Query psy7365
Match_columns 601
No_of_seqs 777 out of 3835
Neff 6.6
Searched_HMMs 29240
Date Sat Aug 17 00:52:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7365.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7365hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yqt_A RNAse L inhibitor; ATP- 100.0 1.3E-58 4.5E-63 516.8 20.7 364 53-519 25-493 (538)
2 3bk7_A ABC transporter ATP-bin 100.0 4.3E-58 1.5E-62 518.5 22.6 364 53-519 95-563 (607)
3 3g5u_A MCG1178, multidrug resi 100.0 1.1E-54 3.8E-59 527.5 30.5 204 50-345 388-605 (1284)
4 3ux8_A Excinuclease ABC, A sub 100.0 7.7E-55 2.6E-59 498.7 24.9 366 65-519 30-640 (670)
5 3ozx_A RNAse L inhibitor; ATP 100.0 2.6E-55 8.9E-60 489.7 18.5 341 79-518 31-476 (538)
6 3j16_B RLI1P; ribosome recycli 100.0 4.8E-55 1.6E-59 493.2 16.0 366 54-520 82-560 (608)
7 4f4c_A Multidrug resistance pr 100.0 3.7E-51 1.3E-55 497.7 25.0 199 50-344 416-632 (1321)
8 2iw3_A Elongation factor 3A; a 100.0 2.9E-51 9.8E-56 478.9 18.3 351 46-513 433-981 (986)
9 3tui_C Methionine import ATP-b 100.0 3.2E-46 1.1E-50 396.3 20.0 220 44-348 19-248 (366)
10 3fvq_A Fe(3+) IONS import ATP- 100.0 1.9E-45 6.3E-50 390.1 16.0 212 49-349 4-224 (359)
11 3rlf_A Maltose/maltodextrin im 100.0 5.1E-45 1.7E-49 389.3 17.7 211 50-350 4-220 (381)
12 3gfo_A Cobalt import ATP-bindi 100.0 8.4E-45 2.9E-49 373.1 16.9 215 47-349 5-229 (275)
13 3pih_A Uvrabc system protein A 100.0 4.9E-44 1.7E-48 417.4 24.8 320 97-520 384-903 (916)
14 2r6f_A Excinuclease ABC subuni 100.0 1.4E-43 4.7E-48 411.5 28.2 295 139-519 448-942 (972)
15 1z47_A CYSA, putative ABC-tran 100.0 4.6E-44 1.6E-48 379.3 18.7 213 46-348 11-230 (355)
16 3tif_A Uncharacterized ABC tra 100.0 8.8E-44 3E-48 357.5 18.5 212 51-348 3-229 (235)
17 2pcj_A ABC transporter, lipopr 100.0 1.4E-43 4.7E-48 353.5 19.6 208 49-347 4-222 (224)
18 2olj_A Amino acid ABC transpor 100.0 1.2E-43 4.2E-48 362.3 19.5 210 49-348 24-243 (263)
19 1b0u_A Histidine permease; ABC 100.0 6.4E-44 2.2E-48 364.1 17.3 210 49-348 6-237 (262)
20 1vpl_A ABC transporter, ATP-bi 100.0 1.5E-43 5.1E-48 360.3 18.8 211 48-348 14-230 (256)
21 2it1_A 362AA long hypothetical 100.0 1.3E-43 4.5E-48 376.8 18.4 210 50-349 4-219 (362)
22 2yyz_A Sugar ABC transporter, 100.0 9.2E-44 3.1E-48 377.7 16.0 210 50-349 4-219 (359)
23 1g29_1 MALK, maltose transport 100.0 1.9E-43 6.6E-48 377.2 16.8 211 50-349 4-225 (372)
24 1v43_A Sugar-binding transport 100.0 1.5E-43 5.1E-48 377.7 15.8 211 49-349 11-227 (372)
25 1oxx_K GLCV, glucose, ABC tran 100.0 1E-43 3.5E-48 377.0 13.8 210 50-348 4-225 (353)
26 2ygr_A Uvrabc system protein A 100.0 5.9E-42 2E-46 399.1 29.1 299 136-520 462-961 (993)
27 1g6h_A High-affinity branched- 100.0 2.5E-43 8.5E-48 358.7 15.4 210 49-348 7-237 (257)
28 4g1u_C Hemin import ATP-bindin 100.0 4.3E-43 1.5E-47 358.8 16.7 217 48-349 10-233 (266)
29 3d31_A Sulfate/molybdate ABC t 100.0 7.3E-43 2.5E-47 369.5 17.2 204 51-348 3-212 (348)
30 1ji0_A ABC transporter; ATP bi 100.0 1.1E-42 3.6E-47 350.7 16.2 209 49-348 6-223 (240)
31 2onk_A Molybdate/tungstate ABC 100.0 1.3E-42 4.3E-47 350.3 12.4 204 51-348 3-211 (240)
32 2vf7_A UVRA2, excinuclease ABC 100.0 6.7E-41 2.3E-45 388.1 26.0 111 409-520 708-828 (842)
33 2yz2_A Putative ABC transporte 100.0 1.5E-41 5E-46 347.4 15.5 209 50-347 3-221 (266)
34 2ihy_A ABC transporter, ATP-bi 100.0 1.4E-41 4.8E-46 349.9 13.1 210 49-348 21-247 (279)
35 2d2e_A SUFC protein; ABC-ATPas 100.0 1.2E-40 4.1E-45 337.6 13.8 209 50-348 4-228 (250)
36 2zu0_C Probable ATP-dependent 100.0 7.8E-40 2.7E-44 334.8 16.8 210 49-348 20-249 (267)
37 2nq2_C Hypothetical ABC transp 100.0 1.2E-39 4.1E-44 331.0 17.9 198 50-348 5-212 (253)
38 1sgw_A Putative ABC transporte 100.0 1.7E-40 5.7E-45 329.3 9.9 191 50-338 11-207 (214)
39 2qi9_C Vitamin B12 import ATP- 100.0 9.1E-40 3.1E-44 331.1 15.5 206 50-348 5-217 (249)
40 2ixe_A Antigen peptide transpo 100.0 1E-39 3.6E-44 334.6 14.8 211 49-348 16-240 (271)
41 2ff7_A Alpha-hemolysin translo 100.0 2.8E-39 9.7E-44 327.1 15.1 201 51-348 9-227 (247)
42 3nh6_A ATP-binding cassette SU 100.0 5.5E-39 1.9E-43 334.4 13.3 206 50-349 54-273 (306)
43 1mv5_A LMRA, multidrug resista 100.0 4.5E-39 1.5E-43 324.6 8.8 201 51-348 3-221 (243)
44 2pjz_A Hypothetical protein ST 100.0 4E-38 1.4E-42 321.5 13.8 201 51-349 3-211 (263)
45 2ghi_A Transport protein; mult 100.0 1.4E-37 4.7E-42 317.0 15.3 202 50-348 18-237 (260)
46 3gd7_A Fusion complex of cysti 100.0 5.6E-38 1.9E-42 336.7 10.6 202 50-350 20-239 (390)
47 2pze_A Cystic fibrosis transme 100.0 1.8E-36 6E-41 303.1 14.0 189 50-348 7-213 (229)
48 3fvq_A Fe(3+) IONS import ATP- 100.0 5.1E-36 1.8E-40 317.7 17.7 204 311-520 13-229 (359)
49 3tui_C Methionine import ATP-b 100.0 5.1E-36 1.8E-40 318.1 17.1 195 322-519 45-253 (366)
50 3rlf_A Maltose/maltodextrin im 100.0 8.6E-36 2.9E-40 318.1 18.7 203 311-519 12-223 (381)
51 2cbz_A Multidrug resistance-as 100.0 3.8E-36 1.3E-40 302.3 11.9 195 50-348 4-212 (237)
52 3b5x_A Lipid A export ATP-bind 100.0 7.6E-36 2.6E-40 336.4 15.1 205 49-349 341-563 (582)
53 1b0u_A Histidine permease; ABC 100.0 2.9E-35 1E-39 300.1 17.8 202 312-519 16-242 (262)
54 2olj_A Amino acid ABC transpor 100.0 3.9E-35 1.3E-39 299.4 18.6 203 311-519 33-248 (263)
55 2yl4_A ATP-binding cassette SU 100.0 1.4E-35 4.7E-40 335.0 16.0 207 50-350 342-567 (595)
56 1vpl_A ABC transporter, ATP-bi 100.0 4.7E-35 1.6E-39 297.7 18.4 203 313-521 26-237 (256)
57 3gfo_A Cobalt import ATP-bindi 100.0 2.4E-35 8.3E-40 302.8 15.9 195 322-519 25-233 (275)
58 1z47_A CYSA, putative ABC-tran 100.0 5.8E-35 2E-39 309.5 18.4 195 322-519 32-235 (355)
59 1g29_1 MALK, maltose transport 100.0 5.8E-35 2E-39 311.7 18.6 202 312-519 13-229 (372)
60 3b60_A Lipid A export ATP-bind 100.0 1E-35 3.5E-40 335.3 13.3 205 49-349 341-563 (582)
61 4a82_A Cystic fibrosis transme 100.0 1.5E-35 5E-40 333.8 14.4 204 50-350 340-561 (578)
62 2it1_A 362AA long hypothetical 100.0 7.3E-35 2.5E-39 309.7 18.9 202 312-519 13-223 (362)
63 3qf4_A ABC transporter, ATP-bi 100.0 1.2E-35 4.1E-40 335.0 13.2 208 50-350 342-563 (587)
64 2yyz_A Sugar ABC transporter, 100.0 4.7E-35 1.6E-39 310.8 16.8 202 312-519 13-223 (359)
65 3qf4_B Uncharacterized ABC tra 100.0 1.4E-35 4.8E-40 335.2 13.2 203 50-350 355-575 (598)
66 1oxx_K GLCV, glucose, ABC tran 100.0 4.9E-35 1.7E-39 310.4 14.4 195 322-519 22-230 (353)
67 2pcj_A ABC transporter, lipopr 100.0 1.9E-34 6.5E-39 287.5 17.6 188 322-513 21-222 (224)
68 1v43_A Sugar-binding transport 100.0 9.1E-35 3.1E-39 310.0 16.0 202 312-519 21-231 (372)
69 1g6h_A High-affinity branched- 100.0 1.5E-34 5.2E-39 294.0 15.8 199 312-516 17-239 (257)
70 3tif_A Uncharacterized ABC tra 100.0 2E-34 7E-39 289.3 16.2 193 322-518 22-233 (235)
71 3d31_A Sulfate/molybdate ABC t 100.0 2.9E-34 9.8E-39 303.7 16.1 192 322-519 17-217 (348)
72 2onk_A Molybdate/tungstate ABC 100.0 3E-34 1E-38 289.1 15.0 193 322-520 16-217 (240)
73 1ji0_A ABC transporter; ATP bi 100.0 4.6E-34 1.6E-38 287.6 16.1 201 312-519 16-228 (240)
74 4g1u_C Hemin import ATP-bindin 100.0 6.7E-34 2.3E-38 290.8 16.0 199 312-518 21-236 (266)
75 2yz2_A Putative ABC transporte 100.0 1.7E-33 5.9E-38 287.6 15.1 196 322-521 24-229 (266)
76 2bbs_A Cystic fibrosis transme 100.0 6.9E-34 2.4E-38 294.1 11.8 185 49-348 40-242 (290)
77 2nq2_C Hypothetical ABC transp 100.0 1.4E-32 4.8E-37 279.0 17.3 190 314-518 17-216 (253)
78 2ihy_A ABC transporter, ATP-bi 100.0 4.3E-33 1.5E-37 286.6 11.5 202 311-518 30-251 (279)
79 1tf7_A KAIC; homohexamer, hexa 100.0 1.2E-35 4E-40 330.9 -9.5 314 65-507 24-444 (525)
80 4f4c_A Multidrug resistance pr 100.0 1.2E-32 4.1E-37 335.3 14.8 208 50-351 1077-1302(1321)
81 2d2e_A SUFC protein; ABC-ATPas 100.0 6.9E-32 2.4E-36 273.3 16.7 200 312-517 13-231 (250)
82 2qi9_C Vitamin B12 import ATP- 100.0 2.3E-32 8E-37 276.7 13.1 188 322-518 17-221 (249)
83 3bk7_A ABC transporter ATP-bin 100.0 8.8E-32 3E-36 303.9 17.3 198 46-349 354-559 (607)
84 2zu0_C Probable ATP-dependent 100.0 1.1E-31 3.6E-36 274.6 15.8 203 311-519 29-254 (267)
85 3g5u_A MCG1178, multidrug resi 100.0 3.2E-32 1.1E-36 330.8 13.1 207 50-350 1031-1255(1284)
86 3ozx_A RNAse L inhibitor; ATP 100.0 7.3E-32 2.5E-36 300.7 14.0 191 46-340 266-462 (538)
87 1yqt_A RNAse L inhibitor; ATP- 100.0 8.3E-32 2.8E-36 300.6 12.9 198 46-349 284-489 (538)
88 2pjz_A Hypothetical protein ST 100.0 5.3E-31 1.8E-35 268.9 14.1 185 322-519 22-215 (263)
89 2ixe_A Antigen peptide transpo 100.0 3.5E-31 1.2E-35 271.3 12.8 197 315-520 32-246 (271)
90 2ff7_A Alpha-hemolysin translo 100.0 6.7E-31 2.3E-35 265.7 12.6 192 314-520 21-233 (247)
91 1mv5_A LMRA, multidrug resista 100.0 9.8E-31 3.4E-35 263.7 9.6 193 314-520 14-227 (243)
92 3nh6_A ATP-binding cassette SU 100.0 4.2E-30 1.4E-34 267.5 13.8 192 314-520 66-278 (306)
93 1sgw_A Putative ABC transporte 100.0 4.4E-31 1.5E-35 261.6 6.1 174 322-503 26-206 (214)
94 3j16_B RLI1P; ribosome recycli 100.0 4.6E-30 1.6E-34 289.6 14.6 195 53-351 350-557 (608)
95 2iw3_A Elongation factor 3A; a 100.0 1.2E-29 4E-34 296.9 14.8 201 46-347 668-981 (986)
96 2ghi_A Transport protein; mult 100.0 2.6E-29 8.7E-34 255.9 12.8 187 322-520 37-243 (260)
97 3gd7_A Fusion complex of cysti 100.0 9.1E-30 3.1E-34 273.0 7.3 191 314-520 33-243 (390)
98 2pze_A Cystic fibrosis transme 100.0 1.7E-28 5.8E-33 245.3 11.1 175 322-519 25-218 (229)
99 2cbz_A Multidrug resistance-as 99.9 2.9E-28 1E-32 244.8 9.8 179 322-520 22-218 (237)
100 3b5x_A Lipid A export ATP-bind 99.9 8.1E-28 2.8E-32 270.9 14.2 188 322-520 360-568 (582)
101 2yl4_A ATP-binding cassette SU 99.9 7.6E-28 2.6E-32 271.8 13.2 190 322-520 361-571 (595)
102 3b60_A Lipid A export ATP-bind 99.9 1.1E-27 3.8E-32 269.8 12.7 188 322-520 360-568 (582)
103 4a82_A Cystic fibrosis transme 99.9 1.9E-27 6.6E-32 267.7 12.4 187 322-520 358-565 (578)
104 3qf4_A ABC transporter, ATP-bi 99.9 1.5E-27 5.1E-32 269.0 11.0 187 322-520 360-567 (587)
105 3qf4_B Uncharacterized ABC tra 99.9 1.8E-27 6.1E-32 269.0 11.3 187 322-520 372-579 (598)
106 3ux8_A Excinuclease ABC, A sub 99.9 9E-27 3.1E-31 266.4 14.1 126 142-349 504-636 (670)
107 2bbs_A Cystic fibrosis transme 99.9 9.8E-27 3.4E-31 240.5 11.6 174 322-519 55-247 (290)
108 2vf7_A UVRA2, excinuclease ABC 99.9 1E-24 3.5E-29 252.9 13.4 108 165-348 708-822 (842)
109 2r6f_A Excinuclease ABC subuni 99.9 1.2E-24 4.2E-29 253.1 13.6 125 142-348 806-937 (972)
110 3pih_A Uvrabc system protein A 99.9 4.4E-24 1.5E-28 249.5 16.6 127 142-350 766-899 (916)
111 2npi_A Protein CLP1; CLP1-PCF1 99.9 1.2E-27 4.2E-32 261.9 -13.7 187 47-348 116-333 (460)
112 2ygr_A Uvrabc system protein A 99.9 9E-24 3.1E-28 246.6 11.9 124 143-348 825-955 (993)
113 4aby_A DNA repair protein RECN 99.9 6E-23 2.1E-27 220.8 12.8 59 279-344 317-379 (415)
114 3qf7_A RAD50; ABC-ATPase, ATPa 99.8 8.1E-21 2.8E-25 202.2 11.0 62 277-344 303-364 (365)
115 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 4.4E-20 1.5E-24 172.4 12.0 83 424-507 51-141 (148)
116 3b85_A Phosphate starvation-in 99.8 3.3E-22 1.1E-26 197.0 -6.5 140 79-342 28-172 (208)
117 1e69_A Chromosome segregation 99.8 3.4E-20 1.2E-24 193.8 7.7 59 277-342 241-301 (322)
118 3qf7_A RAD50; ABC-ATPase, ATPa 99.8 1.2E-19 4.2E-24 193.1 10.7 85 425-510 274-364 (365)
119 1znw_A Guanylate kinase, GMP k 99.8 1.2E-23 4E-28 205.9 -19.4 177 61-338 4-202 (207)
120 2npi_A Protein CLP1; CLP1-PCF1 99.8 4E-21 1.4E-25 210.3 -5.0 176 323-518 130-337 (460)
121 3b9q_A Chloroplast SRP recepto 99.8 1.8E-20 6E-25 194.8 -3.0 185 51-343 76-285 (302)
122 1ye8_A Protein THEP1, hypothet 99.7 2.5E-20 8.5E-25 179.1 -3.4 141 78-333 5-152 (178)
123 3sop_A Neuronal-specific septi 99.7 2E-20 6.8E-25 191.3 -5.1 110 73-199 2-111 (270)
124 1tq4_A IIGP1, interferon-induc 99.7 1.5E-21 5.3E-26 210.6 -14.2 186 65-341 35-255 (413)
125 4aby_A DNA repair protein RECN 99.7 3.8E-17 1.3E-21 175.5 14.1 83 427-511 291-380 (415)
126 4gp7_A Metallophosphoesterase; 99.7 3.8E-19 1.3E-23 169.0 -2.2 47 278-329 102-164 (171)
127 2og2_A Putative signal recogni 99.7 6.8E-19 2.3E-23 186.8 -0.8 184 52-343 134-342 (359)
128 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 2.3E-16 7.9E-21 147.2 10.9 56 277-338 81-136 (148)
129 2dpy_A FLII, flagellum-specifi 99.7 1E-19 3.5E-24 198.1 -14.0 189 48-348 130-339 (438)
130 3qkt_A DNA double-strand break 99.7 1.2E-16 4.1E-21 168.2 9.1 83 421-504 239-327 (339)
131 1z6g_A Guanylate kinase; struc 99.6 2.1E-20 7.3E-25 184.8 -20.2 177 67-336 11-206 (218)
132 3aez_A Pantothenate kinase; tr 99.6 1.7E-18 5.7E-23 180.6 -7.8 96 79-201 96-191 (312)
133 4ad8_A DNA repair protein RECN 99.6 3.9E-16 1.3E-20 173.3 10.6 81 425-507 391-474 (517)
134 1e69_A Chromosome segregation 99.6 8E-16 2.7E-20 160.7 11.7 84 422-507 211-300 (322)
135 2v9p_A Replication protein E1; 99.6 2.5E-19 8.5E-24 186.1 -15.8 156 50-351 102-264 (305)
136 3kta_B Chromosome segregation 99.6 2.1E-15 7.3E-20 144.2 12.1 80 423-504 57-140 (173)
137 2o5v_A DNA replication and rep 99.6 5.1E-16 1.7E-20 164.8 7.2 86 425-517 259-354 (359)
138 2pt7_A CAG-ALFA; ATPase, prote 99.6 5.6E-17 1.9E-21 170.3 -1.9 127 68-342 160-292 (330)
139 2qnr_A Septin-2, protein NEDD5 99.6 5.7E-17 1.9E-21 168.1 -5.4 123 53-198 2-125 (301)
140 3b85_A Phosphate starvation-in 99.5 1.7E-16 5.8E-21 156.1 -3.2 133 329-495 20-163 (208)
141 2obl_A ESCN; ATPase, hydrolase 99.5 1.4E-16 4.8E-21 168.4 -5.2 187 48-348 44-250 (347)
142 1cr0_A DNA primase/helicase; R 99.5 6.3E-16 2.1E-20 158.8 -0.3 179 66-342 22-237 (296)
143 1ye8_A Protein THEP1, hypothet 99.5 6.3E-15 2.2E-19 141.3 6.5 82 422-510 68-159 (178)
144 1tf7_A KAIC; homohexamer, hexa 99.5 3E-15 1E-19 166.4 4.8 143 79-341 287-444 (525)
145 4gp7_A Metallophosphoesterase; 99.5 3.7E-15 1.3E-19 141.4 2.9 78 418-496 72-165 (171)
146 2jeo_A Uridine-cytidine kinase 99.5 1.5E-15 5.3E-20 152.1 0.3 109 64-196 10-126 (245)
147 3auy_A DNA double-strand break 99.5 6.6E-14 2.3E-18 149.0 12.8 78 426-505 276-360 (371)
148 2o8b_B DNA mismatch repair pro 99.5 6.5E-16 2.2E-20 183.3 -3.4 177 33-343 733-930 (1022)
149 2ehv_A Hypothetical protein PH 99.5 8.4E-16 2.9E-20 152.4 -4.2 58 277-339 135-207 (251)
150 3kta_B Chromosome segregation 99.5 1.3E-13 4.4E-18 131.8 10.4 55 277-338 86-140 (173)
151 1w1w_A Structural maintenance 99.5 1.4E-13 4.8E-18 149.1 11.5 82 423-505 326-411 (430)
152 3qkt_A DNA double-strand break 99.5 6.6E-14 2.2E-18 147.2 8.3 56 277-338 272-327 (339)
153 3szr_A Interferon-induced GTP- 99.5 6.2E-15 2.1E-19 166.8 0.1 158 79-347 51-231 (608)
154 1znw_A Guanylate kinase, GMP k 99.4 3.3E-17 1.1E-21 160.0 -17.0 124 371-505 63-203 (207)
155 1tq4_A IIGP1, interferon-induc 99.4 7.5E-16 2.6E-20 166.2 -8.7 120 375-506 111-254 (413)
156 3asz_A Uridine kinase; cytidin 99.4 1.7E-15 5.9E-20 147.3 -8.4 138 79-325 12-162 (211)
157 3thx_A DNA mismatch repair pro 99.4 2E-14 6.7E-19 168.9 -1.4 65 277-346 741-806 (934)
158 2qag_C Septin-7; cell cycle, c 99.4 6.9E-14 2.4E-18 151.2 1.4 125 50-204 12-136 (418)
159 1rj9_A FTSY, signal recognitio 99.4 6.6E-15 2.3E-19 152.9 -6.4 101 79-199 108-215 (304)
160 4ad8_A DNA repair protein RECN 99.4 4.7E-13 1.6E-17 148.5 7.9 56 279-341 419-474 (517)
161 4a74_A DNA repair and recombin 99.4 1.6E-14 5.6E-19 141.3 -4.5 61 277-341 125-201 (231)
162 1ewq_A DNA mismatch repair pro 99.3 1.4E-13 4.7E-18 159.0 -0.6 131 65-331 565-704 (765)
163 2eyu_A Twitching motility prot 99.3 1.4E-13 4.8E-18 139.9 -1.2 133 278-497 99-241 (261)
164 3thx_B DNA mismatch repair pro 99.3 7.6E-13 2.6E-17 155.1 2.5 52 277-333 752-804 (918)
165 2i3b_A HCR-ntpase, human cance 99.3 1.3E-14 4.3E-19 140.7 -10.7 48 79-137 7-54 (189)
166 2o5v_A DNA replication and rep 99.3 3.5E-12 1.2E-16 135.3 6.1 61 277-349 292-352 (359)
167 3auy_A DNA double-strand break 99.2 4.2E-11 1.4E-15 127.3 13.5 55 278-339 306-360 (371)
168 3b9q_A Chloroplast SRP recepto 99.2 3.7E-13 1.2E-17 139.6 -2.5 163 324-508 93-284 (302)
169 2o8b_B DNA mismatch repair pro 99.2 4.5E-12 1.5E-16 150.5 4.4 119 372-516 816-939 (1022)
170 1pzn_A RAD51, DNA repair and r 99.2 2.6E-13 8.8E-18 143.5 -5.9 66 278-347 232-309 (349)
171 3sop_A Neuronal-specific septi 99.2 3.3E-13 1.1E-17 137.8 -6.3 117 361-492 36-152 (270)
172 1wb9_A DNA mismatch repair pro 99.2 1.4E-12 4.8E-17 151.4 -2.2 62 277-343 686-748 (800)
173 1w1w_A Structural maintenance 99.2 5.4E-11 1.9E-15 128.8 10.2 57 277-339 355-411 (430)
174 2w0m_A SSO2452; RECA, SSPF, un 99.2 9.1E-13 3.1E-17 128.6 -4.0 60 277-340 121-192 (235)
175 2og2_A Putative signal recogni 99.1 3.6E-12 1.2E-16 135.2 -0.7 163 324-508 150-341 (359)
176 2rcn_A Probable GTPase ENGC; Y 99.1 2E-12 6.7E-17 137.0 -2.8 123 68-207 205-334 (358)
177 1pui_A ENGB, probable GTP-bind 99.1 6.1E-13 2.1E-17 128.3 -6.9 28 279-306 170-197 (210)
178 3thx_A DNA mismatch repair pro 99.1 4.7E-11 1.6E-15 140.4 6.0 100 414-517 708-811 (934)
179 1nij_A Hypothetical protein YJ 99.1 8.1E-14 2.8E-18 145.4 -15.9 109 79-196 10-151 (318)
180 2v9p_A Replication protein E1; 99.1 1.5E-13 5.1E-18 142.6 -13.8 151 322-521 117-268 (305)
181 2bdt_A BH3686; alpha-beta prot 99.1 3.3E-14 1.1E-18 136.0 -17.6 171 78-349 7-180 (189)
182 1s96_A Guanylate kinase, GMP k 99.1 1.2E-12 4.3E-17 129.5 -7.0 56 79-145 22-79 (219)
183 2bbw_A Adenylate kinase 4, AK4 99.1 6.5E-13 2.2E-17 132.8 -9.5 65 78-153 32-99 (246)
184 1nlf_A Regulatory protein REPA 99.1 6.2E-11 2.1E-15 120.7 4.7 146 79-329 36-186 (279)
185 1cr0_A DNA primase/helicase; R 99.1 3.3E-10 1.1E-14 116.1 9.6 98 408-508 109-237 (296)
186 2yv5_A YJEQ protein; hydrolase 99.0 4.8E-12 1.6E-16 131.1 -4.7 110 79-198 171-299 (302)
187 3jvv_A Twitching mobility prot 99.0 2.1E-11 7.2E-16 129.2 -1.3 50 278-340 197-246 (356)
188 1lw7_A Transcriptional regulat 99.0 6.1E-14 2.1E-18 148.8 -20.8 58 277-339 277-343 (365)
189 2dpy_A FLII, flagellum-specifi 99.0 6E-13 2E-17 144.8 -15.1 124 370-519 211-344 (438)
190 2jeo_A Uridine-cytidine kinase 99.0 5.5E-11 1.9E-15 118.9 -0.3 170 322-521 16-189 (245)
191 3thx_B DNA mismatch repair pro 98.9 7.5E-10 2.6E-14 129.9 6.7 96 413-510 718-816 (918)
192 3aez_A Pantothenate kinase; tr 98.9 1.1E-11 3.7E-16 129.1 -8.2 125 372-507 121-246 (312)
193 2gza_A Type IV secretion syste 98.9 3.7E-10 1.3E-14 119.7 1.5 61 69-138 165-232 (361)
194 2qm8_A GTPase/ATPase; G protei 98.9 1.7E-12 5.7E-17 136.6 -16.6 82 49-142 29-121 (337)
195 1u0l_A Probable GTPase ENGC; p 98.8 4.6E-11 1.6E-15 123.5 -6.0 99 79-189 175-294 (301)
196 3e70_C DPA, signal recognition 98.8 5E-11 1.7E-15 125.0 -6.1 67 79-153 135-208 (328)
197 1z6g_A Guanylate kinase; struc 98.8 6.8E-13 2.3E-17 130.8 -19.3 168 322-501 14-205 (218)
198 1htw_A HI0065; nucleotide-bind 98.8 2.3E-11 7.7E-16 114.5 -8.0 82 52-151 10-97 (158)
199 2oap_1 GSPE-2, type II secreti 98.8 6.3E-11 2.2E-15 131.2 -5.9 46 65-118 246-297 (511)
200 1n0w_A DNA repair protein RAD5 98.8 3.1E-10 1.1E-14 111.7 -0.4 61 277-341 119-210 (243)
201 2ehv_A Hypothetical protein PH 98.8 1.8E-09 6E-14 106.7 5.1 60 446-505 133-207 (251)
202 2w0m_A SSO2452; RECA, SSPF, un 98.8 3.4E-09 1.2E-13 103.0 7.0 78 430-507 103-193 (235)
203 2f1r_A Molybdopterin-guanine d 98.8 4.4E-11 1.5E-15 114.0 -6.4 103 79-206 8-123 (171)
204 2yhs_A FTSY, cell division pro 98.8 2E-10 6.7E-15 125.9 -2.2 78 69-154 283-373 (503)
205 1ewq_A DNA mismatch repair pro 98.8 5.4E-10 1.8E-14 129.1 0.9 76 431-512 636-717 (765)
206 1sxj_E Activator 1 40 kDa subu 98.8 3E-09 1E-13 111.0 4.9 41 278-325 135-175 (354)
207 1t9h_A YLOQ, probable GTPase E 98.8 8.2E-11 2.8E-15 122.2 -7.2 173 9-194 99-303 (307)
208 2pt7_A CAG-ALFA; ATPase, prote 98.8 6.2E-10 2.1E-14 116.7 -0.8 91 433-531 225-316 (330)
209 1nlf_A Regulatory protein REPA 98.8 7.1E-09 2.4E-13 105.3 7.1 82 410-494 98-185 (279)
210 2qag_B Septin-6, protein NEDD5 98.8 2.8E-10 9.6E-15 122.9 -3.7 181 52-323 19-218 (427)
211 1p9r_A General secretion pathw 98.7 6.1E-11 2.1E-15 128.2 -10.9 115 79-206 173-311 (418)
212 2obl_A ESCN; ATPase, hydrolase 98.7 3.1E-10 1.1E-14 119.8 -5.9 81 426-518 167-254 (347)
213 1zp6_A Hypothetical protein AT 98.7 1.1E-11 3.6E-16 118.2 -15.9 107 78-199 14-122 (191)
214 2cvh_A DNA repair and recombin 98.7 8.3E-09 2.8E-13 99.9 4.1 59 278-340 106-185 (220)
215 3asz_A Uridine kinase; cytidin 98.6 3.4E-11 1.2E-15 116.8 -13.8 116 373-491 33-162 (211)
216 1wb9_A DNA mismatch repair pro 98.6 1.3E-08 4.5E-13 118.1 4.4 93 419-513 658-752 (800)
217 1odf_A YGR205W, hypothetical 3 98.6 2.2E-09 7.6E-14 110.5 -2.1 98 76-197 34-145 (290)
218 2cvh_A DNA repair and recombin 98.6 7.7E-08 2.6E-12 93.0 8.2 79 428-506 82-185 (220)
219 2ewv_A Twitching motility prot 98.6 4.4E-09 1.5E-13 112.0 -0.9 58 431-490 284-351 (372)
220 1in4_A RUVB, holliday junction 98.6 7.2E-10 2.5E-14 116.0 -7.7 107 79-196 57-172 (334)
221 4a74_A DNA repair and recombin 98.5 6.3E-08 2.2E-12 94.2 5.6 61 447-507 124-201 (231)
222 3lda_A DNA repair protein RAD5 98.5 2.4E-08 8.1E-13 107.3 2.0 61 277-341 273-364 (400)
223 3ec2_A DNA replication protein 98.4 5.9E-08 2E-12 91.6 2.0 44 278-326 101-145 (180)
224 2x8a_A Nuclear valosin-contain 98.4 3.8E-10 1.3E-14 115.1 -14.7 119 68-208 35-159 (274)
225 1rj9_A FTSY, signal recognitio 98.4 3.5E-08 1.2E-12 102.2 -1.1 141 331-491 102-259 (304)
226 2bdt_A BH3686; alpha-beta prot 98.4 5.5E-11 1.9E-15 113.5 -20.9 134 373-519 42-184 (189)
227 3szr_A Interferon-induced GTP- 98.3 1.1E-08 3.8E-13 115.6 -6.3 122 369-517 94-235 (608)
228 1ni3_A YCHF GTPase, YCHF GTP-b 98.3 2.3E-09 8E-14 114.8 -12.2 62 279-346 143-206 (392)
229 2kjq_A DNAA-related protein; s 98.3 4.3E-07 1.5E-11 84.0 4.6 40 278-323 84-124 (149)
230 2qnr_A Septin-2, protein NEDD5 98.2 6E-09 2.1E-13 107.7 -10.2 105 371-491 62-168 (301)
231 1udx_A The GTP-binding protein 98.2 1.6E-07 5.4E-12 101.4 0.4 107 69-198 147-264 (416)
232 2ius_A DNA translocase FTSK; n 98.2 1.7E-07 5.7E-12 103.5 -0.2 176 79-337 173-362 (512)
233 1pzn_A RAD51, DNA repair and r 98.2 5.7E-07 1.9E-11 94.8 3.4 80 432-511 208-307 (349)
234 1s96_A Guanylate kinase, GMP k 98.2 9.8E-08 3.3E-12 94.2 -2.5 98 371-521 61-162 (219)
235 2eyu_A Twitching motility prot 98.1 6.2E-07 2.1E-11 90.8 2.3 60 438-505 88-147 (261)
236 1sq5_A Pantothenate kinase; P- 98.1 6.9E-08 2.4E-12 99.9 -5.1 89 50-156 38-156 (308)
237 1iy2_A ATP-dependent metallopr 98.1 3.4E-09 1.2E-13 107.5 -14.9 133 48-207 48-190 (278)
238 2dr3_A UPF0273 protein PH0284; 98.1 3.2E-07 1.1E-11 90.0 -1.1 59 277-339 128-196 (247)
239 1ixz_A ATP-dependent metallopr 98.1 8.6E-09 2.9E-13 102.9 -12.8 133 48-207 24-166 (254)
240 2i3b_A HCR-ntpase, human cance 98.0 1.2E-07 4.1E-12 91.5 -5.4 78 425-510 78-167 (189)
241 1n0w_A DNA repair protein RAD5 98.0 1.2E-05 4.2E-10 78.6 8.8 60 447-506 118-209 (243)
242 1pui_A ENGB, probable GTP-bind 98.0 3.9E-06 1.3E-10 80.3 4.3 70 413-482 131-202 (210)
243 3jvv_A Twitching mobility prot 98.0 1.6E-06 5.4E-11 91.7 1.6 59 440-506 188-246 (356)
244 1ls1_A Signal recognition part 97.9 2.7E-05 9.1E-10 80.1 8.7 57 50-121 77-138 (295)
245 3lnc_A Guanylate kinase, GMP k 97.8 6.8E-08 2.3E-12 95.1 -10.9 58 277-334 148-205 (231)
246 3ec2_A DNA replication protein 97.8 8.9E-06 3.1E-10 76.5 4.2 47 447-493 99-146 (180)
247 1lvg_A Guanylate kinase, GMP k 97.8 1.4E-08 4.7E-13 98.3 -16.2 50 277-339 124-173 (198)
248 3c8u_A Fructokinase; YP_612366 97.7 3.3E-07 1.1E-11 88.8 -8.3 33 79-119 28-63 (208)
249 2px0_A Flagellar biosynthesis 97.7 2.1E-05 7E-10 81.0 4.2 63 278-344 183-246 (296)
250 3euj_A Chromosome partition pr 97.7 2.9E-06 9.9E-11 93.0 -2.3 74 425-504 374-464 (483)
251 2bbw_A Adenylate kinase 4, AK4 97.7 2.6E-07 8.8E-12 91.9 -10.1 100 372-480 74-200 (246)
252 3k1j_A LON protease, ATP-depen 97.6 1.1E-06 3.6E-11 99.3 -7.4 62 64-137 45-113 (604)
253 3tr0_A Guanylate kinase, GMP k 97.6 2.6E-07 8.8E-12 88.5 -10.8 63 79-153 13-76 (205)
254 2qag_C Septin-7; cell cycle, c 97.6 3.6E-06 1.2E-10 90.9 -3.7 101 371-491 74-178 (418)
255 2rcn_A Probable GTPase ENGC; Y 97.5 6.2E-05 2.1E-09 79.5 5.1 70 370-445 259-328 (358)
256 1lw7_A Transcriptional regulat 97.5 6.7E-07 2.3E-11 94.5 -10.2 91 425-518 253-354 (365)
257 1qhl_A Protein (cell division 97.5 6.3E-06 2.2E-10 81.8 -2.6 50 79-136 33-91 (227)
258 1vma_A Cell division protein F 97.4 4.4E-05 1.5E-09 79.0 2.7 33 79-119 110-142 (306)
259 1nij_A Hypothetical protein YJ 97.4 1.3E-07 4.5E-12 98.2 -16.6 115 371-498 74-197 (318)
260 2kjq_A DNAA-related protein; s 97.2 8.2E-05 2.8E-09 68.6 1.9 44 445-489 80-124 (149)
261 1odf_A YGR205W, hypothetical 3 97.2 9.6E-06 3.3E-10 83.3 -5.0 90 374-464 65-168 (290)
262 3lda_A DNA repair protein RAD5 97.2 0.0006 2.1E-08 73.0 8.3 61 447-507 272-364 (400)
263 2r6a_A DNAB helicase, replicat 97.1 0.0013 4.3E-08 71.5 9.9 98 409-508 274-401 (454)
264 2zr9_A Protein RECA, recombina 97.1 0.00042 1.4E-08 72.9 5.7 65 278-343 140-233 (349)
265 1oix_A RAS-related protein RAB 97.1 3.5E-05 1.2E-09 73.1 -2.4 25 278-304 164-188 (191)
266 1zp6_A Hypothetical protein AT 97.1 1.9E-06 6.4E-11 81.6 -11.6 104 372-487 53-158 (191)
267 2qag_B Septin-6, protein NEDD5 97.0 5.3E-05 1.8E-09 81.8 -2.4 162 322-490 31-219 (427)
268 1ni3_A YCHF GTPase, YCHF GTP-b 97.0 6.6E-07 2.3E-11 95.8 -17.5 114 376-514 88-208 (392)
269 2r6a_A DNAB helicase, replicat 96.9 0.00037 1.3E-08 75.6 3.7 62 277-342 313-401 (454)
270 1sxj_E Activator 1 40 kDa subu 96.9 0.00083 2.8E-08 69.5 6.1 46 445-492 131-176 (354)
271 4eun_A Thermoresistant glucoki 96.9 2.1E-05 7.1E-10 75.5 -5.7 61 79-151 35-95 (200)
272 2qtf_A Protein HFLX, GTP-bindi 96.9 4.5E-05 1.5E-09 80.8 -4.0 108 76-196 182-314 (364)
273 2ewv_A Twitching motility prot 96.9 0.00028 9.6E-09 74.8 1.8 59 438-504 199-257 (372)
274 2dr3_A UPF0273 protein PH0284; 96.7 0.0025 8.7E-08 61.9 7.3 59 447-505 127-196 (247)
275 2dhr_A FTSH; AAA+ protein, hex 96.7 3.7E-05 1.3E-09 84.7 -7.0 134 47-207 38-181 (499)
276 2f9l_A RAB11B, member RAS onco 96.6 3.4E-05 1.2E-09 73.4 -6.8 26 278-305 140-165 (199)
277 1udx_A The GTP-binding protein 96.4 0.00048 1.6E-08 74.2 -0.5 82 412-500 237-319 (416)
278 2zr9_A Protein RECA, recombina 96.3 0.0082 2.8E-07 63.0 8.6 75 439-513 128-237 (349)
279 3e70_C DPA, signal recognition 96.3 0.0011 3.8E-08 69.1 1.7 135 330-490 128-279 (328)
280 1zu4_A FTSY; GTPase, signal re 96.2 0.00093 3.2E-08 69.4 0.5 72 70-149 96-184 (320)
281 2yv5_A YJEQ protein; hydrolase 96.1 0.00036 1.2E-08 71.8 -3.1 70 373-443 216-300 (302)
282 1jjv_A Dephospho-COA kinase; P 96.1 0.0078 2.7E-07 57.3 6.2 43 290-339 88-132 (206)
283 2xau_A PRE-mRNA-splicing facto 96.0 0.0026 8.8E-08 73.7 2.9 77 425-501 185-263 (773)
284 2e87_A Hypothetical protein PH 95.9 0.016 5.3E-07 60.7 8.1 41 279-325 250-293 (357)
285 3t34_A Dynamin-related protein 95.8 6.9E-05 2.3E-09 78.8 -10.3 60 49-117 8-72 (360)
286 2ius_A DNA translocase FTSK; n 95.8 0.00035 1.2E-08 77.0 -5.0 97 405-503 241-362 (512)
287 2oap_1 GSPE-2, type II secreti 95.8 2.2E-05 7.4E-10 86.9 -15.0 110 377-498 330-458 (511)
288 2xau_A PRE-mRNA-splicing facto 95.6 0.0098 3.4E-07 68.9 5.9 51 278-333 209-261 (773)
289 4e22_A Cytidylate kinase; P-lo 95.6 0.00091 3.1E-08 66.7 -2.6 54 76-137 30-96 (252)
290 2px0_A Flagellar biosynthesis 95.5 0.0049 1.7E-07 63.2 2.6 69 438-510 174-246 (296)
291 2qm8_A GTPase/ATPase; G protei 95.5 0.00032 1.1E-08 73.3 -6.5 52 423-478 202-260 (337)
292 1in4_A RUVB, holliday junction 95.5 0.00066 2.2E-08 70.5 -4.3 104 372-499 103-211 (334)
293 3a00_A Guanylate kinase, GMP k 95.2 0.0021 7.3E-08 60.6 -1.5 29 78-114 6-34 (186)
294 2yhs_A FTSY, cell division pro 95.1 0.0025 8.6E-08 69.9 -1.3 148 322-492 284-450 (503)
295 1svm_A Large T antigen; AAA+ f 95.0 0.00048 1.6E-08 73.2 -7.3 122 66-207 156-303 (377)
296 3nwj_A ATSK2; P loop, shikimat 94.9 0.0016 5.3E-08 65.3 -3.4 47 48-105 16-72 (250)
297 3kta_A Chromosome segregation 94.8 0.0028 9.6E-08 59.1 -1.7 113 70-195 18-151 (182)
298 3uie_A Adenylyl-sulfate kinase 94.8 0.00072 2.5E-08 64.6 -5.9 33 79-120 31-65 (200)
299 2j41_A Guanylate kinase; GMP, 94.7 0.0032 1.1E-07 59.6 -1.5 49 79-138 12-61 (207)
300 1fnn_A CDC6P, cell division co 94.7 0.018 6E-07 59.8 3.9 50 278-330 126-175 (389)
301 1knq_A Gluconate kinase; ALFA/ 94.7 0.00074 2.5E-08 62.7 -6.1 47 78-136 13-59 (175)
302 2dy1_A Elongation factor G; tr 94.5 0.0074 2.5E-07 68.7 0.6 40 278-327 100-139 (665)
303 2ce7_A Cell division protein F 94.4 0.011 3.6E-07 64.7 1.4 49 278-327 109-167 (476)
304 1sxj_C Activator 1 40 kDa subu 94.3 0.0001 3.5E-09 76.6 -14.2 40 157-196 168-209 (340)
305 3euj_A Chromosome partition pr 94.0 0.062 2.1E-06 58.8 6.5 46 67-120 18-68 (483)
306 3cr8_A Sulfate adenylyltranfer 94.0 0.00048 1.6E-08 76.8 -10.4 83 77-175 373-468 (552)
307 3hr8_A Protein RECA; alpha and 94.0 0.048 1.7E-06 57.3 5.4 59 79-147 67-126 (356)
308 3vaa_A Shikimate kinase, SK; s 93.9 0.0093 3.2E-07 56.7 -0.4 27 63-91 9-41 (199)
309 2e87_A Hypothetical protein PH 93.6 0.073 2.5E-06 55.5 6.0 72 421-494 222-296 (357)
310 2f1r_A Molybdopterin-guanine d 93.5 0.0022 7.6E-08 60.5 -5.4 52 430-481 103-164 (171)
311 2ce7_A Cell division protein F 93.3 0.087 3E-06 57.5 6.2 62 433-494 93-168 (476)
312 4a1f_A DNAB helicase, replicat 93.3 0.068 2.3E-06 55.8 5.1 35 279-322 129-164 (338)
313 3tqc_A Pantothenate kinase; bi 92.1 0.0047 1.6E-07 64.2 -5.8 32 77-116 96-129 (321)
314 1vma_A Cell division protein F 92.0 0.13 4.6E-06 52.7 5.0 57 412-476 152-211 (306)
315 1kgd_A CASK, peripheral plasma 91.3 0.024 8.1E-07 53.1 -1.4 30 79-116 11-41 (180)
316 3m6a_A ATP-dependent protease 91.1 0.0083 2.9E-07 66.6 -5.5 62 68-137 98-165 (543)
317 1rz3_A Hypothetical protein rb 91.1 0.019 6.6E-07 54.7 -2.3 35 77-119 26-60 (201)
318 1ls1_A Signal recognition part 90.9 0.29 9.8E-06 49.8 6.1 42 435-476 167-209 (295)
319 1cke_A CK, MSSA, protein (cyti 90.8 0.0098 3.3E-07 57.2 -4.7 54 76-137 8-74 (227)
320 4a1f_A DNAB helicase, replicat 90.1 0.23 8E-06 51.7 4.8 54 429-487 108-163 (338)
321 3kl4_A SRP54, signal recogniti 90.0 0.51 1.8E-05 50.8 7.4 33 79-119 103-135 (433)
322 2gza_A Type IV secretion syste 89.8 0.055 1.9E-06 56.8 -0.3 91 432-530 236-327 (361)
323 2qby_A CDC6 homolog 1, cell di 89.7 0.029 1E-06 57.7 -2.5 51 278-330 129-179 (386)
324 1mky_A Probable GTP-binding pr 89.3 0.12 4E-06 55.6 1.8 70 74-151 181-263 (439)
325 2vp4_A Deoxynucleoside kinase; 89.2 0.07 2.4E-06 51.9 -0.1 32 76-119 23-54 (230)
326 2z4s_A Chromosomal replication 89.1 0.068 2.3E-06 57.6 -0.3 44 447-490 193-237 (440)
327 2qag_A Septin-2, protein NEDD5 88.4 0.069 2.4E-06 56.0 -0.8 57 47-116 16-72 (361)
328 3bh0_A DNAB-like replicative h 87.6 0.37 1.2E-05 49.3 4.1 11 186-196 133-143 (315)
329 1p9r_A General secretion pathw 87.4 0.012 4.1E-07 63.3 -7.6 72 377-453 233-314 (418)
330 1fnn_A CDC6P, cell division co 86.8 1.2 4.1E-05 45.7 7.5 51 446-497 123-176 (389)
331 2z43_A DNA repair and recombin 86.8 0.12 3.9E-06 53.3 -0.3 48 277-325 203-259 (324)
332 3ney_A 55 kDa erythrocyte memb 86.7 0.08 2.7E-06 51.0 -1.4 20 79-106 25-44 (197)
333 3tau_A Guanylate kinase, GMP k 86.7 0.13 4.5E-06 49.1 0.1 29 78-114 13-42 (208)
334 2ffh_A Protein (FFH); SRP54, s 86.5 0.13 4.5E-06 55.3 -0.0 57 51-122 78-139 (425)
335 1ypw_A Transitional endoplasmi 86.3 0.0058 2E-07 71.1 -11.6 78 79-166 244-323 (806)
336 1jjv_A Dephospho-COA kinase; P 86.2 0.14 4.8E-06 48.4 -0.0 94 411-522 47-142 (206)
337 2p67_A LAO/AO transport system 85.9 0.026 8.8E-07 58.7 -5.8 45 68-120 45-95 (341)
338 1j8m_F SRP54, signal recogniti 85.2 0.1 3.6E-06 53.2 -1.6 58 50-121 75-138 (297)
339 1v5w_A DMC1, meiotic recombina 82.9 0.26 8.9E-06 51.1 0.3 49 277-326 219-276 (343)
340 1jcn_A Inosine monophosphate d 82.4 0.013 4.3E-07 64.7 -10.5 71 443-519 28-102 (514)
341 2qt1_A Nicotinamide riboside k 82.1 0.39 1.3E-05 45.3 1.2 23 76-106 24-46 (207)
342 1g5t_A COB(I)alamin adenosyltr 81.9 1 3.5E-05 43.2 4.0 69 436-505 106-179 (196)
343 3bh0_A DNAB-like replicative h 81.0 1.5 5.1E-05 44.7 5.2 54 430-488 133-189 (315)
344 2r8r_A Sensor protein; KDPD, P 80.5 0.29 1E-05 48.1 -0.4 75 443-524 79-176 (228)
345 2www_A Methylmalonic aciduria 80.5 0.18 6.3E-06 52.5 -2.0 41 446-494 250-290 (349)
346 1oix_A RAS-related protein RAB 78.7 0.89 3E-05 42.2 2.3 35 440-476 155-189 (191)
