLTEEVWAVKDGRMTPSG 980
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 47/110 (42%), Gaps = 7/110 (6%)
Query: 410 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTP-------LIFLDEPTSGMD 462
++N+ AL R LSGG +++ A +L TP L+ LD+P + +D
Sbjct: 106 LLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLD 165
Query: 463 PGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLG 512
+ L + +G ++++SH++ + ++ G+ G
Sbjct: 166 VAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASG 215
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
LSGG K+++ A+ALL + ++ LDEPTS +D
Sbjct: 155 LSGGMKQRVLIALALLLDPVVLILDEPTSALD 186
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 269 VLFAMSFVPASTV-ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEA 327
VL A++ + V ILDEPTS +D ++ I I++ + T+I TH + A
Sbjct: 163 VLIALALLLDPVVLILDEPTSALDVLTQAHI----IQLLKELKKMLKITLIFVTHDIAVA 218
Query: 328 DLLGDRIAIIAAGKL 342
L D++A+I G L
Sbjct: 219 AELADKVAVIYGGNL 233
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
LSGG +++++ A LL + ++ DE TS +D +E + + R +I+ +H +
Sbjct: 156 LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVE-DLRKNRTLIIIAHRL 214
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 62/146 (42%), Gaps = 17/146 (11%)
Query: 426 REVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL 485
R++ LSGG ++ + ++ + + DEP+S +D R I ++ + VI
Sbjct: 217 RDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVIC 276
Query: 486 TSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCAEGRSADAQTYLSL 545
H++ + L + ++ G + G T L + +G ++ +L
Sbjct: 277 VEHDLSVLDYL-SDFVCIIYGVPSVYGVVT-LPASVREGINI--------------FLDG 320
Query: 546 NLPVADLVETHATQLQYRISGAVSDL 571
++P +L LQ+RI+ A DL
Sbjct: 321 HIPAENL-RFRTEALQFRIADATEDL 345
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAV 477
D+EV+ LSGG ++++ +AL + +DEP++ +D R I R +
Sbjct: 462 DQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFI 514
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 46/110 (41%), Gaps = 7/110 (6%)
Query: 410 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTP-------LIFLDEPTSGMD 462
++N+ AL R LSGG +++ A +L TP L+ LDEP + +D
Sbjct: 106 LLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLD 165
Query: 463 PGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLG 512
+ L + +G ++ +SH++ + ++ G+ G
Sbjct: 166 VAQQSALDKILSALSQQGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASG 215
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 410 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTP-------LIFLDEPTSGMD 462
++N+ AL R LSGG +++ A +L TP L+ LDEP + +D
Sbjct: 106 LLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLD 165
Query: 463 PGARRFLWTCIERAVSEGRCVILTSHNM 490
+ L + +G ++ +SH++
Sbjct: 166 VAQQSALDKILSALCQQGLAIVXSSHDL 193
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 46/110 (41%), Gaps = 7/110 (6%)
Query: 410 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTP-------LIFLDEPTSGMD 462
++N+ AL R LSGG +++ A +L TP L+ LD+P +D
Sbjct: 106 LLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLD 165
Query: 463 PGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLG 512
+ L + +G ++++SH++ + ++ G+ G
Sbjct: 166 VAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASG 215
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 19/120 (15%)
Query: 391 EHLEFYSRVRNLPSVLLNTI-------VNES--------LNKFALGHYS-DREVRTLSGG 434
E LE R +N+ VL T+ +ES L + LG+ + LSGG