347 1u94_A RECA protein, recombina 75.3 11 0.00037 39.2 9.7 73 440-512 131-238 (356)
348 1u94_A RECA protein, recombina 75.1 3 0.0001 43.5 5.4 47 278-325 142-201 (356)
349 1lvg_A Guanylate kinase, GMP k 75.0 0.024 8.1E-07 54.1 -9.9 53 444-504 120-172 (198)
350 2z43_A DNA repair and recombin 74.5 2.6 8.8E-05 43.0 4.7 57 437-493 189-261 (324)
351 3ihw_A Centg3; RAS, centaurin, 74.0 2.3 7.9E-05 39.1 3.8 32 72-110 19-54 (184)
352 1m2o_B GTP-binding protein SAR 73.9 1.6 5.5E-05 40.3 2.7 30 68-104 13-47 (190)
353 2wjg_A FEOB, ferrous iron tran 73.1 1.2 4.2E-05 40.5 1.6 24 73-104 7-30 (188)
354 3t61_A Gluconokinase; PSI-biol 72.5 0.11 3.6E-06 49.2 -6.0 33 76-120 21-53 (202)
355 1kag_A SKI, shikimate kinase I 72.4 0.79 2.7E-05 41.5 0.2 27 78-116 9-35 (173)
356 2pez_A Bifunctional 3'-phospho 71.7 0.46 1.6E-05 43.7 -1.7 34 77-119 9-44 (179)
357 4eaq_A DTMP kinase, thymidylat 70.9 0.74 2.5E-05 44.8 -0.4 29 78-115 31-59 (229)
358 1m7g_A Adenylylsulfate kinase; 70.7 0.45 1.6E-05 45.2 -2.0 36 76-119 28-65 (211)
359 1f6b_A SAR1; gtpases, N-termin 70.3 1.2 4.1E-05 41.6 0.9 29 68-103 15-48 (198)
360 1v5w_A DMC1, meiotic recombina 69.7 5.6 0.00019 41.0 5.9 56 437-492 204-276 (343)
361 2qtf_A Protein HFLX, GTP-bindi 69.4 3.3 0.00011 43.3 4.1 65 410-478 280-353 (364)
362 3b9p_A CG5977-PA, isoform A; A 69.2 6.7 0.00023 38.7 6.3 72 432-503 97-186 (297)
363 2x8a_A Nuclear valosin-contain 68.9 0.056 1.9E-06 54.4 -9.3 88 372-473 90-190 (274)
364 1qhx_A CPT, protein (chloramph 68.3 0.91 3.1E-05 41.4 -0.4 13 77-91 7-19 (178)
365 1b9m_A Protein (mode); DNA-bin 68.0 2.3 7.8E-05 41.8 2.4 67 139-206 27-93 (265)
366 2q6t_A DNAB replication FORK h 67.3 17 0.00059 38.5 9.4 75 429-505 291-397 (444)
367 1t9h_A YLOQ, probable GTPase E 67.0 0.37 1.3E-05 49.5 -3.8 64 374-438 225-303 (307)
368 1y63_A LMAJ004144AAA protein; 66.8 0.98 3.4E-05 41.9 -0.5 12 78-91 15-26 (184)
369 1u0l_A Probable GTPase ENGC; p 66.5 0.26 9.1E-06 50.1 -4.9 58 372-433 220-294 (301)
370 2wji_A Ferrous iron transport 65.8 3.1 0.00011 37.2 2.7 16 313-328 107-122 (165)
371 2f9l_A RAB11B, member RAS onco 65.8 2.7 9.3E-05 38.9 2.3 33 442-476 133-165 (199)
372 1b9m_A Protein (mode); DNA-bin 65.7 2.6 8.8E-05 41.4 2.3 54 396-450 40-93 (265)
373 3hr8_A Protein RECA; alpha and 65.6 79 0.0027 32.7 13.7 71 437-507 126-231 (356)
374 2zej_A Dardarin, leucine-rich 64.5 1.8 6.2E-05 39.6 0.8 26 74-107 3-28 (184)
375 2b8t_A Thymidine kinase; deoxy 62.3 11 0.00037 36.5 6.0 53 447-504 88-150 (223)
376 3c8u_A Fructokinase; YP_612366 61.4 0.059 2E-06 51.5 -10.4 73 429-522 110-184 (208)
377 1np6_A Molybdopterin-guanine d 61.2 1.2 4.2E-05 41.6 -1.0 33 78-118 11-46 (174)
378 3trf_A Shikimate kinase, SK; a 60.5 1.6 5.4E-05 40.1 -0.4 14 77-92 9-22 (185)
379 2gj8_A MNME, tRNA modification 60.4 3.4 0.00012 37.4 1.9 23 75-105 6-28 (172)
380 2qby_A CDC6 homolog 1, cell di 60.3 1.3 4.5E-05 45.1 -1.1 49 448-496 128-179 (386)
381 2ohf_A Protein OLA1, GTP-bindi 60.0 2.6 9E-05 44.7 1.2 35 74-116 23-68 (396)
382 2z4s_A Chromosomal replication 58.8 7.8 0.00027 41.3 4.7 43 277-324 194-237 (440)
383 1f2t_A RAD50 ABC-ATPase; DNA d 57.4 2.8 9.6E-05 37.8 0.7 11 79-91 29-39 (149)
384 1via_A Shikimate kinase; struc 57.4 1.9 6.5E-05 39.3 -0.5 12 78-91 9-20 (175)
385 1l8q_A Chromosomal replication 56.6 11 0.00036 37.9 5.0 43 447-489 97-140 (324)
386 3lxx_A GTPase IMAP family memb 54.6 4.2 0.00014 39.0 1.5 42 278-322 113-154 (239)
387 1g5t_A COB(I)alamin adenosyltr 54.1 9.9 0.00034 36.3 4.0 58 277-340 120-180 (196)
388 3k1j_A LON protease, ATP-depen 54.1 3.1 0.00011 46.3 0.5 49 426-475 179-227 (604)
389 2jaq_A Deoxyguanosine kinase; 53.7 2.4 8.1E-05 39.2 -0.5 13 77-91 4-16 (205)
390 2orv_A Thymidine kinase; TP4A 52.5 20 0.00068 35.1 6.0 52 447-504 89-150 (234)
391 2ze6_A Isopentenyl transferase 51.5 2.7 9.3E-05 41.3 -0.4 11 79-91 7-17 (253)
392 1ega_A Protein (GTP-binding pr 49.0 7.4 0.00025 39.2 2.4 64 431-501 101-170 (301)
393 1xp8_A RECA protein, recombina 48.9 52 0.0018 34.1 8.9 69 439-507 141-244 (366)
394 3qks_A DNA double-strand break 47.8 4.9 0.00017 38.0 0.7 11 79-91 29-39 (203)
395 1ex7_A Guanylate kinase; subst 47.6 6 0.00021 37.3 1.3 18 78-102 6-23 (186)
396 2w58_A DNAI, primosome compone 47.3 6.7 0.00023 36.3 1.6 49 447-495 114-165 (202)
397 2yvu_A Probable adenylyl-sulfa 46.5 3.1 0.00011 38.2 -0.9 33 76-116 16-49 (186)
398 1jcn_A Inosine monophosphate d 46.4 0.15 5.2E-06 56.0 -11.6 56 279-343 34-91 (514)
399 3kb2_A SPBC2 prophage-derived 46.3 6.6 0.00023 34.9 1.4 12 78-91 6-17 (173)
400 1sq5_A Pantothenate kinase; P- 46.2 2.6 8.8E-05 42.7 -1.6 72 371-463 128-199 (308)
401 1lv7_A FTSH; alpha/beta domain 45.8 4 0.00014 39.6 -0.2 21 78-106 50-70 (257)
402 1xx6_A Thymidine kinase; NESG, 45.6 28 0.00097 32.6 5.7 52 448-504 81-142 (191)
403 2qor_A Guanylate kinase; phosp 45.5 6.8 0.00023 36.6 1.3 12 78-91 17-28 (204)
404 4ag6_A VIRB4 ATPase, type IV s 45.4 18 0.00063 37.4 4.8 59 448-506 262-335 (392)
405 1htw_A HI0065; nucleotide-bind 43.8 3.5 0.00012 37.7 -1.0 69 322-396 24-98 (158)
406 1uf9_A TT1252 protein; P-loop, 43.8 3.9 0.00013 37.7 -0.7 28 76-116 11-38 (203)
407 3bos_A Putative DNA replicatio 43.7 12 0.00043 34.8 2.9 43 447-489 103-147 (242)
408 2if2_A Dephospho-COA kinase; a 43.5 5.2 0.00018 37.1 0.2 19 77-103 5-23 (204)
409 3ice_A Transcription terminati 42.9 4.3 0.00015 43.2 -0.6 45 50-105 134-198 (422)
410 3cbq_A GTP-binding protein REM 42.8 9.6 0.00033 35.2 1.9 20 70-91 20-39 (195)
411 2vli_A Antibiotic resistance p 42.6 4.8 0.00017 36.5 -0.2 13 77-91 9-21 (183)
412 3lw7_A Adenylate kinase relate 42.4 8.4 0.00029 34.0 1.4 12 78-91 6-17 (179)
413 3kl4_A SRP54, signal recogniti 42.3 21 0.00071 38.2 4.6 52 440-491 171-225 (433)
414 2ew1_A RAS-related protein RAB 41.7 17 0.00057 33.8 3.4 29 72-107 25-53 (201)
415 1sxj_D Activator 1 41 kDa subu 41.0 9.2 0.00032 38.4 1.6 42 448-491 133-174 (353)
416 3bgw_A DNAB-like replicative h 40.6 50 0.0017 35.1 7.4 59 447-505 307-394 (444)
417 1fzq_A ADP-ribosylation factor 40.6 11 0.00038 34.1 1.9 24 73-103 16-39 (181)
418 2p5t_B PEZT; postsegregational 40.2 5.7 0.00019 38.7 -0.1 34 76-119 35-68 (253)
419 1njg_A DNA polymerase III subu 38.3 24 0.00082 32.4 3.9 43 447-491 125-167 (250)
420 1jal_A YCHF protein; nucleotid 37.3 8.7 0.0003 40.2 0.7 22 74-103 3-24 (363)
421 1kao_A RAP2A; GTP-binding prot 37.3 19 0.00063 31.2 2.8 24 74-104 4-27 (167)
422 3cf0_A Transitional endoplasmi 37.3 5.3 0.00018 40.1 -1.0 31 79-119 55-85 (301)
423 4dgh_A Sulfate permease family 36.8 1.9E+02 0.0066 24.4 10.7 44 447-490 47-91 (130)
424 4fcw_A Chaperone protein CLPB; 36.7 4.3 0.00015 40.3 -1.7 26 278-304 120-145 (311)
425 3k53_A Ferrous iron transport 36.4 8.6 0.00029 37.8 0.4 44 286-333 144-187 (271)
426 1z2a_A RAS-related protein RAB 35.8 21 0.00072 31.0 3.0 26 73-105 5-30 (168)
427 3r20_A Cytidylate kinase; stru 35.4 5.1 0.00017 39.2 -1.4 15 291-305 110-124 (233)
428 1ek0_A Protein (GTP-binding pr 35.1 21 0.00072 31.0 2.8 24 74-104 4-27 (170)
429 3t5d_A Septin-7; GTP-binding p 34.5 11 0.00039 37.0 1.0 20 70-91 5-24 (274)
430 2i1q_A DNA repair and recombin 34.0 27 0.00092 35.0 3.8 60 447-506 203-291 (322)
431 4dgf_A Sulfate transporter sul 33.8 1E+02 0.0034 26.6 7.1 44 447-490 50-94 (135)
432 2erx_A GTP-binding protein DI- 33.7 26 0.00088 30.4 3.2 24 74-104 4-27 (172)
433 1ly1_A Polynucleotide kinase; 33.6 14 0.00048 33.0 1.4 13 77-91 6-18 (181)
434 3llo_A Prestin; STAS domain, c 33.6 1.3E+02 0.0045 25.9 7.9 44 447-490 62-106 (143)
435 3oiz_A Antisigma-factor antago 33.5 41 0.0014 27.6 4.2 41 447-487 42-83 (99)
436 1kht_A Adenylate kinase; phosp 33.4 14 0.00048 33.3 1.4 14 76-91 6-19 (192)
437 1c1y_A RAS-related protein RAP 32.7 25 0.00085 30.4 2.9 24 74-104 4-27 (167)
438 1z0j_A RAB-22, RAS-related pro 32.7 24 0.00082 30.7 2.8 25 73-104 6-30 (170)
439 3cm0_A Adenylate kinase; ATP-b 32.3 15 0.00051 33.2 1.4 14 76-91 7-20 (186)
440 2qgz_A Helicase loader, putati 32.3 16 0.00054 36.9 1.6 50 446-495 212-264 (308)
441 1ko7_A HPR kinase/phosphatase; 31.8 19 0.00067 36.8 2.2 45 65-116 131-183 (314)
442 2j9r_A Thymidine kinase; TK1, 31.7 56 0.0019 31.4 5.4 52 448-504 101-162 (214)
443 1gvn_B Zeta; postsegregational 31.5 15 0.00053 36.6 1.4 32 76-117 36-67 (287)
444 1r2q_A RAS-related protein RAB 31.4 25 0.00086 30.4 2.7 26 73-105 6-31 (170)
445 1g16_A RAS-related protein SEC 31.2 25 0.00084 30.6 2.6 25 73-104 3-27 (170)
446 2nzj_A GTP-binding protein REM 30.8 26 0.00088 30.7 2.7 24 73-103 4-27 (175)
447 1z08_A RAS-related protein RAB 30.6 27 0.00093 30.4 2.8 26 72-104 5-30 (170)
448 2rhm_A Putative kinase; P-loop 30.5 16 0.00054 33.2 1.2 14 76-91 8-21 (193)
449 1u8z_A RAS-related protein RAL 30.4 28 0.00097 30.0 2.9 24 74-104 5-28 (168)
450 1nks_A Adenylate kinase; therm 30.4 16 0.00054 33.0 1.2 13 77-91 5-17 (194)
451 2z0h_A DTMP kinase, thymidylat 30.2 17 0.00059 33.0 1.4 13 77-91 4-16 (197)
452 1ky3_A GTP-binding protein YPT 30.1 28 0.00096 30.6 2.8 25 73-104 8-32 (182)
453 2ce2_X GTPase HRAS; signaling 29.7 26 0.00089 30.1 2.5 24 74-104 4-27 (166)
454 2dy1_A Elongation factor G; tr 29.0 74 0.0025 35.7 6.6 44 445-493 96-139 (665)
455 3iij_A Coilin-interacting nucl 29.0 19 0.00064 32.5 1.4 12 78-91 16-27 (180)
456 3tqf_A HPR(Ser) kinase; transf 28.8 25 0.00087 33.0 2.3 28 68-102 6-38 (181)
457 1moz_A ARL1, ADP-ribosylation 28.5 21 0.00072 31.7 1.7 24 73-103 18-41 (183)
458 2qmh_A HPR kinase/phosphorylas 28.5 28 0.00097 33.4 2.6 29 67-102 23-56 (205)
459 1ega_A Protein (GTP-binding pr 28.5 12 0.0004 37.7 -0.1 21 76-104 11-31 (301)
460 1wms_A RAB-9, RAB9, RAS-relate 28.3 29 0.001 30.4 2.6 25 73-104 7-31 (177)
461 2ga8_A Hypothetical 39.9 kDa p 27.7 11 0.00038 39.3 -0.4 14 77-92 28-41 (359)
462 2g6b_A RAS-related protein RAB 27.3 35 0.0012 30.0 3.0 28 71-105 8-35 (180)
463 3llm_A ATP-dependent RNA helic 27.3 66 0.0023 30.4 5.1 52 446-497 174-227 (235)
464 3tw8_B RAS-related protein RAB 27.3 31 0.0011 30.2 2.6 24 73-103 9-32 (181)
465 1g8f_A Sulfate adenylyltransfe 27.2 15 0.00051 40.2 0.5 18 74-93 396-413 (511)
466 1xjc_A MOBB protein homolog; s 27.1 21 0.0007 33.1 1.3 12 78-91 9-20 (169)
467 3t34_A Dynamin-related protein 27.0 32 0.0011 35.2 2.9 59 429-488 153-212 (360)
468 2w58_A DNAI, primosome compone 26.9 8.4 0.00029 35.6 -1.4 46 278-328 116-164 (202)
469 3b1v_A Ferrous iron uptake tra 26.7 17 0.00058 36.0 0.7 23 74-104 4-26 (272)
470 3kkq_A RAS-related protein M-R 26.7 35 0.0012 30.2 2.9 26 72-104 17-42 (183)
471 2y8e_A RAB-protein 6, GH09086P 26.6 33 0.0011 30.0 2.6 24 74-104 15-38 (179)
472 2fn4_A P23, RAS-related protei 26.6 27 0.00091 30.7 2.0 24 73-103 9-32 (181)
473 3fb4_A Adenylate kinase; psych 26.4 22 0.00075 33.1 1.4 14 76-91 3-16 (216)
474 3con_A GTPase NRAS; structural 26.4 34 0.0012 30.6 2.7 24 74-104 22-45 (190)
475 4dsu_A GTPase KRAS, isoform 2B 26.3 35 0.0012 30.2 2.8 25 73-104 4-28 (189)
476 1mh1_A RAC1; GTP-binding, GTPa 26.2 36 0.0012 30.0 2.8 25 73-104 5-29 (186)
477 2oil_A CATX-8, RAS-related pro 26.0 38 0.0013 30.5 2.9 26 72-104 24-49 (193)
478 2q6t_A DNAB replication FORK h 26.0 1.5E+02 0.0052 31.0 8.2 54 429-487 263-317 (444)
479 3bc1_A RAS-related protein RAB 25.9 38 0.0013 30.0 2.9 26 73-105 11-36 (195)
480 1upt_A ARL1, ADP-ribosylation 25.8 29 0.00098 30.3 2.0 25 73-104 7-31 (171)
481 1sbo_A Putative anti-sigma fac 25.7 2.3E+02 0.008 22.5 7.7 41 449-489 44-85 (110)
482 2v54_A DTMP kinase, thymidylat 25.7 23 0.00078 32.4 1.4 14 76-91 7-20 (204)
483 3ny7_A YCHM protein, sulfate t 25.5 92 0.0031 26.3 5.2 42 447-489 44-86 (118)
484 2a9k_A RAS-related protein RAL 25.3 39 0.0013 29.8 2.9 25 73-104 18-42 (187)
485 2cxx_A Probable GTP-binding pr 25.2 33 0.0011 30.5 2.4 23 75-104 3-25 (190)
486 3q72_A GTP-binding protein RAD 25.1 28 0.00097 30.2 1.9 23 74-104 3-25 (166)
487 3l0i_B RAS-related protein RAB 25.0 29 0.00099 31.6 1.9 19 71-91 31-49 (199)
488 3t5g_A GTP-binding protein RHE 25.0 36 0.0012 30.1 2.6 25 73-104 6-30 (181)
489 1z06_A RAS-related protein RAB 25.0 39 0.0013 30.3 2.8 26 73-105 20-45 (189)
490 2c95_A Adenylate kinase 1; tra 24.8 23 0.00077 32.1 1.2 14 76-91 12-25 (196)
491 2bme_A RAB4A, RAS-related prot 24.8 37 0.0013 30.1 2.6 26 72-104 9-34 (186)
492 2ged_A SR-beta, signal recogni 24.8 30 0.001 31.1 2.0 25 73-104 48-72 (193)
493 2hxs_A RAB-26, RAS-related pro 24.8 32 0.0011 30.2 2.2 25 73-104 6-30 (178)
494 1m7b_A RND3/RHOE small GTP-bin 24.7 38 0.0013 30.2 2.7 26 72-104 6-31 (184)
495 3dl0_A Adenylate kinase; phosp 24.7 25 0.00084 32.8 1.4 14 76-91 3-16 (216)
496 3d8b_A Fidgetin-like protein 1 24.7 1.1E+02 0.0038 31.1 6.5 52 440-491 168-232 (357)
497 1e6c_A Shikimate kinase; phosp 24.7 25 0.00085 31.2 1.4 13 77-91 6-18 (173)
498 2lkc_A Translation initiation 24.6 38 0.0013 29.7 2.6 24 74-104 9-32 (178)
499 2orw_A Thymidine kinase; TMTK, 24.5 57 0.002 30.0 3.9 53 447-504 75-137 (184)
500 1zbd_A Rabphilin-3A; G protein 24.5 45 0.0015 30.2 3.2 25 73-104 8-32 (203)
No 1
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.3e-58 Score=516.83 Aligned_cols=364 Identities=19% Similarity=0.237 Sum_probs=276.7
Q ss_pred cccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEE---------EEccc
Q psy7365 53 ESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTA---------KIYDH 117 (601)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v---------~~~g~ 117 (601)
+||+|.|++. ..+++|+| ++.+ +||||| ||||| .++|+|+++|++|++ .++|.
T Consensus 25 ~~ls~~yg~~---~~~l~~vs-~i~~Ge~~~LvG~NGa--GKSTL------lk~l~Gl~~p~~G~~~~~~~~~~~~~~g~ 92 (538)
T 1yqt_A 25 EDCVHRYGVN---AFVLYRLP-VVKEGMVVGIVGPNGT--GKSTA------VKILAGQLIPNLCGDNDSWDGVIRAFRGN 92 (538)
T ss_dssp CCEEEECSTT---CCEEECCC-CCCTTSEEEEECCTTS--SHHHH------HHHHHTSSCCCTTTTCCSHHHHHHHTTTS
T ss_pred cCcEEEECCc---cccccCcC-cCCCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCCccCcchhhhHHhhCCc
Confidence 6899998642 24899999 8877 999999 56665 579999999999995 34565
Q ss_pred cCCCch---HHhcccEEEEccCCCCCCC---CCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHH
Q psy7365 118 DIRTDM---TTIRRSLGVCPQYNALFDK---LTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGM 191 (601)
Q Consensus 118 ~~~~~~---~~~~~~ig~v~Q~~~~~~~---~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~ 191 (601)
++.... ...+..+++++|+..+++. .|+.|++... +..+++.++++.+|+.+..++++.+|||||
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~---------~~~~~~~~~l~~lgl~~~~~~~~~~LSgGe 163 (538)
T 1yqt_A 93 ELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKA---------DETGKLEEVVKALELENVLEREIQHLSGGE 163 (538)
T ss_dssp THHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHH---------CSSSCHHHHHHHTTCTTTTTSBGGGCCHHH
T ss_pred cHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhh---------hHHHHHHHHHHHcCCChhhhCChhhCCHHH
Confidence 542111 1123468999998654332 3898887531 112357889999999999999999999999
Q ss_pred HhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHH
Q psy7365 192 QRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLF 271 (601)
Q Consensus 192 ~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 271 (601)
||||+||||| +.+
T Consensus 164 kQRv~iAraL--------------------------------------~~~----------------------------- 176 (538)
T 1yqt_A 164 LQRVAIAAAL--------------------------------------LRN----------------------------- 176 (538)
T ss_dssp HHHHHHHHHH--------------------------------------HSC-----------------------------
T ss_pred HHHHHHHHHH--------------------------------------hcC-----------------------------
Confidence 9999865433 233
Q ss_pred hhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccc------
Q psy7365 272 AMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCC------ 345 (601)
Q Consensus 272 ~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~------ 345 (601)
|++|||||||++||+.++..++++|+++. ..|+|||++|||++++..+|||+++|.+|.....
T Consensus 177 ------P~lLlLDEPTs~LD~~~~~~l~~~L~~l~-----~~g~tvi~vsHd~~~~~~~~dri~vl~~~~~~~~~~~~~~ 245 (538)
T 1yqt_A 177 ------ATFYFFDEPSSYLDIRQRLNAARAIRRLS-----EEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVYGIFSQPK 245 (538)
T ss_dssp ------CSEEEEESTTTTCCHHHHHHHHHHHHHHH-----HTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCE
T ss_pred ------CCEEEEECCcccCCHHHHHHHHHHHHHHH-----hcCCEEEEEeCCHHHHHHhCCEEEEEcCcccccccccchh
Confidence 58999999999999999999999999983 2589999999999999999999999975421100
Q ss_pred -----------c-----------C-------c--------ccc--cc---ccc------------cccc---cccccC--
Q psy7365 346 -----------G-----------S-------S--------VFL--KN---SFA------------RGYY---LSLDMK-- 366 (601)
Q Consensus 346 -----------G-----------~-------~--------~lL--k~---~~g------------~g~~---igld~~-- 366 (601)
+ . . ..+ ++ .++ .|.. +|.++.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGK 325 (538)
T 1yqt_A 246 GTRNGINEFLRGYLKDENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGK 325 (538)
T ss_dssp EHHHHHHHHHHTEETTTTEECSSSCCCCCCSSGGGSSCCCEEEEECCEEEEETTEEEEECCEEEETTCEEEEECCTTSSH
T ss_pred hHHHHHHHHhhhccchhhhcccccccccccCCcccccCCCeEEEEeeEEEEECCEEEEeCccccCCCCEEEEECCCCCCH
Confidence 0 0 0 000 00 000 0000 010100
Q ss_pred ------------C----cccccccccCCCCcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCc
Q psy7365 367 ------------S----APQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRT 430 (601)
Q Consensus 367 ------------~----~~~~~~ig~v~Q~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~ 430 (601)
. .....++||+||++..++.+||.|++...... ... ..+.++++++.+++.+..++++.+
T Consensus 326 STLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~~~l~~~~~~~~~~ 401 (538)
T 1yqt_A 326 TTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDAS-KLN---SNFYKTELLKPLGIIDLYDREVNE 401 (538)
T ss_dssp HHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHH-HHT---CHHHHHHTTTTTTCGGGTTSBGGG
T ss_pred HHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhcc-CCC---HHHHHHHHHHHcCChhhhcCChhh
Confidence 0 00134689999998877889998887653111 111 134578899999999899999999
Q ss_pred CChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccChhHHHhhCCEEEEEeC--CE
Q psy7365 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVS-EGRCVILTSHNMEECEALCTKLTIMVN--GQ 507 (601)
Q Consensus 431 LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~-~G~tVllsTHdl~e~~~l~drv~iL~~--G~ 507 (601)
|||||||||+||+||+.+|++|||||||+|||+.++..++++|+++++ .|+|||++|||++++..+||||++|++ |+
T Consensus 402 LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~ 481 (538)
T 1yqt_A 402 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGK 481 (538)
T ss_dssp CCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTT
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcce
Confidence 999999999999999999999999999999999999999999999864 599999999999999999999999986 78
Q ss_pred EEEecCHHHHHH
Q psy7365 508 FTCLGSATHLKS 519 (601)
Q Consensus 508 iv~~G~~~~L~~ 519 (601)
+.+.|+|+++..
T Consensus 482 ~~~~g~~~~~~~ 493 (538)
T 1yqt_A 482 YGRALPPMGMRE 493 (538)
T ss_dssp EEEECCCEEHHH
T ss_pred EeecCCHHHHHh
Confidence 889999988764
No 2
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=4.3e-58 Score=518.51 Aligned_cols=364 Identities=19% Similarity=0.246 Sum_probs=277.3
Q ss_pred cccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEE---------EEccc
Q psy7365 53 ESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTA---------KIYDH 117 (601)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v---------~~~g~ 117 (601)
++|++.|+.. ..+++|+| ++.+ +||||| ||||| .++|+|+++|++|++ .++|.
T Consensus 95 ~~ls~~yg~~---~~~l~~vs-~i~~Ge~~~LiG~NGs--GKSTL------lkiL~Gll~p~~G~~~~~~~~~~~~~~G~ 162 (607)
T 3bk7_A 95 EDCVHRYGVN---AFVLYRLP-IVKDGMVVGIVGPNGT--GKTTA------VKILAGQLIPNLCEDNDSWDNVIRAFRGN 162 (607)
T ss_dssp GSEEEECSTT---CCEEECCC-CCCTTSEEEEECCTTS--SHHHH------HHHHTTSSCCCTTTTCCCHHHHHHHTTTS
T ss_pred CCeEEEECCC---CeeeCCCC-CCCCCCEEEEECCCCC--hHHHH------HHHHhCCCCCCCCccccccchhhheeCCE
Confidence 7888888532 24899999 8766 999999 56655 579999999999996 34565
Q ss_pred cCCCch---HHhcccEEEEccCCCCCC---CCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHH
Q psy7365 118 DIRTDM---TTIRRSLGVCPQYNALFD---KLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGM 191 (601)
Q Consensus 118 ~~~~~~---~~~~~~ig~v~Q~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~ 191 (601)
++.... ...+..+++++|+..+++ ..||.||+.+. . ..++++++++.+||++..++++.+|||||
T Consensus 163 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~----~-----~~~~~~~~L~~lgL~~~~~~~~~~LSGGe 233 (607)
T 3bk7_A 163 ELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV----D-----EVGKFEEVVKELELENVLDRELHQLSGGE 233 (607)
T ss_dssp THHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT----C-----CSSCHHHHHHHTTCTTGGGSBGGGCCHHH
T ss_pred ehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh----H-----HHHHHHHHHHHcCCCchhCCChhhCCHHH
Confidence 542211 112346899999854322 23999998641 1 12357789999999999999999999999
Q ss_pred HhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHH
Q psy7365 192 QRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLF 271 (601)
Q Consensus 192 ~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 271 (601)
||||+||||| +++
T Consensus 234 kQRvaIAraL--------------------------------------~~~----------------------------- 246 (607)
T 3bk7_A 234 LQRVAIAAAL--------------------------------------LRK----------------------------- 246 (607)
T ss_dssp HHHHHHHHHH--------------------------------------HSC-----------------------------
T ss_pred HHHHHHHHHH--------------------------------------hcC-----------------------------
Confidence 9999865433 233
Q ss_pred hhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCcccc-------
Q psy7365 272 AMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQC------- 344 (601)
Q Consensus 272 ~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~------- 344 (601)
|++|||||||++||+.++..++++|+++. ..|+|||++|||++++..+|||+++|.++....
T Consensus 247 ------P~lLlLDEPTs~LD~~~~~~l~~~L~~l~-----~~g~tvIivsHdl~~~~~~adri~vl~~~~~~~g~~~~~~ 315 (607)
T 3bk7_A 247 ------AHFYFFDEPSSYLDIRQRLKVARVIRRLA-----NEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPK 315 (607)
T ss_dssp ------CSEEEEECTTTTCCHHHHHHHHHHHHHHH-----HTTCEEEEECSCHHHHHHHCSEEEEEESCTTTEEEECCCE
T ss_pred ------CCEEEEECCcccCCHHHHHHHHHHHHHHH-----hcCCEEEEEecChHHHHhhCCEEEEECCCccccceeccch
Confidence 58999999999999999999999999983 258999999999999999999999997542110
Q ss_pred ----------cc---------C---------c--------ccc--cc---ccc------------cccc---ccccc---
Q psy7365 345 ----------CG---------S---------S--------VFL--KN---SFA------------RGYY---LSLDM--- 365 (601)
Q Consensus 345 ----------~G---------~---------~--------~lL--k~---~~g------------~g~~---igld~--- 365 (601)
.+ . . ..+ ++ .++ .|.. +|-++
T Consensus 316 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~l~~~~~~v~~Gei~~i~G~NGsGK 395 (607)
T 3bk7_A 316 GTRNGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGK 395 (607)
T ss_dssp EHHHHHHHHHHTEETTTTEECCSSCCCCCCSTTSCCCCCCEEEEECCEEEECSSCEEEECCEEEETTCEEEEECCTTSSH
T ss_pred hHHHHHHHHHhhcchhhhhhccccccccccCCCcccccCceEEEEeceEEEecceEEEecccccCCCCEEEEECCCCCCH
Confidence 00 0 0 000 00 000 0000 01000
Q ss_pred -----------CC----cccccccccCCCCcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCc
Q psy7365 366 -----------KS----APQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRT 430 (601)
Q Consensus 366 -----------~~----~~~~~~ig~v~Q~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~ 430 (601)
.. .....++||+||++.+++.+||.|++.+.... .. ...+++.++++.+++.+..++++.+
T Consensus 396 STLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~-~~---~~~~~~~~~l~~~~l~~~~~~~~~~ 471 (607)
T 3bk7_A 396 TTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSS-KL---NSNFYKTELLKPLGIIDLYDRNVED 471 (607)
T ss_dssp HHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHH-HH---HCHHHHHHTHHHHTCTTTTTSBGGG
T ss_pred HHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhcc-CC---CHHHHHHHHHHHcCCchHhcCChhh
Confidence 00 00135699999998877889999988654110 00 1134678899999999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEccChhHHHhhCCEEEEEeC--CE
Q psy7365 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAV-SEGRCVILTSHNMEECEALCTKLTIMVN--GQ 507 (601)
Q Consensus 431 LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~-~~G~tVllsTHdl~e~~~l~drv~iL~~--G~ 507 (601)
|||||||||+||+||+.+|++|||||||+|||+.++..++++|+++. ++|+|||++|||++++..+|||+++|++ |+
T Consensus 472 LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~ 551 (607)
T 3bk7_A 472 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGR 551 (607)
T ss_dssp CCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTT
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcce
Confidence 99999999999999999999999999999999999999999999986 4699999999999999999999999986 88
Q ss_pred EEEecCHHHHHH
Q psy7365 508 FTCLGSATHLKS 519 (601)
Q Consensus 508 iv~~G~~~~L~~ 519 (601)
+.+.|+|+++..
T Consensus 552 ~~~~g~p~~~~~ 563 (607)
T 3bk7_A 552 HGRALPPMGMRE 563 (607)
T ss_dssp EEEECCCEEHHH
T ss_pred EEecCCHHHHHh
Confidence 888999988765
No 3
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.1e-54 Score=527.45 Aligned_cols=204 Identities=24% Similarity=0.297 Sum_probs=161.8
Q ss_pred hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365 50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D 122 (601)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~ 122 (601)
+.++||++.|+.. .+.++|+|+||++.+ +||||| ||||| .++|+|+++|++|+|.++|.++.. +
T Consensus 388 i~~~~v~~~y~~~-~~~~vL~~isl~i~~G~~~~ivG~sGs--GKSTl------~~ll~g~~~~~~G~i~i~g~~i~~~~ 458 (1284)
T 3g5u_A 388 LEFKNIHFSYPSR-KEVQILKGLNLKVKSGQTVALVGNSGC--GKSTT------VQLMQRLYDPLDGMVSIDGQDIRTIN 458 (1284)
T ss_dssp EEEEEEEECCSST-TSCCSEEEEEEEECTTCEEEEECCSSS--SHHHH------HHHTTTSSCCSEEEEEETTEEGGGSC
T ss_pred EEEEEEEEEcCCC-CCCcceecceEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCeEEEECCEEHHhCC
Confidence 4599999998532 245799999999988 999999 56655 579999999999999999999864 4
Q ss_pred hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHH-----HHHHHHc--CCCcccCCccccCChHHHhhh
Q psy7365 123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEI-----SNMIGDL--GIPHKRTSLANTLSGGMQRKL 195 (601)
Q Consensus 123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--gl~~~~~~~~~~LSgG~~qr~ 195 (601)
...+|+.+|||||+|.+|+. ||+||+.|+... .+.++..+.+ .+.++.+ |++...++...+||||||||+
T Consensus 459 ~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~Qri 535 (1284)
T 3g5u_A 459 VRYLREIIGVVSQEPVLFAT-TIAENIRYGRED--VTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRI 535 (1284)
T ss_dssp HHHHHHHEEEECSSCCCCSS-CHHHHHHHHCSS--CCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHH
T ss_pred HHHHHhheEEEcCCCccCCc-cHHHHHhcCCCC--CCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHH
Confidence 55678889999999999865 999999997542 2333332222 2334443 334445667789999999999
Q ss_pred hchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhcc
Q psy7365 196 DNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSF 275 (601)
Q Consensus 196 ~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 275 (601)
+||||++.+
T Consensus 536 aiARal~~~----------------------------------------------------------------------- 544 (1284)
T 3g5u_A 536 AIARALVRN----------------------------------------------------------------------- 544 (1284)
T ss_dssp HHHHHHHHC-----------------------------------------------------------------------
T ss_pred HHHHHHhcC-----------------------------------------------------------------------
Confidence 876554333
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccc
Q psy7365 276 VPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCC 345 (601)
Q Consensus 276 ~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~ 345 (601)
|++||||||||+||+.+.+.+.+.++++ .+|+|+|++||+++++.. ||+|++|++|+++..
T Consensus 545 --p~iliLDEpts~LD~~~~~~i~~~l~~~------~~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~~~ 605 (1284)
T 3g5u_A 545 --PKILLLDEATSALDTESEAVVQAALDKA------REGRTTIVIAHRLSTVRN-ADVIAGFDGGVIVEQ 605 (1284)
T ss_dssp --CSEEEEESTTCSSCHHHHHHHHHHHHHH------HTTSEEEEECSCHHHHTT-CSEEEECSSSCCCCE
T ss_pred --CCEEEEECCCCCCCHHHHHHHHHHHHHH------cCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEE
Confidence 4899999999999999999999999876 258999999999999876 999999999998643
No 4
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=7.7e-55 Score=498.66 Aligned_cols=366 Identities=21% Similarity=0.270 Sum_probs=235.8
Q ss_pred ccceeecceEEeec------ccCCCCCCCccccc---------------hhhhHHHhccCCCCCC-------eeEEEEcc
Q psy7365 65 DSYGISDTSLEEQP------LGPSGITLGLHTLG---------------LEFVSRSMLMGMLPVS-------SGTAKIYD 116 (601)
Q Consensus 65 ~~~~~~~~~~~~~~------~g~~g~~~g~~~~g---------------~~~~~~~~l~Gl~~~~-------~G~v~~~g 116 (601)
..++|+|+||++.+ +||||| |||||- -+....+++.|+.+|+ .|.|.++|
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGa--GKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~ 107 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGS--GKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQ 107 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTS--SHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESS
T ss_pred CccceeccEEEECCCCEEEEECCCCC--CHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecC
Confidence 45689999999988 999999 677661 1111237889999998 55666666
Q ss_pred ccCCCchHHhcccEEEEccCC-------------------CCCCCCCHHHHHHHhHhhc--CCChHHHH------HHHHH
Q psy7365 117 HDIRTDMTTIRRSLGVCPQYN-------------------ALFDKLTVEEHMWFYSQLK--QVPKDLAQ------LEISN 169 (601)
Q Consensus 117 ~~~~~~~~~~~~~ig~v~Q~~-------------------~~~~~~tv~e~l~~~~~~~--~~~~~~~~------~~~~~ 169 (601)
.+.... .+..+|++||.+ ..++.+||.||+.|+.... ........ .+..+
T Consensus 108 ~~~~~~---~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (670)
T 3ux8_A 108 KTTSRN---PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLG 184 (670)
T ss_dssp CC--------CCBHHHHTTCC-------------------------CC--------------------------CHHHHH
T ss_pred chhhcc---chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHH
Confidence 554221 123444444433 2356789999998753221 11111000 11124
Q ss_pred HHHHcCCCcc-cCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhh
Q psy7365 170 MIGDLGIPHK-RTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTH 248 (601)
Q Consensus 170 ~l~~~gl~~~-~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~ 248 (601)
+++.+||.+. .++++.+|||||||||+||||| +++|
T Consensus 185 ~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL--------------------------------------~~~p----- 221 (670)
T 3ux8_A 185 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQI--------------------------------------GSRL----- 221 (670)
T ss_dssp HHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHH--------------------------------------HTCC-----
T ss_pred HHHHcCCchhhhcCCcccCCHHHHHHHHHHHHH--------------------------------------hhCC-----
Confidence 6899999875 7999999999999999865543 3333
Q ss_pred HHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHH
Q psy7365 249 KQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEAD 328 (601)
Q Consensus 249 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~ 328 (601)
.|++|||||||+||||..+..++++|+++. ..|+|||+||||++++.
T Consensus 222 ----------------------------~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~-----~~g~tvi~vtHd~~~~~ 268 (670)
T 3ux8_A 222 ----------------------------TGVLYVLDEPSIGLHQRDNDRLIATLKSMR-----DLGNTLIVVEHDEDTML 268 (670)
T ss_dssp ----------------------------CSCEEEEECTTTTCCGGGHHHHHHHHHHHH-----HTTCEEEEECCCHHHHH
T ss_pred ----------------------------CCCEEEEECCccCCCHHHHHHHHHHHHHHH-----HcCCEEEEEeCCHHHHh
Confidence 145999999999999999999999999983 35899999999999865
Q ss_pred hcCCEEEEe------cCCccccccCccccc-------------------c----ccc----------------------c
Q psy7365 329 LLGDRIAII------AAGKLQCCGSSVFLK-------------------N----SFA----------------------R 357 (601)
Q Consensus 329 ~l~Drv~vL------~~GkIv~~G~~~lLk-------------------~----~~g----------------------~ 357 (601)
.||++++| .+|+++..+++..+. . ... .
T Consensus 269 -~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vsl~I~~ 347 (670)
T 3ux8_A 269 -AADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLTGQYLSGKKFIPIPAERRRPDGRWLEVVGAREHNLKNVSVKIPL 347 (670)
T ss_dssp -HCSEEEEECSSSGGGCCSEEEEECHHHHHTCTTCHHHHHHTTSSCCCCCSSCCCCCSCEEEEEEECSTTCCSEEEEEET
T ss_pred -hCCEEEEecccccccCCEEEEecCHHHHhcCchhHHHHHhccccccccccccccccccceeecCccccccccceeEecC
Confidence 59999999 788887655321000 0 000 0
Q ss_pred cc---ccccccC--C-----------------------------------------------cc----------------
Q psy7365 358 GY---YLSLDMK--S-----------------------------------------------AP---------------- 369 (601)
Q Consensus 358 g~---~igld~~--~-----------------------------------------------~~---------------- 369 (601)
|. ++|-++. + .+
T Consensus 348 Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (670)
T 3ux8_A 348 GTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRD 427 (670)
T ss_dssp TSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGCSEEEECCSSCSCSSTTCCHHHHHTHHHHHHH
T ss_pred CCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccccCceeEeccccCCCCCCcchhhhhhhhHHHHH
Confidence 00 0000000 0 00
Q ss_pred ----------------------------cccccccCCCCccc--------------------------------CCCCCH
Q psy7365 370 ----------------------------QKSYIGYCPQFDAL--------------------------------NDRLTP 389 (601)
Q Consensus 370 ----------------------------~~~~ig~v~Q~~~l--------------------------------~~~lTv 389 (601)
.....|+++|+..+ +..+|+
T Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ltv 507 (670)
T 3ux8_A 428 VFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTV 507 (670)
T ss_dssp HHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCBTTBCHHHHHTSBH
T ss_pred HhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhheeecCCCHHHHhhCCH
Confidence 00001222222111 124789
Q ss_pred HHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCc-ccccccCcCChHHHHHHHHHHHHhCCC---CEEEEECCCCCCCHHH
Q psy7365 390 REHLEFYSRVRNLPSVLLNTIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTAIALLGNT---PLIFLDEPTSGMDPGA 465 (601)
Q Consensus 390 ~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~-~~~~~~~~LSgGqkQRl~lA~AL~~~P---~lLlLDEPTsGLD~~~ 465 (601)
.||+.|+... ...++..+.++.+++.. ..++++.+|||||||||+|||||+++| ++|||||||+|||+.+
T Consensus 508 ~e~l~~~~~~------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~ 581 (670)
T 3ux8_A 508 EDALDFFASI------PKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDD 581 (670)
T ss_dssp HHHHHHTTTC------HHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHH
T ss_pred HHHHHHHHHh------hhHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHH
Confidence 9998875321 11245667888999964 568999999999999999999999887 5999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEE------eCCEEEEecCHHHHHH
Q psy7365 466 RRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIM------VNGQFTCLGSATHLKS 519 (601)
Q Consensus 466 ~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL------~~G~iv~~G~~~~L~~ 519 (601)
+..++++|++++++|+|||++|||++++. .||||++| ++|++++.|+++++.+
T Consensus 582 ~~~i~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~ 640 (670)
T 3ux8_A 582 IARLLDVLHRLVDNGDTVLVIEHNLDVIK-TADYIIDLGPEGGDRGGQIVAVGTPEEVAE 640 (670)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEEEEESSSGGGCCEEEEEECHHHHHT
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCHHHHH-hCCEEEEecCCcCCCCCEEEEecCHHHHHh
Confidence 99999999999888999999999999885 69999999 8999999999999964
No 5
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.6e-55 Score=489.71 Aligned_cols=341 Identities=24% Similarity=0.265 Sum_probs=253.5
Q ss_pred ccCCCCCCCccccchhhhHHHhccCCCCCCeeEE-----------EEccccCCCchH---HhcccEEEEccCCCC---CC
Q psy7365 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTA-----------KIYDHDIRTDMT---TIRRSLGVCPQYNAL---FD 141 (601)
Q Consensus 79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v-----------~~~g~~~~~~~~---~~~~~ig~v~Q~~~~---~~ 141 (601)
+||||| ||||| .|+|+|+++|++|+| .++|.++..... .....+...+|...+ +.
T Consensus 31 iGpNGa--GKSTL------lkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (538)
T 3ozx_A 31 LGKNGV--GKTTV------LKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFL 102 (538)
T ss_dssp ECCTTS--SHHHH------HHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTTC
T ss_pred ECCCCC--cHHHH------HHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhhc
Confidence 999999 56665 679999999999998 567766532111 112245555555432 22
Q ss_pred CCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhh
Q psy7365 142 KLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVI 221 (601)
Q Consensus 142 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~ 221 (601)
..++.+++... ..+++++++++.+|+.+..++++.+|||||||||+|||||+
T Consensus 103 ~~~v~~~l~~~---------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~------------------- 154 (538)
T 3ozx_A 103 KGTVNEILTKI---------DERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLL------------------- 154 (538)
T ss_dssp CSBHHHHHHHH---------CCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHH-------------------
T ss_pred cCcHHHHhhcc---------hhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH-------------------
Confidence 34787765321 11235678899999999999999999999999998654432
Q ss_pred HhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHH
Q psy7365 222 LRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWEL 301 (601)
Q Consensus 222 ~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~ 301 (601)
.+ |++|||||||++||+.++..++++
T Consensus 155 -------------------~~-----------------------------------p~illlDEPts~LD~~~~~~l~~~ 180 (538)
T 3ozx_A 155 -------------------RE-----------------------------------ADVYIFDQPSSYLDVRERMNMAKA 180 (538)
T ss_dssp -------------------SC-----------------------------------CSEEEEESTTTTCCHHHHHHHHHH
T ss_pred -------------------cC-----------------------------------CCEEEEECCcccCCHHHHHHHHHH
Confidence 33 589999999999999999999999
Q ss_pred HHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccc-----------------c---------C--c-cc-c
Q psy7365 302 LIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCC-----------------G---------S--S-VF-L 351 (601)
Q Consensus 302 l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~-----------------G---------~--~-~l-L 351 (601)
|+++ +. |+|||++|||++++..+||+++++.+|..... + . . .. .
T Consensus 181 l~~l-----~~-g~tii~vsHdl~~~~~~~d~i~vl~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~~~~~ 254 (538)
T 3ozx_A 181 IREL-----LK-NKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAARVGINNFLKGYLPAENMKIRPDEIKFML 254 (538)
T ss_dssp HHHH-----CT-TSEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHHHHHHHHTEETTTTEECSSSCCCCSC
T ss_pred HHHH-----hC-CCEEEEEEeChHHHHhhCCEEEEecCCcccccccchhhhHHHHHHHHHhhhchhhhhhccchhhhccc
Confidence 9998 23 89999999999999999999999976432110 0 0 0 00 0
Q ss_pred c---c------------------ccc------------cccc---cccccC--------------C-----ccccccccc
Q psy7365 352 K---N------------------SFA------------RGYY---LSLDMK--------------S-----APQKSYIGY 376 (601)
Q Consensus 352 k---~------------------~~g------------~g~~---igld~~--------------~-----~~~~~~ig~ 376 (601)
. . .++ .|.+ +|.++. . ....+.++|
T Consensus 255 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~ 334 (538)
T 3ozx_A 255 KEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSY 334 (538)
T ss_dssp C----------CCEEEEECCEEEEETTEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEE
T ss_pred cccccccccccccceEEEcceEEEECCEEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEe
Confidence 0 0 000 0000 111100 0 011356899
Q ss_pred CCCCcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEEC
Q psy7365 377 CPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDE 456 (601)
Q Consensus 377 v~Q~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDE 456 (601)
+||+....+.+||.||+.+..... ... ....++++++.+++.+..++++.+|||||||||+||+||+.+|++|||||
T Consensus 335 ~~q~~~~~~~~tv~~~l~~~~~~~-~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDE 411 (538)
T 3ozx_A 335 KPQRIFPNYDGTVQQYLENASKDA-LST--SSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQ 411 (538)
T ss_dssp ECSSCCCCCSSBHHHHHHHHCSST-TCT--TSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEES
T ss_pred echhcccccCCCHHHHHHHhhhhc-cch--hHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 999877667889999998742111 111 12457889999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccChhHHHhhCCEEEEEeC--CEEEEecCHHHHH
Q psy7365 457 PTSGMDPGARRFLWTCIERAVS-EGRCVILTSHNMEECEALCTKLTIMVN--GQFTCLGSATHLK 518 (601)
Q Consensus 457 PTsGLD~~~~~~i~~lL~~l~~-~G~tVllsTHdl~e~~~l~drv~iL~~--G~iv~~G~~~~L~ 518 (601)
||+|||+.++.+++++|+++++ .|+|||++|||++++..+||||++|++ |.....+++.++.
T Consensus 412 PT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 412 PSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred CccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 9999999999999999999975 599999999999999999999999986 5666667665543
No 6
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-55 Score=493.17 Aligned_cols=366 Identities=17% Similarity=0.208 Sum_probs=262.0
Q ss_pred ccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEE-----------Ecc
Q psy7365 54 SLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAK-----------IYD 116 (601)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~-----------~~g 116 (601)
++++.|+.. ...+++++ .+.+ +||||| ||||| .++|+|+++|++|+|. +.|
T Consensus 82 ~~~~~Y~~~---~~~l~~l~-~~~~Gei~~LvGpNGa--GKSTL------LkiL~Gll~P~~G~i~~~~~~~~~~~~~~g 149 (608)
T 3j16_B 82 HVTHRYSAN---SFKLHRLP-TPRPGQVLGLVGTNGI--GKSTA------LKILAGKQKPNLGRFDDPPEWQEIIKYFRG 149 (608)
T ss_dssp TEEEECSTT---SCEEECCC-CCCTTSEEEEECCTTS--SHHHH------HHHHHTSSCCCTTTTCCSSCHHHHHHHTTT
T ss_pred CeEEEECCC---ceeecCCC-CCCCCCEEEEECCCCC--hHHHH------HHHHhcCCCCCCceEecccchhhhhheecC
Confidence 455665432 22455554 3434 999999 56655 6799999999999983 233
Q ss_pred ccCCCch-HHhccc--EEEEccCCCCC------CCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccC
Q psy7365 117 HDIRTDM-TTIRRS--LGVCPQYNALF------DKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTL 187 (601)
Q Consensus 117 ~~~~~~~-~~~~~~--ig~v~Q~~~~~------~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~L 187 (601)
.++.... ...... ..+.+|....+ +..++.+++.... ....+++.++++.+||.+..++++.+|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~-------~~~~~~~~~~l~~~gl~~~~~~~~~~L 222 (608)
T 3j16_B 150 SELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM-------EKSPEDVKRYIKILQLENVLKRDIEKL 222 (608)
T ss_dssp STHHHHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHC-------CSCHHHHHHHHHHHTCTGGGGSCTTTC
T ss_pred hhhhhhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhh-------hhHHHHHHHHHHHcCCcchhCCChHHC
Confidence 3221100 011112 23344442211 1235555543211 112356889999999999999999999
Q ss_pred ChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHH
Q psy7365 188 SGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAV 267 (601)
Q Consensus 188 SgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~ 267 (601)
||||||||+||+|| +++
T Consensus 223 SgGe~Qrv~iAraL--------------------------------------~~~------------------------- 239 (608)
T 3j16_B 223 SGGELQRFAIGMSC--------------------------------------VQE------------------------- 239 (608)
T ss_dssp CHHHHHHHHHHHHH--------------------------------------HSC-------------------------
T ss_pred CHHHHHHHHHHHHH--------------------------------------HhC-------------------------
Confidence 99999999865433 233
Q ss_pred HHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCcccccc-
Q psy7365 268 TVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG- 346 (601)
Q Consensus 268 ~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G- 346 (601)
|++|||||||++||+.++..++++|+++. .+|+|||++|||++++..+|||+++|.+|......
T Consensus 240 ----------p~llllDEPts~LD~~~~~~l~~~l~~l~-----~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~~~~~~ 304 (608)
T 3j16_B 240 ----------ADVYMFDEPSSYLDVKQRLNAAQIIRSLL-----APTKYVICVEHDLSVLDYLSDFVCIIYGVPSVYGVV 304 (608)
T ss_dssp ----------CSEEEEECTTTTCCHHHHHHHHHHHHGGG-----TTTCEEEEECSCHHHHHHHCSEEEEEESCTTTEEEE
T ss_pred ----------CCEEEEECcccCCCHHHHHHHHHHHHHHH-----hCCCEEEEEeCCHHHHHHhCCEEEEEeCCcccccee
Confidence 58999999999999999999999999883 45899999999999999999999999765421100
Q ss_pred ---------------C--------------------c---ccc--cc-c--c--------------ccc--------ccc
Q psy7365 347 ---------------S--------------------S---VFL--KN-S--F--------------ARG--------YYL 361 (601)
Q Consensus 347 ---------------~--------------------~---~lL--k~-~--~--------------g~g--------~~i 361 (601)
. . ... .. . + ..| -++
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~ii 384 (608)
T 3j16_B 305 TLPASVREGINIFLDGHIPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMM 384 (608)
T ss_dssp CCCEEHHHHHHHHHHTEETTTTEECSSSCCCCCCSSSSCCCCCCSSSSCCEECCEEEECSSCEEEECCEECCTTCEEEEE
T ss_pred cCchhHHHHHHHhhccccchhhhccccccccccccccccceeeeccceeEEecCcccccCceEEEEecCccccceEEEEE
Confidence 0 0 000 00 0 0 000 011
Q ss_pred ccccC--------------C----cccccccccCCCCcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcc
Q psy7365 362 SLDMK--------------S----APQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHY 423 (601)
Q Consensus 362 gld~~--------------~----~~~~~~ig~v~Q~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~ 423 (601)
|.++. . ...+..++|+||+.......||++++... ..+... ....++++++.++|.+.
T Consensus 385 G~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~--~~~~~~--~~~~~~~~l~~l~l~~~ 460 (608)
T 3j16_B 385 GENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKK--IRGQFL--NPQFQTDVVKPLRIDDI 460 (608)
T ss_dssp SCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHH--CSSTTT--SHHHHHHTHHHHTSTTT
T ss_pred CCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHH--hhcccc--cHHHHHHHHHHcCChhh
Confidence 11100 0 00124589999997766678999987532 222111 12456789999999999
Q ss_pred cccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEccChhHHHhhCCEEEE
Q psy7365 424 SDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAV-SEGRCVILTSHNMEECEALCTKLTI 502 (601)
Q Consensus 424 ~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~-~~G~tVllsTHdl~e~~~l~drv~i 502 (601)
.++++.+|||||||||+||+||+.+|++|||||||+|||+.++..++++|+++. +.|+|||++|||++++..+||||++
T Consensus 461 ~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrviv 540 (608)
T 3j16_B 461 IDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIV 540 (608)
T ss_dssp SSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEE
T ss_pred hcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 999999999999999999999999999999999999999999999999999986 4599999999999999999999999
Q ss_pred EeC--CEEEEecCHHHHHHH
Q psy7365 503 MVN--GQFTCLGSATHLKSK 520 (601)
Q Consensus 503 L~~--G~iv~~G~~~~L~~~ 520 (601)
|++ |++++.|+|+++...
T Consensus 541 l~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 541 FEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp CEEETTTEEECCCCEEHHHH
T ss_pred EeCCCCeEEecCChHHHhhh
Confidence 996 899999999988653
No 7
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=3.7e-51 Score=497.72 Aligned_cols=199 Identities=24% Similarity=0.298 Sum_probs=160.6
Q ss_pred hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365 50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D 122 (601)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~ 122 (601)
+.++|+++.|.+. .+.++|+|+||++++ +||||| ||||| .++|.|+++|++|+|.++|.+++. +
T Consensus 416 I~~~nvsF~Y~~~-~~~~vL~~isl~i~~G~~vaivG~sGs--GKSTl------l~ll~~~~~~~~G~I~idG~~i~~~~ 486 (1321)
T 4f4c_A 416 ITVENVHFTYPSR-PDVPILRGMNLRVNAGQTVALVGSSGC--GKSTI------ISLLLRYYDVLKGKITIDGVDVRDIN 486 (1321)
T ss_dssp EEEEEEEECCSSS-TTSCSEEEEEEEECTTCEEEEEECSSS--CHHHH------HHHHTTSSCCSEEEEEETTEETTTSC
T ss_pred EEEEEeeeeCCCC-CCCceeeceEEeecCCcEEEEEecCCC--cHHHH------HHHhccccccccCcccCCCccchhcc
Confidence 4599999997432 256799999999998 999999 56654 579999999999999999999976 5
Q ss_pred hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCC-----------cccCCccccCChHH
Q psy7365 123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIP-----------HKRTSLANTLSGGM 191 (601)
Q Consensus 123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LSgG~ 191 (601)
...+|+.||||+|+|.+| +-|++||+.|+... .+.+ ++.++++..++. -.......+|||||
T Consensus 487 ~~~lr~~i~~v~Q~~~Lf-~~TI~eNI~~g~~~--~~~~----~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQ 559 (1321)
T 4f4c_A 487 LEFLRKNVAVVSQEPALF-NCTIEENISLGKEG--ITRE----EMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQ 559 (1321)
T ss_dssp HHHHHHHEEEECSSCCCC-SEEHHHHHHTTCTT--CCHH----HHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHH
T ss_pred HHHHhhcccccCCcceee-CCchhHHHhhhccc--chHH----HHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHH
Confidence 667888999999999998 56999999987432 2333 344555554432 23345567899999
Q ss_pred HhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHH
Q psy7365 192 QRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLF 271 (601)
Q Consensus 192 ~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 271 (601)
|||++||||++.|
T Consensus 560 kQRiaiARAl~~~------------------------------------------------------------------- 572 (1321)
T 4f4c_A 560 KQRIAIARALVRN------------------------------------------------------------------- 572 (1321)
T ss_dssp HHHHHHHHHHTTC-------------------------------------------------------------------
T ss_pred HHHHHHHHHHccC-------------------------------------------------------------------
Confidence 9999876654433
Q ss_pred hhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCcccc
Q psy7365 272 AMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQC 344 (601)
Q Consensus 272 ~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~ 344 (601)
|++||||||||+||+.+...+.+.|.++ .+|+|+|++||+++.+ +.||+|++|++|+|+.
T Consensus 573 ------~~IliLDE~tSaLD~~te~~i~~~l~~~------~~~~T~iiiaHrls~i-~~aD~Iivl~~G~ive 632 (1321)
T 4f4c_A 573 ------PKILLLDEATSALDAESEGIVQQALDKA------AKGRTTIIIAHRLSTI-RNADLIISCKNGQVVE 632 (1321)
T ss_dssp ------CSEEEEESTTTTSCTTTHHHHHHHHHHH------HTTSEEEEECSCTTTT-TTCSEEEEEETTEEEE
T ss_pred ------CCEEEEecccccCCHHHHHHHHHHHHHH------hCCCEEEEEcccHHHH-HhCCEEEEeeCCeeec
Confidence 4899999999999999999999999887 2589999999999976 5799999999999853
No 8
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=2.9e-51 Score=478.93 Aligned_cols=351 Identities=21% Similarity=0.226 Sum_probs=257.4
Q ss_pred cchhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccC
Q psy7365 46 GAYVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDI 119 (601)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~ 119 (601)
+..+. ..++++.|++ ..+++|+||++.+ +||||| ||||| .++|+| |+| +|.+.
T Consensus 433 ~~~L~-~~~ls~~yg~----~~iL~~vsl~I~~Ge~v~LiGpNGs--GKSTL------Lk~Lag------G~i--~g~~~ 491 (986)
T 2iw3_A 433 GEDLC-NCEFSLAYGA----KILLNKTQLRLKRARRYGICGPNGC--GKSTL------MRAIAN------GQV--DGFPT 491 (986)
T ss_dssp SCEEE-EEEEEEEETT----EEEEEEEEEEEETTCEEEEECSTTS--SHHHH------HHHHHH------TCS--TTCCC
T ss_pred cceeE-EeeEEEEECC----EEeEecceEEEcCCCEEEEECCCCC--CHHHH------HHHHhC------CCc--CCCcc
Confidence 44444 5589998853 4699999999988 999999 56655 568884 443 45443
Q ss_pred CCchHHhcccEEEEccCC-CCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCC-cccCCccccCChHHHhhhhc
Q psy7365 120 RTDMTTIRRSLGVCPQYN-ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIP-HKRTSLANTLSGGMQRKLDN 197 (601)
Q Consensus 120 ~~~~~~~~~~ig~v~Q~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~~qr~~~ 197 (601)
.. ..+++|++|++ .+++.+||.||+.+ ...+. ++++.++++.+|+. +..++++.+||||||||++|
T Consensus 492 ~~-----~~~~~~v~q~~~~~~~~ltv~e~l~~--~~~~~-----~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaL 559 (986)
T 2iw3_A 492 QE-----ECRTVYVEHDIDGTHSDTSVLDFVFE--SGVGT-----KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLAL 559 (986)
T ss_dssp TT-----TSCEEETTCCCCCCCTTSBHHHHHHT--TCSSC-----HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHH
T ss_pred cc-----ceeEEEEcccccccccCCcHHHHHHH--hhcCH-----HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHH
Confidence 11 12479999986 68889999999976 22332 46788999999995 67899999999999999986
Q ss_pred hhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCC
Q psy7365 198 VKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVP 277 (601)
Q Consensus 198 ~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 277 (601)
||++ +.+
T Consensus 560 ArAL--------------------------------------~~~----------------------------------- 566 (986)
T 2iw3_A 560 ARAV--------------------------------------LRN----------------------------------- 566 (986)
T ss_dssp HHHH--------------------------------------HTT-----------------------------------
T ss_pred HHHH--------------------------------------hcC-----------------------------------
Confidence 5432 233
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccc-cccCccc------
Q psy7365 278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQ-CCGSSVF------ 350 (601)
Q Consensus 278 ~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv-~~G~~~l------ 350 (601)
|++|||||||+|||+.++..++++|++ .|+|+|++|||++++..+||++++|.+|+++ ..|....
T Consensus 567 P~lLLLDEPTs~LD~~~~~~l~~~L~~--------~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~~~~ 638 (986)
T 2iw3_A 567 ADILLLDEPTNHLDTVNVAWLVNYLNT--------CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKCP 638 (986)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHH--------SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHHHCG
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHh--------CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHhhhH
Confidence 589999999999999999999999975 3889999999999999999999999999985 2332100
Q ss_pred ------------c-----cccc-------cc----------cc-------c---------------ccccc---------
Q psy7365 351 ------------L-----KNSF-------AR----------GY-------Y---------------LSLDM--------- 365 (601)
Q Consensus 351 ------------L-----k~~~-------g~----------g~-------~---------------igld~--------- 365 (601)
. .... ++ .| . +|.++
T Consensus 639 ~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLkl 718 (986)
T 2iw3_A 639 AAKAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINV 718 (986)
T ss_dssp GGGGSSSTTTCCCCCCCCCCCCCTTCCSTTSEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhccccccccccccccCCCceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 0 0000 00 00 0 00000
Q ss_pred -----CCc--c----cccccccCCCCccc----CCCCCHHHHHHHhHHh-------------------------------
Q psy7365 366 -----KSA--P----QKSYIGYCPQFDAL----NDRLTPREHLEFYSRV------------------------------- 399 (601)
Q Consensus 366 -----~~~--~----~~~~ig~v~Q~~~l----~~~lTv~E~L~~~~~~------------------------------- 399 (601)
... . ...++||++|++.. ....|+.+++.+....
T Consensus 719 LaGll~P~sG~I~~~~~~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~ 798 (986)
T 2iw3_A 719 LTGELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGT 798 (986)
T ss_dssp HTTSSCCSEEEEEECTTCCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTE
T ss_pred HhCCCCCCceEEEEcCccceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccc
Confidence 000 0 01257888887521 2235666666431100
Q ss_pred ----------------------------------------------------------------------cCCChhHHHH
Q psy7365 400 ----------------------------------------------------------------------RNLPSVLLNT 409 (601)
Q Consensus 400 ----------------------------------------------------------------------~g~~~~~~~~ 409 (601)
.+.......+
T Consensus 799 ~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~ 878 (986)
T 2iw3_A 799 PRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRK 878 (986)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHH
T ss_pred hhhhhhhhhhhhhcccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHH
Confidence 0000011135
Q ss_pred HHHHHHHHcCCCc-c-cccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEc
Q psy7365 410 IVNESLNKFALGH-Y-SDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTS 487 (601)
Q Consensus 410 ~~~~lLe~~~L~~-~-~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsT 487 (601)
+++++|+.+||.+ . .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++ |.|||++|
T Consensus 879 ~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiIS 955 (986)
T 2iw3_A 879 EIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIIT 955 (986)
T ss_dssp HHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEEC
T ss_pred HHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEE
Confidence 6788999999975 3 58899999999999999999999999999999999999999999999988765 67999999
Q ss_pred cChhHHHhhCCEEEEEeCCEEEEecC
Q psy7365 488 HNMEECEALCTKLTIMVNGQFTCLGS 513 (601)
Q Consensus 488 Hdl~e~~~l~drv~iL~~G~iv~~G~ 513 (601)
||++++..+|||+++|++|+++..|+
T Consensus 956 HD~e~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 956 HSAEFTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp SCHHHHTTTCCEEECCBTTBCCC---
T ss_pred CCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999987764
No 9
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=3.2e-46 Score=396.27 Aligned_cols=220 Identities=24% Similarity=0.323 Sum_probs=191.1
Q ss_pred CccchhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccc
Q psy7365 44 SMGAYVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDH 117 (601)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~ 117 (601)
++..+++.++||+|.|++.+....+|+|+||++.+ +||||| ||||| .|+|+|+++|++|+|.++|+
T Consensus 19 ~~~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGa--GKSTL------lr~i~GL~~p~~G~I~i~G~ 90 (366)
T 3tui_C 19 DDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGA--GKSTL------IRCVNLLERPTEGSVLVDGQ 90 (366)
T ss_dssp ----CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTS--SHHHH------HHHHHTSSCCSEEEEEETTE
T ss_pred CCCCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCc--hHHHH------HHHHhcCCCCCceEEEECCE
Confidence 33445677999999997655567899999999988 999999 56654 57999999999999999999
Q ss_pred cCCCc----hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHh
Q psy7365 118 DIRTD----MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQR 193 (601)
Q Consensus 118 ~~~~~----~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~q 193 (601)
++... ....|++||||||++.+|+.+||+||++|+....+.++++.++++.++++.+||.+..++++.+|||||||
T Consensus 91 ~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQ 170 (366)
T 3tui_C 91 ELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQ 170 (366)
T ss_dssp ECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHH
T ss_pred ECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHH
Confidence 98642 12356789999999999999999999999998888888888899999999999999999999999999999
Q ss_pred hhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhh
Q psy7365 194 KLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAM 273 (601)
Q Consensus 194 r~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 273 (601)
||+|||||+ ++
T Consensus 171 RVaIArAL~--------------------------------------~~------------------------------- 181 (366)
T 3tui_C 171 RVAIARALA--------------------------------------SN------------------------------- 181 (366)
T ss_dssp HHHHHHHTT--------------------------------------TC-------------------------------
T ss_pred HHHHHHHHh--------------------------------------cC-------------------------------
Confidence 998655433 33
Q ss_pred ccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365 274 SFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS 348 (601)
Q Consensus 274 ~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~ 348 (601)
|++|||||||+||||.++..++++|++++ +..|+|||++|||++++..+|||+++|.+|+++..|++
T Consensus 182 ----P~lLLlDEPTs~LD~~~~~~i~~lL~~l~----~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~ 248 (366)
T 3tui_C 182 ----PKVLLCDQATSALDPATTRSILELLKDIN----RRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTV 248 (366)
T ss_dssp ----CSEEEEESTTTTSCHHHHHHHHHHHHHHH----HHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBH
T ss_pred ----CCEEEEECCCccCCHHHHHHHHHHHHHHH----HhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 58999999999999999999999999984 23599999999999999999999999999999887754
No 10
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.9e-45 Score=390.05 Aligned_cols=212 Identities=26% Similarity=0.343 Sum_probs=184.9
Q ss_pred hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-
Q psy7365 49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT- 121 (601)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~- 121 (601)
++.++||+|.|++ ..+|+|+||++.+ +||||| ||||| .|+|+|+++|++|+|.++|+++..
T Consensus 4 ~l~i~~ls~~y~~----~~~L~~vsl~i~~Ge~~~llGpsGs--GKSTL------Lr~iaGl~~p~~G~I~i~G~~i~~~ 71 (359)
T 3fvq_A 4 ALHIGHLSKSFQN----TPVLNDISLSLDPGEILFIIGASGC--GKTTL------LRCLAGFEQPDSGEISLSGKTIFSK 71 (359)
T ss_dssp CEEEEEEEEEETT----EEEEEEEEEEECTTCEEEEEESTTS--SHHHH------HHHHHTSSCCSEEEEEETTEEEESS
T ss_pred EEEEEeEEEEECC----EEEEEeeEEEEcCCCEEEEECCCCc--hHHHH------HHHHhcCCCCCCcEEEECCEECccc
Confidence 3558999999964 4599999999988 999999 56654 579999999999999999998731
Q ss_pred --chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchh
Q psy7365 122 --DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVK 199 (601)
Q Consensus 122 --~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~ 199 (601)
.....++.||||||++.+|+++||+||+.|+....+.++++.++++.++++.+||.+..++++.+|||||||||+|||
T Consensus 72 ~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValAr 151 (359)
T 3fvq_A 72 NTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALAR 151 (359)
T ss_dssp SCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHH
T ss_pred ccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHH
Confidence 223346789999999999999999999999988888888888889999999999999999999999999999998654
Q ss_pred hhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCc
Q psy7365 200 VWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAS 279 (601)
Q Consensus 200 ~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 279 (601)
|| +++ |+
T Consensus 152 AL--------------------------------------~~~-----------------------------------P~ 158 (359)
T 3fvq_A 152 AL--------------------------------------APD-----------------------------------PE 158 (359)
T ss_dssp HH--------------------------------------TTC-----------------------------------CS
T ss_pred HH--------------------------------------HcC-----------------------------------CC
Confidence 43 233 58
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcc
Q psy7365 280 TVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV 349 (601)
Q Consensus 280 ~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~ 349 (601)
+|||||||+|||+..+..+++.|+++. +..|+|+|++|||++++..+||||++|.+|+++..|++.
T Consensus 159 lLLLDEPts~LD~~~r~~l~~~l~~~~----~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~ 224 (359)
T 3fvq_A 159 LILLDEPFSALDEQLRRQIREDMIAAL----RANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPH 224 (359)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHH----HHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHH----HhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHH
Confidence 999999999999999999999888774 346999999999999999999999999999999887653
No 11
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=5.1e-45 Score=389.27 Aligned_cols=211 Identities=26% Similarity=0.366 Sum_probs=186.4
Q ss_pred hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCch
Q psy7365 50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDM 123 (601)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~ 123 (601)
+.++||+|.|++ ..+|+|+||++.+ +||||| ||||| .|+|+|+++|++|+|.++|+++....
T Consensus 4 l~~~~l~~~yg~----~~~L~~vsl~i~~Ge~~~llGpsGs--GKSTL------Lr~iaGl~~p~~G~I~i~G~~~~~~~ 71 (381)
T 3rlf_A 4 VQLQNVTKAWGE----VVVSKDINLDIHEGEFVVFVGPSGC--GKSTL------LRMIAGLETITSGDLFIGEKRMNDTP 71 (381)
T ss_dssp EEEEEEEEEETT----EEEEEEEEEEECTTCEEEEECCTTS--SHHHH------HHHHHTSSCCSEEEEEETTEECTTCC
T ss_pred EEEEeEEEEECC----EEEEeeeEEEECCCCEEEEEcCCCc--hHHHH------HHHHHcCCCCCCeEEEECCEECCCCC
Confidence 458999999964 4699999999987 999999 56654 57999999999999999999986432
Q ss_pred HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcc
Q psy7365 124 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFN 203 (601)
Q Consensus 124 ~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~ 203 (601)
. .++.||||||++.+|+++||+||++|+....+.++++.++++.++++.+||.+..++++.+|||||||||+|||||+
T Consensus 72 ~-~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~- 149 (381)
T 3rlf_A 72 P-AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLV- 149 (381)
T ss_dssp G-GGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHH-
T ss_pred H-HHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHH-
Confidence 2 24679999999999999999999999999889998888999999999999999999999999999999998655432
Q ss_pred hhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEE
Q psy7365 204 NKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVIL 283 (601)
Q Consensus 204 ~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liL 283 (601)
.+ |++|||
T Consensus 150 -------------------------------------~~-----------------------------------P~lLLL 157 (381)
T 3rlf_A 150 -------------------------------------AE-----------------------------------PSVFLL 157 (381)
T ss_dssp -------------------------------------HC-----------------------------------CSEEEE
T ss_pred -------------------------------------cC-----------------------------------CCEEEE
Confidence 33 589999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccc
Q psy7365 284 DEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF 350 (601)
Q Consensus 284 DEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~l 350 (601)
||||++||+..+..+++.|+++. +..|+|+|++|||++++..+||||++|.+|+++..|++..
T Consensus 158 DEPts~LD~~~~~~l~~~l~~l~----~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~ 220 (381)
T 3rlf_A 158 DEPLSNLDAALRVQMRIEISRLH----KRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLE 220 (381)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHH----HHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred ECCCcCCCHHHHHHHHHHHHHHH----HhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 99999999999999999999984 2348999999999999999999999999999998886543
No 12
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=8.4e-45 Score=373.07 Aligned_cols=215 Identities=25% Similarity=0.375 Sum_probs=185.3
Q ss_pred chhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCC
Q psy7365 47 AYVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIR 120 (601)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~ 120 (601)
.++..++||++.|++ ...+|+|+||++.+ +||||| ||||| .++|+|+++|++|+|+++|+++.
T Consensus 5 ~~~l~i~~ls~~y~~---~~~~L~~isl~i~~Ge~~~iiGpnGs--GKSTL------l~~l~Gl~~p~~G~I~~~G~~i~ 73 (275)
T 3gfo_A 5 DYILKVEELNYNYSD---GTHALKGINMNIKRGEVTAILGGNGV--GKSTL------FQNFNGILKPSSGRILFDNKPID 73 (275)
T ss_dssp CEEEEEEEEEEECTT---SCEEEEEEEEEEETTSEEEEECCTTS--SHHHH------HHHHTTSSCCSEEEEEETTEECC
T ss_pred CcEEEEEEEEEEECC---CCeEEEeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHHcCCCCCCeEEEECCEECC
Confidence 345679999999853 23599999999988 999999 56655 57999999999999999999985
Q ss_pred C---chHHhcccEEEEccCCC-CCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhh
Q psy7365 121 T---DMTTIRRSLGVCPQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLD 196 (601)
Q Consensus 121 ~---~~~~~~~~ig~v~Q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~ 196 (601)
. .....++.+|||||+|. .++.+||+||+.|+....+.++++.++++.++++.+||.+..++++.+|||||||||+
T Consensus 74 ~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~ 153 (275)
T 3gfo_A 74 YSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVA 153 (275)
T ss_dssp CSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHH
T ss_pred cccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHH
Confidence 2 22346778999999983 5558999999999998888888888889999999999999999999999999999998
Q ss_pred chhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccC
Q psy7365 197 NVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFV 276 (601)
Q Consensus 197 ~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 276 (601)
||||| +++
T Consensus 154 iAraL--------------------------------------~~~---------------------------------- 161 (275)
T 3gfo_A 154 IAGVL--------------------------------------VME---------------------------------- 161 (275)
T ss_dssp HHHHH--------------------------------------TTC----------------------------------
T ss_pred HHHHH--------------------------------------HcC----------------------------------
Confidence 65433 233
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcc
Q psy7365 277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV 349 (601)
Q Consensus 277 ~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~ 349 (601)
|++|||||||+||||.++..++++|+++.. .+|+|||++|||++++..+|||+++|.+|+++..|++.
T Consensus 162 -P~lLlLDEPts~LD~~~~~~i~~~l~~l~~----~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~ 229 (275)
T 3gfo_A 162 -PKVLILDEPTAGLDPMGVSEIMKLLVEMQK----ELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPK 229 (275)
T ss_dssp -CSEEEEECTTTTCCHHHHHHHHHHHHHHHH----HHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHH
T ss_pred -CCEEEEECccccCCHHHHHHHHHHHHHHHh----hCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 589999999999999999999999999831 24899999999999999999999999999999887653
No 13
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=4.9e-44 Score=417.44 Aligned_cols=320 Identities=23% Similarity=0.284 Sum_probs=235.9
Q ss_pred HHHhccCCCCCCeeEEEEccccCCCchHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCCh----------HHHHHH
Q psy7365 97 SRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPK----------DLAQLE 166 (601)
Q Consensus 97 ~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~----------~~~~~~ 166 (601)
+-.|..+.++|.+|+|+++|+++.. |..+++.+++.|.. ..+++. .+. .+
T Consensus 384 C~~C~g~rl~~~~~~V~i~G~~i~~------------------~~~~~v~~~l~~~~-~~~l~~~~~~~~~~~~~~~-~~ 443 (916)
T 3pih_A 384 CSVCGGRRLNREALSVKINGLNIHE------------------FTELSISEELEFLK-NLNLTEREREIVGELLKEI-EK 443 (916)
T ss_dssp CTTTCSCCBCTTGGGEEETTEEHHH------------------HHHSBHHHHHHHHH-SCCCCTTTTTTHHHHHHHH-HH
T ss_pred chhcccccCChHhcCcEECCccHHH------------------hhhCCHHHHHHHHH-hccCcHHHHHHHHhhHHHH-HH
Confidence 4567888899999999999988621 33467777776633 222211 111 23
Q ss_pred HHHHHHHcCCCcc-cCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcc
Q psy7365 167 ISNMIGDLGIPHK-RTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMN 245 (601)
Q Consensus 167 ~~~~l~~~gl~~~-~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~ 245 (601)
..+.|..+||... .++++.+|||||||||+|||+|. .+|
T Consensus 444 ~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~--------------------------------------~~p-- 483 (916)
T 3pih_A 444 RLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIG--------------------------------------SGL-- 483 (916)
T ss_dssp HHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHH--------------------------------------TTC--
T ss_pred HHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHh--------------------------------------hCC--
Confidence 4577889999865 79999999999999998655432 222
Q ss_pred hhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchh
Q psy7365 246 LTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMD 325 (601)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~ 325 (601)
.|.+|||||||+||||..+..++++|+++ +..|.|||+||||++
T Consensus 484 -------------------------------~~~lllLDEPT~gLD~~~~~~l~~~L~~L-----~~~G~TvivVtHd~~ 527 (916)
T 3pih_A 484 -------------------------------TGVIYVLDEPTIGLHPRDTERLIKTLKKL-----RDLGNTVIVVEHDEE 527 (916)
T ss_dssp -------------------------------CSCEEEEECTTTTCCGGGHHHHHHHHHHT-----TTTTCEEEEECCCHH
T ss_pred -------------------------------CCcEEEEECCccCCCHHHHHHHHHHHHHH-----HhcCCEEEEEeCCHH
Confidence 24699999999999999999999999998 346999999999999
Q ss_pred HHHhcCCEEEEe------cCCccccccCcccc------------------------------------------cc----
Q psy7365 326 EADLLGDRIAII------AAGKLQCCGSSVFL------------------------------------------KN---- 353 (601)
Q Consensus 326 ~~~~l~Drv~vL------~~GkIv~~G~~~lL------------------------------------------k~---- 353 (601)
++.. ||++++| .+|+++..|++..+ ++
T Consensus 528 ~~~~-aD~ii~lgpgag~~~G~iv~~G~~~e~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~v~~~~~~~Lk~Vsl~ 606 (916)
T 3pih_A 528 VIRN-ADHIIDIGPGGGTNGGRVVFQGTVDELLKNPDSSLTGEYLSGKRKITVNKTRRLPYASLKIKGVRHNNLKNIDVE 606 (916)
T ss_dssp HHHT-CSEEEEEESSSGGGCSEEEEEECHHHHHHSCTTCHHHHHHHSSSCCCCCSSCCCCSSEEEEEEECSTTCCSEEEE
T ss_pred HHHh-CCEEEEEcCCcccCCCEEEEeechhhhhcCchhcchhhhhhcccccccccccccccceEEEeeeccccccccceE
Confidence 8765 9999999 67888765532100 00
Q ss_pred -----------ccccc--ccc--------------------------c---------cccCC-------c----------
Q psy7365 354 -----------SFARG--YYL--------------------------S---------LDMKS-------A---------- 368 (601)
Q Consensus 354 -----------~~g~g--~~i--------------------------g---------ld~~~-------~---------- 368 (601)
..|.| ..+ + .+... .
T Consensus 607 I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~at~~~~~~~ 686 (916)
T 3pih_A 607 IPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPATYTKVFDE 686 (916)
T ss_dssp EESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHHHHSSHHHH
T ss_pred EcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccccchhhhHHH
Confidence 00000 000 0 00000 0
Q ss_pred ------------------------------ccccccccCCCCcccCC--------------------------------C
Q psy7365 369 ------------------------------PQKSYIGYCPQFDALND--------------------------------R 386 (601)
Q Consensus 369 ------------------------------~~~~~ig~v~Q~~~l~~--------------------------------~ 386 (601)
+..+..|+++++..+++ .
T Consensus 687 ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g~~i~~vl~ 766 (916)
T 3pih_A 687 IRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKGKNISDILD 766 (916)
T ss_dssp HHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTTBCHHHHHS
T ss_pred HHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhccCCHHHHhh
Confidence 00011234444333322 3
Q ss_pred CCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCc-ccccccCcCChHHHHHHHHHHHHhCCC---CEEEEECCCCCCC
Q psy7365 387 LTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTAIALLGNT---PLIFLDEPTSGMD 462 (601)
Q Consensus 387 lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~-~~~~~~~~LSgGqkQRl~lA~AL~~~P---~lLlLDEPTsGLD 462 (601)
+|+.|++.|+... ....++.++|+.+||.. ..++++.+|||||||||+||+||+.+| ++|||||||+|||
T Consensus 767 ~tv~eal~f~~~~------~~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD 840 (916)
T 3pih_A 767 MTVDEALEFFKNI------PSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLH 840 (916)
T ss_dssp SBHHHHHHHTTTC------HHHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCC
T ss_pred CCHHHHHHHHhcc------hhHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCC
Confidence 6788888775421 12345778999999974 468899999999999999999999875 7999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEE------eCCEEEEecCHHHHHHH
Q psy7365 463 PGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIM------VNGQFTCLGSATHLKSK 520 (601)
Q Consensus 463 ~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL------~~G~iv~~G~~~~L~~~ 520 (601)
+.+++.++++|++++++|.|||++|||++++.. ||||++| ++|+|++.|+|+++.+.
T Consensus 841 ~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~-ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~ 903 (916)
T 3pih_A 841 FEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKN-ADHIIDLGPEGGKEGGYIVATGTPEEIAKN 903 (916)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT-CSEEEEEESSSGGGCCEEEEEESHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh-CCEEEEecCCCCCCCCEEEEEcCHHHHHhC
Confidence 999999999999998889999999999999865 9999999 89999999999999754
No 14
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=1.4e-43 Score=411.51 Aligned_cols=295 Identities=22% Similarity=0.306 Sum_probs=225.1
Q ss_pred CCCCCCHHHHHHHhHhhcCCCh----------HHHHHHHHHHHHHcCCCcc-cCCccccCChHHHhhhhchhhhcchhhH
Q psy7365 139 LFDKLTVEEHMWFYSQLKQVPK----------DLAQLEISNMIGDLGIPHK-RTSLANTLSGGMQRKLDNVKVWFNNKAW 207 (601)
Q Consensus 139 ~~~~~tv~e~l~~~~~~~~~~~----------~~~~~~~~~~l~~~gl~~~-~~~~~~~LSgG~~qr~~~~~~~~~~~~~ 207 (601)
.+..+||.|+++| .++.+++. +++.+|+ +.|+.+||... .++.+.+||||||||++||++|.
T Consensus 448 q~~~ltV~e~~~f-~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~----- 520 (972)
T 2r6f_A 448 EVTAMSVTEALAF-FDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIG----- 520 (972)
T ss_dssp HHHTSBHHHHHHH-HHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHT-----
T ss_pred HHhhCCHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHh-----
Confidence 4567999999999 56667776 3455666 56899999865 79999999999999998654322
Q ss_pred HHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCC
Q psy7365 208 IAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPT 287 (601)
Q Consensus 208 ~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPt 287 (601)
.+| .|++|||||||
T Consensus 521 ---------------------------------~~~---------------------------------~~~llILDEPT 534 (972)
T 2r6f_A 521 ---------------------------------SRL---------------------------------TGVLYVLDEPS 534 (972)
T ss_dssp ---------------------------------TCC---------------------------------CSCEEEEECTT
T ss_pred ---------------------------------hCC---------------------------------CCCEEEEeCcc
Confidence 111 15899999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEe------cCCccccccCccccc---------
Q psy7365 288 SGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAII------AAGKLQCCGSSVFLK--------- 352 (601)
Q Consensus 288 sgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL------~~GkIv~~G~~~lLk--------- 352 (601)
+||||...+.++++|+++. ..|.|||+||||++++. .||+|++| .+|+++..|++..+.
T Consensus 535 agLdp~~~~~L~~~L~~Lr-----~~G~TVIvVeHdl~~i~-~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~~~~slt~~ 608 (972)
T 2r6f_A 535 IGLHQRDNDRLIATLKSMR-----DLGNTLIVVEHDEDTML-AADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLTGQ 608 (972)
T ss_dssp TTCCGGGHHHHHHHHHHHH-----TTTCEEEEECCCHHHHH-SCSEEEEECSSSGGGCCSEEEEECTTTTTTCTTCTTHH
T ss_pred cCCCHHHHHHHHHHHHHHH-----hCCCEEEEEecCHHHHH-hCCEEEEeCCCccCCCCEEEEecCHHHHHhhhHHHHHH
Confidence 9999999999999999983 46999999999999875 79999999 578876655321100
Q ss_pred ----------------c--c-----------c-------------------cccc-----c-c-----------------
Q psy7365 353 ----------------N--S-----------F-------------------ARGY-----Y-L----------------- 361 (601)
Q Consensus 353 ----------------~--~-----------~-------------------g~g~-----~-i----------------- 361 (601)
. . + |.|. . .