Sbjct: 675 ETLEVEYRGKNIADVLALTVDEAHDFFADESAIFRALDTLREVGLGYLRLGQPATELSGG 734
Query: 435 NKR--KLSTAIALLGNTPLIF-LDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 491
+ KL+T + G ++ LDEPT+G+ P L + + V G VI H M+
Sbjct: 735 EAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQ 794
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 425 DREVRTLSGGNKRKLSTAIALLGN--TPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC 482
DR TLS G ++L A L N + LDEP++G+ P L + +E G
Sbjct: 374 DRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNS 433
Query: 483 VILTSHNME 491
+ + H+++
Sbjct: 434 LFVVEHDLD 442
>pdb|3D0C|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Oceanobacillus Iheyensis At 1.9 A Resolution
pdb|3D0C|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Oceanobacillus Iheyensis At 1.9 A Resolution
Length = 314
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 9/78 (11%)
Query: 460 GMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 519
G+D L IE V G + +EE + + T++T +VNG+ T +
Sbjct: 34 GLDDNVEFLLQNGIEVIVPNGNTGEFYALTIEEAKQVATRVTELVNGRATVVA------- 86
Query: 520 KYGQGYSVKVRCAEGRSA 537
G GYSV G+SA
Sbjct: 87 --GIGYSVDTAIELGKSA 102
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 13/104 (12%)
Query: 399 VRNLPSVLLNTIVNESLNKFALGHYSDREV----RTLSGGNKRKLSTAIALLGNTPLIFL 454
+ + +V + + ++ ++ F G+ D EV LSGG ++ ++ A AL+ L+ L
Sbjct: 123 MEEITAVAMESGAHDFISGFPQGY--DTEVGETGNQLSGGQRQAVALARALIRKPRLLIL 180
Query: 455 DEPTSGMDPG----ARRFLWTCIERAVSEGRCVILTSHNMEECE 494
D TS +D G +R L+ E A R V+L + + E
Sbjct: 181 DNATSALDAGNQLRVQRLLYESPEWA---SRTVLLITQQLSLAE 221
>pdb|2Y69|D Chain D, Bovine Heart Cytochrome C Oxidase Re-Refined With
Molecular Oxygen
pdb|2Y69|Q Chain Q, Bovine Heart Cytochrome C Oxidase Re-Refined With
Molecular Oxygen
Length = 169
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 225 SLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSIL 264
+LPS V R DY + + H NL+ Q AL+ +KA S L
Sbjct: 34 ALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSL 73
>pdb|1OCC|D Chain D, Structure Of Bovine Heart Cytochrome C Oxidase At The
Fully Oxidized State
pdb|1OCC|Q Chain Q, Structure Of Bovine Heart Cytochrome C Oxidase At The
Fully Oxidized State
pdb|2OCC|D Chain D, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|2OCC|Q Chain Q, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|1OCO|D Chain D, Bovine Heart Cytochrome C Oxidase In Carbon Monoxide-bound
State
pdb|1OCO|Q Chain Q, Bovine Heart Cytochrome C Oxidase In Carbon Monoxide-bound
State
pdb|1OCR|D Chain D, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
State
pdb|1OCR|Q Chain Q, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
State
pdb|1OCZ|D Chain D, Bovine Heart Cytochrome C Oxidase In Azide-Bound State
pdb|1OCZ|Q Chain Q, Bovine Heart Cytochrome C Oxidase In Azide-Bound State
pdb|1V54|D Chain D, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|1V54|Q Chain Q, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|1V55|D Chain D, Bovine Heart Cytochrome C Oxidase At The Fully Reduced
State
pdb|1V55|Q Chain Q, Bovine Heart Cytochrome C Oxidase At The Fully Reduced
State
pdb|2DYR|D Chain D, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|2DYR|Q Chain Q, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|2DYS|D Chain D, Bovine Heart Cytochrome C Oxidase Modified By Dccd
pdb|2DYS|Q Chain Q, Bovine Heart Cytochrome C Oxidase Modified By Dccd