T Consensus 609 ~l~g~~~~~~~~~~~~~~~~~L~v~~l~~~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~ 688 (972)
T 2r6f_A 609 YLSGKKFIPIPAERRRPDGRWLEVVGAREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGE 688 (972)
T ss_dssp HHHTSSCCCCCSSCCCCCSCEEEEEEECSSSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCS
T ss_pred HhcCCccccCccccccccceEEEEecCcccccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCc
Confidence 0 0 0 0000 0 0
Q ss_pred -----c---------ccc-------CCc------------------ccccccccCCCCcccC------------------
Q psy7365 362 -----S---------LDM-------KSA------------------PQKSYIGYCPQFDALN------------------ 384 (601)
Q Consensus 362 -----g---------ld~-------~~~------------------~~~~~ig~v~Q~~~l~------------------ 384 (601)
| ++. .+. +..+.+||+||...+.
T Consensus 689 ~~~i~G~~~~~~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~e 768 (972)
T 2r6f_A 689 HRDIRGLEHLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIE 768 (972)
T ss_dssp CSEEECGGGCSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEEC
T ss_pred eeeeccccccceEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeee
Confidence 0 000 000 0013367877753321
Q ss_pred ------------------------------------CCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCc-ccccc
Q psy7365 385 ------------------------------------DRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGH-YSDRE 427 (601)
Q Consensus 385 ------------------------------------~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~-~~~~~ 427 (601)
..+|+.|++.|+... + . ..+..++|+.++|.. ..+++
T Consensus 769 m~fl~~v~~~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~---~--~-~~~~~~~L~~~gL~~~~l~~~ 842 (972)
T 2r6f_A 769 MHFLPDVYVPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASI---P--K-IKRKLETLYDVGLGYMKLGQP 842 (972)
T ss_dssp CSSSCCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSC---H--H-HHHHHHHHHHTTCSSSBTTCC
T ss_pred hhccccccccccccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcc---h--h-HHHHHHHHHHcCCCcccccCc
Confidence 035777777765321 1 1 234578999999987 78999
Q ss_pred cCcCChHHHHHHHHHHHHhCCC---CEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEE-
Q psy7365 428 VRTLSGGNKRKLSTAIALLGNT---PLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIM- 503 (601)
Q Consensus 428 ~~~LSgGqkQRl~lA~AL~~~P---~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL- 503 (601)
+.+|||||||||+||++|+.+| ++|||||||+|||+.+++.++++|++++++|.|||++|||++++ .+||||++|
T Consensus 843 ~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i-~~aDrIivL~ 921 (972)
T 2r6f_A 843 ATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVI-KTADYIIDLG 921 (972)
T ss_dssp GGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEEC
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEEc
Confidence 9999999999999999999875 99999999999999999999999999988899999999999998 479999999
Q ss_pred -----eCCEEEEecCHHHHHH
Q psy7365 504 -----VNGQFTCLGSATHLKS 519 (601)
Q Consensus 504 -----~~G~iv~~G~~~~L~~ 519 (601)
++|++++.|+++++.+
T Consensus 922 p~gG~~~G~Iv~~g~~~el~~ 942 (972)
T 2r6f_A 922 PEGGDRGGQIVAVGTPEEVAE 942 (972)
T ss_dssp SSSTTSCCSEEEEESHHHHHT
T ss_pred CCCCCCCCEEEEecCHHHHHh
Confidence 7899999999999875
No 15
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=4.6e-44 Score=379.28 Aligned_cols=213 Identities=23% Similarity=0.370 Sum_probs=185.0
Q ss_pred cchhhhhccccccc-ccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEcccc
Q psy7365 46 GAYVSLFESLSENR-DKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHD 118 (601)
Q Consensus 46 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~ 118 (601)
|.+...+++|+|.| ++ ..+++|+||++.+ +||||| ||||| .|+|+|+++|++|+|.++|++
T Consensus 11 ~~~~l~~~~l~~~y~g~----~~vl~~vsl~i~~Ge~~~llGpnGs--GKSTL------Lr~iaGl~~p~~G~I~i~g~~ 78 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPGG----ARSVRGVSFQIREGEMVGLLGPSGS--GKTTI------LRLIAGLERPTKGDVWIGGKR 78 (355)
T ss_dssp CCEEEEEEEEEECCTTS----TTCEEEEEEEEETTCEEEEECSTTS--SHHHH------HHHHHTSSCCSEEEEEETTEE
T ss_pred CCceEEEEEEEEEEcCC----CEEEeeeEEEECCCCEEEEECCCCC--cHHHH------HHHHhCCCCCCccEEEECCEE
Confidence 33456699999998 43 4599999999988 999999 56654 579999999999999999999
Q ss_pred CCCchHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhch
Q psy7365 119 IRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNV 198 (601)
Q Consensus 119 ~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~ 198 (601)
+.... ..++.+|||||++.+|+++||+||+.|+....+.++++.++++.++++.+||.+..++++.+|||||||||+||
T Consensus 79 i~~~~-~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalA 157 (355)
T 1z47_A 79 VTDLP-PQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALA 157 (355)
T ss_dssp CTTCC-GGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred CCcCC-hhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHH
Confidence 85422 23678999999999999999999999998887888877888999999999999999999999999999999865
Q ss_pred hhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCC
Q psy7365 199 KVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPA 278 (601)
Q Consensus 199 ~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 278 (601)
||| +.+ |
T Consensus 158 rAL--------------------------------------~~~-----------------------------------P 164 (355)
T 1z47_A 158 RAL--------------------------------------APR-----------------------------------P 164 (355)
T ss_dssp HHH--------------------------------------TTC-----------------------------------C
T ss_pred HHH--------------------------------------HcC-----------------------------------C
Confidence 433 233 5
Q ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365 279 STVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS 348 (601)
Q Consensus 279 ~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~ 348 (601)
++|||||||+|||+..+..+++.|+++. +..|+|+|++|||++++..+|||+++|.+|+++..+++
T Consensus 165 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~----~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~ 230 (355)
T 1z47_A 165 QVLLFDEPFAAIDTQIRRELRTFVRQVH----DEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTP 230 (355)
T ss_dssp SEEEEESTTCCSSHHHHHHHHHHHHHHH----HHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 8999999999999999999999999884 22489999999999999999999999999999877654
No 16
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=8.8e-44 Score=357.50 Aligned_cols=212 Identities=20% Similarity=0.271 Sum_probs=177.5
Q ss_pred hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc-h
Q psy7365 51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD-M 123 (601)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~-~ 123 (601)
.++||++.|++.....++|+|+||++.+ +||||| ||||| .++|+|+++|++|+|.++|.++... .
T Consensus 3 ~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGs--GKSTL------l~~l~Gl~~p~~G~I~~~g~~~~~~~~ 74 (235)
T 3tif_A 3 KLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGS--GKSTM------LNIIGCLDKPTEGEVYIDNIKTNDLDD 74 (235)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTS--SHHHH------HHHHTTSSCCSEEEEEETTEECTTCCH
T ss_pred EEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCC--cHHHH------HHHHhcCCCCCceEEEECCEEcccCCH
Confidence 4789999987544346799999999988 999999 56655 5799999999999999999998642 2
Q ss_pred H---H-hcccEEEEccCCCCCCCCCHHHHHHHhHhhc---CCChHHHHHHHHHHHHHcCCCcc-cCCccccCChHHHhhh
Q psy7365 124 T---T-IRRSLGVCPQYNALFDKLTVEEHMWFYSQLK---QVPKDLAQLEISNMIGDLGIPHK-RTSLANTLSGGMQRKL 195 (601)
Q Consensus 124 ~---~-~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LSgG~~qr~ 195 (601)
. . .++.+|||||+|.+|+.+||+||+.|+.... +.+.++..+++.++++.+|+.+. .++++.+||||||||+
T Consensus 75 ~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv 154 (235)
T 3tif_A 75 DELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRV 154 (235)
T ss_dssp HHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHH
T ss_pred HHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHH
Confidence 1 1 2346999999999999999999999977544 45666777889999999999985 5999999999999999
Q ss_pred hchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhcc
Q psy7365 196 DNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSF 275 (601)
Q Consensus 196 ~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 275 (601)
++|||| +++
T Consensus 155 ~iAral--------------------------------------~~~--------------------------------- 163 (235)
T 3tif_A 155 AIARAL--------------------------------------ANN--------------------------------- 163 (235)
T ss_dssp HHHHHH--------------------------------------TTC---------------------------------
T ss_pred HHHHHH--------------------------------------HcC---------------------------------
Confidence 865443 233
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365 276 VPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS 348 (601)
Q Consensus 276 ~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~ 348 (601)
|++|||||||+|||+.++..++++|+++. +..|+|||++|||++.+ .+|||+++|.+|+++..++.
T Consensus 164 --p~llllDEPts~LD~~~~~~i~~~l~~l~----~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~~~~~~ 229 (235)
T 3tif_A 164 --PPIILADQPTWALDSKTGEKIMQLLKKLN----EEDGKTVVVVTHDINVA-RFGERIIYLKDGEVEREEKL 229 (235)
T ss_dssp --CSEEEEESTTTTSCHHHHHHHHHHHHHHH----HHHCCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEEC
T ss_pred --CCEEEEeCCcccCCHHHHHHHHHHHHHHH----HHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEcCh
Confidence 58999999999999999999999999984 22489999999999965 79999999999999876543
No 17
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.4e-43 Score=353.52 Aligned_cols=208 Identities=22% Similarity=0.278 Sum_probs=178.5
Q ss_pred hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc
Q psy7365 49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD 122 (601)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~ 122 (601)
+..++||++.|++ .++++|+||++.+ +||||| ||||| .++|+|+++|++|+|.++|.++...
T Consensus 4 ~l~~~~l~~~y~~----~~~l~~vsl~i~~Ge~~~iiG~nGs--GKSTL------l~~l~Gl~~p~~G~i~~~g~~~~~~ 71 (224)
T 2pcj_A 4 ILRAENIKKVIRG----YEILKGISLSVKKGEFVSIIGASGS--GKSTL------LYILGLLDAPTEGKVFLEGKEVDYT 71 (224)
T ss_dssp EEEEEEEEEEETT----EEEEEEEEEEEETTCEEEEEECTTS--CHHHH------HHHHTTSSCCSEEEEEETTEECCSS
T ss_pred EEEEEeEEEEECC----EeeEeeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHhcCCCCCceEEEECCEECCCC
Confidence 3568999999864 4699999999988 999999 56655 5799999999999999999998542
Q ss_pred -h---HHhc-ccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhc
Q psy7365 123 -M---TTIR-RSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDN 197 (601)
Q Consensus 123 -~---~~~~-~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~ 197 (601)
. ...+ +.+||+||++.+|+++||+||+.|+....+.++++.++++.++++.+||.+..++++.+||||||||+++
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~l 151 (224)
T 2pcj_A 72 NEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAI 151 (224)
T ss_dssp CHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHH
T ss_pred CHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHH
Confidence 1 1233 6799999999999999999999998777777666667789999999999999999999999999999986
Q ss_pred hhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCC
Q psy7365 198 VKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVP 277 (601)
Q Consensus 198 ~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 277 (601)
||||+ ++
T Consensus 152 aral~--------------------------------------~~----------------------------------- 158 (224)
T 2pcj_A 152 ARALA--------------------------------------NE----------------------------------- 158 (224)
T ss_dssp HHHTT--------------------------------------TC-----------------------------------
T ss_pred HHHHH--------------------------------------cC-----------------------------------
Confidence 54332 33
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccC
Q psy7365 278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 347 (601)
Q Consensus 278 ~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~ 347 (601)
|+++||||||+|||+.++..++++|+++. .+|+|||++|||++++ .+||++++|.+|+++..|+
T Consensus 159 p~lllLDEPt~~LD~~~~~~~~~~l~~l~-----~~g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 159 PILLFADEPTGNLDSANTKRVMDIFLKIN-----EGGTSIVMVTHERELA-ELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHH-----HTTCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----HCCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEee
Confidence 58999999999999999999999999883 2489999999999987 8999999999999887664
No 18
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.2e-43 Score=362.26 Aligned_cols=210 Identities=21% Similarity=0.354 Sum_probs=180.5
Q ss_pred hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCC--
Q psy7365 49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIR-- 120 (601)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~-- 120 (601)
+..++||++.|++ ..+++|+||++.+ +||||| ||||| .++|+|+++|++|+|.++|.++.
T Consensus 24 ~l~i~~l~~~y~~----~~vL~~vsl~i~~Gei~~liG~NGs--GKSTL------lk~l~Gl~~p~~G~I~~~g~~i~~~ 91 (263)
T 2olj_A 24 MIDVHQLKKSFGS----LEVLKGINVHIREGEVVVVIGPSGS--GKSTF------LRCLNLLEDFDEGEIIIDGINLKAK 91 (263)
T ss_dssp SEEEEEEEEEETT----EEEEEEEEEEECTTCEEEEECCTTS--SHHHH------HHHHTTSSCCSEEEEEETTEESSST
T ss_pred eEEEEeEEEEECC----EEEEEeeEEEEcCCCEEEEEcCCCC--cHHHH------HHHHHcCCCCCCcEEEECCEECCCc
Confidence 4669999999853 4599999999988 999999 56655 57999999999999999999884
Q ss_pred -CchHHhcccEEEEccCCCCCCCCCHHHHHHHhH-hhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhch
Q psy7365 121 -TDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYS-QLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNV 198 (601)
Q Consensus 121 -~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~ 198 (601)
......++.+|||||++.+|+.+||+||+.|+. ...+.+.++.++++.++++.+||.+..++++.+||||||||+++|
T Consensus 92 ~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lA 171 (263)
T 2olj_A 92 DTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIA 171 (263)
T ss_dssp TCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred cccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHH
Confidence 223345678999999999999999999999965 555666666677899999999999999999999999999999865
Q ss_pred hhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCC
Q psy7365 199 KVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPA 278 (601)
Q Consensus 199 ~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 278 (601)
||| +.+ |
T Consensus 172 raL--------------------------------------~~~-----------------------------------p 178 (263)
T 2olj_A 172 RAL--------------------------------------AME-----------------------------------P 178 (263)
T ss_dssp HHH--------------------------------------TTC-----------------------------------C
T ss_pred HHH--------------------------------------HCC-----------------------------------C
Confidence 433 233 5
Q ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365 279 STVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS 348 (601)
Q Consensus 279 ~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~ 348 (601)
++|||||||+||||.++..++++|+++. .+|+|||++|||++++..+||++++|.+|+++..+++
T Consensus 179 ~lllLDEPts~LD~~~~~~~~~~l~~l~-----~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 243 (263)
T 2olj_A 179 KIMLFDEPTSALDPEMVGEVLSVMKQLA-----NEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKP 243 (263)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHH-----HTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHH-----hCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 8999999999999999999999999883 2489999999999999999999999999999876654
No 19
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=6.4e-44 Score=364.12 Aligned_cols=210 Identities=21% Similarity=0.302 Sum_probs=179.9
Q ss_pred hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-
Q psy7365 49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT- 121 (601)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~- 121 (601)
+..+++|++.|++ .++++|+||++.+ +||||| ||||| .++|+|+++|++|+|.++|.++..
T Consensus 6 ~l~i~~l~~~y~~----~~vl~~vsl~i~~Ge~~~liG~nGs--GKSTL------lk~l~Gl~~p~~G~i~~~g~~~~~~ 73 (262)
T 1b0u_A 6 KLHVIDLHKRYGG----HEVLKGVSLQARAGDVISIIGSSGS--GKSTF------LRCINFLEKPSEGAIIVNGQNINLV 73 (262)
T ss_dssp CEEEEEEEEEETT----EEEEEEEEEEECTTCEEEEECCTTS--SHHHH------HHHHTTSSCCSEEEEEETTEECCEE
T ss_pred eEEEeeEEEEECC----EEEEEeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHhcCCCCCCcEEEECCEEcccc
Confidence 4669999999863 4599999999988 999999 56655 579999999999999999998851
Q ss_pred ----------c---hHHhcccEEEEccCCCCCCCCCHHHHHHHhH-hhcCCChHHHHHHHHHHHHHcCCCcc-cCCcccc
Q psy7365 122 ----------D---MTTIRRSLGVCPQYNALFDKLTVEEHMWFYS-QLKQVPKDLAQLEISNMIGDLGIPHK-RTSLANT 186 (601)
Q Consensus 122 ----------~---~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~~ 186 (601)
. ....++.+|||||++.+|+.+||+||+.|+. ...+.++++.++++.++++.+||.+. .++++.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~ 153 (262)
T 1b0u_A 74 RDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVH 153 (262)
T ss_dssp ECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGG
T ss_pred ccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCccc
Confidence 1 1234678999999999999999999999965 45566666667789999999999998 9999999
Q ss_pred CChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHH
Q psy7365 187 LSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVA 266 (601)
Q Consensus 187 LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a 266 (601)
|||||||||++|||| +++
T Consensus 154 LSgGq~qRv~lAraL--------------------------------------~~~------------------------ 171 (262)
T 1b0u_A 154 LSGGQQQRVSIARAL--------------------------------------AME------------------------ 171 (262)
T ss_dssp SCHHHHHHHHHHHHH--------------------------------------HTC------------------------
T ss_pred CCHHHHHHHHHHHHH--------------------------------------hcC------------------------
Confidence 999999999865432 333
Q ss_pred HHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCcccccc
Q psy7365 267 VTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG 346 (601)
Q Consensus 267 ~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G 346 (601)
|++|||||||+|||+.++..++++|+++. .+|+|||++|||++++..+||++++|.+|+++..+
T Consensus 172 -----------p~lllLDEPts~LD~~~~~~~~~~l~~l~-----~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g 235 (262)
T 1b0u_A 172 -----------PDVLLFDEPTSALDPELVGEVLRIMQQLA-----EEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 235 (262)
T ss_dssp -----------CSEEEEESTTTTSCHHHHHHHHHHHHHHH-----HTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred -----------CCEEEEeCCCccCCHHHHHHHHHHHHHHH-----hCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 58999999999999999999999999883 24899999999999999999999999999998766
Q ss_pred Cc
Q psy7365 347 SS 348 (601)
Q Consensus 347 ~~ 348 (601)
++
T Consensus 236 ~~ 237 (262)
T 1b0u_A 236 DP 237 (262)
T ss_dssp CH
T ss_pred CH
Confidence 54
No 20
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.5e-43 Score=360.26 Aligned_cols=211 Identities=23% Similarity=0.353 Sum_probs=182.8
Q ss_pred hhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC
Q psy7365 48 YVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT 121 (601)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~ 121 (601)
.++.+++|++.|++ ..+++|+||++.+ +||||| ||||| .++|+|+++|++|+|.++|.++..
T Consensus 14 ~~l~i~~l~~~y~~----~~vl~~vsl~i~~Gei~~l~G~NGs--GKSTL------lk~l~Gl~~p~~G~I~~~g~~~~~ 81 (256)
T 1vpl_A 14 GAVVVKDLRKRIGK----KEILKGISFEIEEGEIFGLIGPNGA--GKTTT------LRIISTLIKPSSGIVTVFGKNVVE 81 (256)
T ss_dssp CCEEEEEEEEEETT----EEEEEEEEEEECTTCEEEEECCTTS--SHHHH------HHHHTTSSCCSEEEEEETTEETTT
T ss_pred CeEEEEEEEEEECC----EEEEEeeEEEEcCCcEEEEECCCCC--CHHHH------HHHHhcCCCCCceEEEECCEECCc
Confidence 34568999999853 4699999999988 999999 56655 579999999999999999999865
Q ss_pred chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhh
Q psy7365 122 DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVW 201 (601)
Q Consensus 122 ~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~ 201 (601)
.....++.+||+||++.+|+.+||+||+.|+...++.+.++.++++.++++.+||.+..++++.+||||||||+++||||
T Consensus 82 ~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL 161 (256)
T 1vpl_A 82 EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARAL 161 (256)
T ss_dssp CHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHH
T ss_pred cHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHH
Confidence 44556778999999999999999999999987767777666667889999999999999999999999999999865433
Q ss_pred cchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEE
Q psy7365 202 FNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTV 281 (601)
Q Consensus 202 ~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~l 281 (601)
+++ |++|
T Consensus 162 --------------------------------------~~~-----------------------------------p~ll 168 (256)
T 1vpl_A 162 --------------------------------------MVN-----------------------------------PRLA 168 (256)
T ss_dssp --------------------------------------TTC-----------------------------------CSEE
T ss_pred --------------------------------------HcC-----------------------------------CCEE
Confidence 233 5899
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS 348 (601)
Q Consensus 282 iLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~ 348 (601)
||||||+|||+.++..++++|+++. .+|+|||++|||++++..+||++++|.+|+++..+++
T Consensus 169 lLDEPts~LD~~~~~~l~~~l~~l~-----~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 230 (256)
T 1vpl_A 169 ILDEPTSGLDVLNAREVRKILKQAS-----QEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTV 230 (256)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHH-----HTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEH
T ss_pred EEeCCccccCHHHHHHHHHHHHHHH-----hCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCH
Confidence 9999999999999999999999873 3589999999999999999999999999998876643
No 21
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.3e-43 Score=376.84 Aligned_cols=210 Identities=25% Similarity=0.354 Sum_probs=183.1
Q ss_pred hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCch
Q psy7365 50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDM 123 (601)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~ 123 (601)
..++||++.|++ ..+++|+||++.+ +||||| ||||| .|+|+|+++|++|+|.++|+++....
T Consensus 4 l~~~~l~~~y~~----~~vl~~vsl~i~~Ge~~~llGpnGs--GKSTL------Lr~iaGl~~p~~G~I~i~g~~i~~~~ 71 (362)
T 2it1_A 4 IKLENIVKKFGN----FTALNNINLKIKDGEFMALLGPSGS--GKSTL------LYTIAGIYKPTSGKIYFDEKDVTELP 71 (362)
T ss_dssp EEEEEEEEESSS----SEEEEEEEEEECTTCEEEEECCTTS--SHHHH------HHHHHTSSCCSEEEEEETTEECTTSC
T ss_pred EEEEeEEEEECC----EEEEEeeEEEECCCCEEEEECCCCc--hHHHH------HHHHhcCCCCCceEEEECCEECCcCC
Confidence 458999999854 4599999999987 999999 56654 57999999999999999999985422
Q ss_pred HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcc
Q psy7365 124 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFN 203 (601)
Q Consensus 124 ~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~ 203 (601)
. .++.+|||||++.+|+++||+||+.|+....+.++++.++++.++++.+||.+..++++.+|||||||||++||||
T Consensus 72 ~-~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL-- 148 (362)
T 2it1_A 72 P-KDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARAL-- 148 (362)
T ss_dssp G-GGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHH--
T ss_pred H-hHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHH--
Confidence 2 2568999999999999999999999998877888777788999999999999999999999999999999865433
Q ss_pred hhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEE
Q psy7365 204 NKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVIL 283 (601)
Q Consensus 204 ~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liL 283 (601)
+.+ |++|||
T Consensus 149 ------------------------------------~~~-----------------------------------P~lLLL 157 (362)
T 2it1_A 149 ------------------------------------VKE-----------------------------------PEVLLL 157 (362)
T ss_dssp ------------------------------------TTC-----------------------------------CSEEEE
T ss_pred ------------------------------------HcC-----------------------------------CCEEEE
Confidence 333 589999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcc
Q psy7365 284 DEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV 349 (601)
Q Consensus 284 DEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~ 349 (601)
||||+|||+..+..+++.|+++. +..|+|+|++|||++++..+|||+++|.+|+++..|++.
T Consensus 158 DEP~s~LD~~~r~~l~~~l~~l~----~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~ 219 (362)
T 2it1_A 158 DEPLSNLDALLRLEVRAELKRLQ----KELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPD 219 (362)
T ss_dssp ESGGGGSCHHHHHHHHHHHHHHH----HHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHH
T ss_pred ECccccCCHHHHHHHHHHHHHHH----HhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999984 224899999999999999999999999999998777543
No 22
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=9.2e-44 Score=377.67 Aligned_cols=210 Identities=26% Similarity=0.314 Sum_probs=181.9
Q ss_pred hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCch
Q psy7365 50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDM 123 (601)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~ 123 (601)
..+++|+|.|++ ..+++|+||++.+ +||||| ||||| .|+|+|+++|++|+|.++|+++....
T Consensus 4 l~~~~l~~~y~~----~~vl~~vsl~i~~Ge~~~llGpnGs--GKSTL------Lr~iaGl~~p~~G~I~i~g~~i~~~~ 71 (359)
T 2yyz_A 4 IRVVNLKKYFGK----VKAVDGVSFEVKDGEFVALLGPSGC--GKTTT------LLMLAGIYKPTSGEIYFDDVLVNDIP 71 (359)
T ss_dssp EEEEEEEEEETT----EEEEEEEEEEECTTCEEEEECSTTS--SHHHH------HHHHHTSSCCSEEEEEETTEECTTSC
T ss_pred EEEEEEEEEECC----EEEEeeeEEEEcCCCEEEEEcCCCc--hHHHH------HHHHHCCCCCCccEEEECCEECCCCC
Confidence 458999999964 4599999999987 999999 56654 57999999999999999999985422
Q ss_pred HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcc
Q psy7365 124 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFN 203 (601)
Q Consensus 124 ~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~ 203 (601)
. .++.+|||||++.+|+++||+||+.|+....+.++++.++++.++++.+||.+..++++.+|||||||||++||||
T Consensus 72 ~-~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL-- 148 (359)
T 2yyz_A 72 P-KYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARAL-- 148 (359)
T ss_dssp G-GGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHH--
T ss_pred h-hhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH--
Confidence 2 3568999999999999999999999988777776666677899999999999999999999999999999865433
Q ss_pred hhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEE
Q psy7365 204 NKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVIL 283 (601)
Q Consensus 204 ~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liL 283 (601)
+.+ |++|||
T Consensus 149 ------------------------------------~~~-----------------------------------P~lLLL 157 (359)
T 2yyz_A 149 ------------------------------------VKQ-----------------------------------PKVLLF 157 (359)
T ss_dssp ------------------------------------TTC-----------------------------------CSEEEE
T ss_pred ------------------------------------HcC-----------------------------------CCEEEE
Confidence 233 589999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcc
Q psy7365 284 DEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV 349 (601)
Q Consensus 284 DEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~ 349 (601)
||||+|||+..+..+++.|+++. +..|+|+|++|||++++..+|||+++|.+|+++..|++.
T Consensus 158 DEP~s~LD~~~r~~l~~~l~~l~----~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~ 219 (359)
T 2yyz_A 158 DEPLSNLDANLRMIMRAEIKHLQ----QELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPD 219 (359)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHH----HHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHH
T ss_pred ECCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999884 234899999999999999999999999999998877653
No 23
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.9e-43 Score=377.16 Aligned_cols=211 Identities=27% Similarity=0.350 Sum_probs=183.1
Q ss_pred hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc-
Q psy7365 50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD- 122 (601)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~- 122 (601)
..++||+|.|++ ..+|+|+||++.+ +||||| ||||| .|+|+|+++|++|+|.++|+++...
T Consensus 4 l~~~~l~~~y~~----~~vl~~vsl~i~~Ge~~~llGpnGs--GKSTL------Lr~iaGl~~p~~G~I~i~g~~~~~~~ 71 (372)
T 1g29_1 4 VRLVDVWKVFGE----VTAVREMSLEVKDGEFMILLGPSGC--GKTTT------LRMIAGLEEPSRGQIYIGDKLVADPE 71 (372)
T ss_dssp EEEEEEEEEETT----EEEEEEEEEEEETTCEEEEECSTTS--SHHHH------HHHHHTSSCCSEEEEEETTEEEEEGG
T ss_pred EEEEeEEEEECC----EEEEeeeEEEEcCCCEEEEECCCCc--HHHHH------HHHHHcCCCCCccEEEECCEECcccc
Confidence 458999999864 4599999999988 999999 56654 5799999999999999999987430
Q ss_pred ----hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhch
Q psy7365 123 ----MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNV 198 (601)
Q Consensus 123 ----~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~ 198 (601)
....++.+|||||++.+|+++||+||+.|+....+.++++.++++.++++.+||.+..++++.+|||||||||++|
T Consensus 72 ~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalA 151 (372)
T 1g29_1 72 KGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALG 151 (372)
T ss_dssp GTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHH
T ss_pred ccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHH
Confidence 1123568999999999999999999999998888888887888999999999999999999999999999999865
Q ss_pred hhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCC
Q psy7365 199 KVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPA 278 (601)
Q Consensus 199 ~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 278 (601)
||| +.+ |
T Consensus 152 rAL--------------------------------------~~~-----------------------------------P 158 (372)
T 1g29_1 152 RAI--------------------------------------VRK-----------------------------------P 158 (372)
T ss_dssp HHH--------------------------------------HTC-----------------------------------C
T ss_pred HHH--------------------------------------hcC-----------------------------------C
Confidence 433 333 5
Q ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcc
Q psy7365 279 STVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV 349 (601)
Q Consensus 279 ~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~ 349 (601)
++|||||||++||+..+..+++.|+++. +..|+|+|++|||++++..+|||+++|.+|+++..|++.
T Consensus 159 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~----~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~ 225 (372)
T 1g29_1 159 QVFLMDEPLSNLDAKLRVRMRAELKKLQ----RQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPD 225 (372)
T ss_dssp SEEEEECTTTTSCHHHHHHHHHHHHHHH----HHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHH
T ss_pred CEEEECCCCccCCHHHHHHHHHHHHHHH----HhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHH
Confidence 8999999999999999999999999884 234899999999999999999999999999998877653
No 24
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.5e-43 Score=377.70 Aligned_cols=211 Identities=26% Similarity=0.321 Sum_probs=176.1
Q ss_pred hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc
Q psy7365 49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD 122 (601)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~ 122 (601)
...+++|+|.|++ ..+++|+||++.+ +||||| ||||| .|+|+|+++|++|+|.++|+++...
T Consensus 11 ~l~~~~l~~~y~~----~~vl~~vsl~i~~Ge~~~llGpnGs--GKSTL------Lr~iaGl~~p~~G~I~i~g~~i~~~ 78 (372)
T 1v43_A 11 EVKLENLTKRFGN----FTAVNKLNLTIKDGEFLVLLGPSGC--GKTTT------LRMIAGLEEPTEGRIYFGDRDVTYL 78 (372)
T ss_dssp CEEEEEEEEEETT----EEEEEEEEEEECTTCEEEEECCTTS--SHHHH------HHHHHTSSCCSEEEEEETTEECTTS
T ss_pred eEEEEEEEEEECC----EEEEeeeEEEECCCCEEEEECCCCC--hHHHH------HHHHHcCCCCCceEEEECCEECCCC
Confidence 3569999999964 4599999999987 999999 56654 5799999999999999999998542
Q ss_pred hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhc
Q psy7365 123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWF 202 (601)
Q Consensus 123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~ 202 (601)
.. .++.+|||||++.+|+++||+||+.|+...++.++++.++++.++++.+||.+..++++.+|||||||||++||||
T Consensus 79 ~~-~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL- 156 (372)
T 1v43_A 79 PP-KDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAI- 156 (372)
T ss_dssp CG-GGGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHH-
T ss_pred Ch-hhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHH-
Confidence 22 2568999999999999999999999988777788777788999999999999999999999999999999865433
Q ss_pred chhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEE
Q psy7365 203 NNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVI 282 (601)
Q Consensus 203 ~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~li 282 (601)
+.+ |++||
T Consensus 157 -------------------------------------~~~-----------------------------------P~lLL 164 (372)
T 1v43_A 157 -------------------------------------VVE-----------------------------------PDVLL 164 (372)
T ss_dssp -------------------------------------TTC-----------------------------------CSEEE
T ss_pred -------------------------------------hcC-----------------------------------CCEEE
Confidence 233 58999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcc
Q psy7365 283 LDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV 349 (601)
Q Consensus 283 LDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~ 349 (601)
|||||++||+..+..+++.|+++. +..|+|+|++|||++++..+|||+++|.+|+++..|++.
T Consensus 165 LDEP~s~LD~~~r~~l~~~l~~l~----~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~ 227 (372)
T 1v43_A 165 MDEPLSNLDAKLRVAMRAEIKKLQ----QKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPT 227 (372)
T ss_dssp EESTTTTSCHHHHHHHHHHHHHHH----HHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHH
T ss_pred EcCCCccCCHHHHHHHHHHHHHHH----HhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999884 224899999999999999999999999999998777553
No 25
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1e-43 Score=376.95 Aligned_cols=210 Identities=24% Similarity=0.350 Sum_probs=182.0
Q ss_pred hhhcccccccccCCCccc--eeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC
Q psy7365 50 SLFESLSENRDKLGIDSY--GISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT 121 (601)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~ 121 (601)
..+++|+|.|++ .. +++|+||++.+ +||||| ||||| .|+|+|+++|++|+|.++|+++..
T Consensus 4 l~i~~l~~~y~~----~~~~vl~~vsl~i~~Ge~~~llGpnGs--GKSTL------Lr~iaGl~~p~~G~I~i~g~~i~~ 71 (353)
T 1oxx_K 4 IIVKNVSKVFKK----GKVVALDNVNINIENGERFGILGPSGA--GKTTF------MRIIAGLDVPSTGELYFDDRLVAS 71 (353)
T ss_dssp EEEEEEEEEEGG----GTEEEEEEEEEEECTTCEEEEECSCHH--HHHHH------HHHHHTSSCCSEEEEEETTEEEEE
T ss_pred EEEEeEEEEECC----EeeeeEeceEEEECCCCEEEEECCCCC--cHHHH------HHHHhCCCCCCceEEEECCEECcc
Confidence 458999999864 45 99999999987 999999 56554 579999999999999999998743
Q ss_pred c----hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhc
Q psy7365 122 D----MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDN 197 (601)
Q Consensus 122 ~----~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~ 197 (601)
. ....++.+|||||++.+|+++||+||+.|+...++.++++.++++.++++.+||.+..++++.+|||||||||++
T Consensus 72 ~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRval 151 (353)
T 1oxx_K 72 NGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVAL 151 (353)
T ss_dssp TTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHH
T ss_pred cccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHH
Confidence 1 223467899999999999999999999999877778877778899999999999999999999999999999986
Q ss_pred hhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCC
Q psy7365 198 VKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVP 277 (601)
Q Consensus 198 ~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 277 (601)
|||| +.+
T Consensus 152 AraL--------------------------------------~~~----------------------------------- 158 (353)
T 1oxx_K 152 ARAL--------------------------------------VKD----------------------------------- 158 (353)
T ss_dssp HHHH--------------------------------------TTC-----------------------------------
T ss_pred HHHH--------------------------------------HhC-----------------------------------
Confidence 5433 233
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365 278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS 348 (601)
Q Consensus 278 ~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~ 348 (601)
|++|||||||+|||+..+..+++.|+++. +..|+|+|++|||++++..+|||+++|.+|+++..+++
T Consensus 159 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~----~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~ 225 (353)
T 1oxx_K 159 PSLLLLDEPFSNLDARMRDSARALVKEVQ----SRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKP 225 (353)
T ss_dssp CSEEEEESTTTTSCGGGHHHHHHHHHHHH----HHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 58999999999999999999999999884 23489999999999999999999999999999876654
No 26
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=5.9e-42 Score=399.11 Aligned_cols=299 Identities=22% Similarity=0.286 Sum_probs=225.6
Q ss_pred CCCCCCCCCHHHHHHHhHhhcCCCh----------HHHHHHHHHHHHHcCCCcc-cCCccccCChHHHhhhhchhhhcch
Q psy7365 136 YNALFDKLTVEEHMWFYSQLKQVPK----------DLAQLEISNMIGDLGIPHK-RTSLANTLSGGMQRKLDNVKVWFNN 204 (601)
Q Consensus 136 ~~~~~~~~tv~e~l~~~~~~~~~~~----------~~~~~~~~~~l~~~gl~~~-~~~~~~~LSgG~~qr~~~~~~~~~~ 204 (601)
+...|..+||.|+++| .++.+++. +++.+|+ +.|+.+||... .++.+.+||||||||++||++|.
T Consensus 462 ~i~q~~~ltV~e~l~f-~enl~l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~-- 537 (993)
T 2ygr_A 462 SIAEVCELSIADCADF-LNALTLGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIG-- 537 (993)
T ss_dssp GGGCSSHHHHHHHHHT-TTTTTSCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHT--
T ss_pred cHHHHhhCCHHHHHHH-HHhcCCCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCCCcccCCHHHHHHHHHHHHHh--
Confidence 3356778999999999 67777776 4555665 46899999865 89999999999999998544322
Q ss_pred hhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEe
Q psy7365 205 KAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILD 284 (601)
Q Consensus 205 ~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLD 284 (601)
.+| .|++||||
T Consensus 538 ------------------------------------~~~---------------------------------~~~llILD 548 (993)
T 2ygr_A 538 ------------------------------------SGL---------------------------------VGVLYVLD 548 (993)
T ss_dssp ------------------------------------TCC---------------------------------CSCEEEEE
T ss_pred ------------------------------------hCC---------------------------------CCcEEEEe
Confidence 111 15899999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEe------cCCccccccCcccc-------
Q psy7365 285 EPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAII------AAGKLQCCGSSVFL------- 351 (601)
Q Consensus 285 EPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL------~~GkIv~~G~~~lL------- 351 (601)
|||+||||..++.|+++|++++ ..|.|||+||||++++. .||+|++| .+|+++..|++..+
T Consensus 549 EPTagLdp~~~~~L~~~L~~Lr-----~~G~TVIvVeHdl~~i~-~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~~~~~l 622 (993)
T 2ygr_A 549 EPSIGLHQRDNRRLIETLTRLR-----DLGNTLIVVEHDEDTIE-HADWIVDIGPGAGEHGGRIVHSGPYDELLRNKDSI 622 (993)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHH-----HTTCEEEEECCCHHHHH-TCSEEEEECSSSGGGCCSCCEEECHHHHHHCTTCH
T ss_pred CcccCCCHHHHHHHHHHHHHHH-----HcCCEEEEECCCHHHHH-hCCEEEEecCccccCCCEEEEeeCHHHhhhhhHHH
Confidence 9999999999999999999983 46999999999999865 79999999 46777655421000
Q ss_pred ----------------c--cc--------------c-------------------cccc-----c-c-------------
Q psy7365 352 ----------------K--NS--------------F-------------------ARGY-----Y-L------------- 361 (601)
Q Consensus 352 ----------------k--~~--------------~-------------------g~g~-----~-i------------- 361 (601)
. .. + |.|. . +
T Consensus 623 t~~~l~g~~~~~~~~~~~~~~~~~~L~v~~l~~~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~ 702 (993)
T 2ygr_A 623 TGAYLSGRESIEIPAIRRSVDPRRQLTVVGAREHNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQ 702 (993)
T ss_dssp HHHHHHTSSCCCCCSSCCCCCSSSEEEEEEECSTTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCC
T ss_pred HHHHhccCccccCccccccCCCCceEEEecCccccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcC
Confidence 0 00 0 0000 0 0
Q ss_pred ---------c---------cccCC-------c------------------ccccccccCCCCcccC--------------
Q psy7365 362 ---------S---------LDMKS-------A------------------PQKSYIGYCPQFDALN-------------- 384 (601)
Q Consensus 362 ---------g---------ld~~~-------~------------------~~~~~ig~v~Q~~~l~-------------- 384 (601)
+ ++... . +..+..||+||...+.
T Consensus 703 ~~G~~~~i~G~~~~~~~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~ 782 (993)
T 2ygr_A 703 VPGRHTRVTGLDYLDKLVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGT 782 (993)
T ss_dssp CCCSEEEECCCTTCSEEECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSE
T ss_pred CCCceeeecCccccceEEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccc
Confidence 0 00000 0 0012357777643221
Q ss_pred --------C--------------------------------CCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCc-c
Q psy7365 385 --------D--------------------------------RLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGH-Y 423 (601)
Q Consensus 385 --------~--------------------------------~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~-~ 423 (601)
+ .+|+.|++.|+... + . ..+..++|+.++|.. .
T Consensus 783 ~~~e~~fl~~v~~~ce~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~~---~--~-~~~~~~~L~~lgL~~~~ 856 (993)
T 2ygr_A 783 IKIEMNFLPDVYVPCEVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEPI---A--G-VHRYLRTLVDVGLGYVR 856 (993)
T ss_dssp EEECCTTSCCEEEECTTTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTTC---H--H-HHHHHHHHHHTTGGGSB
T ss_pred eeehhhccccceeeehhccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhcc---h--H-HHHHHHHHHHcCCCccc
Confidence 0 25677777664321 1 1 234578999999986 6
Q ss_pred cccccCcCChHHHHHHHHHHHHhCCC---CEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEE
Q psy7365 424 SDREVRTLSGGNKRKLSTAIALLGNT---PLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKL 500 (601)
Q Consensus 424 ~~~~~~~LSgGqkQRl~lA~AL~~~P---~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv 500 (601)
.++++.+|||||||||+||++|+.+| ++|||||||+|||+.+++.++++|++++++|.|||++|||++++ .+||||
T Consensus 857 l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i-~~aDrI 935 (993)
T 2ygr_A 857 LGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVI-KTSDWI 935 (993)
T ss_dssp TTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEE
T ss_pred ccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEE
Confidence 89999999999999999999999875 99999999999999999999999999988899999999999998 579999
Q ss_pred EEE------eCCEEEEecCHHHHHHH
Q psy7365 501 TIM------VNGQFTCLGSATHLKSK 520 (601)
Q Consensus 501 ~iL------~~G~iv~~G~~~~L~~~ 520 (601)
++| ++|++++.|+++++.+.
T Consensus 936 ivL~p~gg~~~G~Iv~~G~~~el~~~ 961 (993)
T 2ygr_A 936 IDLGPEGGAGGGTVVAQGTPEDVAAV 961 (993)
T ss_dssp EEEESSSTTSCSEEEEEECHHHHHHC
T ss_pred EEECCCcCCCCCEEEEecCHHHHHhC
Confidence 999 68999999999998753
No 27
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=2.5e-43 Score=358.70 Aligned_cols=210 Identities=18% Similarity=0.268 Sum_probs=178.6
Q ss_pred hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc
Q psy7365 49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD 122 (601)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~ 122 (601)
+..++||++.|++ ..+++|+||++.+ +||||| ||||| .++|+|+++|++|+|.++|.++...
T Consensus 7 ~l~i~~l~~~y~~----~~vl~~vsl~i~~Ge~~~liG~nGs--GKSTL------lk~l~Gl~~p~~G~i~~~g~~~~~~ 74 (257)
T 1g6h_A 7 ILRTENIVKYFGE----FKALDGVSISVNKGDVTLIIGPNGS--GKSTL------INVITGFLKADEGRVYFENKDITNK 74 (257)
T ss_dssp EEEEEEEEEEETT----EEEEEEECCEEETTCEEEEECSTTS--SHHHH------HHHHTTSSCCSEEEEEETTEECTTC
T ss_pred EEEEeeeEEEECC----EeeEeeeEEEEeCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCcEEEECCEECCCC
Confidence 4569999999864 4599999999988 999999 56665 5799999999999999999998542
Q ss_pred --hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhh--cC-----------CChHHHHHHHHHHHHHcCCCcccCCccccC
Q psy7365 123 --MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQL--KQ-----------VPKDLAQLEISNMIGDLGIPHKRTSLANTL 187 (601)
Q Consensus 123 --~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~--~~-----------~~~~~~~~~~~~~l~~~gl~~~~~~~~~~L 187 (601)
....++.+||+||++.+|+.+||.||+.|+... .+ .++.+.++++.++++.+||.+..++++.+|
T Consensus 75 ~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 154 (257)
T 1g6h_A 75 EPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGEL 154 (257)
T ss_dssp CHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGS
T ss_pred CHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhC
Confidence 233466899999999999999999999987644 23 344555678899999999999999999999
Q ss_pred ChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHH
Q psy7365 188 SGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAV 267 (601)
Q Consensus 188 SgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~ 267 (601)
||||||||++|||| +++
T Consensus 155 SgGqkQrv~iAraL--------------------------------------~~~------------------------- 171 (257)
T 1g6h_A 155 SGGQMKLVEIGRAL--------------------------------------MTN------------------------- 171 (257)
T ss_dssp CHHHHHHHHHHHHH--------------------------------------HTC-------------------------
T ss_pred CHHHHHHHHHHHHH--------------------------------------HcC-------------------------
Confidence 99999999865433 233
Q ss_pred HHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccC
Q psy7365 268 TVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 347 (601)
Q Consensus 268 ~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~ 347 (601)
|++|||||||+|||+.++..++++|+++. .+|+|||++|||++++..+||++++|.+|+++..+.
T Consensus 172 ----------p~lllLDEPts~LD~~~~~~l~~~l~~l~-----~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~ 236 (257)
T 1g6h_A 172 ----------PKMIVMDEPIAGVAPGLAHDIFNHVLELK-----AKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236 (257)
T ss_dssp ----------CSEEEEESTTTTCCHHHHHHHHHHHHHHH-----HTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEE
T ss_pred ----------CCEEEEeCCccCCCHHHHHHHHHHHHHHH-----HCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeC
Confidence 58999999999999999999999999883 348999999999999999999999999999987664
Q ss_pred c
Q psy7365 348 S 348 (601)
Q Consensus 348 ~ 348 (601)
+
T Consensus 237 ~ 237 (257)
T 1g6h_A 237 G 237 (257)
T ss_dssp S
T ss_pred H
Confidence 4
No 28
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=4.3e-43 Score=358.80 Aligned_cols=217 Identities=24% Similarity=0.307 Sum_probs=181.2
Q ss_pred hhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC
Q psy7365 48 YVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT 121 (601)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~ 121 (601)
.+..+++|++.|++ .++|+|+||++.+ +||||| ||||| .++|+|+++|++|+|.++|+++..
T Consensus 10 ~~l~~~~l~~~~~~----~~vL~~vsl~i~~Ge~~~liG~nGs--GKSTL------l~~l~Gl~~p~~G~I~~~g~~~~~ 77 (266)
T 4g1u_C 10 ALLEASHLHYHVQQ----QALINDVSLHIASGEMVAIIGPNGA--GKSTL------LRLLTGYLSPSHGECHLLGQNLNS 77 (266)
T ss_dssp CEEEEEEEEEEETT----EEEEEEEEEEEETTCEEEEECCTTS--CHHHH------HHHHTSSSCCSSCEEEETTEETTT
T ss_pred ceEEEEeEEEEeCC----eeEEEeeEEEEcCCCEEEEECCCCC--cHHHH------HHHHhcCCCCCCcEEEECCEECCc
Confidence 45669999999864 4699999999988 999999 56655 579999999999999999999864
Q ss_pred -chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhh
Q psy7365 122 -DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKV 200 (601)
Q Consensus 122 -~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~ 200 (601)
.....++.+||+||++.+++.+||+||+.|+...+. ..+.++++.++++.+|+.+..++++.+||||||||++||||
T Consensus 78 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAra 155 (266)
T 4g1u_C 78 WQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYG--GSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARV 155 (266)
T ss_dssp SCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSC--STTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHH
T ss_pred CCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcC--cHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHH
Confidence 344556789999999999889999999999876542 33456778999999999999999999999999999986554
Q ss_pred hcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcE
Q psy7365 201 WFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAST 280 (601)
Q Consensus 201 ~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 280 (601)
|++- . | .-..|++
T Consensus 156 L~~~------------------------------------~-~------------------------------~~~~p~l 168 (266)
T 4g1u_C 156 LAQL------------------------------------W-Q------------------------------PQPTPRW 168 (266)
T ss_dssp HHHT------------------------------------C-C------------------------------SSCCCEE
T ss_pred Hhcc------------------------------------c-c------------------------------cCCCCCE
Confidence 3320 0 0 0002689
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcc
Q psy7365 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV 349 (601)
Q Consensus 281 liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~ 349 (601)
|||||||+||||.++..++++|+++. +..|+|||++|||++++..+|||+++|.+|+++..+++.
T Consensus 169 LllDEPts~LD~~~~~~i~~~l~~l~----~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~ 233 (266)
T 4g1u_C 169 LFLDEPTSALDLYHQQHTLRLLRQLT----RQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPE 233 (266)
T ss_dssp EEECCCCSSCCHHHHHHHHHHHHHHH----HHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHH
T ss_pred EEEeCccccCCHHHHHHHHHHHHHHH----HcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999984 234689999999999999999999999999999887654
No 29
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=7.3e-43 Score=369.50 Aligned_cols=204 Identities=26% Similarity=0.396 Sum_probs=176.8
Q ss_pred hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchH
Q psy7365 51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMT 124 (601)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~ 124 (601)
.++||+|.|++ . +++|+||++.+ +||||| ||||| .|+|+|+++|++|+|.++|+++....
T Consensus 3 ~~~~l~~~y~~----~-~l~~vsl~i~~Ge~~~llGpnGs--GKSTL------Lr~iaGl~~p~~G~I~~~g~~i~~~~- 68 (348)
T 3d31_A 3 EIESLSRKWKN----F-SLDNLSLKVESGEYFVILGPTGA--GKTLF------LELIAGFHVPDSGRILLDGKDVTDLS- 68 (348)
T ss_dssp EEEEEEEECSS----C-EEEEEEEEECTTCEEEEECCCTH--HHHHH------HHHHHTSSCCSEEEEEETTEECTTSC-
T ss_pred EEEEEEEEECC----E-EEeeeEEEEcCCCEEEEECCCCc--cHHHH------HHHHHcCCCCCCcEEEECCEECCCCc-
Confidence 47899999853 4 99999999988 999999 55554 57999999999999999999986422
Q ss_pred HhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcch
Q psy7365 125 TIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNN 204 (601)
Q Consensus 125 ~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~ 204 (601)
..++.+|||||++.+|+++||+||+.|+...++.+++ +++.++++.+||++..++++.+|||||||||++||||
T Consensus 69 ~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~---~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL--- 142 (348)
T 3d31_A 69 PEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARAL--- 142 (348)
T ss_dssp HHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHT---
T ss_pred hhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHH---HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH---
Confidence 2356899999999999999999999998877666554 6789999999999999999999999999999865443
Q ss_pred hhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEe
Q psy7365 205 KAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILD 284 (601)
Q Consensus 205 ~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLD 284 (601)
+.+ |++||||
T Consensus 143 -----------------------------------~~~-----------------------------------P~lLLLD 152 (348)
T 3d31_A 143 -----------------------------------VTN-----------------------------------PKILLLD 152 (348)
T ss_dssp -----------------------------------TSC-----------------------------------CSEEEEE
T ss_pred -----------------------------------HcC-----------------------------------CCEEEEE
Confidence 233 5899999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365 285 EPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS 348 (601)
Q Consensus 285 EPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~ 348 (601)
|||+|||+..+..+++.|+++. +..|+|+|++|||++++..+|||+++|.+|+++..+++
T Consensus 153 EP~s~LD~~~~~~l~~~l~~l~----~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~ 212 (348)
T 3d31_A 153 EPLSALDPRTQENAREMLSVLH----KKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKP 212 (348)
T ss_dssp SSSTTSCHHHHHHHHHHHHHHH----HHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECH
T ss_pred CccccCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999984 23589999999999999999999999999999877654
No 30
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-42 Score=350.65 Aligned_cols=209 Identities=21% Similarity=0.299 Sum_probs=175.9
Q ss_pred hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc
Q psy7365 49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD 122 (601)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~ 122 (601)
+..+++|++.|++ .++++|+||++.+ +||||| ||||| .++|+|+++|++|+|.++|+++...
T Consensus 6 ~l~~~~l~~~y~~----~~vl~~vsl~i~~Ge~~~l~G~nGs--GKSTL------l~~l~Gl~~p~~G~i~~~g~~~~~~ 73 (240)
T 1ji0_A 6 VLEVQSLHVYYGA----IHAIKGIDLKVPRGQIVTLIGANGA--GKTTT------LSAIAGLVRAQKGKIIFNGQDITNK 73 (240)
T ss_dssp EEEEEEEEEEETT----EEEEEEEEEEEETTCEEEEECSTTS--SHHHH------HHHHTTSSCCSEEEEEETTEECTTC
T ss_pred eEEEEeEEEEECC----eeEEeeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCceEEECCEECCCC
Confidence 4669999999864 4599999999988 999999 56655 5799999999999999999998542
Q ss_pred -hH-HhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcC-CCcccCCccccCChHHHhhhhchh
Q psy7365 123 -MT-TIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLG-IPHKRTSLANTLSGGMQRKLDNVK 199 (601)
Q Consensus 123 -~~-~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g-l~~~~~~~~~~LSgG~~qr~~~~~ 199 (601)
.. ..++.+||+||++.+|+.+||+||+.|+... ..+.++.+++++++++.++ +.+..++++.+||||||||+++||
T Consensus 74 ~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~-~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAr 152 (240)
T 1ji0_A 74 PAHVINRMGIALVPEGRRIFPELTVYENLMMGAYN-RKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGR 152 (240)
T ss_dssp CHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTT-CCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHH
T ss_pred CHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhc-CCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHH
Confidence 22 2355699999999999999999999987422 2334456677889999995 999999999999999999998654
Q ss_pred hhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCc
Q psy7365 200 VWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAS 279 (601)
Q Consensus 200 ~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 279 (601)
|| +++ |+
T Consensus 153 aL--------------------------------------~~~-----------------------------------p~ 159 (240)
T 1ji0_A 153 AL--------------------------------------MSR-----------------------------------PK 159 (240)
T ss_dssp HH--------------------------------------TTC-----------------------------------CS
T ss_pred HH--------------------------------------HcC-----------------------------------CC
Confidence 33 233 58
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365 280 TVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS 348 (601)
Q Consensus 280 ~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~ 348 (601)
+|||||||+|||+.++..++++|+++. .+|+|||++|||++++..+||++++|.+|+++..+++
T Consensus 160 lllLDEPts~LD~~~~~~l~~~l~~~~-----~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 223 (240)
T 1ji0_A 160 LLMMDEPSLGLAPILVSEVFEVIQKIN-----QEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKA 223 (240)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHH-----HTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEH
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHH-----HCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 999999999999999999999999873 2589999999999999999999999999998876643
No 31
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=1.3e-42 Score=350.26 Aligned_cols=204 Identities=24% Similarity=0.327 Sum_probs=172.5
Q ss_pred hhcccccccccCCCccceeecceEEeec-----ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHH
Q psy7365 51 LFESLSENRDKLGIDSYGISDTSLEEQP-----LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTT 125 (601)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~ 125 (601)
.++||++.|++ .++|+||++.+ +||||| ||||| .++|+|+++|++|+|.++|.++... ..
T Consensus 3 ~~~~l~~~y~~------~l~~isl~i~~e~~~liG~nGs--GKSTL------l~~l~Gl~~p~~G~i~~~g~~~~~~-~~ 67 (240)
T 2onk_A 3 LKVRAEKRLGN------FRLNVDFEMGRDYCVLLGPTGA--GKSVF------LELIAGIVKPDRGEVRLNGADITPL-PP 67 (240)
T ss_dssp EEEEEEEEETT------EEEEEEEEECSSEEEEECCTTS--SHHHH------HHHHHTSSCCSEEEEEETTEECTTS-CT
T ss_pred EEEEEEEEeCC------EEeeeEEEECCEEEEEECCCCC--CHHHH------HHHHhCCCCCCceEEEECCEECCcC-ch
Confidence 47899999853 49999999876 999999 56665 5799999999999999999988542 22
Q ss_pred hcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchh
Q psy7365 126 IRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNK 205 (601)
Q Consensus 126 ~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~ 205 (601)
.++.+||+||++.+|+++||+||+.|+...++.+ ..++++.++++.+||.+..++++.+||||||||+++||||
T Consensus 68 ~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral---- 141 (240)
T 2onk_A 68 ERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERV--ERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARAL---- 141 (240)
T ss_dssp TTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHH--HHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHH----
T ss_pred hhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCc--hHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHH----
Confidence 3568999999999999999999999876544322 2256789999999999999999999999999999865433
Q ss_pred hHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEec
Q psy7365 206 AWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDE 285 (601)
Q Consensus 206 ~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDE 285 (601)
+++ |+++||||
T Consensus 142 ----------------------------------~~~-----------------------------------p~lllLDE 152 (240)
T 2onk_A 142 ----------------------------------VIQ-----------------------------------PRLLLLDE 152 (240)
T ss_dssp ----------------------------------TTC-----------------------------------CSSBEEES
T ss_pred ----------------------------------HcC-----------------------------------CCEEEEeC
Confidence 333 58999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365 286 PTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS 348 (601)
Q Consensus 286 PtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~ 348 (601)
||+|||+.+++.++++|+++.. ..|+|||++|||++++..+||++++|.+|+++..+++
T Consensus 153 Pts~LD~~~~~~~~~~l~~l~~----~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~ 211 (240)
T 2onk_A 153 PLSAVDLKTKGVLMEELRFVQR----EFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKL 211 (240)
T ss_dssp TTSSCCHHHHHHHHHHHHHHHH----HHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred CcccCCHHHHHHHHHHHHHHHH----hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999998732 2489999999999999999999999999999876643
No 32
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=6.7e-41 Score=388.11 Aligned_cols=111 Identities=23% Similarity=0.353 Sum_probs=103.7
Q ss_pred HHHHHHHHHcCCCc-ccccccCcCChHHHHHHHHHHHHhCC---CCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEE
Q psy7365 409 TIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTAIALLGN---TPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 484 (601)
Q Consensus 409 ~~~~~lLe~~~L~~-~~~~~~~~LSgGqkQRl~lA~AL~~~---P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVl 484 (601)
+++.++|+.++|.. ..++++.+|||||||||.||++|+.+ |++|||||||+|||+.+++.++++|++++++|.|||
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVI 787 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVI 787 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 46789999999987 46899999999999999999999996 799999999999999999999999999988899999
Q ss_pred EEccChhHHHhhCCEEEEE------eCCEEEEecCHHHHHHH
Q psy7365 485 LTSHNMEECEALCTKLTIM------VNGQFTCLGSATHLKSK 520 (601)
Q Consensus 485 lsTHdl~e~~~l~drv~iL------~~G~iv~~G~~~~L~~~ 520 (601)
++|||++++ .+||||++| ++|++++.|+++++.+.
T Consensus 788 visHdl~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~~~ 828 (842)
T 2vf7_A 788 AVEHKMQVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVAQA 828 (842)
T ss_dssp EECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHTTC
T ss_pred EEcCCHHHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHHhC
Confidence 999999999 789999999 79999999999998653
No 33
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.5e-41 Score=347.40 Aligned_cols=209 Identities=22% Similarity=0.298 Sum_probs=174.5
Q ss_pred hhhcccccccccCC-CccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc
Q psy7365 50 SLFESLSENRDKLG-IDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD 122 (601)
Q Consensus 50 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~ 122 (601)
..++||++.|+..+ ...++++|+||++.+ +||||| ||||| .++|+|+++|++|+|.++|.++...
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGs--GKSTL------l~~i~Gl~~p~~G~I~~~g~~~~~~ 74 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGS--GKSTL------LQIVAGLIEPTSGDVLYDGERKKGY 74 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTS--SHHHH------HHHHTTSSCCSEEEEEETTEECCHH
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCC--cHHHH------HHHHhCCCCCCCcEEEECCEECchH
Confidence 45899999985211 015699999999988 999999 56655 5799999999999999999988532
Q ss_pred hHHhcccEEEEccCC-CCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCC--cccCCccccCChHHHhhhhchh
Q psy7365 123 MTTIRRSLGVCPQYN-ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIP--HKRTSLANTLSGGMQRKLDNVK 199 (601)
Q Consensus 123 ~~~~~~~ig~v~Q~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LSgG~~qr~~~~~ 199 (601)
..++.+||+||+| .+|+.+||+||+.|+...+ .+.++.++++.++++.+||. +..++++.+||||||||+++||
T Consensus 75 --~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAr 151 (266)
T 2yz2_A 75 --EIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF-YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIAS 151 (266)
T ss_dssp --HHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT-CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHH
T ss_pred --HhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc-CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHH
Confidence 5567899999997 5677899999999976543 44334456788999999999 9999999999999999998654
Q ss_pred hhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCc
Q psy7365 200 VWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAS 279 (601)
Q Consensus 200 ~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 279 (601)
|| +++ |+
T Consensus 152 aL--------------------------------------~~~-----------------------------------p~ 158 (266)
T 2yz2_A 152 VI--------------------------------------VHE-----------------------------------PD 158 (266)
T ss_dssp HH--------------------------------------TTC-----------------------------------CS
T ss_pred HH--------------------------------------HcC-----------------------------------CC
Confidence 33 333 58
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccC
Q psy7365 280 TVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 347 (601)
Q Consensus 280 ~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~ 347 (601)
+|||||||+|||+.++..++++|+++. .+|+|||++|||++++..+||++++|.+|+++..++
T Consensus 159 lllLDEPts~LD~~~~~~l~~~l~~l~-----~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~ 221 (266)
T 2yz2_A 159 ILILDEPLVGLDREGKTDLLRIVEKWK-----TLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGT 221 (266)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHH-----HTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEE
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHH-----HcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999873 248999999999999999999999999999887654
No 34
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.4e-41 Score=349.85 Aligned_cols=210 Identities=20% Similarity=0.250 Sum_probs=173.2
Q ss_pred hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCC--
Q psy7365 49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIR-- 120 (601)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~-- 120 (601)
+..++||++.|++ ..+++|+||++.+ +||||| ||||| .++|+|+++|++|+|.++|.++.
T Consensus 21 ~l~~~~l~~~y~~----~~vL~~isl~i~~Ge~~~liG~NGs--GKSTL------lk~l~Gl~~p~~G~I~~~g~~~~~~ 88 (279)
T 2ihy_A 21 LIQLDQIGRMKQG----KTILKKISWQIAKGDKWILYGLNGA--GKTTL------LNILNAYEPATSGTVNLFGKMPGKV 88 (279)
T ss_dssp EEEEEEEEEEETT----EEEEEEEEEEEETTCEEEEECCTTS--SHHHH------HHHHTTSSCCSEEEEEETTBCCC--
T ss_pred eEEEEeEEEEECC----EEEEEeeeEEEcCCCEEEEECCCCC--cHHHH------HHHHhCCCCCCCeEEEECCEEcccc
Confidence 4669999999864 4699999999988 999999 56655 57999999999999999999885
Q ss_pred C-chHHhcccEEEEccCCCCC--CCCCHHHHHHHhHhh----cCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHh
Q psy7365 121 T-DMTTIRRSLGVCPQYNALF--DKLTVEEHMWFYSQL----KQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQR 193 (601)
Q Consensus 121 ~-~~~~~~~~ig~v~Q~~~~~--~~~tv~e~l~~~~~~----~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~q 193 (601)
. .....++.+||+||++.++ +.+||+||+.|+... ++.+.++.++++.++++.+||.+..++++.+|||||||
T Consensus 89 ~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkq 168 (279)
T 2ihy_A 89 GYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQ 168 (279)
T ss_dssp -CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHH
T ss_pred cCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHH
Confidence 2 3345677899999998643 356999999886421 22333455677899999999999999999999999999
Q ss_pred hhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhh
Q psy7365 194 KLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAM 273 (601)
Q Consensus 194 r~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 273 (601)
||++|||| +.+
T Consensus 169 Rv~lAraL--------------------------------------~~~------------------------------- 179 (279)
T 2ihy_A 169 RVMIARAL--------------------------------------MGQ------------------------------- 179 (279)
T ss_dssp HHHHHHHH--------------------------------------HTC-------------------------------
T ss_pred HHHHHHHH--------------------------------------hCC-------------------------------
Confidence 99865433 233
Q ss_pred ccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEE--EEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365 274 SFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTV--ILTTHYMDEADLLGDRIAIIAAGKLQCCGSS 348 (601)
Q Consensus 274 ~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TV--I~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~ 348 (601)
|++|||||||+|||+.+++.++++|+++. .+|+|| |++|||++++..+||++++|.+|+++..+++
T Consensus 180 ----p~lLlLDEPts~LD~~~~~~l~~~l~~l~-----~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 247 (279)
T 2ihy_A 180 ----PQVLILDEPAAGLDFIARESLLSILDSLS-----DSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAV 247 (279)
T ss_dssp ----CSEEEEESTTTTCCHHHHHHHHHHHHHHH-----HHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEH
T ss_pred ----CCEEEEeCCccccCHHHHHHHHHHHHHHH-----HCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 58999999999999999999999999873 238899 9999999999999999999999999877654
No 35
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=1.2e-40 Score=337.58 Aligned_cols=209 Identities=18% Similarity=0.228 Sum_probs=169.4
Q ss_pred hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCC--CCCCeeEEEEccccCCC
Q psy7365 50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGM--LPVSSGTAKIYDHDIRT 121 (601)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl--~~~~~G~v~~~g~~~~~ 121 (601)
..+++|++.|++ .++++|+||++.+ +||||| ||||| .++|+|+ ++|++|+|.++|.++..
T Consensus 4 l~~~~l~~~y~~----~~vl~~vsl~i~~Ge~~~l~G~nGs--GKSTL------lk~l~Gl~~~~p~~G~I~~~g~~~~~ 71 (250)
T 2d2e_A 4 LEIRDLWASIDG----ETILKGVNLVVPKGEVHALMGPNGA--GKSTL------GKILAGDPEYTVERGEILLDGENILE 71 (250)
T ss_dssp EEEEEEEEEETT----EEEEEEEEEEEETTCEEEEECSTTS--SHHHH------HHHHHTCTTCEEEEEEEEETTEECTT
T ss_pred EEEEeEEEEECC----EEEEeceEEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCCceEEEECCEECCC
Confidence 558999999864 4699999999988 999999 56655 5799999 89999999999999854
Q ss_pred c-hH-HhcccEEEEccCCCCCCCCCHHHHHHHhHhh-cC--CChHHHHHHHHHHHHHcCC-CcccCCcccc-CChHHHhh
Q psy7365 122 D-MT-TIRRSLGVCPQYNALFDKLTVEEHMWFYSQL-KQ--VPKDLAQLEISNMIGDLGI-PHKRTSLANT-LSGGMQRK 194 (601)
Q Consensus 122 ~-~~-~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~-~~--~~~~~~~~~~~~~l~~~gl-~~~~~~~~~~-LSgG~~qr 194 (601)
. .. ..+..++|+||+|.+|+.+||.||+.|+... .+ .+..+..+++.++++.+|+ .+..++++++ ||||||||
T Consensus 72 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQr 151 (250)
T 2d2e_A 72 LSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKR 151 (250)
T ss_dssp SCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHH
T ss_pred CCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHH
Confidence 2 22 2345699999999999999999999987542 23 2344556778899999999 4788999999 99999999
Q ss_pred hhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhc
Q psy7365 195 LDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMS 274 (601)
Q Consensus 195 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 274 (601)
+++|||| +++
T Consensus 152 v~iAraL--------------------------------------~~~-------------------------------- 161 (250)
T 2d2e_A 152 NEILQLL--------------------------------------VLE-------------------------------- 161 (250)
T ss_dssp HHHHHHH--------------------------------------HHC--------------------------------
T ss_pred HHHHHHH--------------------------------------HcC--------------------------------
Confidence 9865433 333
Q ss_pred cCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhc-CCEEEEecCCccccccCc
Q psy7365 275 FVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLL-GDRIAIIAAGKLQCCGSS 348 (601)
Q Consensus 275 ~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l-~Drv~vL~~GkIv~~G~~ 348 (601)
|+++||||||+|||+.++..++++|+++ +.+|+|||++|||++++..+ ||++++|.+|+++..+++
T Consensus 162 ---p~lllLDEPts~LD~~~~~~l~~~l~~l-----~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~ 228 (250)
T 2d2e_A 162 ---PTYAVLDETDSGLDIDALKVVARGVNAM-----RGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGP 228 (250)
T ss_dssp ---CSEEEEECGGGTTCHHHHHHHHHHHHHH-----CSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESH
T ss_pred ---CCEEEEeCCCcCCCHHHHHHHHHHHHHH-----HhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCH
Confidence 5899999999999999999999999987 23589999999999999988 599999999999877654
No 36
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=7.8e-40 Score=334.80 Aligned_cols=210 Identities=21% Similarity=0.261 Sum_probs=172.7
Q ss_pred hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCC--CCCCeeEEEEccccCC
Q psy7365 49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGM--LPVSSGTAKIYDHDIR 120 (601)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl--~~~~~G~v~~~g~~~~ 120 (601)
+..+++|++.|++ ..+++|+||++.+ +||||| ||||| .++|+|+ ++|++|+|.++|.++.
T Consensus 20 ~l~~~~l~~~y~~----~~vl~~vsl~i~~Ge~~~l~G~NGs--GKSTL------lk~l~Gl~~~~p~~G~I~~~g~~i~ 87 (267)
T 2zu0_C 20 MLSIKDLHVSVED----KAILRGLSLDVHPGEVHAIMGPNGS--GKSTL------SATLAGREDYEVTGGTVEFKGKDLL 87 (267)
T ss_dssp CEEEEEEEEEETT----EEEEEEEEEEECTTCEEEEECCTTS--SHHHH------HHHHHTCTTCEEEEEEEEETTEEGG
T ss_pred eEEEEeEEEEECC----EEEEEeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCCCeEEEECCEECC
Confidence 4669999999853 4699999999988 999999 56655 5799999 4799999999999875
Q ss_pred Cc-hHH-hcccEEEEccCCCCCCCCCHHHHHHHhHhh----cC---CChHHHHHHHHHHHHHcCCC-cccCCccc-cCCh
Q psy7365 121 TD-MTT-IRRSLGVCPQYNALFDKLTVEEHMWFYSQL----KQ---VPKDLAQLEISNMIGDLGIP-HKRTSLAN-TLSG 189 (601)
Q Consensus 121 ~~-~~~-~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~----~~---~~~~~~~~~~~~~l~~~gl~-~~~~~~~~-~LSg 189 (601)
.. ... .+..+||+||++.+|+.+||.||+.+.... ++ .+.++.++++.++++.+||. ...++++. +|||
T Consensus 88 ~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSg 167 (267)
T 2zu0_C 88 ALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSG 167 (267)
T ss_dssp GSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCH
T ss_pred cCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCH
Confidence 32 222 244699999999999999999999876421 22 23445567889999999997 57889997 5999
Q ss_pred HHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHH
Q psy7365 190 GMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTV 269 (601)
Q Consensus 190 G~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~ 269 (601)
|||||++||||| +++
T Consensus 168 Gq~QRv~iAraL--------------------------------------~~~--------------------------- 182 (267)
T 2zu0_C 168 GEKKRNDILQMA--------------------------------------VLE--------------------------- 182 (267)
T ss_dssp HHHHHHHHHHHH--------------------------------------HHC---------------------------
T ss_pred HHHHHHHHHHHH--------------------------------------HhC---------------------------
Confidence 999999865433 233
Q ss_pred HHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhc-CCEEEEecCCccccccCc
Q psy7365 270 LFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLL-GDRIAIIAAGKLQCCGSS 348 (601)
Q Consensus 270 ~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l-~Drv~vL~~GkIv~~G~~ 348 (601)
|++|||||||+|||+.++..++++|+++ +.+|+|||++|||++++..+ |||+++|.+|+++..+++
T Consensus 183 --------p~lLlLDEPts~LD~~~~~~l~~~l~~l-----~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~ 249 (267)
T 2zu0_C 183 --------PELCILDESDSGLDIDALKVVADGVNSL-----RDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 249 (267)
T ss_dssp --------CSEEEEESTTTTCCHHHHHHHHHHHHTT-----CCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECT
T ss_pred --------CCEEEEeCCCCCCCHHHHHHHHHHHHHH-----HhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCH
Confidence 5899999999999999999999999886 23589999999999999886 999999999999877654
No 37
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.2e-39 Score=330.98 Aligned_cols=198 Identities=20% Similarity=0.287 Sum_probs=167.4
Q ss_pred hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCch
Q psy7365 50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDM 123 (601)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~ 123 (601)
..+++|++.|+. +..+++|+||++.+ +||||| ||||| .++|+|+++|++|+|.
T Consensus 5 l~i~~l~~~y~~---~~~vl~~isl~i~~Ge~~~l~G~nGs--GKSTL------l~~l~Gl~~p~~G~I~---------- 63 (253)
T 2nq2_C 5 LSVENLGFYYQA---ENFLFQQLNFDLNKGDILAVLGQNGC--GKSTL------LDLLLGIHRPIQGKIE---------- 63 (253)
T ss_dssp EEEEEEEEEETT---TTEEEEEEEEEEETTCEEEEECCSSS--SHHHH------HHHHTTSSCCSEEEEE----------
T ss_pred EEEeeEEEEeCC---CCeEEEEEEEEECCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCcEEE----------
Confidence 568999999861 24699999999988 999999 56665 6799999999999998
Q ss_pred HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhc-C---CChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchh
Q psy7365 124 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK-Q---VPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVK 199 (601)
Q Consensus 124 ~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~-~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~ 199 (601)
.++.+||+||++.+|+.+||+||+.|+.... + .+....++++.++++.+||.+..++++.+||||||||+++||
T Consensus 64 --~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAr 141 (253)
T 2nq2_C 64 --VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIAR 141 (253)
T ss_dssp --ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHH
T ss_pred --EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHH
Confidence 2567999999999999999999999875432 2 233445677899999999999999999999999999998654
Q ss_pred hhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCc
Q psy7365 200 VWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAS 279 (601)
Q Consensus 200 ~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 279 (601)
|| +++ |+
T Consensus 142 aL--------------------------------------~~~-----------------------------------p~ 148 (253)
T 2nq2_C 142 AI--------------------------------------ASE-----------------------------------CK 148 (253)
T ss_dssp HH--------------------------------------HTT-----------------------------------CS
T ss_pred HH--------------------------------------HcC-----------------------------------CC
Confidence 33 233 58
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365 280 TVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS 348 (601)
Q Consensus 280 ~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~ 348 (601)
+|||||||+|||+.++..++++|+++. +..|+|||++|||++++..+||++++|.+|+ +..+.+
T Consensus 149 lllLDEPts~LD~~~~~~l~~~l~~l~----~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~ 212 (253)
T 2nq2_C 149 LILLDEPTSALDLANQDIVLSLLIDLA----QSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGET 212 (253)
T ss_dssp EEEESSSSTTSCHHHHHHHHHHHHHHH----HTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCH
Confidence 999999999999999999999999873 2238999999999999999999999999999 766643
No 38
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=1.7e-40 Score=329.26 Aligned_cols=191 Identities=18% Similarity=0.212 Sum_probs=162.9
Q ss_pred hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCch
Q psy7365 50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDM 123 (601)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~ 123 (601)
..+++|++.|++ .+++|+||++.+ +||||| ||||| .++|+|+++|++|+|.++|.++.
T Consensus 11 l~~~~ls~~y~~-----~il~~vsl~i~~Ge~~~iiG~NGs--GKSTL------lk~l~Gl~~p~~G~I~~~g~~~~--- 74 (214)
T 1sgw_A 11 LEIRDLSVGYDK-----PVLERITMTIEKGNVVNFHGPNGI--GKTTL------LKTISTYLKPLKGEIIYNGVPIT--- 74 (214)
T ss_dssp EEEEEEEEESSS-----EEEEEEEEEEETTCCEEEECCTTS--SHHHH------HHHHTTSSCCSEEEEEETTEEGG---
T ss_pred EEEEEEEEEeCC-----eEEeeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHhcCCCCCCeEEEECCEEhh---
Confidence 348999999853 599999999988 999999 56655 57999999999999999999874
Q ss_pred HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcc
Q psy7365 124 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFN 203 (601)
Q Consensus 124 ~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~ 203 (601)
..++.+||+||++.+|+.+||.||+.|+...++. ... ++++.++++.+|+.+. ++++.+||||||||+++|||+
T Consensus 75 -~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~-~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL-- 148 (214)
T 1sgw_A 75 -KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KVN-KNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTL-- 148 (214)
T ss_dssp -GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CCC-HHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHT--
T ss_pred -hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-chH-HHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHH--
Confidence 2467899999999999999999999998765553 222 4678899999999988 999999999999999864433
Q ss_pred hhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEE
Q psy7365 204 NKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVIL 283 (601)
Q Consensus 204 ~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liL 283 (601)
+.+ |+++||
T Consensus 149 ------------------------------------~~~-----------------------------------p~lllL 157 (214)
T 1sgw_A 149 ------------------------------------LVN-----------------------------------AEIYVL 157 (214)
T ss_dssp ------------------------------------TSC-----------------------------------CSEEEE
T ss_pred ------------------------------------HhC-----------------------------------CCEEEE
Confidence 233 589999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEec
Q psy7365 284 DEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIA 338 (601)
Q Consensus 284 DEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~ 338 (601)
||||+|||+.++..++++|+++. .+|+|||++||+++++..+||++++++
T Consensus 158 DEPts~LD~~~~~~l~~~l~~~~-----~~g~tiiivtHd~~~~~~~~d~v~~~~ 207 (214)
T 1sgw_A 158 DDPVVAIDEDSKHKVLKSILEIL-----KEKGIVIISSREELSYCDVNENLHKYS 207 (214)
T ss_dssp ESTTTTSCTTTHHHHHHHHHHHH-----HHHSEEEEEESSCCTTSSEEEEGGGGB
T ss_pred ECCCcCCCHHHHHHHHHHHHHHH-----hCCCEEEEEeCCHHHHHHhCCEEEEeC
Confidence 99999999999999999999873 247899999999999999999987654
No 39
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=9.1e-40 Score=331.10 Aligned_cols=206 Identities=17% Similarity=0.243 Sum_probs=169.8
Q ss_pred hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365 50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D 122 (601)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~ 122 (601)
..+++|++. .+++|+||++.+ +||||| ||||| .++|+|+++|+ |+|.++|.++.. .
T Consensus 5 l~~~~l~~~--------~vl~~vsl~i~~Ge~~~liG~NGs--GKSTL------lk~l~Gl~~p~-G~i~~~g~~~~~~~ 67 (249)
T 2qi9_C 5 MQLQDVAES--------TRLGPLSGEVRAGEILHLVGPNGA--GKSTL------LARMAGMTSGK-GSIQFAGQPLEAWS 67 (249)
T ss_dssp EEEEEEEET--------TTEEEEEEEEETTCEEEEECCTTS--SHHHH------HHHHTTSSCCE-EEEEETTEEGGGSC
T ss_pred EEEEceEEE--------EEEeeeEEEEcCCCEEEEECCCCC--cHHHH------HHHHhCCCCCC-eEEEECCEECCcCC
Confidence 458899886 489999999988 999999 56665 57999999999 999999998743 2
Q ss_pred hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhc
Q psy7365 123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWF 202 (601)
Q Consensus 123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~ 202 (601)
....++.+||+||++.+|+.+||+||+.|+.. .+.+ ++++.++++.+|+.+..++++.+||||||||+++||||+
T Consensus 68 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~-~~~~----~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~ 142 (249)
T 2qi9_C 68 ATKLALHRAYLSQQQTPPFATPVWHYLTLHQH-DKTR----TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVL 142 (249)
T ss_dssp HHHHHHHEEEECSCCCCCTTCBHHHHHHTTCS-STTC----HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHhceEEEECCCCccCCCCcHHHHHHHhhc-cCCc----HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHH
Confidence 34556789999999999999999999988632 1222 456889999999999999999999999999998766544
Q ss_pred chhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEE
Q psy7365 203 NNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVI 282 (601)
Q Consensus 203 ~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~li 282 (601)
.+|.- + ..++.+||
T Consensus 143 ~~p~~-----------------------------------~-------------------------------~~~~~lll 156 (249)
T 2qi9_C 143 QITPQ-----------------------------------A-------------------------------NPAGQLLL 156 (249)
T ss_dssp HHCTT-----------------------------------T-------------------------------CTTCCEEE
T ss_pred cCCCc-----------------------------------C-------------------------------CCCCeEEE
Confidence 43210 0 00122999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365 283 LDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS 348 (601)
Q Consensus 283 LDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~ 348 (601)
|||||+|||+.++..++++|+++. .+|+|||++|||++++..+||++++|.+|+++..+++
T Consensus 157 LDEPts~LD~~~~~~l~~~l~~l~-----~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 217 (249)
T 2qi9_C 157 LDEPMNSLDVAQQSALDKILSALS-----QQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRR 217 (249)
T ss_dssp ESSTTTTCCHHHHHHHHHHHHHHH-----HTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEH
T ss_pred EECCcccCCHHHHHHHHHHHHHHH-----hCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999873 2489999999999999999999999999999876654
No 40
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1e-39 Score=334.60 Aligned_cols=211 Identities=19% Similarity=0.273 Sum_probs=169.5
Q ss_pred hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-
Q psy7365 49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT- 121 (601)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~- 121 (601)
++.+++|++.|++. ...++|+|+||++.+ +||||| ||||| .++|+|+++|++|+|.++|.++..
T Consensus 16 ~l~~~~l~~~y~~~-~~~~vl~~vsl~i~~Ge~~~i~G~nGs--GKSTL------lk~l~Gl~~p~~G~I~~~g~~i~~~ 86 (271)
T 2ixe_A 16 LVKFQDVSFAYPNH-PNVQVLQGLTFTLYPGKVTALVGPNGS--GKSTV------AALLQNLYQPTGGKVLLDGEPLVQY 86 (271)
T ss_dssp CEEEEEEEECCTTC-TTSCCEEEEEEEECTTCEEEEECSTTS--SHHHH------HHHHTTSSCCSEEEEEETTEEGGGB
T ss_pred eEEEEEEEEEeCCC-CCceeeEeeEEEECCCCEEEEECCCCC--CHHHH------HHHHhcCCCCCCCEEEECCEEcccC
Confidence 45699999998641 125699999999988 999999 56655 579999999999999999998853
Q ss_pred chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHH-----HHHHHHHHHHc--CCCcccCCccccCChHHHhh
Q psy7365 122 DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLA-----QLEISNMIGDL--GIPHKRTSLANTLSGGMQRK 194 (601)
Q Consensus 122 ~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--gl~~~~~~~~~~LSgG~~qr 194 (601)
....+++.||||||++.+|+ .||+||+.|+..... ..++. ...+.++++.+ |+....++++.+||||||||
T Consensus 87 ~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QR 164 (271)
T 2ixe_A 87 DHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRTP-TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQA 164 (271)
T ss_dssp CHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSCC-CHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHH
T ss_pred CHHHHhccEEEEecCCcccc-ccHHHHHhhhcccCC-hHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHH
Confidence 23345678999999999887 599999998653221 10211 22356778888 78888999999999999999
Q ss_pred hhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhc
Q psy7365 195 LDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMS 274 (601)
Q Consensus 195 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 274 (601)
++||||| +++
T Consensus 165 v~lAraL--------------------------------------~~~-------------------------------- 174 (271)
T 2ixe_A 165 VALARAL--------------------------------------IRK-------------------------------- 174 (271)
T ss_dssp HHHHHHH--------------------------------------TTC--------------------------------
T ss_pred HHHHHHH--------------------------------------hcC--------------------------------
Confidence 9865433 233
Q ss_pred cCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365 275 FVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS 348 (601)
Q Consensus 275 ~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~ 348 (601)
|++|||||||+|||+.++..++++|+++. +..|+|||++|||++++.. ||++++|.+|+++..+++
T Consensus 175 ---p~lllLDEPts~LD~~~~~~i~~~l~~~~----~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i~~~g~~ 240 (271)
T 2ixe_A 175 ---PRLLILDNATSALDAGNQLRVQRLLYESP----EWASRTVLLITQQLSLAER-AHHILFLKEGSVCEQGTH 240 (271)
T ss_dssp ---CSEEEEESTTTTCCHHHHHHHHHHHHHCT----TTTTSEEEEECSCHHHHTT-CSEEEEEETTEEEEEECH
T ss_pred ---CCEEEEECCccCCCHHHHHHHHHHHHHHH----hhcCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCH
Confidence 58999999999999999999999999872 2348999999999999875 999999999999876654
No 41
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=2.8e-39 Score=327.06 Aligned_cols=201 Identities=23% Similarity=0.326 Sum_probs=161.3
Q ss_pred hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-ch
Q psy7365 51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-DM 123 (601)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~~ 123 (601)
.+++|++.|. +....+++|+||++.+ +||||| ||||| .++|+|+++|++|+|.++|.++.. ..
T Consensus 9 ~~~~l~~~y~--~~~~~vl~~vsl~i~~Ge~~~i~G~nGs--GKSTL------l~~l~Gl~~p~~G~I~i~g~~~~~~~~ 78 (247)
T 2ff7_A 9 TFRNIRFRYK--PDSPVILDNINLSIKQGEVIGIVGRSGS--GKSTL------TKLIQRFYIPENGQVLIDGHDLALADP 78 (247)
T ss_dssp EEEEEEEESS--TTSCEEEEEEEEEEETTCEEEEECSTTS--SHHHH------HHHHTTSSCCSEEEEEETTEETTTSCH
T ss_pred eEEEEEEEeC--CCCcceeeeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHhcCCCCCCcEEEECCEEhhhCCH
Confidence 4899999983 1235699999999988 999999 56655 579999999999999999999864 33
Q ss_pred HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcc-----------cCCccccCChHHH
Q psy7365 124 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHK-----------RTSLANTLSGGMQ 192 (601)
Q Consensus 124 ~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgG~~ 192 (601)
..+++.+|||||++.+|+ .||+||+.|+.. ..+ .+++.++++.+|+.+. .++++.+||||||
T Consensus 79 ~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~--~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~ 151 (247)
T 2ff7_A 79 NWLRRQVGVVLQDNVLLN-RSIIDNISLANP--GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQR 151 (247)
T ss_dssp HHHHHHEEEECSSCCCTT-SBHHHHHTTTCT--TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHH
T ss_pred HHHHhcEEEEeCCCcccc-ccHHHHHhccCC--CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHH
Confidence 456678999999999886 599999988632 222 2345566666666543 4456789999999
Q ss_pred hhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHh
Q psy7365 193 RKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFA 272 (601)
Q Consensus 193 qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 272 (601)
||+++|||| +++
T Consensus 152 qRv~iAraL--------------------------------------~~~------------------------------ 163 (247)
T 2ff7_A 152 QRIAIARAL--------------------------------------VNN------------------------------ 163 (247)
T ss_dssp HHHHHHHHH--------------------------------------TTC------------------------------
T ss_pred HHHHHHHHH--------------------------------------hcC------------------------------
Confidence 999865433 233
Q ss_pred hccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365 273 MSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS 348 (601)
Q Consensus 273 ~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~ 348 (601)
|+++||||||+|||+.++..++++|+++. +|+|||++||+++++. .||++++|.+|+++..+++
T Consensus 164 -----p~lllLDEPts~LD~~~~~~i~~~l~~~~------~g~tviivtH~~~~~~-~~d~v~~l~~G~i~~~g~~ 227 (247)
T 2ff7_A 164 -----PKILIFDEATSALDYESEHVIMRNMHKIC------KGRTVIIIAHRLSTVK-NADRIIVMEKGKIVEQGKH 227 (247)
T ss_dssp -----CSEEEECCCCSCCCHHHHHHHHHHHHHHH------TTSEEEEECSSGGGGT-TSSEEEEEETTEEEEEECH
T ss_pred -----CCEEEEeCCcccCCHHHHHHHHHHHHHHc------CCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEECCH
Confidence 58999999999999999999999999872 4899999999999886 4999999999999876654
No 42
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=5.5e-39 Score=334.39 Aligned_cols=206 Identities=26% Similarity=0.395 Sum_probs=164.0
Q ss_pred hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365 50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D 122 (601)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~ 122 (601)
+.++||++.|+. ..++|+|+||++.+ +||||| ||||| .++|+|+++|++|+|.++|.++.. +
T Consensus 54 i~~~~vs~~y~~---~~~vL~~isl~i~~Ge~vaivG~sGs--GKSTL------l~ll~gl~~p~~G~I~i~G~~i~~~~ 122 (306)
T 3nh6_A 54 IEFENVHFSYAD---GRETLQDVSFTVMPGQTLALVGPSGA--GKSTI------LRLLFRFYDISSGCIRIDGQDISQVT 122 (306)
T ss_dssp EEEEEEEEESST---TCEEEEEEEEEECTTCEEEEESSSCH--HHHHH------HHHHTTSSCCSEEEEEETTEETTSBC
T ss_pred EEEEEEEEEcCC---CCceeeeeeEEEcCCCEEEEECCCCc--hHHHH------HHHHHcCCCCCCcEEEECCEEcccCC
Confidence 559999999852 35699999999988 999999 56554 579999999999999999999965 3
Q ss_pred hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHH-----HHHHHHHc--CCCcccCCccccCChHHHhhh
Q psy7365 123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE-----ISNMIGDL--GIPHKRTSLANTLSGGMQRKL 195 (601)
Q Consensus 123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LSgG~~qr~ 195 (601)
...+|+.||||||+|.+|+ .||+||+.|+....+ .++..+. +.+.++.+ |+....++...+||||||||+
T Consensus 123 ~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~~~--~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRv 199 (306)
T 3nh6_A 123 QASLRSHIGVVPQDTVLFN-DTIADNIRYGRVTAG--NDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRV 199 (306)
T ss_dssp HHHHHHTEEEECSSCCCCS-EEHHHHHHTTSTTCC--HHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHH
T ss_pred HHHHhcceEEEecCCccCc-ccHHHHHHhhcccCC--HHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHH
Confidence 4567889999999999884 699999998754322 2221111 11233333 445556677889999999999
Q ss_pred hchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhcc
Q psy7365 196 DNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSF 275 (601)
Q Consensus 196 ~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 275 (601)
+|||||+ .+
T Consensus 200 aiARAL~--------------------------------------~~--------------------------------- 208 (306)
T 3nh6_A 200 AIARTIL--------------------------------------KA--------------------------------- 208 (306)
T ss_dssp HHHHHHH--------------------------------------HC---------------------------------
T ss_pred HHHHHHH--------------------------------------hC---------------------------------
Confidence 8665433 33
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcc
Q psy7365 276 VPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV 349 (601)
Q Consensus 276 ~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~ 349 (601)
|++|||||||++||+.+...+++.|.++. .++|+|++||+++.+.. ||+|++|++|+++..|+..
T Consensus 209 --p~iLlLDEPts~LD~~~~~~i~~~l~~l~------~~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv~~G~~~ 273 (306)
T 3nh6_A 209 --PGIILLDEATSALDTSNERAIQASLAKVC------ANRTTIVVAHRLSTVVN-ADQILVIKDGCIVERGRHE 273 (306)
T ss_dssp --CSEEEEECCSSCCCHHHHHHHHHHHHHHH------TTSEEEEECCSHHHHHT-CSEEEEEETTEEEEEECHH
T ss_pred --CCEEEEECCcccCCHHHHHHHHHHHHHHc------CCCEEEEEEcChHHHHc-CCEEEEEECCEEEEECCHH
Confidence 58999999999999999999999999873 47899999999999986 9999999999999888654
No 43
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=4.5e-39 Score=324.64 Aligned_cols=201 Identities=21% Similarity=0.299 Sum_probs=163.3
Q ss_pred hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-ch
Q psy7365 51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-DM 123 (601)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~~ 123 (601)
.++||++.|+ +...+++|+||++.+ +||||| ||||| .++|+|+++|++|+|.++|.++.. +.