pdb|2EIJ|D Chain D, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
State
pdb|2EIJ|Q Chain Q, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
State
pdb|2EIK|D Chain D, Cadmium Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Reduced State
pdb|2EIK|Q Chain Q, Cadmium Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Reduced State
pdb|2EIL|D Chain D, Cadmium Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Oxidized State
pdb|2EIL|Q Chain Q, Cadmium Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Oxidized State
pdb|2EIM|D Chain D, Zinc Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Reduced State
pdb|2EIM|Q Chain Q, Zinc Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Reduced State
pdb|2EIN|D Chain D, Zinc Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Oxidized State
pdb|2EIN|Q Chain Q, Zinc Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Oxidized State
pdb|2ZXW|D Chain D, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (1-S X-Ray Exposure Dataset)
pdb|2ZXW|Q Chain Q, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (1-S X-Ray Exposure Dataset)
pdb|3ABL|D Chain D, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (15-S X-Ray Exposure Dataset)
pdb|3ABL|Q Chain Q, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (15-S X-Ray Exposure Dataset)
pdb|3ABM|D Chain D, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (200-S X-Ray Exposure Dataset)
pdb|3ABM|Q Chain Q, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (200-S X-Ray Exposure Dataset)
pdb|3ABK|D Chain D, Bovine Heart Cytochrome C Oxidase At The No-Bound Fully
Reduced State (50k)
pdb|3ABK|Q Chain Q, Bovine Heart Cytochrome C Oxidase At The No-Bound Fully
Reduced State (50k)
pdb|3AG1|D Chain D, Bovine Heart Cytochrome C Oxidase In The Carbon
Monoxide-Bou Reduced State At 280 K
pdb|3AG1|Q Chain Q, Bovine Heart Cytochrome C Oxidase In The Carbon
Monoxide-Bou Reduced State At 280 K
pdb|3AG2|D Chain D, Bovine Heart Cytochrome C Oxidase In The Carbon
Monoxide-Bou Reduced State At 100 K
pdb|3AG2|Q Chain Q, Bovine Heart Cytochrome C Oxidase In The Carbon
Monoxide-Bou Reduced State At 100 K
pdb|3AG3|D Chain D, Bovine Heart Cytochrome C Oxidase In The Nitric
Oxide-Bound Reduced State At 100 K
pdb|3AG3|Q Chain Q, Bovine Heart Cytochrome C Oxidase In The Nitric
Oxide-Bound Reduced State At 100 K
pdb|3AG4|D Chain D, Bovine Heart Cytochrome C Oxidase In The Cyanide Ion-Bound
F Reduced State At 100 K
pdb|3AG4|Q Chain Q, Bovine Heart Cytochrome C Oxidase In The Cyanide Ion-Bound
F Reduced State At 100 K
pdb|3ASN|D Chain D, Bovine Heart Cytochrome C Oxidase In The Fully Oxidized
State Measured At 1.7470 Angstrom Wavelength
pdb|3ASN|Q Chain Q, Bovine Heart Cytochrome C Oxidase In The Fully Oxidized
State Measured At 1.7470 Angstrom Wavelength
pdb|3ASO|D Chain D, Bovine Heart Cytochrome C Oxidase In The Fully Oxidized
State Measured At 0.9 Angstrom Wavelength
pdb|3ASO|Q Chain Q, Bovine Heart Cytochrome C Oxidase In The Fully Oxidized
State Measured At 0.9 Angstrom Wavelength
pdb|2YBB|O Chain O, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 147
Score = 32.0 bits (71), Expect = 0.91, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 225 SLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSIL 264
+LPS V R DY + + H NL+ Q AL+ +KA S L
Sbjct: 12 ALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSL 51