T Consensus 3 ~~~~l~~~y~---~~~~vl~~vsl~i~~Ge~~~i~G~nGs--GKSTL------l~~l~Gl~~p~~G~i~~~g~~~~~~~~ 71 (243)
T 1mv5_A 3 SARHVDFAYD---DSEQILRDISFEAQPNSIIAFAGPSGG--GKSTI------FSLLERFYQPTAGEITIDGQPIDNISL 71 (243)
T ss_dssp EEEEEEECSS---SSSCSEEEEEEEECTTEEEEEECCTTS--SHHHH------HHHHTTSSCCSBSCEEETTEESTTTSC
T ss_pred EEEEEEEEeC---CCCceEEEeEEEEcCCCEEEEECCCCC--CHHHH------HHHHhcCCCCCCcEEEECCEEhhhCCH
Confidence 4789999983 234699999999988 999999 56655 579999999999999999998854 22
Q ss_pred HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCC-----------ccccCChHHH
Q psy7365 124 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTS-----------LANTLSGGMQ 192 (601)
Q Consensus 124 ~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgG~~ 192 (601)
...++.+||+||++.+|+ .||+||+.|+.. .+.+ ++++.++++.+|+.+..++ ++.+||||||
T Consensus 72 ~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~-~~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~ 145 (243)
T 1mv5_A 72 ENWRSQIGFVSQDSAIMA-GTIRENLTYGLE-GDYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQR 145 (243)
T ss_dssp SCCTTTCCEECCSSCCCC-EEHHHHTTSCTT-SCSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHH
T ss_pred HHHHhhEEEEcCCCcccc-ccHHHHHhhhcc-CCCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHH
Confidence 345678999999999887 599999987632 1222 2356778899988776544 4679999999
Q ss_pred hhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHh
Q psy7365 193 RKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFA 272 (601)
Q Consensus 193 qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 272 (601)
||+++|||| +++
T Consensus 146 qrv~lAral--------------------------------------~~~------------------------------ 157 (243)
T 1mv5_A 146 QRLAIARAF--------------------------------------LRN------------------------------ 157 (243)
T ss_dssp HHHHHHHHH--------------------------------------HHC------------------------------
T ss_pred HHHHHHHHH--------------------------------------hcC------------------------------
Confidence 999865443 233
Q ss_pred hccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365 273 MSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS 348 (601)
Q Consensus 273 ~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~ 348 (601)
|+++||||||+|||+.++..+++.|+++ + +|+|||++||+++++. .||++++|.+|+++..+++
T Consensus 158 -----p~lllLDEPts~LD~~~~~~i~~~l~~~-----~-~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~ 221 (243)
T 1mv5_A 158 -----PKILMLDEATASLDSESESMVQKALDSL-----M-KGRTTLVIAHRLSTIV-DADKIYFIEKGQITGSGKH 221 (243)
T ss_dssp -----CSEEEEECCSCSSCSSSCCHHHHHHHHH-----H-TTSEEEEECCSHHHHH-HCSEEEEEETTEECCCSCH
T ss_pred -----CCEEEEECCcccCCHHHHHHHHHHHHHh-----c-CCCEEEEEeCChHHHH-hCCEEEEEECCEEEEeCCH
Confidence 5899999999999999999999999987 2 4899999999999886 5999999999999876654
No 44
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=4e-38 Score=321.46 Aligned_cols=201 Identities=22% Similarity=0.284 Sum_probs=166.8
Q ss_pred hhcccccccccCCCccceeecceEEeec-----ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHH
Q psy7365 51 LFESLSENRDKLGIDSYGISDTSLEEQP-----LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTT 125 (601)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~ 125 (601)
.+++|++.|++......+++|+||++.- +||||| ||||| .++|+|++ |++|+|.++|.++... ..
T Consensus 3 ~~~~l~~~y~~~~~~~~il~~vsl~i~Ge~~~i~G~NGs--GKSTL------lk~l~Gl~-p~~G~I~~~g~~~~~~-~~ 72 (263)
T 2pjz_A 3 QLKNVGITLSGKGYERFSLENINLEVNGEKVIILGPNGS--GKTTL------LRAISGLL-PYSGNIFINGMEVRKI-RN 72 (263)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEECSSEEEEECCTTS--SHHHH------HHHHTTSS-CCEEEEEETTEEGGGC-SC
T ss_pred EEEEEEEEeCCCCccceeEEeeeEEECCEEEEEECCCCC--CHHHH------HHHHhCCC-CCCcEEEECCEECcch-HH
Confidence 4789999986421225699999999843 999999 56655 57999999 9999999999987533 22
Q ss_pred hcccEE-EEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCC-cccCCccccCChHHHhhhhchhhhcc
Q psy7365 126 IRRSLG-VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIP-HKRTSLANTLSGGMQRKLDNVKVWFN 203 (601)
Q Consensus 126 ~~~~ig-~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~~qr~~~~~~~~~ 203 (601)
++.+| |+||++.+ .+||.||+.|+...+... ++++.++++.+|+. +..++++.+||||||||+++||||
T Consensus 73 -~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL-- 143 (263)
T 2pjz_A 73 -YIRYSTNLPEAYEI--GVTVNDIVYLYEELKGLD----RDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLAL-- 143 (263)
T ss_dssp -CTTEEECCGGGSCT--TSBHHHHHHHHHHHTCCC----HHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHH--
T ss_pred -hhheEEEeCCCCcc--CCcHHHHHHHhhhhcchH----HHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHH--
Confidence 66899 99999987 899999999976544222 35678899999999 999999999999999999865432
Q ss_pred hhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEE
Q psy7365 204 NKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVIL 283 (601)
Q Consensus 204 ~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liL 283 (601)
+++ |+++||
T Consensus 144 ------------------------------------~~~-----------------------------------p~lllL 152 (263)
T 2pjz_A 144 ------------------------------------ASQ-----------------------------------PEIVGL 152 (263)
T ss_dssp ------------------------------------HTC-----------------------------------CSEEEE
T ss_pred ------------------------------------HhC-----------------------------------CCEEEE
Confidence 333 589999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCC-EEEEecCCccccccCcc
Q psy7365 284 DEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGD-RIAIIAAGKLQCCGSSV 349 (601)
Q Consensus 284 DEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~D-rv~vL~~GkIv~~G~~~ 349 (601)
||||+|||+.++..+++.|+++ + . |||++|||++++..+|| ++++|.+|+++..+++.
T Consensus 153 DEPts~LD~~~~~~l~~~L~~~-----~--~-tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~ 211 (263)
T 2pjz_A 153 DEPFENVDAARRHVISRYIKEY-----G--K-EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVS 211 (263)
T ss_dssp ECTTTTCCHHHHHHHHHHHHHS-----C--S-EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHH
T ss_pred ECCccccCHHHHHHHHHHHHHh-----c--C-cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHH
Confidence 9999999999999999999886 1 2 99999999999999999 99999999998777543
No 45
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1.4e-37 Score=317.01 Aligned_cols=202 Identities=19% Similarity=0.301 Sum_probs=161.4
Q ss_pred hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365 50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D 122 (601)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~ 122 (601)
+.+++|++.|++.. ..++++|+||++.+ +||||| ||||| .++|+|+++| +|+|.++|.++.. .
T Consensus 18 l~i~~l~~~y~~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGs--GKSTL------l~~l~Gl~~~-~G~I~i~g~~i~~~~ 87 (260)
T 2ghi_A 18 IEFSDVNFSYPKQT-NHRTLKSINFFIPSGTTCALVGHTGS--GKSTI------AKLLYRFYDA-EGDIKIGGKNVNKYN 87 (260)
T ss_dssp EEEEEEEECCTTCC-SSCSEEEEEEEECTTCEEEEECSTTS--SHHHH------HHHHTTSSCC-EEEEEETTEEGGGBC
T ss_pred EEEEEEEEEeCCCC-cCceeEeeEEEECCCCEEEEECCCCC--CHHHH------HHHHhccCCC-CeEEEECCEEhhhcC
Confidence 55899999986421 24699999999988 999999 56655 5799999997 8999999998853 2
Q ss_pred hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcc-----------cCCccccCChHH
Q psy7365 123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHK-----------RTSLANTLSGGM 191 (601)
Q Consensus 123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgG~ 191 (601)
...+++.+||+||+|.+|+ .||+||+.|+.. ... .+++.++++.+++.+. .++++.+|||||
T Consensus 88 ~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~--~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGq 160 (260)
T 2ghi_A 88 RNSIRSIIGIVPQDTILFN-ETIKYNILYGKL--DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGE 160 (260)
T ss_dssp HHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT--TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHH
T ss_pred HHHHhccEEEEcCCCcccc-cCHHHHHhccCC--CCC----HHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHH
Confidence 3456778999999999886 699999988532 122 2345566777776432 346789999999
Q ss_pred HhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHH
Q psy7365 192 QRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLF 271 (601)
Q Consensus 192 ~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 271 (601)
|||+++|||+ +++
T Consensus 161 kqRv~lAraL--------------------------------------~~~----------------------------- 173 (260)
T 2ghi_A 161 RQRIAIARCL--------------------------------------LKD----------------------------- 173 (260)
T ss_dssp HHHHHHHHHH--------------------------------------HHC-----------------------------
T ss_pred HHHHHHHHHH--------------------------------------HcC-----------------------------
Confidence 9999865443 233
Q ss_pred hhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365 272 AMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS 348 (601)
Q Consensus 272 ~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~ 348 (601)
|++|||||||+|||+.++..+++.|+++ + +|+|||++||+++++. .||++++|.+|+++..+++
T Consensus 174 ------p~lllLDEPts~LD~~~~~~i~~~l~~l-----~-~~~tviivtH~~~~~~-~~d~i~~l~~G~i~~~g~~ 237 (260)
T 2ghi_A 174 ------PKIVIFDEATSSLDSKTEYLFQKAVEDL-----R-KNRTLIIIAHRLSTIS-SAESIILLNKGKIVEKGTH 237 (260)
T ss_dssp ------CSEEEEECCCCTTCHHHHHHHHHHHHHH-----T-TTSEEEEECSSGGGST-TCSEEEEEETTEEEEEECH
T ss_pred ------CCEEEEECccccCCHHHHHHHHHHHHHh-----c-CCCEEEEEcCCHHHHH-hCCEEEEEECCEEEEECCH
Confidence 5899999999999999999999999987 2 3799999999999886 5999999999999876654
No 46
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.6e-38 Score=336.69 Aligned_cols=202 Identities=22% Similarity=0.304 Sum_probs=167.9
Q ss_pred hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365 50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D 122 (601)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~ 122 (601)
+.++||+|.|+. ++..+|+|+||++.+ +||||| ||||| .++|+|+++ ++|+|.++|+++.. +
T Consensus 20 i~~~~l~~~y~~--~~~~~L~~vsl~i~~Ge~~~llGpsGs--GKSTL------Lr~iaGl~~-~~G~I~i~G~~i~~~~ 88 (390)
T 3gd7_A 20 MTVKDLTAKYTE--GGNAILENISFSISPGQRVGLLGRTGS--GKSTL------LSAFLRLLN-TEGEIQIDGVSWDSIT 88 (390)
T ss_dssp EEEEEEEEESSS--SSCCSEEEEEEEECTTCEEEEEESTTS--SHHHH------HHHHHTCSE-EEEEEEESSCBTTSSC
T ss_pred EEEEEEEEEecC--CCeEEeeceeEEEcCCCEEEEECCCCC--hHHHH------HHHHhCCCC-CCeEEEECCEECCcCC
Confidence 459999999842 345699999999988 999999 56654 579999998 99999999999865 3
Q ss_pred hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCcccc-----------CChHH
Q psy7365 123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANT-----------LSGGM 191 (601)
Q Consensus 123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----------LSgG~ 191 (601)
....++.+|||||++.+|+ +||+||+.++. ... ++++.++++.+||.+..++++.+ |||||
T Consensus 89 ~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~---~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGq 160 (390)
T 3gd7_A 89 LEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA---AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGH 160 (390)
T ss_dssp HHHHHHTEEEESCCCCCCS-EEHHHHHCTTC---CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHH
T ss_pred hHHHhCCEEEEcCCcccCc-cCHHHHhhhcc---ccC----HHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHH
Confidence 4456788999999999997 69999997432 122 35678899999999999999998 99999
Q ss_pred HhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHH
Q psy7365 192 QRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLF 271 (601)
Q Consensus 192 ~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 271 (601)
||||+||||| +.+
T Consensus 161 rQRvalARAL--------------------------------------~~~----------------------------- 173 (390)
T 3gd7_A 161 KQLMCLARSV--------------------------------------LSK----------------------------- 173 (390)
T ss_dssp HHHHHHHHHH--------------------------------------HTT-----------------------------
T ss_pred HHHHHHHHHH--------------------------------------hcC-----------------------------
Confidence 9999865543 233
Q ss_pred hhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccc
Q psy7365 272 AMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF 350 (601)
Q Consensus 272 ~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~l 350 (601)
|++|||||||||||+..+..+++.|+++ ..|+|+|++|||++.+ ..||||++|.+|+++..|++..
T Consensus 174 ------P~lLLLDEPts~LD~~~~~~l~~~l~~~------~~~~tvi~vtHd~e~~-~~aDri~vl~~G~i~~~g~~~e 239 (390)
T 3gd7_A 174 ------AKILLLDEPSAHLDPVTYQIIRRTLKQA------FADCTVILCEARIEAM-LECDQFLVIEENKVRQYDSILE 239 (390)
T ss_dssp ------CCEEEEESHHHHSCHHHHHHHHHHHHTT------TTTSCEEEECSSSGGG-TTCSEEEEEETTEEEEESSHHH
T ss_pred ------CCEEEEeCCccCCCHHHHHHHHHHHHHH------hCCCEEEEEEcCHHHH-HhCCEEEEEECCEEEEECCHHH
Confidence 5899999999999999999999999875 2479999999998654 5699999999999998887643
No 47
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.8e-36 Score=303.14 Aligned_cols=189 Identities=22% Similarity=0.337 Sum_probs=148.1
Q ss_pred hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCch
Q psy7365 50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDM 123 (601)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~ 123 (601)
..+++|++.|++ ++.++++|+||++.+ +||||| ||||| .++|+|+++|++|+|.++|
T Consensus 7 l~~~~l~~~y~~--~~~~il~~vsl~i~~Ge~~~i~G~nGs--GKSTL------l~~l~Gl~~p~~G~i~~~g------- 69 (229)
T 2pze_A 7 VVMENVTAFWEE--GGTPVLKDINFKIERGQLLAVAGSTGA--GKTSL------LMMIMGELEPSEGKIKHSG------- 69 (229)
T ss_dssp EEEEEEEECSST--TSCCSEEEEEEEEETTCEEEEECCTTS--SHHHH------HHHHTTSSCCSEEEEEECS-------
T ss_pred EEEEEEEEEeCC--CCceeeeeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCcCCccEEEECC-------
Confidence 458999999853 235699999999988 999999 56655 5799999999999999998
Q ss_pred HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcc-----------cCCccccCChHHH
Q psy7365 124 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHK-----------RTSLANTLSGGMQ 192 (601)
Q Consensus 124 ~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgG~~ 192 (601)
.+||+||+|.+|+. ||+||+.|+.. ... .+..++++.+++.+. .++++.+||||||
T Consensus 70 -----~i~~v~q~~~~~~~-tv~enl~~~~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqk 136 (229)
T 2pze_A 70 -----RISFCSQFSWIMPG-TIKENIIFGVS---YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQR 136 (229)
T ss_dssp -----CEEEECSSCCCCSB-CHHHHHHTTSC---CCH----HHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHH
T ss_pred -----EEEEEecCCcccCC-CHHHHhhccCC---cCh----HHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHH
Confidence 38999999998875 99999988532 111 122334444444322 3445689999999
Q ss_pred hhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHh
Q psy7365 193 RKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFA 272 (601)
Q Consensus 193 qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 272 (601)
||+++|||| +++
T Consensus 137 qrv~lAral--------------------------------------~~~------------------------------ 148 (229)
T 2pze_A 137 ARISLARAV--------------------------------------YKD------------------------------ 148 (229)
T ss_dssp HHHHHHHHH--------------------------------------HSC------------------------------
T ss_pred HHHHHHHHH--------------------------------------hcC------------------------------
Confidence 999865443 333
Q ss_pred hccCCCcEEEEecCCCCCCHHHHHHHHHHH-HHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365 273 MSFVPASTVILDEPTSGVDPYSRRSIWELL-IKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS 348 (601)
Q Consensus 273 ~~~~~~~~liLDEPtsgLD~~~~~~l~~~l-~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~ 348 (601)
|+++||||||+|||+.++..+++.+ .++ .+|+|||++||+++++. .||++++|.+|+++..+++
T Consensus 149 -----p~lllLDEPts~LD~~~~~~i~~~l~~~~------~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~ 213 (229)
T 2pze_A 149 -----ADLYLLDSPFGYLDVLTEKEIFESCVCKL------MANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTF 213 (229)
T ss_dssp -----CSEEEEESTTTTSCHHHHHHHHHHCCCCC------TTTSEEEEECCCHHHHH-HCSEEEEEETTEEEEEECH
T ss_pred -----CCEEEEECcccCCCHHHHHHHHHHHHHHh------hCCCEEEEEcCChHHHH-hCCEEEEEECCEEEEECCH
Confidence 5899999999999999999999864 443 24789999999999886 5999999999999876654
No 48
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=5.1e-36 Score=317.70 Aligned_cols=204 Identities=22% Similarity=0.288 Sum_probs=172.2
Q ss_pred ccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------ccccccccccccc----C-CcccccccccCC
Q psy7365 311 SLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDM----K-SAPQKSYIGYCP 378 (601)
Q Consensus 311 ~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~----~-~~~~~~~ig~v~ 378 (601)
.+.+.+++ +++++...-++.+++++... +|++++++ +..|+.++.+.++ . ....+++|||+|
T Consensus 13 ~y~~~~~L---~~vsl~i~~Ge~~~llGpsG---sGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vf 86 (359)
T 3fvq_A 13 SFQNTPVL---NDISLSLDPGEILFIIGASG---CGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLV 86 (359)
T ss_dssp EETTEEEE---EEEEEEECTTCEEEEEESTT---SSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEEC
T ss_pred EECCEEEE---EeeEEEEcCCCEEEEECCCC---chHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEe
Confidence 34455555 89999999999999998522 56665443 3445554445443 1 123457799999
Q ss_pred CCcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCC
Q psy7365 379 QFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPT 458 (601)
Q Consensus 379 Q~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPT 458 (601)
|++.+|+.+||+||+.|....++.+..+.+++++++++.++|.++.++++.+|||||||||+|||||+.+|++|||||||
T Consensus 87 Q~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPt 166 (359)
T 3fvq_A 87 QEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPF 166 (359)
T ss_dssp TTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred CCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 99999999999999999877667677777788999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365 459 SGMDPGARRFLWTCIERAV-SEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK 520 (601)
Q Consensus 459 sGLD~~~~~~i~~lL~~l~-~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~ 520 (601)
+|||+..+.++++.|+++. +.|+|+|++|||++++..+||||++|++|+++..|+++++...
T Consensus 167 s~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 167 SALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 9999999999999887764 5699999999999999999999999999999999999998653
No 49
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=5.1e-36 Score=318.06 Aligned_cols=195 Identities=21% Similarity=0.300 Sum_probs=170.5
Q ss_pred cchhHHHhcCCEEEEecCCccccccCcccc-------ccccccccccccccCCcc------cccccccCCCCcccCCCCC
Q psy7365 322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFL-------KNSFARGYYLSLDMKSAP------QKSYIGYCPQFDALNDRLT 388 (601)
Q Consensus 322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lL-------k~~~g~g~~igld~~~~~------~~~~ig~v~Q~~~l~~~lT 388 (601)
+++++...-++.+++++... +|+++++ +++.|+.++.+.++.... .+++|||+||++.+++.+|
T Consensus 45 ~~vsl~i~~Gei~~IiGpnG---aGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~T 121 (366)
T 3tui_C 45 NNVSLHVPAGQIYGVIGASG---AGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRT 121 (366)
T ss_dssp EEEEEEECTTCEEEEECCTT---SSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSC
T ss_pred EeeEEEEcCCCEEEEEcCCC---chHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCC
Confidence 89999999999999997522 5555543 334455555555543321 2568999999999999999
Q ss_pred HHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHH
Q psy7365 389 PREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRF 468 (601)
Q Consensus 389 v~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~ 468 (601)
|+||+.|....++.++.+.++++.++|+.+||.+..++++.+|||||||||+|||||+++|++|||||||+||||.+++.
T Consensus 122 V~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~ 201 (366)
T 3tui_C 122 VFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRS 201 (366)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHH
Confidence 99999998888888877788899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365 469 LWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 519 (601)
Q Consensus 469 i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~ 519 (601)
++++|++++++ |+|||++|||++++..+||||++|++|++++.|+++++..
T Consensus 202 i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~ 253 (366)
T 3tui_C 202 ILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 253 (366)
T ss_dssp HHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHS
T ss_pred HHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999754 9999999999999999999999999999999999998754
No 50
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=8.6e-36 Score=318.11 Aligned_cols=203 Identities=23% Similarity=0.355 Sum_probs=175.1
Q ss_pred ccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCc-ccccccccCCCCcc
Q psy7365 311 SLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSA-PQKSYIGYCPQFDA 382 (601)
Q Consensus 311 ~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~-~~~~~ig~v~Q~~~ 382 (601)
.+.+.+++ +++++...-++.+++++... +|++++++ +..|+.++.+.++... +.++.|||+||++.
T Consensus 12 ~yg~~~~L---~~vsl~i~~Ge~~~llGpsG---sGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~ 85 (381)
T 3rlf_A 12 AWGEVVVS---KDINLDIHEGEFVVFVGPSG---CGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYA 85 (381)
T ss_dssp EETTEEEE---EEEEEEECTTCEEEEECCTT---SSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCC
T ss_pred EECCEEEE---eeeEEEECCCCEEEEEcCCC---chHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCc
Confidence 34445555 89999999999999998532 56665443 3445555555544322 23567999999999
Q ss_pred cCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCC
Q psy7365 383 LNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462 (601)
Q Consensus 383 l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD 462 (601)
+|+.+||+||+.|..+.++.++.+.+++++++++.++|.+..++++.+|||||||||+|||||+.+|++|||||||+|||
T Consensus 86 l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD 165 (381)
T 3rlf_A 86 LYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165 (381)
T ss_dssp CCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSC
T ss_pred CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCC
Confidence 99999999999998888888887888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365 463 PGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 519 (601)
Q Consensus 463 ~~~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~ 519 (601)
+..+.++++.|+++.++ |+|+|++|||++++..+||||++|++|+++..|+++++.+
T Consensus 166 ~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~ 223 (381)
T 3rlf_A 166 AALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (381)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 99999999999999765 9999999999999999999999999999999999999865
No 51
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=3.8e-36 Score=302.30 Aligned_cols=195 Identities=23% Similarity=0.295 Sum_probs=149.7
Q ss_pred hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCch
Q psy7365 50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDM 123 (601)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~ 123 (601)
+.+++|++.|++ .+..+++|+||++.+ +||||| ||||| .++|+|+++|++|+|.++|
T Consensus 4 l~~~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~i~G~nGs--GKSTL------l~~l~Gl~~p~~G~I~~~g------- 66 (237)
T 2cbz_A 4 ITVRNATFTWAR--SDPPTLNGITFSIPEGALVAVVGQVGC--GKSSL------LSALLAEMDKVEGHVAIKG------- 66 (237)
T ss_dssp EEEEEEEEESCT--TSCCSEEEEEEEECTTCEEEEECSTTS--SHHHH------HHHHTTCSEEEEEEEEECS-------
T ss_pred EEEEEEEEEeCC--CCCceeeeeEEEECCCCEEEEECCCCC--CHHHH------HHHHhcCCCCCCceEEECC-------
Confidence 458999999853 134689999999988 999999 56655 5799999999999999998
Q ss_pred HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHH---HHHHcCCCc-----ccCCccccCChHHHhhh
Q psy7365 124 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISN---MIGDLGIPH-----KRTSLANTLSGGMQRKL 195 (601)
Q Consensus 124 ~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~---~l~~~gl~~-----~~~~~~~~LSgG~~qr~ 195 (601)
.+||+||+|.+ +++||+||+.|+... ..+. .+++.+ +++.+++.+ ..++++.+||||||||+
T Consensus 67 -----~i~~v~Q~~~~-~~~tv~enl~~~~~~---~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv 136 (237)
T 2cbz_A 67 -----SVAYVPQQAWI-QNDSLRENILFGCQL---EEPY-YRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRV 136 (237)
T ss_dssp -----CEEEECSSCCC-CSEEHHHHHHTTSCC---CTTH-HHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHH
T ss_pred -----EEEEEcCCCcC-CCcCHHHHhhCcccc---CHHH-HHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 38999999865 588999999886432 1211 112222 233344322 35788999999999999
Q ss_pred hchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhcc
Q psy7365 196 DNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSF 275 (601)
Q Consensus 196 ~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 275 (601)
++|||| +.+
T Consensus 137 ~lAraL--------------------------------------~~~--------------------------------- 145 (237)
T 2cbz_A 137 SLARAV--------------------------------------YSN--------------------------------- 145 (237)
T ss_dssp HHHHHH--------------------------------------HHC---------------------------------
T ss_pred HHHHHH--------------------------------------hcC---------------------------------
Confidence 865443 233
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365 276 VPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS 348 (601)
Q Consensus 276 ~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~ 348 (601)
|+++||||||+|||+.++..+++.|.+... ..+|+|||++||+++++. .||++++|.+|+++..+++
T Consensus 146 --p~lllLDEPts~LD~~~~~~i~~~l~~~~~---~~~~~tviivtH~~~~~~-~~d~v~~l~~G~i~~~g~~ 212 (237)
T 2cbz_A 146 --ADIYLFDDPLSAVDAHVGKHIFENVIGPKG---MLKNKTRILVTHSMSYLP-QVDVIIVMSGGKISEMGSY 212 (237)
T ss_dssp --CSEEEEESTTTTSCHHHHHHHHHHTTSTTS---TTTTSEEEEECSCSTTGG-GSSEEEEEETTEEEEEECH
T ss_pred --CCEEEEeCcccccCHHHHHHHHHHHHHHHh---hcCCCEEEEEecChHHHH-hCCEEEEEeCCEEEEeCCH
Confidence 589999999999999999999998852210 124899999999999875 7999999999999876654
No 52
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=7.6e-36 Score=336.35 Aligned_cols=205 Identities=21% Similarity=0.341 Sum_probs=166.0
Q ss_pred hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-
Q psy7365 49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT- 121 (601)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~- 121 (601)
.+.++||++.|++. +.++++|+||++.+ +||||| ||||| .++|+|+++|++|+|.++|.++..
T Consensus 341 ~i~~~~v~~~y~~~--~~~~l~~i~l~i~~G~~~~ivG~sGs--GKSTl------l~~l~g~~~p~~G~i~~~g~~~~~~ 410 (582)
T 3b5x_A 341 EVDVKDVTFTYQGK--EKPALSHVSFSIPQGKTVALVGRSGS--GKSTI------ANLFTRFYDVDSGSICLDGHDVRDY 410 (582)
T ss_pred eEEEEEEEEEcCCC--CccccccceEEECCCCEEEEECCCCC--CHHHH------HHHHhcCCCCCCCEEEECCEEhhhC
Confidence 35699999998532 25699999999988 999999 56655 579999999999999999999864
Q ss_pred chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCccc-----------CCccccCChH
Q psy7365 122 DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKR-----------TSLANTLSGG 190 (601)
Q Consensus 122 ~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgG 190 (601)
+....|+.+|||||+|.+|+. ||+||+.|+.. .+.+ ++++.++++.+|+.+.. ++...+||||
T Consensus 411 ~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~-~~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgG 484 (582)
T 3b5x_A 411 KLTNLRRHFALVSQNVHLFND-TIANNIAYAAE-GEYT----REQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGG 484 (582)
T ss_pred CHHHHhcCeEEEcCCCccccc-cHHHHHhccCC-CCCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHH
Confidence 345678899999999999875 99999998641 1222 24466677777765543 4456899999
Q ss_pred HHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHH
Q psy7365 191 MQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVL 270 (601)
Q Consensus 191 ~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~ 270 (601)
||||+++|||++ .+
T Consensus 485 q~qr~~iAral~--------------------------------------~~---------------------------- 498 (582)
T 3b5x_A 485 QRQRVAIARALL--------------------------------------RD---------------------------- 498 (582)
T ss_pred HHHHHHHHHHHH--------------------------------------cC----------------------------
Confidence 999998655433 33
Q ss_pred HhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcc
Q psy7365 271 FAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV 349 (601)
Q Consensus 271 ~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~ 349 (601)
|+++||||||++||+.++..+++.|+++ . +|+|+|++||+++.+. .||++++|++|+++..|+..
T Consensus 499 -------p~illlDEpts~LD~~~~~~i~~~l~~~-----~-~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~ 563 (582)
T 3b5x_A 499 -------APVLILDEATSALDTESERAIQAALDEL-----Q-KNKTVLVIAHRLSTIE-QADEILVVDEGEIIERGRHA 563 (582)
T ss_pred -------CCEEEEECccccCCHHHHHHHHHHHHHH-----c-CCCEEEEEecCHHHHH-hCCEEEEEECCEEEEECCHH
Confidence 5899999999999999999999999987 2 4899999999999886 69999999999998877643
No 53
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=2.9e-35 Score=300.11 Aligned_cols=202 Identities=20% Similarity=0.255 Sum_probs=168.1
Q ss_pred cCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC----------------c
Q psy7365 312 LSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS----------------A 368 (601)
Q Consensus 312 ~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~----------------~ 368 (601)
+.+..++ +++++...-++.+++++... +|++++++ +..|..++.+.+... .
T Consensus 16 y~~~~vl---~~vsl~i~~Ge~~~liG~nG---sGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~ 89 (262)
T 1b0u_A 16 YGGHEVL---KGVSLQARAGDVISIIGSSG---SGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLR 89 (262)
T ss_dssp ETTEEEE---EEEEEEECTTCEEEEECCTT---SSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHH
T ss_pred ECCEEEE---EeeEEEEcCCCEEEEECCCC---CCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHH
Confidence 3344554 88999999999999997522 55555432 334455455544421 1
Q ss_pred ccccccccCCCCcccCCCCCHHHHHHHhH-HhcCCChhHHHHHHHHHHHHcCCCcc-cccccCcCChHHHHHHHHHHHHh
Q psy7365 369 PQKSYIGYCPQFDALNDRLTPREHLEFYS-RVRNLPSVLLNTIVNESLNKFALGHY-SDREVRTLSGGNKRKLSTAIALL 446 (601)
Q Consensus 369 ~~~~~ig~v~Q~~~l~~~lTv~E~L~~~~-~~~g~~~~~~~~~~~~lLe~~~L~~~-~~~~~~~LSgGqkQRl~lA~AL~ 446 (601)
..++.+||+||++.+++.+||+||+.+.. ..++.+..+.+++++++++.++|.+. .++++.+|||||||||+||+||+
T Consensus 90 ~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~ 169 (262)
T 1b0u_A 90 LLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALA 169 (262)
T ss_dssp HHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHh
Confidence 12467999999999999999999999854 44555555556778999999999988 99999999999999999999999
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365 447 GNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 519 (601)
Q Consensus 447 ~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~ 519 (601)
++|++|||||||+|||+.+++.++++|++++++|+|||++|||++++..+|||+++|++|++++.|+++++.+
T Consensus 170 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 242 (262)
T 1b0u_A 170 MEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFG 242 (262)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999998779999999999999999999999999999999999999865
No 54
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=3.9e-35 Score=299.43 Aligned_cols=203 Identities=21% Similarity=0.284 Sum_probs=169.0
Q ss_pred ccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccC--C---cccccccccCC
Q psy7365 311 SLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMK--S---APQKSYIGYCP 378 (601)
Q Consensus 311 ~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~--~---~~~~~~ig~v~ 378 (601)
.+.+++++ +++++...-++.+++++... +|++++++ +..|..++.+.+.. . ...++++||+|
T Consensus 33 ~y~~~~vL---~~vsl~i~~Gei~~liG~NG---sGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~ 106 (263)
T 2olj_A 33 SFGSLEVL---KGINVHIREGEVVVVIGPSG---SGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVF 106 (263)
T ss_dssp EETTEEEE---EEEEEEECTTCEEEEECCTT---SSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEEC
T ss_pred EECCEEEE---EeeEEEEcCCCEEEEEcCCC---CcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEe
Confidence 34444555 88999999999999997422 55555433 33445544454432 1 11246799999
Q ss_pred CCcccCCCCCHHHHHHHhH-HhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECC
Q psy7365 379 QFDALNDRLTPREHLEFYS-RVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEP 457 (601)
Q Consensus 379 Q~~~l~~~lTv~E~L~~~~-~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEP 457 (601)
|++.+++.+||+||+.|.. ..++.+..+..++++++++.++|.+..++++.+|||||||||+||+||+.+|++||||||
T Consensus 107 Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEP 186 (263)
T 2olj_A 107 QRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEP 186 (263)
T ss_dssp SSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred CCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 9999999999999999864 455655555567789999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365 458 TSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 519 (601)
Q Consensus 458 TsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~ 519 (601)
|+|||+.+++.++++|++++++|+|||++|||+++++.+|||+++|++|++++.|+++++.+
T Consensus 187 ts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
T 2olj_A 187 TSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 248 (263)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999998779999999999999999999999999999999999999865
No 55
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.4e-35 Score=335.03 Aligned_cols=207 Identities=24% Similarity=0.316 Sum_probs=167.2
Q ss_pred hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365 50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D 122 (601)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~ 122 (601)
+.++||++.|++. .+.++++|+||++.+ +||||| ||||| .++|+|+++|++|+|.++|.++.. +
T Consensus 342 i~~~~v~~~y~~~-~~~~vl~~isl~i~~G~~~~ivG~sGs--GKSTL------l~~l~g~~~p~~G~i~~~g~~i~~~~ 412 (595)
T 2yl4_A 342 LEFKNVHFAYPAR-PEVPIFQDFSLSIPSGSVTALVGPSGS--GKSTV------LSLLLRLYDPASGTISLDGHDIRQLN 412 (595)
T ss_dssp EEEEEEEEECSSC-TTSEEEEEEEEEECTTCEEEEECCTTS--SSTHH------HHHHTTSSCCSEEEEEETTEETTTBC
T ss_pred EEEEEEEEEeCCC-CCCccccceEEEEcCCCEEEEECCCCC--CHHHH------HHHHhcCcCCCCcEEEECCEEhhhCC
Confidence 4599999998532 135699999999988 999999 67765 679999999999999999999865 3
Q ss_pred hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhc-CCChHHHHHHHHHHHHHcCCCcc-----------cCCccccCChH
Q psy7365 123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK-QVPKDLAQLEISNMIGDLGIPHK-----------RTSLANTLSGG 190 (601)
Q Consensus 123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgG 190 (601)
....|+.+|||||+|.+|+ .||+||+.|+.... +.+ ++++.++++.+|+.+. .++.+.+||||
T Consensus 413 ~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgG 487 (595)
T 2yl4_A 413 PVWLRSKIGTVSQEPILFS-CSIAENIAYGADDPSSVT----AEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGG 487 (595)
T ss_dssp HHHHHHSEEEECSSCCCCS-SBHHHHHHTTSSSTTTSC----HHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHH
T ss_pred HHHHHhceEEEccCCcccC-CCHHHHHhhcCCCccccC----HHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHH
Confidence 4556788999999999986 59999999864321 122 3456777888876433 23445899999
Q ss_pred HHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHH
Q psy7365 191 MQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVL 270 (601)
Q Consensus 191 ~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~ 270 (601)
||||+++|||++ .+
T Consensus 488 q~qrv~iAral~--------------------------------------~~---------------------------- 501 (595)
T 2yl4_A 488 QKQRIAIARALL--------------------------------------KN---------------------------- 501 (595)
T ss_dssp HHHHHHHHHHHH--------------------------------------HC----------------------------
T ss_pred HHHHHHHHHHHH--------------------------------------cC----------------------------
Confidence 999998655433 33
Q ss_pred HhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccc
Q psy7365 271 FAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF 350 (601)
Q Consensus 271 ~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~l 350 (601)
|+++||||||++||+.++..+++.|+++. +|+|+|++||+++.+. .||++++|++|+++..|+...
T Consensus 502 -------p~illlDEpts~LD~~~~~~i~~~l~~~~------~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 567 (595)
T 2yl4_A 502 -------PKILLLDEATSALDAENEYLVQEALDRLM------DGRTVLVIAHRLSTIK-NANMVAVLDQGKITEYGKHEE 567 (595)
T ss_dssp -------CSEEEEECCCSSCCHHHHHHHHHHHHHHH------TTSEEEEECCCHHHHH-HSSEEEEEETTEEEEEECSCC
T ss_pred -------CCEEEEECcccCCCHHHHHHHHHHHHHHh------cCCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCHHH
Confidence 48999999999999999999999999872 3799999999999886 599999999999988776543
No 56
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=4.7e-35 Score=297.66 Aligned_cols=203 Identities=26% Similarity=0.352 Sum_probs=170.2
Q ss_pred CCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC--cccccccccCCCCccc
Q psy7365 313 SGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS--APQKSYIGYCPQFDAL 383 (601)
Q Consensus 313 ~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~--~~~~~~ig~v~Q~~~l 383 (601)
.++.++ +++++...-++.+++++... +|++++++ +..|..++.+.+... ...++.+||+||++.+
T Consensus 26 ~~~~vl---~~vsl~i~~Gei~~l~G~NG---sGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l 99 (256)
T 1vpl_A 26 GKKEIL---KGISFEIEEGEIFGLIGPNG---AGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGA 99 (256)
T ss_dssp TTEEEE---EEEEEEECTTCEEEEECCTT---SSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCC
T ss_pred CCEEEE---EeeEEEEcCCcEEEEECCCC---CCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCC
Confidence 344444 88899889999999997522 56655443 333444444444322 1235679999999999
Q ss_pred CCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCH
Q psy7365 384 NDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDP 463 (601)
Q Consensus 384 ~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~ 463 (601)
++.+||+||+.++..+++.+..+.+++++++++.++|.+..++++.+|||||||||+||+||+.+|++|||||||+|||+
T Consensus 100 ~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~ 179 (256)
T 1vpl_A 100 YRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDV 179 (256)
T ss_dssp CTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCH
T ss_pred CCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCH
Confidence 99999999999977666666555566789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHHh
Q psy7365 464 GARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKY 521 (601)
Q Consensus 464 ~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~~ 521 (601)
.+++.++++|++++++|+|||++|||+++++.+|||+++|++|++++.|+++++.+.+
T Consensus 180 ~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 237 (256)
T 1vpl_A 180 LNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERY 237 (256)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHHhc
Confidence 9999999999999878999999999999999999999999999999999999997654
No 57
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=2.4e-35 Score=302.76 Aligned_cols=195 Identities=19% Similarity=0.279 Sum_probs=166.9
Q ss_pred cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC-----cccccccccCCCCcc-cCCCCC
Q psy7365 322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS-----APQKSYIGYCPQFDA-LNDRLT 388 (601)
Q Consensus 322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~-----~~~~~~ig~v~Q~~~-l~~~lT 388 (601)
+++++...-++.+++++... +|++++++ +..|..++.|.++.. ...+++|||+||++. .++.+|
T Consensus 25 ~~isl~i~~Ge~~~iiGpnG---sGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~t 101 (275)
T 3gfo_A 25 KGINMNIKRGEVTAILGGNG---VGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSAS 101 (275)
T ss_dssp EEEEEEEETTSEEEEECCTT---SSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSB
T ss_pred EeeEEEEcCCCEEEEECCCC---CCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCc
Confidence 89999999999999998522 55555433 344555555554421 123577999999973 445789
Q ss_pred HHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHH
Q psy7365 389 PREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRF 468 (601)
Q Consensus 389 v~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~ 468 (601)
|+||+.|....++.+..+..++++++++.++|.+..++++.+|||||||||+||+||+.+|++|||||||+||||.+++.
T Consensus 102 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~ 181 (275)
T 3gfo_A 102 VYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSE 181 (275)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHH
Confidence 99999998877777777777889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-hCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365 469 LWTCIERAV-SEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 519 (601)
Q Consensus 469 i~~lL~~l~-~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~ 519 (601)
++++|++++ ++|+|||++|||++++..+||||++|++|++++.|+++++..
T Consensus 182 i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 182 IMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp HHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred HHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 999999997 569999999999999999999999999999999999999854
No 58
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=5.8e-35 Score=309.54 Aligned_cols=195 Identities=22% Similarity=0.341 Sum_probs=167.1
Q ss_pred cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC-cccccccccCCCCcccCCCCCHHHHH
Q psy7365 322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS-APQKSYIGYCPQFDALNDRLTPREHL 393 (601)
Q Consensus 322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~-~~~~~~ig~v~Q~~~l~~~lTv~E~L 393 (601)
+++++...-++.+++++... +|++++++ +..|+.++.+.++.. .+.++.+||+||++.+|+.+||+||+
T Consensus 32 ~~vsl~i~~Ge~~~llGpnG---sGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni 108 (355)
T 1z47_A 32 RGVSFQIREGEMVGLLGPSG---SGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNV 108 (355)
T ss_dssp EEEEEEEETTCEEEEECSTT---SSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHH
T ss_pred eeeEEEECCCCEEEEECCCC---CcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHH
Confidence 77788788888888887522 56665543 334444444444322 23457799999999999999999999
Q ss_pred HHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHH
Q psy7365 394 EFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCI 473 (601)
Q Consensus 394 ~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL 473 (601)
.|....++.+..+.+++++++++.++|.++.++++.+|||||||||+|||||+.+|++|||||||+|||+.+++++++.|
T Consensus 109 ~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l 188 (355)
T 1z47_A 109 SFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFV 188 (355)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 99877777776666788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365 474 ERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 519 (601)
Q Consensus 474 ~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~ 519 (601)
+++.++ |+|+|++|||++++..+||||++|++|+++..|+++++.+
T Consensus 189 ~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~ 235 (355)
T 1z47_A 189 RQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYE 235 (355)
T ss_dssp HHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999765 9999999999999999999999999999999999999864
No 59
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=5.8e-35 Score=311.73 Aligned_cols=202 Identities=20% Similarity=0.328 Sum_probs=171.3
Q ss_pred cCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC-------cccccccccC
Q psy7365 312 LSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS-------APQKSYIGYC 377 (601)
Q Consensus 312 ~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~-------~~~~~~ig~v 377 (601)
+.+.+++ +++++...-++.+++++... +|++++++ +..|+.++.+.++.. .+.++++||+
T Consensus 13 y~~~~vl---~~vsl~i~~Ge~~~llGpnG---sGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v 86 (372)
T 1g29_1 13 FGEVTAV---REMSLEVKDGEFMILLGPSG---CGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMV 86 (372)
T ss_dssp ETTEEEE---EEEEEEEETTCEEEEECSTT---SSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEE
T ss_pred ECCEEEE---eeeEEEEcCCCEEEEECCCC---cHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEE
Confidence 3344555 88999889999999998532 56665443 334444444433321 2235779999
Q ss_pred CCCcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECC
Q psy7365 378 PQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEP 457 (601)
Q Consensus 378 ~Q~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEP 457 (601)
||++.+|+++||+||+.|....++.+..+.+++++++++.++|.++.++++.+|||||||||+|||||+.+|++||||||
T Consensus 87 ~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP 166 (372)
T 1g29_1 87 FQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEP 166 (372)
T ss_dssp CSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECT
T ss_pred eCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 99999999999999999988777777666677899999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365 458 TSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 519 (601)
Q Consensus 458 TsGLD~~~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~ 519 (601)
|+|||+..+.++++.|+++.++ |+|+|++|||++++..+||||++|++|+++..|+++++.+
T Consensus 167 ~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~ 229 (372)
T 1g29_1 167 LSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (372)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 9999999999999999998765 9999999999999999999999999999999999999864
No 60
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1e-35 Score=335.29 Aligned_cols=205 Identities=20% Similarity=0.305 Sum_probs=165.9
Q ss_pred hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-
Q psy7365 49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT- 121 (601)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~- 121 (601)
.+.++||++.|++. +.++++|+||++.+ +||||| ||||| .++|+|+++|++|+|.++|.++..