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 72/156 (46%), Gaps = 18/156 (11%)
Query: 374 IGYCPQFDALNDRLTPREHLEF---YSRVRNLPSVLLNTIVNESLNKFA------LGHYS 424
I +C QF + T +E++ F Y R SV+ + E ++KFA LG
Sbjct: 83 ISFCSQFSWIMPG-TIKENIIFGVSYDEYR-YRSVIKACQLEEDISKFAEKDNIVLGEGG 140
Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGRCV 483
TLSGG + ++S A A+ + L LD P +D + ++ +C+ + ++ +
Sbjct: 141 ----ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA-NKTR 195
Query: 484 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 519
IL + ME + K+ I+ G G+ + L++
Sbjct: 196 ILVTSKMEHLKK-ADKILILHEGSSYFYGTFSELQN 230
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 489
LS G+K+ + A ++L ++ LDEP++ +DP + + +++A ++ C ++
Sbjct: 155 VLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFAD--CTVILCEA 212
Query: 490 MEECEALCTKLTIM 503
E C + ++
Sbjct: 213 RIEAMLECDQFLVI 226
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 72/156 (46%), Gaps = 18/156 (11%)
Query: 374 IGYCPQFDALNDRLTPREHLEF---YSRVRNLPSVLLNTIVNESLNKFA------LGHYS 424
I +C QF + T +E++ F Y R SV+ + E ++KFA LG
Sbjct: 71 ISFCSQFSWIMPG-TIKENIIFGVSYDEYR-YRSVIKACQLEEDISKFAEKDNIVLGEGG 128
Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGRCV 483
TLSGG + ++S A A+ + L LD P +D + ++ +C+ + ++ +
Sbjct: 129 ----ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN-KTR 183
Query: 484 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 519
IL + ME + K+ I+ G G+ + L++
Sbjct: 184 ILVTSKMEHLKK-ADKILILHEGSSYFYGTFSELQN 218
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 426 REVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL 485
R++ LS G + T++AL ++ LDEP +D R + I+ EG IL
Sbjct: 124 RKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEG---IL 180
Query: 486 TSHNME 491
+H ++
Sbjct: 181 VTHELD 186
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 16/155 (10%)
Query: 374 IGYCPQFDALNDRLTPREHLEF---YSRVRNLPSVLLNTIVNESLNKFALGHYSDREVR- 429
+ +C QF + T +E++ F Y R SV+ + + + KFA D V
Sbjct: 101 VSFCSQFSWIMPG-TIKENIIFGVSYDEYR-YKSVVKACQLQQDITKFA---EQDNTVLG 155
Query: 430 ----TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGRCVI 484
TLSGG + ++S A A+ + L LD P +D ++ +C+ + ++ + I
Sbjct: 156 EGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA-NKTRI 214
Query: 485 LTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 519
L + ME K+ I+ G G+ + L+S
Sbjct: 215 LVTSKMEHLRK-ADKILILHQGSSYFYGTFSELQS 248
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 16/155 (10%)
Query: 374 IGYCPQFDALNDRLTPREHLEF---YSRVRNLPSVLLNTIVNESLNKFALGHYSDREVR- 429
+ +C QF + T +E++ F Y R SV+ + + + KFA D V
Sbjct: 101 VSFCSQFSWIMPG-TIKENIIFGVSYDEYR-YKSVVKACQLQQDITKFA---EQDNTVLG 155
Query: 430 ----TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGRCVI 484
TLSGG + ++S A A+ + L LD P +D ++ +C+ + ++ + I
Sbjct: 156 EGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA-NKTRI 214
Query: 485 LTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 519
L + ME K+ I+ G G+ + L+S
Sbjct: 215 LVTSKMEHLRK-ADKILILHQGSSYFYGTFSELQS 248
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 70/158 (44%), Gaps = 23/158 (14%)
Query: 374 IGYCPQFD-----ALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFA------LGH 422
I +C QF + + + + E+ R SV+ + E ++KFA LG
Sbjct: 71 ISFCSQFSWIMPGTIKENIIGVSYDEYRYR-----SVIKACQLEEDISKFAEKDNIVLGE 125
Query: 423 YSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGR 481
TLSGG + ++S A A+ + L LD P +D + ++ +C+ + ++ +
Sbjct: 126 GG----ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN-K 180
Query: 482 CVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 519
IL + ME + K+ I+ G G+ + L++
Sbjct: 181 TRILVTSKMEHLKK-ADKILILHEGSSYFYGTFSELQN 217
>pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima
pdb|1E69|B Chain B, Smc Head Domain From Thermotoga Maritima
pdb|1E69|C Chain C, Smc Head Domain From Thermotoga Maritima
pdb|1E69|D Chain D, Smc Head Domain From Thermotoga Maritima
pdb|1E69|E Chain E, Smc Head Domain From Thermotoga Maritima
pdb|1E69|F Chain F, Smc Head Domain From Thermotoga Maritima
Length = 322
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 255 TLKKAGTSILVAVTVLFA-MSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLS 313
+L G LV + +LFA M P+ +LDE S +D Y+ LL + + H+
Sbjct: 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKE--NSKHT-- 273
Query: 314 GRTVILTTH---YMDEADLL 330
I+ TH M+ ADLL
Sbjct: 274 --QFIVITHNKIVMEAADLL 291
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGRCVILTSH 488
TLSGG + ++S A A+ + L LD P +D ++ +C+ + ++ + IL +
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA-NKTRILVTS 217
Query: 489 NMEECEALCTKLTIMVNGQFTCLGSATHLKS 519
ME K+ I+ G G+ + L+S
Sbjct: 218 KMEHLRK-ADKILILHQGSSYFYGTFSELQS 247
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGRCVILTSH 488
TLSGG + ++S A A+ + L LD P +D ++ +C+ + ++ + IL +
Sbjct: 160 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA-NKTRILVTS 218
Query: 489 NMEECEALCTKLTIMVNGQFTCLGSATHLKS 519
ME K+ I+ G G+ + L+S
Sbjct: 219 KMEHLRK-ADKILILHQGSSYFYGTFSELQS 248
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGRCVILTSH 488
TLSGG + ++S A A+ + L LD P +D ++ +C+ + ++ + IL +
Sbjct: 160 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA-NKTRILVTS 218
Query: 489 NMEECEALCTKLTIMVNGQFTCLGSATHLKS 519
ME K+ I+ G G+ + L+S
Sbjct: 219 KMEHLRK-ADKILILHQGSSYFYGTFSELQS 248
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGRCVILTSH 488
TLSGG + ++S A A+ + L LD P +D + ++ +C+ + ++ + IL +
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA-NKTRILVTS 217
Query: 489 NMEECEALCTKLTIMVNGQFTCLGSATHLKS 519
ME + K+ I+ G G+ + L++
Sbjct: 218 KMEHLKK-ADKILILHEGSSYFYGTFSELQN 247
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGRCVILTSH 488
TLSGG + ++S A A+ + L LD P +D + ++ +C+ + ++ + IL +
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA-NKTRILVTS 217
Query: 489 NMEECEALCTKLTIMVNGQFTCLGSATHLKS 519
ME + K+ I+ G G+ + L++
Sbjct: 218 KMEHLKK-ADKILILHEGSSYFYGTFSELQN 247
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGRCVILTSH 488
TLSGG + ++S A A+ + L LD P +D + ++ +C+ + ++ + IL +
Sbjct: 160 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA-NKTRILVTS 218
Query: 489 NMEECEALCTKLTIMVNGQFTCLGSATHLKS 519
ME + K+ I+ G G+ + L++
Sbjct: 219 KMEHLKK-ADKILILHEGSSYFYGTFSELQN 248
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,716,547
Number of Sequences: 62578
Number of extensions: 662619
Number of successful extensions: 1647
Number of sequences better than 100.0: 106
Number of HSP's better than 100.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1463
Number of HSP's gapped (non-prelim): 189
length of query: 601
length of database: 14,973,337
effective HSP length: 104
effective length of query: 497
effective length of database: 8,465,225
effective search space: 4207216825
effective search space used: 4207216825
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)