T Consensus 341 ~i~~~~v~~~y~~~--~~~~l~~v~~~i~~G~~~~ivG~sGs--GKSTL------l~~l~g~~~p~~G~i~~~g~~~~~~ 410 (582)
T 3b60_A 341 DLEFRNVTFTYPGR--EVPALRNINLKIPAGKTVALVGRSGS--GKSTI------ASLITRFYDIDEGHILMDGHDLREY 410 (582)
T ss_dssp CEEEEEEEECSSSS--SCCSEEEEEEEECTTCEEEEEECTTS--SHHHH------HHHHTTTTCCSEEEEEETTEETTTB
T ss_pred cEEEEEEEEEcCCC--CCccccceeEEEcCCCEEEEECCCCC--CHHHH------HHHHhhccCCCCCeEEECCEEcccc
Confidence 35699999998531 25699999999988 999999 56655 579999999999999999999865
Q ss_pred chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcc-----------cCCccccCChH
Q psy7365 122 DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHK-----------RTSLANTLSGG 190 (601)
Q Consensus 122 ~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgG 190 (601)
+....|+.+|||||+|.+|+. ||+||+.|+.. .+.+ ++++.++++.+|+.+. .++...+||||
T Consensus 411 ~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~-~~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgG 484 (582)
T 3b60_A 411 TLASLRNQVALVSQNVHLFND-TVANNIAYART-EEYS----REQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGG 484 (582)
T ss_dssp CHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTT-SCCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHH
T ss_pred CHHHHHhhCeEEccCCcCCCC-CHHHHHhccCC-CCCC----HHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHH
Confidence 345677889999999999875 99999998641 1222 2345666777766543 44566899999
Q ss_pred HHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHH
Q psy7365 191 MQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVL 270 (601)
Q Consensus 191 ~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~ 270 (601)
||||+++|||++ ++
T Consensus 485 q~qrl~iAral~--------------------------------------~~---------------------------- 498 (582)
T 3b60_A 485 QRQRIAIARALL--------------------------------------RD---------------------------- 498 (582)
T ss_dssp HHHHHHHHHHHH--------------------------------------HC----------------------------
T ss_pred HHHHHHHHHHHH--------------------------------------hC----------------------------
Confidence 999998655433 33
Q ss_pred HhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcc
Q psy7365 271 FAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV 349 (601)
Q Consensus 271 ~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~ 349 (601)
|+++|||||||+||+.++..+++.|+++. +|+|+|++||+++.+. .||++++|++|+++..|+..
T Consensus 499 -------p~illlDEpts~LD~~~~~~i~~~l~~~~------~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~ 563 (582)
T 3b60_A 499 -------SPILILDEATSALDTESERAIQAALDELQ------KNRTSLVIAHRLSTIE-QADEIVVVEDGIIVERGTHS 563 (582)
T ss_dssp -------CSEEEEETTTSSCCHHHHHHHHHHHHHHH------TTSEEEEECSCGGGTT-TCSEEEEEETTEEEEEECHH
T ss_pred -------CCEEEEECccccCCHHHHHHHHHHHHHHh------CCCEEEEEeccHHHHH-hCCEEEEEECCEEEEecCHH
Confidence 48999999999999999999999999872 3899999999999875 69999999999998877653
No 61
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1.5e-35 Score=333.80 Aligned_cols=204 Identities=25% Similarity=0.324 Sum_probs=164.0
Q ss_pred hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365 50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D 122 (601)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~ 122 (601)
+.++||++.|++ ...++++|+||++.+ +||||| ||||| .++|+|+++|++|+|.++|.++.. +
T Consensus 340 i~~~~v~~~y~~--~~~~~l~~isl~i~~G~~~~ivG~sGs--GKSTl------l~~l~g~~~p~~G~i~~~g~~~~~~~ 409 (578)
T 4a82_A 340 IDIDHVSFQYND--NEAPILKDINLSIEKGETVAFVGMSGG--GKSTL------INLIPRFYDVTSGQILIDGHNIKDFL 409 (578)
T ss_dssp EEEEEEEECSCS--SSCCSEEEEEEEECTTCEEEEECSTTS--SHHHH------HTTTTTSSCCSEEEEEETTEEGGGSC
T ss_pred EEEEEEEEEcCC--CCCcceeeeEEEECCCCEEEEECCCCC--hHHHH------HHHHhcCCCCCCcEEEECCEEhhhCC
Confidence 458999999854 345699999999988 999999 56655 579999999999999999999864 4
Q ss_pred hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCC-----------CcccCCccccCChHH
Q psy7365 123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGI-----------PHKRTSLANTLSGGM 191 (601)
Q Consensus 123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LSgG~ 191 (601)
....|+.+|||||+|.+|+. ||+||+.|+... .+. +++.++++..++ ....++...+|||||
T Consensus 410 ~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~~~--~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq 482 (578)
T 4a82_A 410 TGSLRNQIGLVQQDNILFSD-TVKENILLGRPT--ATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQ 482 (578)
T ss_dssp HHHHHHTEEEECSSCCCCSS-BHHHHHGGGCSS--CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHH
T ss_pred HHHHhhheEEEeCCCccCcc-cHHHHHhcCCCC--CCH----HHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHH
Confidence 45678889999999999876 999999876321 222 234445555544 334456667999999
Q ss_pred HhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHH
Q psy7365 192 QRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLF 271 (601)
Q Consensus 192 ~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 271 (601)
|||+++|||++ ++
T Consensus 483 ~Qrv~lAral~--------------------------------------~~----------------------------- 495 (578)
T 4a82_A 483 KQRLSIARIFL--------------------------------------NN----------------------------- 495 (578)
T ss_dssp HHHHHHHHHHH--------------------------------------HC-----------------------------
T ss_pred HHHHHHHHHHH--------------------------------------cC-----------------------------
Confidence 99998665443 33
Q ss_pred hhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccc
Q psy7365 272 AMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF 350 (601)
Q Consensus 272 ~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~l 350 (601)
|+++|||||||+||+.+...+.+.++++ .+|+|+|++||+++.+. .||++++|++|+++..|+...
T Consensus 496 ------p~illlDEpts~LD~~~~~~i~~~l~~~------~~~~t~i~itH~l~~~~-~~d~i~~l~~G~i~~~g~~~e 561 (578)
T 4a82_A 496 ------PPILILDEATSALDLESESIIQEALDVL------SKDRTTLIVAHRLSTIT-HADKIVVIENGHIVETGTHRE 561 (578)
T ss_dssp ------CSEEEEESTTTTCCHHHHHHHHHHHHHH------TTTSEEEEECSSGGGTT-TCSEEEEEETTEEEEEECHHH
T ss_pred ------CCEEEEECccccCCHHHHHHHHHHHHHH------cCCCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCHHH
Confidence 4899999999999999999999999887 24789999999999986 599999999999998886543
No 62
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=7.3e-35 Score=309.68 Aligned_cols=202 Identities=21% Similarity=0.325 Sum_probs=171.9
Q ss_pred cCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCc-ccccccccCCCCccc
Q psy7365 312 LSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSA-PQKSYIGYCPQFDAL 383 (601)
Q Consensus 312 ~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~-~~~~~ig~v~Q~~~l 383 (601)
+.+.+++ +++++...-++.+++++... +|++++++ +..|+.++.+.++... +.++.+||+||++.+
T Consensus 13 y~~~~vl---~~vsl~i~~Ge~~~llGpnG---sGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l 86 (362)
T 2it1_A 13 FGNFTAL---NNINLKIKDGEFMALLGPSG---SGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWAL 86 (362)
T ss_dssp SSSSEEE---EEEEEEECTTCEEEEECCTT---SSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCC
T ss_pred ECCEEEE---EeeEEEECCCCEEEEECCCC---chHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCccc
Confidence 3345555 88999888999999997522 56665543 3344444445444322 235679999999999
Q ss_pred CCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCH
Q psy7365 384 NDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDP 463 (601)
Q Consensus 384 ~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~ 463 (601)
|+++||+||+.|....++.+..+.+++++++++.++|.++.++++.+|||||||||+|||||+.+|++|||||||+|||+
T Consensus 87 ~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~ 166 (362)
T 2it1_A 87 YPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA 166 (362)
T ss_dssp CTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCH
T ss_pred CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCH
Confidence 99999999999987777777666677899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365 464 GARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 519 (601)
Q Consensus 464 ~~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~ 519 (601)
..+.++++.|+++.++ |+|+|++|||++++..+||||++|++|+++..|+++++.+
T Consensus 167 ~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~ 223 (362)
T 2it1_A 167 LLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYY 223 (362)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999755 9999999999999999999999999999999999999864
No 63
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.2e-35 Score=334.99 Aligned_cols=208 Identities=24% Similarity=0.366 Sum_probs=166.2
Q ss_pred hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365 50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D 122 (601)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~ 122 (601)
+.++|+++.|+. .+.++++|+||++.+ +||||| ||||| .++|+|+++|++|+|.++|.++.. +
T Consensus 342 i~~~~v~~~y~~--~~~~~l~~isl~i~~Ge~~~ivG~sGs--GKSTl------l~~l~g~~~~~~G~i~i~g~~i~~~~ 411 (587)
T 3qf4_A 342 VSFENVEFRYFE--NTDPVLSGVNFSVKPGSLVAVLGETGS--GKSTL------MNLIPRLIDPERGRVEVDELDVRTVK 411 (587)
T ss_dssp EEEEEEEECSSS--SSCCSEEEEEEEECTTCEEEEECSSSS--SHHHH------HHTTTTSSCCSEEEEEESSSBGGGBC
T ss_pred EEEEEEEEEcCC--CCCcceeceEEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCccCCCcEEEECCEEcccCC
Confidence 559999999753 345799999999988 999999 56654 579999999999999999999864 3
Q ss_pred hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHH-----HHHHHHHc--CCCcccCCccccCChHHHhhh
Q psy7365 123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE-----ISNMIGDL--GIPHKRTSLANTLSGGMQRKL 195 (601)
Q Consensus 123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LSgG~~qr~ 195 (601)
....|+.+|||||+|.+|+. ||+||+.|+... .+.++..+. +.+.++.+ |++...++.+.+||||||||+
T Consensus 412 ~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv 488 (587)
T 3qf4_A 412 LKDLRGHISAVPQETVLFSG-TIKENLKWGRED--ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRL 488 (587)
T ss_dssp HHHHHHHEEEECSSCCCCSE-EHHHHHTTTCSS--CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHH
T ss_pred HHHHHhheEEECCCCcCcCc-cHHHHHhccCCC--CCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHH
Confidence 45678889999999999865 999999876432 222222211 12233333 556667888999999999999
Q ss_pred hchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhcc
Q psy7365 196 DNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSF 275 (601)
Q Consensus 196 ~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 275 (601)
++|||++ ++
T Consensus 489 ~lARal~--------------------------------------~~--------------------------------- 497 (587)
T 3qf4_A 489 SIARALV--------------------------------------KK--------------------------------- 497 (587)
T ss_dssp HHHHHHH--------------------------------------TC---------------------------------
T ss_pred HHHHHHH--------------------------------------cC---------------------------------
Confidence 8655433 33
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccc
Q psy7365 276 VPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF 350 (601)
Q Consensus 276 ~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~l 350 (601)
|+++|||||||+||+.+.+.+.+.|+++ .+|+|+|++||+++.+. .|||+++|++|+++..|+...
T Consensus 498 --p~illlDEpts~LD~~~~~~i~~~l~~~------~~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~e 563 (587)
T 3qf4_A 498 --PKVLILDDCTSSVDPITEKRILDGLKRY------TKGCTTFIITQKIPTAL-LADKILVLHEGKVAGFGTHKE 563 (587)
T ss_dssp --CSEEEEESCCTTSCHHHHHHHHHHHHHH------STTCEEEEEESCHHHHT-TSSEEEEEETTEEEEEECHHH
T ss_pred --CCEEEEECCcccCCHHHHHHHHHHHHHh------CCCCEEEEEecChHHHH-hCCEEEEEECCEEEEECCHHH
Confidence 4899999999999999999999999886 25899999999999875 899999999999998886543
No 64
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=4.7e-35 Score=310.84 Aligned_cols=202 Identities=20% Similarity=0.330 Sum_probs=169.7
Q ss_pred cCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCc-ccccccccCCCCccc
Q psy7365 312 LSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSA-PQKSYIGYCPQFDAL 383 (601)
Q Consensus 312 ~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~-~~~~~ig~v~Q~~~l 383 (601)
+.+.+++ +++++...-++.+++++... +|++++++ +..|+.++.+.++... +.++++||+||++.+
T Consensus 13 y~~~~vl---~~vsl~i~~Ge~~~llGpnG---sGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l 86 (359)
T 2yyz_A 13 FGKVKAV---DGVSFEVKDGEFVALLGPSG---CGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYAL 86 (359)
T ss_dssp ETTEEEE---EEEEEEECTTCEEEEECSTT---SSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCC
T ss_pred ECCEEEE---eeeEEEEcCCCEEEEEcCCC---chHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCccc
Confidence 3344555 88999888999999998532 56665543 3345554555444322 235679999999999
Q ss_pred CCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCH
Q psy7365 384 NDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDP 463 (601)
Q Consensus 384 ~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~ 463 (601)
|+++||+||+.|..+.++.+..+.+++++++++.++|.++.++++.+|||||||||+|||||+.+|++|||||||+|||+
T Consensus 87 ~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~ 166 (359)
T 2yyz_A 87 YPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDA 166 (359)
T ss_dssp CTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCH
T ss_pred CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH
Confidence 99999999999976665555444556789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365 464 GARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 519 (601)
Q Consensus 464 ~~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~ 519 (601)
..++.+++.|+++.++ |+|+|++|||++++..+||||++|++|+++..|+++++.+
T Consensus 167 ~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 167 NLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYD 223 (359)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999998765 9999999999999999999999999999999999999864
No 65
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.4e-35 Score=335.18 Aligned_cols=203 Identities=26% Similarity=0.371 Sum_probs=164.2
Q ss_pred hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365 50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D 122 (601)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~ 122 (601)
+.++||++.|++ +.++++|+||++.+ +||||| ||||| .++|+|+++|++|+|.++|.++.. +
T Consensus 355 i~~~~v~~~y~~---~~~~l~~isl~i~~G~~~~ivG~sGs--GKSTl------l~~l~g~~~p~~G~i~~~g~~i~~~~ 423 (598)
T 3qf4_B 355 IEFKNVWFSYDK---KKPVLKDITFHIKPGQKVALVGPTGS--GKTTI------VNLLMRFYDVDRGQILVDGIDIRKIK 423 (598)
T ss_dssp EEEEEEECCSSS---SSCSCCSEEEECCTTCEEEEECCTTS--STTHH------HHHHTTSSCCSEEEEEETTEEGGGSC
T ss_pred EEEEEEEEECCC---CCccccceEEEEcCCCEEEEECCCCC--cHHHH------HHHHhcCcCCCCeEEEECCEEhhhCC
Confidence 459999999853 35699999999988 999999 67765 579999999999999999999864 4
Q ss_pred hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccC-----------CccccCChHH
Q psy7365 123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRT-----------SLANTLSGGM 191 (601)
Q Consensus 123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgG~ 191 (601)
....|+.+|||||+|.+|+ .||+||+.|+.. +.+.+ ++.++++.+++.+..+ +...+|||||
T Consensus 424 ~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq 496 (598)
T 3qf4_B 424 RSSLRSSIGIVLQDTILFS-TTVKENLKYGNP--GATDE----EIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQ 496 (598)
T ss_dssp HHHHHHHEEEECTTCCCCS-SBHHHHHHSSST--TCCTT----HHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHH
T ss_pred HHHHHhceEEEeCCCcccc-ccHHHHHhcCCC--CCCHH----HHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHH
Confidence 5567889999999999885 599999987632 22222 3445555555544433 3447999999
Q ss_pred HhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHH
Q psy7365 192 QRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLF 271 (601)
Q Consensus 192 ~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 271 (601)
|||+++|||++ .+
T Consensus 497 ~Qrv~iAral~--------------------------------------~~----------------------------- 509 (598)
T 3qf4_B 497 RQLLAITRAFL--------------------------------------AN----------------------------- 509 (598)
T ss_dssp HHHHHHHHHHH--------------------------------------TC-----------------------------
T ss_pred HHHHHHHHHHh--------------------------------------cC-----------------------------
Confidence 99998655433 33
Q ss_pred hhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccc
Q psy7365 272 AMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF 350 (601)
Q Consensus 272 ~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~l 350 (601)
|+++|||||||+||+.+...+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|+++..|+...
T Consensus 510 ------p~illlDEpts~LD~~~~~~i~~~l~~~~------~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~ 575 (598)
T 3qf4_B 510 ------PKILILDEATSNVDTKTEKSIQAAMWKLM------EGKTSIIIAHRLNTIKN-ADLIIVLRDGEIVEMGKHDE 575 (598)
T ss_dssp ------CSEEEECCCCTTCCHHHHHHHHHHHHHHH------TTSEEEEESCCTTHHHH-CSEEEEECSSSEEECSCHHH
T ss_pred ------CCEEEEECCccCCCHHHHHHHHHHHHHHc------CCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHH
Confidence 48999999999999999999999999872 48999999999999865 99999999999998887543
No 66
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=4.9e-35 Score=310.37 Aligned_cols=195 Identities=23% Similarity=0.337 Sum_probs=167.1
Q ss_pred cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC------cccccccccCCCCcccCCCCC
Q psy7365 322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS------APQKSYIGYCPQFDALNDRLT 388 (601)
Q Consensus 322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~------~~~~~~ig~v~Q~~~l~~~lT 388 (601)
+++++...-++.+++++... +|++++++ +..|+.++.+.++.. .+.++++||+||++.+|+++|
T Consensus 22 ~~vsl~i~~Ge~~~llGpnG---sGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~lt 98 (353)
T 1oxx_K 22 DNVNINIENGERFGILGPSG---AGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLT 98 (353)
T ss_dssp EEEEEEECTTCEEEEECSCH---HHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSC
T ss_pred eceEEEECCCCEEEEECCCC---CcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCC
Confidence 78888888899999998532 56665443 334444444433321 234678999999999999999
Q ss_pred HHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHH
Q psy7365 389 PREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRF 468 (601)
Q Consensus 389 v~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~ 468 (601)
|+||+.|....++.+..+.+++++++++.++|.++.++++.+|||||||||+|||||+.+|++|||||||+|||+..+.+
T Consensus 99 v~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~ 178 (353)
T 1oxx_K 99 AFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDS 178 (353)
T ss_dssp HHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHH
Confidence 99999998766666666667789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365 469 LWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 519 (601)
Q Consensus 469 i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~ 519 (601)
+++.|+++.++ |+|+|++|||++++..+||||++|++|+++..|+++++.+
T Consensus 179 l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~ 230 (353)
T 1oxx_K 179 ARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (353)
T ss_dssp HHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999755 9999999999999999999999999999999999999854
No 67
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.9e-34 Score=287.48 Aligned_cols=188 Identities=21% Similarity=0.261 Sum_probs=158.8
Q ss_pred cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCcc------c-ccccccCCCCcccCCCC
Q psy7365 322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSAP------Q-KSYIGYCPQFDALNDRL 387 (601)
Q Consensus 322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~~------~-~~~ig~v~Q~~~l~~~l 387 (601)
+++++...-++.+++++... +|++++++ +..|+.++.+.+..... . ++.+||+||++.+++.+
T Consensus 21 ~~vsl~i~~Ge~~~iiG~nG---sGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~ 97 (224)
T 2pcj_A 21 KGISLSVKKGEFVSIIGASG---SGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPEL 97 (224)
T ss_dssp EEEEEEEETTCEEEEEECTT---SCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTS
T ss_pred eeeEEEEcCCCEEEEECCCC---CCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCC
Confidence 88999999999999997522 55555433 33444444454443211 1 25699999999999999
Q ss_pred CHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHH
Q psy7365 388 TPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARR 467 (601)
Q Consensus 388 Tv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~ 467 (601)
||+||+.+....++.+..+..+++.++++.++|.+..++++.+|||||||||+||+||+++|++|||||||+|||+.+++
T Consensus 98 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~ 177 (224)
T 2pcj_A 98 TALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTK 177 (224)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHH
T ss_pred CHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHH
Confidence 99999998776666655555677899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecC
Q psy7365 468 FLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 513 (601)
Q Consensus 468 ~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~ 513 (601)
.++++|++++++|+|||++|||++++ .+|||+++|++|++++.|+
T Consensus 178 ~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 178 RVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEee
Confidence 99999999987799999999999998 8999999999999999886
No 68
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=9.1e-35 Score=309.97 Aligned_cols=202 Identities=20% Similarity=0.320 Sum_probs=163.8
Q ss_pred cCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCc-ccccccccCCCCccc
Q psy7365 312 LSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSA-PQKSYIGYCPQFDAL 383 (601)
Q Consensus 312 ~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~-~~~~~ig~v~Q~~~l 383 (601)
+.+.+++ +++++...-++.+++++... +|++++++ +..|+.++.+.++... +.++++||+||++.+
T Consensus 21 y~~~~vl---~~vsl~i~~Ge~~~llGpnG---sGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l 94 (372)
T 1v43_A 21 FGNFTAV---NKLNLTIKDGEFLVLLGPSG---CGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAV 94 (372)
T ss_dssp ETTEEEE---EEEEEEECTTCEEEEECCTT---SSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC----
T ss_pred ECCEEEE---eeeEEEECCCCEEEEECCCC---ChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCccc
Confidence 3344454 88898888999999997522 56665543 3344444445444322 235779999999999
Q ss_pred CCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCH
Q psy7365 384 NDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDP 463 (601)
Q Consensus 384 ~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~ 463 (601)
|+++||+||+.|....++.+..+.+++++++++.++|.++.++++.+|||||||||+|||||+.+|++|||||||+|||+
T Consensus 95 ~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~ 174 (372)
T 1v43_A 95 WPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDA 174 (372)
T ss_dssp --CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCH
T ss_pred CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCH
Confidence 99999999999976666666666677899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365 464 GARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 519 (601)
Q Consensus 464 ~~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~ 519 (601)
..+.++++.|+++.++ |+|+|++|||++++..+||||++|++|+++..|+++++..
T Consensus 175 ~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~ 231 (372)
T 1v43_A 175 KLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 231 (372)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999765 9999999999999999999999999999999999999864
No 69
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.5e-34 Score=293.97 Aligned_cols=199 Identities=21% Similarity=0.251 Sum_probs=164.1
Q ss_pred cCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCc----ccccccccCCCC
Q psy7365 312 LSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSA----PQKSYIGYCPQF 380 (601)
Q Consensus 312 ~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~----~~~~~ig~v~Q~ 380 (601)
+.+++++ +++++...-++.+++++... +|++++++ +..|..++.+.+.... ..++.+||+||+
T Consensus 17 y~~~~vl---~~vsl~i~~Ge~~~liG~nG---sGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~ 90 (257)
T 1g6h_A 17 FGEFKAL---DGVSISVNKGDVTLIIGPNG---SGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQT 90 (257)
T ss_dssp ETTEEEE---EEECCEEETTCEEEEECSTT---SSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCC
T ss_pred ECCEeeE---eeeEEEEeCCCEEEEECCCC---CCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccC
Confidence 3344554 88999999999999997522 56555443 3344444445444321 124579999999
Q ss_pred cccCCCCCHHHHHHHhHHh--cC-----------CChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhC
Q psy7365 381 DALNDRLTPREHLEFYSRV--RN-----------LPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLG 447 (601)
Q Consensus 381 ~~l~~~lTv~E~L~~~~~~--~g-----------~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~ 447 (601)
+.+++.+||+||+.+.... ++ .+..+.+++++++++.++|.+..++++.+|||||||||+||+||++
T Consensus 91 ~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~ 170 (257)
T 1g6h_A 91 PQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMT 170 (257)
T ss_dssp CGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHT
T ss_pred CccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHc
Confidence 9999999999999886433 23 2334455678999999999999999999999999999999999999
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHH
Q psy7365 448 NTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATH 516 (601)
Q Consensus 448 ~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~ 516 (601)
+|++|||||||+|||+.+++.++++|++++++|+|||++|||++++..+|||+++|++|++++.|++++
T Consensus 171 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 171 NPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 999999999999999999999999999998779999999999999999999999999999999999988
No 70
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=2e-34 Score=289.34 Aligned_cols=193 Identities=19% Similarity=0.280 Sum_probs=158.2
Q ss_pred cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCcc-------cccccccCCCCcccCCCC
Q psy7365 322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSAP-------QKSYIGYCPQFDALNDRL 387 (601)
Q Consensus 322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~~-------~~~~ig~v~Q~~~l~~~l 387 (601)
+++++...-++.+++++... +|++++++ +..|+.++.+.+..... .++.+||+||++.+++.+
T Consensus 22 ~~isl~i~~Ge~~~iiG~nG---sGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~ 98 (235)
T 3tif_A 22 KNVNLNIKEGEFVSIMGPSG---SGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLL 98 (235)
T ss_dssp EEEEEEECTTCEEEEECSTT---SSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTS
T ss_pred EeeeEEEcCCCEEEEECCCC---CcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCC
Confidence 89999999999999998522 56555443 34455555554443221 134699999999999999
Q ss_pred CHHHHHHHhHHhc---CCChhHHHHHHHHHHHHcCCCcc-cccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCH
Q psy7365 388 TPREHLEFYSRVR---NLPSVLLNTIVNESLNKFALGHY-SDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDP 463 (601)
Q Consensus 388 Tv~E~L~~~~~~~---g~~~~~~~~~~~~lLe~~~L~~~-~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~ 463 (601)
||+||+.+..... +.+..+..+++.++++.++|.+. .++++.+|||||||||+||+||+++|++|||||||+|||+
T Consensus 99 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~ 178 (235)
T 3tif_A 99 TALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDS 178 (235)
T ss_dssp CHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCH
T ss_pred cHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 9999999866543 34455566788999999999875 4999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHH
Q psy7365 464 GARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 518 (601)
Q Consensus 464 ~~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~ 518 (601)
.++..++++|++++++ |+|||++|||++.+ .+||||++|++|+++..++++++.
T Consensus 179 ~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~~~~~~~~~~ 233 (235)
T 3tif_A 179 KTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVEREEKLRGFD 233 (235)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEECC---
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEcChhhhc
Confidence 9999999999999765 99999999999965 799999999999999999887754
No 71
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=2.9e-34 Score=303.74 Aligned_cols=192 Identities=21% Similarity=0.363 Sum_probs=164.4
Q ss_pred cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC-cccccccccCCCCcccCCCCCHHHHH
Q psy7365 322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS-APQKSYIGYCPQFDALNDRLTPREHL 393 (601)
Q Consensus 322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~-~~~~~~ig~v~Q~~~l~~~lTv~E~L 393 (601)
+++++...-++.+++++... +|++++++ +..|+.++.+.++.. .+.++.+||+||++.+|+++||+||+
T Consensus 17 ~~vsl~i~~Ge~~~llGpnG---sGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl 93 (348)
T 3d31_A 17 DNLSLKVESGEYFVILGPTG---AGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNL 93 (348)
T ss_dssp EEEEEEECTTCEEEEECCCT---HHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHH
T ss_pred eeeEEEEcCCCEEEEECCCC---ccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHH
Confidence 88899888999999998532 56665543 334444444444432 22357899999999999999999999
Q ss_pred HHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHH
Q psy7365 394 EFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCI 473 (601)
Q Consensus 394 ~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL 473 (601)
.|....++.+.. ++++++++.++|.++.++++.+|||||||||+|||||+.+|++|||||||+|||+..++.+++.|
T Consensus 94 ~~~~~~~~~~~~---~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l 170 (348)
T 3d31_A 94 EFGMRMKKIKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREML 170 (348)
T ss_dssp HHHHHHHCCCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHH---HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHH
Confidence 998766655433 67899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh-CCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365 474 ERAVS-EGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 519 (601)
Q Consensus 474 ~~l~~-~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~ 519 (601)
+++.+ .|+|+|++|||++++..+||||++|++|+++..|+++++.+
T Consensus 171 ~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~ 217 (348)
T 3d31_A 171 SVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFE 217 (348)
T ss_dssp HHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHS
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99865 49999999999999999999999999999999999999864
No 72
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=3e-34 Score=289.10 Aligned_cols=193 Identities=25% Similarity=0.332 Sum_probs=160.3
Q ss_pred cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC-cccccccccCCCCcccCCCCCHHHHH
Q psy7365 322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS-APQKSYIGYCPQFDALNDRLTPREHL 393 (601)
Q Consensus 322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~-~~~~~~ig~v~Q~~~l~~~lTv~E~L 393 (601)
+++++...- +.+++++... +|++++++ +..|..++.+.+... ...++++||+||++.+++.+||+||+
T Consensus 16 ~~isl~i~~-e~~~liG~nG---sGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl 91 (240)
T 2onk_A 16 LNVDFEMGR-DYCVLLGPTG---AGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNI 91 (240)
T ss_dssp EEEEEEECS-SEEEEECCTT---SSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHH
T ss_pred eeeEEEECC-EEEEEECCCC---CCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHH
Confidence 788888888 9999997522 55555433 334444444544322 22356799999999999999999999
Q ss_pred HHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHH
Q psy7365 394 EFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCI 473 (601)
Q Consensus 394 ~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL 473 (601)
.|....++. ...+++++++++.++|.+..++++.+||||||||++||+||+++|++|||||||+|||+.+++.++++|
T Consensus 92 ~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l 169 (240)
T 2onk_A 92 AYGLRNVER--VERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEEL 169 (240)
T ss_dssp HTTCTTSCH--HHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHH
T ss_pred HHHHHHcCC--chHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 886543332 222567889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365 474 ERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK 520 (601)
Q Consensus 474 ~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~ 520 (601)
++++++ |+|||++|||++++..+|||+++|++|++++.|+++++.+.
T Consensus 170 ~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 217 (240)
T 2onk_A 170 RFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp HHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999754 99999999999999999999999999999999999998653
No 73
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=4.6e-34 Score=287.59 Aligned_cols=201 Identities=20% Similarity=0.251 Sum_probs=163.6
Q ss_pred cCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCcc----cccccccCCCC
Q psy7365 312 LSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSAP----QKSYIGYCPQF 380 (601)
Q Consensus 312 ~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~~----~~~~ig~v~Q~ 380 (601)
+.++.++ +++++...-++.+++++... +|++++++ +..|+.++.+.+..... .++.+||+||+
T Consensus 16 y~~~~vl---~~vsl~i~~Ge~~~l~G~nG---sGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~ 89 (240)
T 1ji0_A 16 YGAIHAI---KGIDLKVPRGQIVTLIGANG---AGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEG 89 (240)
T ss_dssp ETTEEEE---EEEEEEEETTCEEEEECSTT---SSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSS
T ss_pred ECCeeEE---eeeEEEEcCCCEEEEECCCC---CCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecC
Confidence 3344444 88999889999999997532 55555443 33444444454443211 13459999999
Q ss_pred cccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcC-CCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCC
Q psy7365 381 DALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFA-LGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTS 459 (601)
Q Consensus 381 ~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~-L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTs 459 (601)
+.+++.+||+||+.++.. ...+..+..+.++++++.++ +.+..++++.+|||||||||+||+||+++|++|||||||+
T Consensus 90 ~~l~~~ltv~enl~~~~~-~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts 168 (240)
T 1ji0_A 90 RRIFPELTVYENLMMGAY-NRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSL 168 (240)
T ss_dssp CCCCTTSBHHHHHHGGGT-TCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTT
T ss_pred CccCCCCcHHHHHHHhhh-cCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcc
Confidence 999999999999988642 22233445567889999995 9888999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365 460 GMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 519 (601)
Q Consensus 460 GLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~ 519 (601)
|||+.+++.++++|++++++|+|||++|||++++..+|||+++|++|++++.|+++++.+
T Consensus 169 ~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 169 GLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence 999999999999999998789999999999999999999999999999999999988753
No 74
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=6.7e-34 Score=290.76 Aligned_cols=199 Identities=17% Similarity=0.244 Sum_probs=165.6
Q ss_pred cCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCc---ccccccccCCCCc
Q psy7365 312 LSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSA---PQKSYIGYCPQFD 381 (601)
Q Consensus 312 ~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~---~~~~~ig~v~Q~~ 381 (601)
+.+++++ +++++...-++.+++++... +|++++++ +..|..++.|.+.... ..++.+||+||++
T Consensus 21 ~~~~~vL---~~vsl~i~~Ge~~~liG~nG---sGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~ 94 (266)
T 4g1u_C 21 VQQQALI---NDVSLHIASGEMVAIIGPNG---AGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYS 94 (266)
T ss_dssp ETTEEEE---EEEEEEEETTCEEEEECCTT---SCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCC
T ss_pred eCCeeEE---EeeEEEEcCCCEEEEECCCC---CcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCC
Confidence 3455655 89999999999999998522 55555433 3445555555554322 2346699999999
Q ss_pred ccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhC------CCCEEEEE
Q psy7365 382 ALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLG------NTPLIFLD 455 (601)
Q Consensus 382 ~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~------~P~lLlLD 455 (601)
.+++.+||+||+.+....+ .....+++++++++.+++.+..++++.+|||||||||+||+||++ +|++||||
T Consensus 95 ~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllD 172 (266)
T 4g1u_C 95 ELAFPFSVSEVIQMGRAPY--GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLD 172 (266)
T ss_dssp CCCSCCBHHHHHHGGGTTS--CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEEC
T ss_pred ccCCCCCHHHHHHhhhhhc--CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEe
Confidence 9888899999999875443 233456678999999999999999999999999999999999999 99999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHH
Q psy7365 456 EPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 518 (601)
Q Consensus 456 EPTsGLD~~~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~ 518 (601)
|||+|||+.++..++++|++++++ |+|||++|||++++..+||||++|++|++++.|+++++.
T Consensus 173 EPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 173 EPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred CccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 999999999999999999999765 579999999999999999999999999999999999874
No 75
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.7e-33 Score=287.63 Aligned_cols=196 Identities=21% Similarity=0.280 Sum_probs=162.2
Q ss_pred cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCcccccccccCCCCc-ccCCCCCHHHHH
Q psy7365 322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSAPQKSYIGYCPQFD-ALNDRLTPREHL 393 (601)
Q Consensus 322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~~~~~~ig~v~Q~~-~l~~~lTv~E~L 393 (601)
+++++...-++.+++++... +|++++++ +..|..++.+.+......++.+||+||++ .+++.+||+||+
T Consensus 24 ~~vsl~i~~Ge~~~liG~nG---sGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl 100 (266)
T 2yz2_A 24 ENVSLVINEGECLLVAGNTG---SGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEV 100 (266)
T ss_dssp EEEEEEECTTCEEEEECSTT---SSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHH
T ss_pred eeeEEEEcCCCEEEEECCCC---CcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHH
Confidence 88999999999999997532 56555443 33344444444332223456799999996 567779999999
Q ss_pred HHhHHhcCCChhHHHHHHHHHHHHcCCC--cccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHH
Q psy7365 394 EFYSRVRNLPSVLLNTIVNESLNKFALG--HYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWT 471 (601)
Q Consensus 394 ~~~~~~~g~~~~~~~~~~~~lLe~~~L~--~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~ 471 (601)
.++...+ .+..+.+++++++++.++|. +..++++.+|||||||||+||+||+++|++|||||||+|||+.+++.+++
T Consensus 101 ~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~ 179 (266)
T 2yz2_A 101 AFAVKNF-YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLR 179 (266)
T ss_dssp HHTTTTT-CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred HHHHHhc-CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHH
Confidence 9865432 33333356788999999999 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHHh
Q psy7365 472 CIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKY 521 (601)
Q Consensus 472 lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~~ 521 (601)
+|++++++|+|||++|||++++..+|||+++|++|+++..|+++++.+..
T Consensus 180 ~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 229 (266)
T 2yz2_A 180 IVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKY 229 (266)
T ss_dssp HHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHHS
T ss_pred HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCc
Confidence 99999777999999999999999999999999999999999999987654
No 76
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=6.9e-34 Score=294.05 Aligned_cols=185 Identities=23% Similarity=0.312 Sum_probs=134.6
Q ss_pred hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc
Q psy7365 49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD 122 (601)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~ 122 (601)
...+++|++.+ ..+++|+||++.+ +||||| ||||| .++|+|+++|++|+|.++|
T Consensus 40 ~l~~~~l~~~~------~~vl~~isl~i~~Ge~~~i~G~NGs--GKSTL------lk~l~Gl~~p~~G~I~~~g------ 99 (290)
T 2bbs_A 40 SLSFSNFSLLG------TPVLKDINFKIERGQLLAVAGSTGA--GKTSL------LMMIMGELEPSEGKIKHSG------ 99 (290)
T ss_dssp ----------C------CCSEEEEEEEECTTCEEEEEESTTS--SHHHH------HHHHTTSSCEEEEEEECCS------
T ss_pred eEEEEEEEEcC------ceEEEeeEEEEcCCCEEEEECCCCC--cHHHH------HHHHhcCCCCCCcEEEECC------
Confidence 35689999852 3589999999988 999999 56655 5799999999999999988
Q ss_pred hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcc-----------cCCccccCChHH
Q psy7365 123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHK-----------RTSLANTLSGGM 191 (601)
Q Consensus 123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgG~ 191 (601)
.+||+||++.+|+. ||+||+. +.. .+. .+..++++.+++.+. .++.+.+|||||
T Consensus 100 ------~i~~v~Q~~~l~~~-tv~enl~-~~~---~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq 164 (290)
T 2bbs_A 100 ------RISFCSQNSWIMPG-TIKENII-GVS---YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQ 164 (290)
T ss_dssp ------CEEEECSSCCCCSS-BHHHHHH-TTC---CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHH
T ss_pred ------EEEEEeCCCccCcc-cHHHHhh-Ccc---cch----HHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHH
Confidence 38999999988875 9999997 321 121 123344555554332 234568999999
Q ss_pred HhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHH
Q psy7365 192 QRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLF 271 (601)
Q Consensus 192 ~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 271 (601)
|||+++|||| +++
T Consensus 165 ~QRv~lAraL--------------------------------------~~~----------------------------- 177 (290)
T 2bbs_A 165 RARISLARAV--------------------------------------YKD----------------------------- 177 (290)
T ss_dssp HHHHHHHHHH--------------------------------------HSC-----------------------------
T ss_pred HHHHHHHHHH--------------------------------------HCC-----------------------------
Confidence 9999865433 333
Q ss_pred hhccCCCcEEEEecCCCCCCHHHHHHHHHHH-HHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365 272 AMSFVPASTVILDEPTSGVDPYSRRSIWELL-IKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS 348 (601)
Q Consensus 272 ~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l-~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~ 348 (601)
|+++||||||+|||+.++..+++.+ .++ ..|+|||++||+++++. .||++++|.+|+++..+++
T Consensus 178 ------p~lllLDEPts~LD~~~~~~i~~~ll~~~------~~~~tviivtHd~~~~~-~~d~i~~l~~G~i~~~g~~ 242 (290)
T 2bbs_A 178 ------ADLYLLDSPFGYLDVLTEKEIFESCVCKL------MANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTF 242 (290)
T ss_dssp ------CSEEEEESTTTTCCHHHHHHHHHHCCCCC------TTTSEEEEECCCHHHHH-HSSEEEEEETTEEEEEECH
T ss_pred ------CCEEEEECCcccCCHHHHHHHHHHHHHHh------hCCCEEEEEecCHHHHH-cCCEEEEEECCeEEEeCCH
Confidence 5899999999999999999999864 333 24899999999999886 5999999999999876654
No 77
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.4e-32 Score=278.97 Aligned_cols=190 Identities=22% Similarity=0.320 Sum_probs=158.1
Q ss_pred CcEEEEEecchhHHHhcCCEEEEecCCccccccCccccccccc-----cccccccccCCcccccccccCCCCcccCCCCC
Q psy7365 314 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFA-----RGYYLSLDMKSAPQKSYIGYCPQFDALNDRLT 388 (601)
Q Consensus 314 G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk~~~g-----~g~~igld~~~~~~~~~ig~v~Q~~~l~~~lT 388 (601)
++.++ +++++...-++.+++++... .|++++++.-.+ .|.+. .++.+||+||++.+++.+|
T Consensus 17 ~~~vl---~~isl~i~~Ge~~~l~G~nG---sGKSTLl~~l~Gl~~p~~G~I~--------~~~~i~~v~q~~~~~~~~t 82 (253)
T 2nq2_C 17 ENFLF---QQLNFDLNKGDILAVLGQNG---CGKSTLLDLLLGIHRPIQGKIE--------VYQSIGFVPQFFSSPFAYS 82 (253)
T ss_dssp TTEEE---EEEEEEEETTCEEEEECCSS---SSHHHHHHHHTTSSCCSEEEEE--------ECSCEEEECSCCCCSSCCB
T ss_pred CCeEE---EEEEEEECCCCEEEEECCCC---CCHHHHHHHHhCCCCCCCcEEE--------EeccEEEEcCCCccCCCCC
Confidence 45555 88999889999999998532 566665542111 11111 3467999999999998999
Q ss_pred HHHHHHHhHHhc-C---CChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHH
Q psy7365 389 PREHLEFYSRVR-N---LPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPG 464 (601)
Q Consensus 389 v~E~L~~~~~~~-g---~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~ 464 (601)
|+||+.+....+ + .+.....++++++++.++|.+..++++.+|||||||||+||+||+.+|++|||||||+|||+.
T Consensus 83 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~ 162 (253)
T 2nq2_C 83 VLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLA 162 (253)
T ss_dssp HHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHH
T ss_pred HHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 999998864322 2 123344567899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHH
Q psy7365 465 ARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 518 (601)
Q Consensus 465 ~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~ 518 (601)
+++.++++|++++++ |+|||++|||++++..+|||+++|++|+ ++.|+++++.
T Consensus 163 ~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 163 NQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp HHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 999999999999877 9999999999999999999999999999 9999998763
No 78
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.98 E-value=4.3e-33 Score=286.64 Aligned_cols=202 Identities=18% Similarity=0.209 Sum_probs=160.4
Q ss_pred ccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccC--C---cccccccccCC
Q psy7365 311 SLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMK--S---APQKSYIGYCP 378 (601)
Q Consensus 311 ~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~--~---~~~~~~ig~v~ 378 (601)
.+.++.++ +++++...-++.+++++... +|++++++ +..|..++.+.+.. . ...++.+||+|
T Consensus 30 ~y~~~~vL---~~isl~i~~Ge~~~liG~NG---sGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~ 103 (279)
T 2ihy_A 30 MKQGKTIL---KKISWQIAKGDKWILYGLNG---AGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVS 103 (279)
T ss_dssp EETTEEEE---EEEEEEEETTCEEEEECCTT---SSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEEC
T ss_pred EECCEEEE---EeeeEEEcCCCEEEEECCCC---CcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEE
Confidence 34444554 88999999999999997522 55555443 33445545554442 1 12356799999
Q ss_pred CCcccC--CCCCHHHHHHHhHH----hcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEE
Q psy7365 379 QFDALN--DRLTPREHLEFYSR----VRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLI 452 (601)
Q Consensus 379 Q~~~l~--~~lTv~E~L~~~~~----~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lL 452 (601)
|++.++ +.+||+||+.+... +++....+..++++++++.++|.+..++++.+|||||||||+||+||+.+|++|
T Consensus 104 Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lL 183 (279)
T 2ihy_A 104 HSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVL 183 (279)
T ss_dssp HHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEE
T ss_pred cCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEE
Confidence 997643 35699999987431 122223344567889999999999999999999999999999999999999999
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhCCcEE--EEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHH
Q psy7365 453 FLDEPTSGMDPGARRFLWTCIERAVSEGRCV--ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 518 (601)
Q Consensus 453 lLDEPTsGLD~~~~~~i~~lL~~l~~~G~tV--llsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~ 518 (601)
||||||+|||+.+++.++++|++++++|+|| |++|||++++..+|||+++|++|++++.|+++++.
T Consensus 184 lLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 251 (279)
T 2ihy_A 184 ILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDIL 251 (279)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHHC
T ss_pred EEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999997669999 99999999999999999999999999999998874
No 79
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.98 E-value=1.2e-35 Score=330.86 Aligned_cols=314 Identities=16% Similarity=0.159 Sum_probs=205.9
Q ss_pred ccceeecceE-Eeec------ccCCCCCCCccccchhhhHHHh--ccCCCCCCeeEEEEccccCCCchHHhcccEEEEcc
Q psy7365 65 DSYGISDTSL-EEQP------LGPSGITLGLHTLGLEFVSRSM--LMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQ 135 (601)
Q Consensus 65 ~~~~~~~~~~-~~~~------~g~~g~~~g~~~~g~~~~~~~~--l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~Q 135 (601)
+..+|+|+|| .+.+ +||||| ||||| + ++ ++|+++|++|.|+++|.+........++.+|++||
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGs--GKSTL-----~-~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q 95 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGT--GKTLF-----S-IQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLA 95 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTS--SHHHH-----H-HHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHH
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCC--CHHHH-----H-HHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChH
Confidence 4679999999 8877 999999 56655 4 45 68999999999999998843233345567999999
Q ss_pred CCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchhhHHHHHHHhh
Q psy7365 136 YNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMN 215 (601)
Q Consensus 136 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~ 215 (601)
++....+ +.+ ...... .+..++++.+++.+..++.+.+|||||
T Consensus 96 ~~~~~~~------l~~----~~~~~~---~~~~~~l~~~~l~~~~~~~~~~LS~g~------------------------ 138 (525)
T 1tf7_A 96 KLVDEGK------LFI----LDASPD---PEGQEVVGGFDLSALIERINYAIQKYR------------------------ 138 (525)
T ss_dssp HHHHTTS------EEE----EECCCC---SSCCSCCSSHHHHHHHHHHHHHHHHHT------------------------
T ss_pred HhhccCc------EEE----EecCcc---cchhhhhcccCHHHHHHHHHHHHHHcC------------------------
Confidence 8642211 100 001000 001112233333333344444444443
Q ss_pred hhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCC-----CC
Q psy7365 216 AANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTS-----GV 290 (601)
Q Consensus 216 ~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPts-----gL 290 (601)
|++++|||||+ +|
T Consensus 139 --------------------------------------------------------------~~~lilDe~t~~~~~~~l 156 (525)
T 1tf7_A 139 --------------------------------------------------------------ARRVSIDSVTSVFQQYDA 156 (525)
T ss_dssp --------------------------------------------------------------CSEEEEECSTTTSTTTCC
T ss_pred --------------------------------------------------------------CCEEEECCHHHHHHhcCC
Confidence 45788999997 56
Q ss_pred CHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHH---------HhcCCEEEEecC----Cccccc-------cCcc-
Q psy7365 291 DPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEA---------DLLGDRIAIIAA----GKLQCC-------GSSV- 349 (601)
Q Consensus 291 D~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~---------~~l~Drv~vL~~----GkIv~~-------G~~~- 349 (601)
|+..++.+++++++++ ..|+|||++||+++++ ..+||+|++|.+ |+.... +...
T Consensus 157 D~~~~~~l~~ll~~l~-----~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~~~G~~~r~l~~~k~r~~~~~ 231 (525)
T 1tf7_A 157 SSVVRRELFRLVARLK-----QIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVLEGERRRRTLEILKLRGTSHM 231 (525)
T ss_dssp HHHHHHHHHHHHHHHH-----HHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEECSTTCCEEEEEEEEETTSCCC
T ss_pred HHHHHHHHHHHHHHHH-----HCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEccCCceeEEEEEEECCCCCCC
Confidence 9999999999999984 3589999999999984 566999999987 443211 0000
Q ss_pred -----c-cccc--------------------ccccc-----ccccccCC-------------------------ccc-cc
Q psy7365 350 -----F-LKNS--------------------FARGY-----YLSLDMKS-------------------------APQ-KS 372 (601)
Q Consensus 350 -----l-Lk~~--------------------~g~g~-----~igld~~~-------------------------~~~-~~ 372 (601)
+ +... ...++ .++..+.. .+. .+
T Consensus 232 ~~~~~~~i~~~gi~v~p~~~~~~~~~~~~~~l~~g~~~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~ 311 (525)
T 1tf7_A 232 KGEYPFTITDHGINIFPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKER 311 (525)
T ss_dssp CSEEEEEEETTEEEECCTTTCCSCCCCCCCEECCSCHHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCC
T ss_pred CceEEEEEcCCCEEEEeccccccccccccceeecChHHHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCC
Confidence 0 0000 00000 00000000 000 01
Q ss_pred ccccCCCCcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEE
Q psy7365 373 YIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLI 452 (601)
Q Consensus 373 ~ig~v~Q~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lL 452 (601)
.+.|++|++ ..+ +.-.....++. .++ +...|+....+.++.+|||||+||+.+|+++..+|+++
T Consensus 312 vi~~~~ee~-------~~~-l~~~~~~~g~~-------~~~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~ll 375 (525)
T 1tf7_A 312 AILFAYEES-------RAQ-LLRNAYSWGMD-------FEE-MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARI 375 (525)
T ss_dssp EEEEESSSC-------HHH-HHHHHHTTSCC-------HHH-HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEEEEEeCC-------HHH-HHHHHHHcCCC-------HHH-HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEE
Confidence 123334432 111 11111112322 112 23456667778899999999999999999999999999
Q ss_pred EEECCCCCCCHH-----HHHHHHHHHHHHHhCCcEEEEEccCh----------hHHHhhCCEEEEEeCCE
Q psy7365 453 FLDEPTSGMDPG-----ARRFLWTCIERAVSEGRCVILTSHNM----------EECEALCTKLTIMVNGQ 507 (601)
Q Consensus 453 lLDEPTsGLD~~-----~~~~i~~lL~~l~~~G~tVllsTHdl----------~e~~~l~drv~iL~~G~ 507 (601)
|+| ||+|||+. .++.++++++.+++.|.|||++||+. ++++.+||+|++|++|+
T Consensus 376 ilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 376 AID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp EEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred EEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 999 99999999 99999999999988899999999999 88899999999999887
No 80
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.98 E-value=1.2e-32 Score=335.29 Aligned_cols=208 Identities=23% Similarity=0.338 Sum_probs=168.2
Q ss_pred hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365 50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D 122 (601)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~ 122 (601)
+.++||++.|.. ..+.++|+|+||++++ +||||| ||||| .++|.|++.|++|+|++||.|+.+ +
T Consensus 1077 I~f~nVsf~Y~~-~~~~~VL~~isl~I~~Ge~vaIVG~SGs--GKSTL------~~lL~rl~~p~~G~I~iDG~di~~i~ 1147 (1321)
T 4f4c_A 1077 VIFKNVRFAYPE-RPEIEILKGLSFSVEPGQTLALVGPSGC--GKSTV------VALLERFYDTLGGEIFIDGSEIKTLN 1147 (1321)
T ss_dssp EEEEEEEECCTT-SCSSCSEEEEEEEECTTCEEEEECSTTS--STTSH------HHHHTTSSCCSSSEEEETTEETTTBC
T ss_pred EEEEEEEEeCCC-CCCCccccceeEEECCCCEEEEECCCCC--hHHHH------HHHHhcCccCCCCEEEECCEEhhhCC
Confidence 559999999742 2345799999999998 999999 67776 579999999999999999999976 5
Q ss_pred hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCc-----------ccCCccccCChHH
Q psy7365 123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPH-----------KRTSLANTLSGGM 191 (601)
Q Consensus 123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgG~ 191 (601)
...+|+++|+|||+|.+|. -|++||+.|+......+. +++.++++..++.+ .......+|||||
T Consensus 1148 ~~~lR~~i~~V~Qdp~LF~-gTIreNI~~gld~~~~sd----~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQ 1222 (1321)
T 4f4c_A 1148 PEHTRSQIAIVSQEPTLFD-CSIAENIIYGLDPSSVTM----AQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQ 1222 (1321)
T ss_dssp HHHHHTTEEEECSSCCCCS-EEHHHHHSSSSCTTTSCH----HHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHH
T ss_pred HHHHHhheEEECCCCEeeC-ccHHHHHhccCCCCCCCH----HHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHH
Confidence 6788999999999999995 499999987643333333 34555666666432 2233446799999
Q ss_pred HhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHH
Q psy7365 192 QRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLF 271 (601)
Q Consensus 192 ~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 271 (601)
|||++||||++.|
T Consensus 1223 rQriaiARAllr~------------------------------------------------------------------- 1235 (1321)
T 4f4c_A 1223 KQRIAIARALVRN------------------------------------------------------------------- 1235 (1321)
T ss_dssp HHHHHHHHHHHSC-------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhC-------------------------------------------------------------------
Confidence 9999866544333
Q ss_pred hhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcccc
Q psy7365 272 AMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 351 (601)
Q Consensus 272 ~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lL 351 (601)
|++||||||||+||+.+...+.+.|+++ .+|+|+|+++|+++.+. .||||++|++|+|+..|++..+
T Consensus 1236 ------~~ILiLDEaTSaLD~~tE~~Iq~~l~~~------~~~~TvI~IAHRLsTi~-~aD~I~Vld~G~IvE~Gth~eL 1302 (1321)
T 4f4c_A 1236 ------PKILLLDEATSALDTESEKVVQEALDRA------REGRTCIVIAHRLNTVM-NADCIAVVSNGTIIEKGTHTQL 1302 (1321)
T ss_dssp ------CSEEEEESCCCSTTSHHHHHHHHHHTTT------SSSSEEEEECSSSSTTT-TCSEEEEESSSSEEEEECHHHH
T ss_pred ------CCEEEEeCccccCCHHHHHHHHHHHHHH------cCCCEEEEeccCHHHHH-hCCEEEEEECCEEEEECCHHHH
Confidence 4899999999999999999999999875 36899999999998876 6999999999999999987544
No 81
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.97 E-value=6.9e-32 Score=273.29 Aligned_cols=200 Identities=16% Similarity=0.173 Sum_probs=155.0
Q ss_pred cCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc---------cccccccccccccCCcc----cccccccCC
Q psy7365 312 LSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK---------NSFARGYYLSLDMKSAP----QKSYIGYCP 378 (601)
Q Consensus 312 ~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk---------~~~g~g~~igld~~~~~----~~~~ig~v~ 378 (601)
+.++.++ +++++...-++.+++++... +|++++++ +..|..++.+.+..... .+..++|+|
T Consensus 13 y~~~~vl---~~vsl~i~~Ge~~~l~G~nG---sGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~ 86 (250)
T 2d2e_A 13 IDGETIL---KGVNLVVPKGEVHALMGPNG---AGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAF 86 (250)
T ss_dssp ETTEEEE---EEEEEEEETTCEEEEECSTT---SSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCC
T ss_pred ECCEEEE---eceEEEEcCCCEEEEECCCC---CCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEec
Confidence 3344554 88999999999999997522 45554432 23344444444432211 134589999
Q ss_pred CCcccCCCCCHHHHHHHhHH-hcC--CChhHHHHHHHHHHHHcCC-CcccccccCc-CChHHHHHHHHHHHHhCCCCEEE
Q psy7365 379 QFDALNDRLTPREHLEFYSR-VRN--LPSVLLNTIVNESLNKFAL-GHYSDREVRT-LSGGNKRKLSTAIALLGNTPLIF 453 (601)
Q Consensus 379 Q~~~l~~~lTv~E~L~~~~~-~~g--~~~~~~~~~~~~lLe~~~L-~~~~~~~~~~-LSgGqkQRl~lA~AL~~~P~lLl 453 (601)
|++.+++.+||+||+.+... ..+ .+..+..+++.++++.++| .+..++++.+ |||||||||+||+||+++|++||
T Consensus 87 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lll 166 (250)
T 2d2e_A 87 QYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAV 166 (250)
T ss_dssp CCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEE
T ss_pred cCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999999999988643 223 2233445678899999999 5788999999 99999999999999999999999
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhh-CCEEEEEeCCEEEEecCHHHH
Q psy7365 454 LDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEAL-CTKLTIMVNGQFTCLGSATHL 517 (601)
Q Consensus 454 LDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l-~drv~iL~~G~iv~~G~~~~L 517 (601)
|||||+|||+.+++.++++|++++++|+|||++|||++++..+ |||+++|++|++++.|+++..
T Consensus 167 LDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (250)
T 2d2e_A 167 LDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPELA 231 (250)
T ss_dssp EECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHHH
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHHH
Confidence 9999999999999999999999976799999999999999998 599999999999999998843
No 82
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.97 E-value=2.3e-32 Score=276.74 Aligned_cols=188 Identities=16% Similarity=0.245 Sum_probs=157.0
Q ss_pred cchhHHHhcCCEEEEecCCccccccCcccc-------ccccccccccccccCC---cccccccccCCCCcccCCCCCHHH
Q psy7365 322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFL-------KNSFARGYYLSLDMKS---APQKSYIGYCPQFDALNDRLTPRE 391 (601)
Q Consensus 322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lL-------k~~~g~g~~igld~~~---~~~~~~ig~v~Q~~~l~~~lTv~E 391 (601)
+++++...-++.+++++... .|+++++ ++. |..++.+.+... ...++++||+||++.+++.+||+|
T Consensus 17 ~~vsl~i~~Ge~~~liG~NG---sGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 92 (249)
T 2qi9_C 17 GPLSGEVRAGEILHLVGPNG---AGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWH 92 (249)
T ss_dssp EEEEEEEETTCEEEEECCTT---SSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHH
T ss_pred eeeEEEEcCCCEEEEECCCC---CcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHH
Confidence 67788888889999997522 5555543 344 555554544322 123567999999999999999999
Q ss_pred HHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCC-------EEEEECCCCCCCHH
Q psy7365 392 HLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTP-------LIFLDEPTSGMDPG 464 (601)
Q Consensus 392 ~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~-------lLlLDEPTsGLD~~ 464 (601)
|+.+.. ..+.. +++++++++.++|.+..++++.+||||||||++||+||+.+|+ +|||||||+|||+.
T Consensus 93 ~l~~~~-~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~ 167 (249)
T 2qi9_C 93 YLTLHQ-HDKTR----TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVA 167 (249)
T ss_dssp HHHTTC-SSTTC----HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHH
T ss_pred HHHHhh-ccCCc----HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHH
Confidence 998752 11211 4568899999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHH
Q psy7365 465 ARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 518 (601)
Q Consensus 465 ~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~ 518 (601)
+++.++++|+++.++|+|||++|||+++++.+|||+++|++|++++.|+++++.
T Consensus 168 ~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 221 (249)
T 2qi9_C 168 QQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221 (249)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHS
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999777999999999999999999999999999999999998874
No 83
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.97 E-value=8.8e-32 Score=303.93 Aligned_cols=198 Identities=19% Similarity=0.255 Sum_probs=160.1
Q ss_pred cchhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccC
Q psy7365 46 GAYVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDI 119 (601)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~ 119 (601)
+..+..++++++.|++. .++++||++.+ +||||| ||||| .++|+|+++|++|+|.+
T Consensus 354 ~~~~l~~~~l~~~~~~~-----~l~~~~~~v~~Gei~~i~G~NGs--GKSTL------lk~l~Gl~~p~~G~I~~----- 415 (607)
T 3bk7_A 354 RETLVEYPRLVKDYGSF-----KLEVEPGEIRKGEVIGIVGPNGI--GKTTF------VKMLAGVEEPTEGKVEW----- 415 (607)
T ss_dssp CCEEEEECCEEEECSSC-----EEEECCEEEETTCEEEEECCTTS--SHHHH------HHHHHTSSCCSBSCCCC-----
T ss_pred CceEEEEeceEEEecce-----EEEecccccCCCCEEEEECCCCC--CHHHH------HHHHhcCCCCCceEEEE-----
Confidence 34456689999998642 58888998877 999999 56655 57999999999999976
Q ss_pred CCchHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchh
Q psy7365 120 RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVK 199 (601)
Q Consensus 120 ~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~ 199 (601)
+..+||+||++.+++.+||.|++.+.... .. ...+++.++++.+|+.+..++++.+|||||||||+|||
T Consensus 416 -------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~-~~---~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAr 484 (607)
T 3bk7_A 416 -------DLTVAYKPQYIKAEYEGTVYELLSKIDSS-KL---NSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAA 484 (607)
T ss_dssp -------CCCEEEECSSCCCCCSSBHHHHHHHHHHH-HH---HCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHH
T ss_pred -------eeEEEEEecCccCCCCCcHHHHHHhhhcc-CC---CHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHH
Confidence 24699999999888889999988764110 00 11356788999999999999999999999999998544
Q ss_pred hhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCc
Q psy7365 200 VWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAS 279 (601)
Q Consensus 200 ~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 279 (601)
|| +.+ |+
T Consensus 485 aL--------------------------------------~~~-----------------------------------p~ 491 (607)
T 3bk7_A 485 TL--------------------------------------LRD-----------------------------------AD 491 (607)
T ss_dssp HH--------------------------------------TSC-----------------------------------CS
T ss_pred HH--------------------------------------HhC-----------------------------------CC
Confidence 32 232 58
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecC--CccccccCcc
Q psy7365 280 TVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAA--GKLQCCGSSV 349 (601)
Q Consensus 280 ~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~--GkIv~~G~~~ 349 (601)
+|||||||+|||+.++..++++|+++. +..|+|||++|||++++..+|||+++|.+ |++...+++.
T Consensus 492 lLlLDEPt~~LD~~~~~~l~~~l~~l~----~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~ 559 (607)
T 3bk7_A 492 IYLLDEPSAYLDVEQRLAVSRAIRHLM----EKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPM 559 (607)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHH----HHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCE
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHH----HhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHH
Confidence 999999999999999999999999873 23589999999999999999999999975 6655566553
No 84
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.97 E-value=1.1e-31 Score=274.56 Aligned_cols=203 Identities=17% Similarity=0.195 Sum_probs=160.8
Q ss_pred ccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc---------cccccccccccccCCcc----cccccccC
Q psy7365 311 SLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK---------NSFARGYYLSLDMKSAP----QKSYIGYC 377 (601)
Q Consensus 311 ~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk---------~~~g~g~~igld~~~~~----~~~~ig~v 377 (601)
.+.+++++ +++++...-++.+++++... +|++++++ +..|+.++.+.+..... .++.+||+
T Consensus 29 ~y~~~~vl---~~vsl~i~~Ge~~~l~G~NG---sGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v 102 (267)
T 2zu0_C 29 SVEDKAIL---RGLSLDVHPGEVHAIMGPNG---SGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMA 102 (267)
T ss_dssp EETTEEEE---EEEEEEECTTCEEEEECCTT---SSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEE
T ss_pred EECCEEEE---EeeEEEEcCCCEEEEECCCC---CCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEE
Confidence 34445555 89999999999999997522 55555432 22344444444432211 13458999
Q ss_pred CCCcccCCCCCHHHHHHHhHH-h---cC---CChhHHHHHHHHHHHHcCCC-cccccccC-cCChHHHHHHHHHHHHhCC
Q psy7365 378 PQFDALNDRLTPREHLEFYSR-V---RN---LPSVLLNTIVNESLNKFALG-HYSDREVR-TLSGGNKRKLSTAIALLGN 448 (601)
Q Consensus 378 ~Q~~~l~~~lTv~E~L~~~~~-~---~g---~~~~~~~~~~~~lLe~~~L~-~~~~~~~~-~LSgGqkQRl~lA~AL~~~ 448 (601)
||++.+++.+|+.||+.+... . ++ .+..+..++++++++.++|. +..++++. +|||||||||+||+||+.+
T Consensus 103 ~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~ 182 (267)
T 2zu0_C 103 FQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLE 182 (267)
T ss_dssp CSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHC
T ss_pred ccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhC
Confidence 999999999999999987431 1 22 23334456788999999996 57889987 5999999999999999999
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhh-CCEEEEEeCCEEEEecCHHHHHH
Q psy7365 449 TPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEAL-CTKLTIMVNGQFTCLGSATHLKS 519 (601)
Q Consensus 449 P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l-~drv~iL~~G~iv~~G~~~~L~~ 519 (601)
|++|||||||+|||+.+++.++++|++++++|+|||++|||++++..+ |||+++|++|++++.|+++++..
T Consensus 183 p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 254 (267)
T 2zu0_C 183 PELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQ 254 (267)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTTHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHHHHhh
Confidence 999999999999999999999999999876799999999999999987 99999999999999999988754
No 85
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.97 E-value=3.2e-32 Score=330.85 Aligned_cols=207 Identities=23% Similarity=0.316 Sum_probs=163.7
Q ss_pred hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365 50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D 122 (601)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~ 122 (601)
+.++||++.|++. .+.++++|+||++.+ +||||| ||||| .++|+|+++|++|+|.++|.++.. +
T Consensus 1031 i~~~~v~~~y~~~-~~~~~l~~vsl~i~~Ge~v~ivG~sGs--GKSTl------~~~l~g~~~p~~G~I~i~g~~i~~~~ 1101 (1284)
T 3g5u_A 1031 VQFSGVVFNYPTR-PSIPVLQGLSLEVKKGQTLALVGSSGC--GKSTV------VQLLERFYDPMAGSVFLDGKEIKQLN 1101 (1284)
T ss_dssp EEEEEEEBCCSCG-GGCCSBSSCCEEECSSSEEEEECSSST--THHHH------HHHHTTSSCCSEEEEESSSSCTTSSC
T ss_pred EEEEEEEEECCCC-CCCeeecceeEEEcCCCEEEEECCCCC--CHHHH------HHHHhcCcCCCCCEEEECCEEcccCC
Confidence 4599999998532 134699999999988 999999 56654 579999999999999999999975 4
Q ss_pred hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcc-----------cCCccccCChHH
Q psy7365 123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHK-----------RTSLANTLSGGM 191 (601)
Q Consensus 123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgG~ 191 (601)
...+|+++|||||+|.+| ..||+||+.++......+.++ +.++++..++.+. ......+|||||
T Consensus 1102 ~~~~r~~i~~v~Q~~~l~-~~ti~eNi~~~~~~~~~~~~~----i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq 1176 (1284)
T 3g5u_A 1102 VQWLRAQLGIVSQEPILF-DCSIAENIAYGDNSRVVSYEE----IVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQ 1176 (1284)
T ss_dssp HHHHTTSCEEEESSCCCC-SSBHHHHHTCCCSSCCCCHHH----HHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHH
T ss_pred HHHHHhceEEECCCCccc-cccHHHHHhccCCCCCCCHHH----HHHHHHHhCcHHHHHhCccccccccCCCCCccCHHH
Confidence 566788999999999877 579999998765433334333 3334444443322 334457899999
Q ss_pred HhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHH
Q psy7365 192 QRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLF 271 (601)
Q Consensus 192 ~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 271 (601)
|||+++|||++ .+
T Consensus 1177 ~Qrv~iARal~--------------------------------------~~----------------------------- 1189 (1284)
T 3g5u_A 1177 KQRIAIARALV--------------------------------------RQ----------------------------- 1189 (1284)
T ss_dssp HHHHHHHHHHH--------------------------------------HC-----------------------------
T ss_pred HHHHHHHHHHH--------------------------------------cC-----------------------------
Confidence 99998665433 33
Q ss_pred hhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccc
Q psy7365 272 AMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF 350 (601)
Q Consensus 272 ~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~l 350 (601)
|++|||||||+|||+.+.+.+++.|+++ ..|+|+|++|||++++. .||||++|++|+++..|++..
T Consensus 1190 ------p~iLiLDEpTs~lD~~~~~~i~~~l~~~------~~~~tvi~isH~l~~i~-~~dri~vl~~G~i~~~g~~~~ 1255 (1284)
T 3g5u_A 1190 ------PHILLLDEATSALDTESEKVVQEALDKA------REGRTCIVIAHRLSTIQ-NADLIVVIQNGKVKEHGTHQQ 1255 (1284)
T ss_dssp ------CSSEEEESCSSSCCHHHHHHHHHHHHHH------SSSSCEEEECSCTTGGG-SCSEEEEEETBEEEEEECHHH
T ss_pred ------CCEEEEeCCcccCCHHHHHHHHHHHHHh------CCCCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCHHH
Confidence 5899999999999999999999999875 35899999999999985 599999999999998886543
No 86
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=7.3e-32 Score=300.75 Aligned_cols=191 Identities=20% Similarity=0.219 Sum_probs=155.9
Q ss_pred cchhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccC
Q psy7365 46 GAYVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDI 119 (601)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~ 119 (601)
+..+..++++++.|++ ..+++.||++.+ +||||| ||||| .++|+|+++|++|+|.++|
T Consensus 266 ~~~~l~~~~l~~~~~~-----~~l~~~~~~i~~Gei~~i~G~nGs--GKSTL------l~~l~Gl~~p~~G~i~~~~--- 329 (538)
T 3ozx_A 266 LKTKMKWTKIIKKLGD-----FQLVVDNGEAKEGEIIGILGPNGI--GKTTF------ARILVGEITADEGSVTPEK--- 329 (538)
T ss_dssp CCEEEEECCEEEEETT-----EEEEECCEEEETTCEEEEECCTTS--SHHHH------HHHHTTSSCCSBCCEESSC---
T ss_pred ccceEEEcceEEEECC-----EEEEeccceECCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCcEEEECC---
Confidence 3445668999998865 247777888877 999999 56655 5799999999999998764
Q ss_pred CCchHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchh
Q psy7365 120 RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVK 199 (601)
Q Consensus 120 ~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~ 199 (601)
..++|+||++..++..||.||+.+..... ... ..+.++++++.+|+.+..++++.+|||||||||+|||
T Consensus 330 --------~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAr 398 (538)
T 3ozx_A 330 --------QILSYKPQRIFPNYDGTVQQYLENASKDA-LST--SSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAA 398 (538)
T ss_dssp --------CCEEEECSSCCCCCSSBHHHHHHHHCSST-TCT--TSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHH
T ss_pred --------eeeEeechhcccccCCCHHHHHHHhhhhc-cch--hHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHH
Confidence 35899999987777899999998743211 111 1345788999999999999999999999999998654
Q ss_pred hhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCc
Q psy7365 200 VWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAS 279 (601)
Q Consensus 200 ~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 279 (601)
|| +.+ |+
T Consensus 399 aL--------------------------------------~~~-----------------------------------p~ 405 (538)
T 3ozx_A 399 TL--------------------------------------AKE-----------------------------------AD 405 (538)
T ss_dssp HH--------------------------------------HSC-----------------------------------CS
T ss_pred HH--------------------------------------HcC-----------------------------------CC
Confidence 32 233 58
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCC
Q psy7365 280 TVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340 (601)
Q Consensus 280 ~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~G 340 (601)
+|||||||+|||+.++..++++|+++. +..|+|||++|||++++..+||||++|.++
T Consensus 406 lLlLDEPT~gLD~~~~~~i~~~l~~l~----~~~g~tvi~vsHdl~~~~~~aDri~vl~~~ 462 (538)
T 3ozx_A 406 LYVLDQPSSYLDVEERYIVAKAIKRVT----RERKAVTFIIDHDLSIHDYIADRIIVFKGE 462 (538)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHH----HHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHH----HhCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999984 235899999999999999999999999753
No 87
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.97 E-value=8.3e-32 Score=300.59 Aligned_cols=198 Identities=20% Similarity=0.273 Sum_probs=159.2
Q ss_pred cchhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccC
Q psy7365 46 GAYVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDI 119 (601)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~ 119 (601)
+..+..+++|++.|++ ..++++||++.+ +||||| ||||| .++|+|+++|++|+|.+
T Consensus 284 ~~~~l~~~~l~~~~~~-----~~l~~~~~~i~~Ge~~~i~G~NGs--GKSTL------lk~l~Gl~~p~~G~i~~----- 345 (538)
T 1yqt_A 284 RETLVTYPRLVKDYGS-----FRLEVEPGEIKKGEVIGIVGPNGI--GKTTF------VKMLAGVEEPTEGKIEW----- 345 (538)
T ss_dssp CCEEEEECCEEEEETT-----EEEEECCEEEETTCEEEEECCTTS--SHHHH------HHHHHTSSCCSBCCCCC-----
T ss_pred CCeEEEEeeEEEEECC-----EEEEeCccccCCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCeEEEE-----
Confidence 3455668999998754 258888998877 999999 56655 57999999999999975
Q ss_pred CCchHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchh
Q psy7365 120 RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVK 199 (601)
Q Consensus 120 ~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~ 199 (601)
...+||+||++..++.+||.|++.+.... +.. ..+++.++++.+|+.+..++++.+|||||||||+|||
T Consensus 346 -------~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAr 414 (538)
T 1yqt_A 346 -------DLTVAYKPQYIKADYEGTVYELLSKIDAS-KLN---SNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAA 414 (538)
T ss_dssp -------CCCEEEECSSCCCCCSSBHHHHHHHHHHH-HHT---CHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHH
T ss_pred -------CceEEEEecCCcCCCCCcHHHHHHhhhcc-CCC---HHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHH
Confidence 23699999999877889999888654111 111 1345788999999999999999999999999997544
Q ss_pred hhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCc
Q psy7365 200 VWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAS 279 (601)
Q Consensus 200 ~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 279 (601)
++ +.+ |+
T Consensus 415 aL--------------------------------------~~~-----------------------------------p~ 421 (538)
T 1yqt_A 415 TL--------------------------------------LRD-----------------------------------AD 421 (538)
T ss_dssp HH--------------------------------------TSC-----------------------------------CS
T ss_pred HH--------------------------------------HhC-----------------------------------CC
Confidence 32 232 58
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecC--CccccccCcc
Q psy7365 280 TVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAA--GKLQCCGSSV 349 (601)
Q Consensus 280 ~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~--GkIv~~G~~~ 349 (601)
+|||||||+|||+.++..++++|+++. +..|.|||++|||++++..+|||+++|.+ |++...+++.
T Consensus 422 lLlLDEPt~~LD~~~~~~i~~~l~~l~----~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~ 489 (538)
T 1yqt_A 422 IYLLDEPSAYLDVEQRLAVSRAIRHLM----EKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPM 489 (538)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHH----HHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCE
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHH----HhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHH
Confidence 999999999999999999999999873 12489999999999999999999999985 6665566553
No 88
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.97 E-value=5.3e-31 Score=268.85 Aligned_cols=185 Identities=18% Similarity=0.260 Sum_probs=153.0
Q ss_pred cchhHHHhcCCEEEEecCCccccccCccccc------cccccccccccccCCcccccccc-cCCCCcccCCCCCHHHHHH
Q psy7365 322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK------NSFARGYYLSLDMKSAPQKSYIG-YCPQFDALNDRLTPREHLE 394 (601)
Q Consensus 322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk------~~~g~g~~igld~~~~~~~~~ig-~v~Q~~~l~~~lTv~E~L~ 394 (601)
+++++... ++.+++++... +|++++++ +..|+.++.+.+......++++| |+||++.+ .+|++||+.
T Consensus 22 ~~vsl~i~-Ge~~~i~G~NG---sGKSTLlk~l~Gl~p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv~enl~ 95 (263)
T 2pjz_A 22 ENINLEVN-GEKVIILGPNG---SGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTVNDIVY 95 (263)
T ss_dssp EEEEEEEC-SSEEEEECCTT---SSHHHHHHHHTTSSCCEEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBHHHHHH
T ss_pred EeeeEEEC-CEEEEEECCCC---CCHHHHHHHHhCCCCCCcEEEECCEECcchHHhhheEEEeCCCCcc--CCcHHHHHH
Confidence 88999999 99999997522 45554432 33344433343332111256799 99999877 899999999
Q ss_pred HhHHhcCCChhHHHHHHHHHHHHcCCC-cccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHH
Q psy7365 395 FYSRVRNLPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCI 473 (601)
Q Consensus 395 ~~~~~~g~~~~~~~~~~~~lLe~~~L~-~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL 473 (601)
++..++.. ..++++++++.++|. +..++++.+||||||||++||+||+++|++|||||||+|||+.+++.++++|
T Consensus 96 ~~~~~~~~----~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L 171 (263)
T 2pjz_A 96 LYEELKGL----DRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYI 171 (263)
T ss_dssp HHHHHTCC----CHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHH
T ss_pred Hhhhhcch----HHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHH
Confidence 87654422 235688999999999 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCcEEEEEccChhHHHhhCC-EEEEEeCCEEEEecCHHHHHH
Q psy7365 474 ERAVSEGRCVILTSHNMEECEALCT-KLTIMVNGQFTCLGSATHLKS 519 (601)
Q Consensus 474 ~~l~~~G~tVllsTHdl~e~~~l~d-rv~iL~~G~iv~~G~~~~L~~ 519 (601)
+++++ |||++|||++++..+|| |+++|++|++++.|+++++.+
T Consensus 172 ~~~~~---tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 172 KEYGK---EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp HHSCS---EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred HHhcC---cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 98743 99999999999999999 999999999999999999874
No 89
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.97 E-value=3.5e-31 Score=271.30 Aligned_cols=197 Identities=16% Similarity=0.180 Sum_probs=155.0
Q ss_pred cEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC---cccccccccCCCCcccC
Q psy7365 315 RTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS---APQKSYIGYCPQFDALN 384 (601)
Q Consensus 315 ~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~---~~~~~~ig~v~Q~~~l~ 384 (601)
+.++ +++++...-++.+++++... +|++++++ +..|..++.+.++.. ...++.|||+||++.++
T Consensus 32 ~~vl---~~vsl~i~~Ge~~~i~G~nG---sGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~ 105 (271)
T 2ixe_A 32 VQVL---QGLTFTLYPGKVTALVGPNG---SGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLF 105 (271)
T ss_dssp SCCE---EEEEEEECTTCEEEEECSTT---SSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCC
T ss_pred ceee---EeeEEEECCCCEEEEECCCC---CCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccc
Confidence 4555 88888889999999997522 55555433 334444444444322 12356799999999888
Q ss_pred CCCCHHHHHHHhHHhcCCChhHH-----HHHHHHHHHHc--CCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECC
Q psy7365 385 DRLTPREHLEFYSRVRNLPSVLL-----NTIVNESLNKF--ALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEP 457 (601)
Q Consensus 385 ~~lTv~E~L~~~~~~~g~~~~~~-----~~~~~~lLe~~--~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEP 457 (601)
+ .||+||+.++..... ..... ...+.++++.+ ++....++++.+|||||||||+|||||+.+|++||||||
T Consensus 106 ~-~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEP 183 (271)
T 2ixe_A 106 G-RSFRENIAYGLTRTP-TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNA 183 (271)
T ss_dssp S-SBHHHHHHTTCSSCC-CHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred c-ccHHHHHhhhcccCC-hHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 7 599999987532211 10111 12346678888 788888999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365 458 TSGMDPGARRFLWTCIERAVS-EGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK 520 (601)
Q Consensus 458 TsGLD~~~~~~i~~lL~~l~~-~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~ 520 (601)
|+|||+.+++.++++|+++.+ +|+|||++|||++++.. ||||++|++|++++.|+++++...
T Consensus 184 ts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 246 (271)
T 2ixe_A 184 TSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFLKEGSVCEQGTHLQLMER 246 (271)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEETTEEEEEECHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999864 49999999999999975 999999999999999999998754
No 90
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.97 E-value=6.7e-31 Score=265.66 Aligned_cols=192 Identities=18% Similarity=0.280 Sum_probs=150.5
Q ss_pred CcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCc---ccccccccCCCCccc
Q psy7365 314 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSA---PQKSYIGYCPQFDAL 383 (601)
Q Consensus 314 G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~---~~~~~ig~v~Q~~~l 383 (601)
++.++ +++++...-++.+++++... +|++++++ +..|..++.+.+.... ..++.|||+||++.+
T Consensus 21 ~~~vl---~~vsl~i~~Ge~~~i~G~nG---sGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l 94 (247)
T 2ff7_A 21 SPVIL---DNINLSIKQGEVIGIVGRSG---SGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVL 94 (247)
T ss_dssp SCEEE---EEEEEEEETTCEEEEECSTT---SSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCC
T ss_pred Cccee---eeeEEEEcCCCEEEEECCCC---CCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCcc
Confidence 35555 88999999999999998522 55555433 3344444555444321 235679999999988
Q ss_pred CCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCccc-----------ccccCcCChHHHHHHHHHHHHhCCCCEE
Q psy7365 384 NDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYS-----------DREVRTLSGGNKRKLSTAIALLGNTPLI 452 (601)
Q Consensus 384 ~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~-----------~~~~~~LSgGqkQRl~lA~AL~~~P~lL 452 (601)
|+ .||+||+.++.. ... .+++.++++.+++.+.. ++++.+|||||||||+|||||+.+|++|
T Consensus 95 ~~-~tv~enl~~~~~--~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~ll 167 (247)
T 2ff7_A 95 LN-RSIIDNISLANP--GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKIL 167 (247)
T ss_dssp TT-SBHHHHHTTTCT--TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEE
T ss_pred cc-ccHHHHHhccCC--CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 86 699999987521 111 23456677777765443 4456899999999999999999999999
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365 453 FLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK 520 (601)
Q Consensus 453 lLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~ 520 (601)
||||||+|||+.+++.++++|+++. +|+|||++|||+++++. |||+++|++|++++.|+++++...
T Consensus 168 lLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 233 (247)
T 2ff7_A 168 IFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKELLSE 233 (247)
T ss_dssp EECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGGGTT-SSEEEEEETTEEEEEECHHHHHTS
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999984 69999999999999875 999999999999999999998653
No 91
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.96 E-value=9.8e-31 Score=263.68 Aligned_cols=193 Identities=19% Similarity=0.267 Sum_probs=152.4
Q ss_pred CcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC---cccccccccCCCCccc
Q psy7365 314 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS---APQKSYIGYCPQFDAL 383 (601)
Q Consensus 314 G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~---~~~~~~ig~v~Q~~~l 383 (601)
+.+++ +++++...-++.+++++... +|++++++ +..|...+.+.+... ...++.+||+||++.+
T Consensus 14 ~~~vl---~~vsl~i~~Ge~~~i~G~nG---sGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l 87 (243)
T 1mv5_A 14 SEQIL---RDISFEAQPNSIIAFAGPSG---GGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAI 87 (243)
T ss_dssp SSCSE---EEEEEEECTTEEEEEECCTT---SSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCC
T ss_pred CCceE---EEeEEEEcCCCEEEEECCCC---CCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCcc
Confidence 34555 88888888999999997522 55555433 334444444444322 2346779999999988
Q ss_pred CCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCccccc-----------ccCcCChHHHHHHHHHHHHhCCCCEE
Q psy7365 384 NDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDR-----------EVRTLSGGNKRKLSTAIALLGNTPLI 452 (601)
Q Consensus 384 ~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~-----------~~~~LSgGqkQRl~lA~AL~~~P~lL 452 (601)
|+ .||+||+.++.. .... .+++.++++.+++.+..++ ++.+|||||||||+|||||+++|++|
T Consensus 88 ~~-~tv~enl~~~~~-~~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ll 161 (243)
T 1mv5_A 88 MA-GTIRENLTYGLE-GDYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKIL 161 (243)
T ss_dssp CC-EEHHHHTTSCTT-SCSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred cc-ccHHHHHhhhcc-CCCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 87 599999987421 1111 2456788888888766544 46799999999999999999999999
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365 453 FLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK 520 (601)
Q Consensus 453 lLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~ 520 (601)
||||||+|||+.+++.+++.|+++. +|+|||++|||++++. .|||+++|++|+++..|+++++.+.
T Consensus 162 lLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (243)
T 1mv5_A 162 MLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLSTIV-DADKIYFIEKGQITGSGKHNELVAT 227 (243)
T ss_dssp EEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHHHH-HCSEEEEEETTEECCCSCHHHHHHH
T ss_pred EEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChHHHH-hCCEEEEEECCEEEEeCCHHHHHhc
Confidence 9999999999999999999999987 6999999999999986 5999999999999999999998653
No 92
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.96 E-value=4.2e-30 Score=267.46 Aligned_cols=192 Identities=20% Similarity=0.290 Sum_probs=150.4
Q ss_pred CcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCc---ccccccccCCCCccc
Q psy7365 314 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSA---PQKSYIGYCPQFDAL 383 (601)
Q Consensus 314 G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~---~~~~~ig~v~Q~~~l 383 (601)
+..++ +++++...-++.+++++... +|++++++ +..|..++.+.++... ..++.||||||++.+
T Consensus 66 ~~~vL---~~isl~i~~Ge~vaivG~sG---sGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~l 139 (306)
T 3nh6_A 66 GRETL---QDVSFTVMPGQTLALVGPSG---AGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVL 139 (306)
T ss_dssp TCEEE---EEEEEEECTTCEEEEESSSC---HHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCC
T ss_pred CCcee---eeeeEEEcCCCEEEEECCCC---chHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCcc
Confidence 45555 88999999999999998532 56655432 3345555555554432 246789999999988
Q ss_pred CCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCC-----------cccccccCcCChHHHHHHHHHHHHhCCCCEE
Q psy7365 384 NDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALG-----------HYSDREVRTLSGGNKRKLSTAIALLGNTPLI 452 (601)
Q Consensus 384 ~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~-----------~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lL 452 (601)
|+ .||+||+.|..... .. +++.++++.+++. ...++...+||||||||++|||||+.+|++|
T Consensus 140 f~-~Tv~eNi~~~~~~~--~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iL 212 (306)
T 3nh6_A 140 FN-DTIADNIRYGRVTA--GN----DEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGII 212 (306)
T ss_dssp CS-EEHHHHHHTTSTTC--CH----HHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred Cc-ccHHHHHHhhcccC--CH----HHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEE
Confidence 85 59999998753221 11 2344445544443 3445566899999999999999999999999
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365 453 FLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK 520 (601)
Q Consensus 453 lLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~ 520 (601)
||||||+|||+.++..+++.|+++. +++|+|++||+++.+.. ||||++|++|+|++.|+++++.+.
T Consensus 213 lLDEPts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv~~G~~~el~~~ 278 (306)
T 3nh6_A 213 LLDEATSALDTSNERAIQASLAKVC-ANRTTIVVAHRLSTVVN-ADQILVIKDGCIVERGRHEALLSR 278 (306)
T ss_dssp EEECCSSCCCHHHHHHHHHHHHHHH-TTSEEEEECCSHHHHHT-CSEEEEEETTEEEEEECHHHHHHH
T ss_pred EEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEEcChHHHHc-CCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999985 47999999999999987 999999999999999999999865
No 93
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.96 E-value=4.4e-31 Score=261.58 Aligned_cols=174 Identities=17% Similarity=0.213 Sum_probs=144.8
Q ss_pred cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCcccccccccCCCCcccCCCCCHHHHHH
Q psy7365 322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLE 394 (601)
Q Consensus 322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~~~~~~ig~v~Q~~~l~~~lTv~E~L~ 394 (601)
+++++...-++.+++++... +|++++++ +..|..++.+.+.. ..++.+||+||++.+++.+||+||+.
T Consensus 26 ~~vsl~i~~Ge~~~iiG~NG---sGKSTLlk~l~Gl~~p~~G~I~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~enl~ 100 (214)
T 1sgw_A 26 ERITMTIEKGNVVNFHGPNG---IGKTTLLKTISTYLKPLKGEIIYNGVPIT--KVKGKIFFLPEEIIVPRKISVEDYLK 100 (214)
T ss_dssp EEEEEEEETTCCEEEECCTT---SSHHHHHHHHTTSSCCSEEEEEETTEEGG--GGGGGEEEECSSCCCCTTSBHHHHHH
T ss_pred eeeEEEEcCCCEEEEECCCC---CCHHHHHHHHhcCCCCCCeEEEECCEEhh--hhcCcEEEEeCCCcCCCCCCHHHHHH
Confidence 88888888999999997422 55555443 33344444444433 34677999999999999999999999
Q ss_pred HhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q psy7365 395 FYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIE 474 (601)
Q Consensus 395 ~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~ 474 (601)
++...++. ..+ .++++++++.++|.+. ++++.+||||||||++||+||+.+|++|||||||+|||+.+++.++++|+
T Consensus 101 ~~~~~~~~-~~~-~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~ 177 (214)
T 1sgw_A 101 AVASLYGV-KVN-KNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSIL 177 (214)
T ss_dssp HHHHHTTC-CCC-HHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHH
T ss_pred HHHHhcCC-chH-HHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHH
Confidence 87665543 222 4678899999999988 99999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCcEEEEEccChhHHHhhCCEEEEE
Q psy7365 475 RAVSEGRCVILTSHNMEECEALCTKLTIM 503 (601)
Q Consensus 475 ~l~~~G~tVllsTHdl~e~~~l~drv~iL 503 (601)
+++++|+|||++|||+++++.+|||++++
T Consensus 178 ~~~~~g~tiiivtHd~~~~~~~~d~v~~~ 206 (214)
T 1sgw_A 178 EILKEKGIVIISSREELSYCDVNENLHKY 206 (214)
T ss_dssp HHHHHHSEEEEEESSCCTTSSEEEEGGGG
T ss_pred HHHhCCCEEEEEeCCHHHHHHhCCEEEEe
Confidence 99767899999999999999999998754
No 94
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.6e-30 Score=289.63 Aligned_cols=195 Identities=19% Similarity=0.164 Sum_probs=153.2
Q ss_pred cccccccccCCCccceeecceEEeec-----------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC
Q psy7365 53 ESLSENRDKLGIDSYGISDTSLEEQP-----------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT 121 (601)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~ 121 (601)
+++++.|.. ...+++|+||++.+ +||||| ||||| .++|+|+++|++|+. +.
T Consensus 350 ~~~~~~y~~---~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGs--GKSTL------lk~l~Gl~~p~~G~~------~~- 411 (608)
T 3j16_B 350 ASRAFSYPS---LKKTQGDFVLNVEEGEFSDSEILVMMGENGT--GKTTL------IKLLAGALKPDEGQD------IP- 411 (608)
T ss_dssp SSSCCEECC---EEEECSSCEEEECCEECCTTCEEEEESCTTS--SHHHH------HHHHHTSSCCSBCCC------CC-
T ss_pred cceeEEecC---cccccCceEEEEecCccccceEEEEECCCCC--cHHHH------HHHHhcCCCCCCCcC------cc-
Confidence 445555432 23478999999854 899999 56655 579999999999962 11
Q ss_pred chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhh
Q psy7365 122 DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVW 201 (601)
Q Consensus 122 ~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~ 201 (601)
+..++|+||++..++..||.|++.... .+... ....+.++++.+||.+..++++.+|||||||||+|||||
T Consensus 412 -----~~~i~~~~q~~~~~~~~tv~e~~~~~~--~~~~~--~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL 482 (608)
T 3j16_B 412 -----KLNVSMKPQKIAPKFPGTVRQLFFKKI--RGQFL--NPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLAL 482 (608)
T ss_dssp -----SCCEEEECSSCCCCCCSBHHHHHHHHC--SSTTT--SHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHT
T ss_pred -----CCcEEEecccccccCCccHHHHHHHHh--hcccc--cHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHH
Confidence 346999999987766789999875432 12111 123567899999999999999999999999999865433
Q ss_pred cchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEE
Q psy7365 202 FNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTV 281 (601)
Q Consensus 202 ~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~l 281 (601)
. ++ |++|
T Consensus 483 ~--------------------------------------~~-----------------------------------p~lL 489 (608)
T 3j16_B 483 G--------------------------------------IP-----------------------------------ADIY 489 (608)
T ss_dssp T--------------------------------------SC-----------------------------------CSEE
T ss_pred H--------------------------------------hC-----------------------------------CCEE
Confidence 2 22 5899
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecC--CccccccCcccc
Q psy7365 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAA--GKLQCCGSSVFL 351 (601)
Q Consensus 282 iLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~--GkIv~~G~~~lL 351 (601)
||||||+|||+.++..++++|+++. +..|+|||++|||++++..+|||+++|.+ |++...|++..+
T Consensus 490 lLDEPT~gLD~~~~~~i~~ll~~l~----~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~ 557 (608)
T 3j16_B 490 LIDEPSAYLDSEQRIICSKVIRRFI----LHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESL 557 (608)
T ss_dssp EECCTTTTCCHHHHHHHHHHHHHHH----HHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEH
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHH----HhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHH
Confidence 9999999999999999999999874 23589999999999999999999999985 888888876543
No 95
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.96 E-value=1.2e-29 Score=296.94 Aligned_cols=201 Identities=22% Similarity=0.210 Sum_probs=151.4
Q ss_pred cchhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccC
Q psy7365 46 GAYVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDI 119 (601)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~ 119 (601)
+..+..++||++.|++ .+.++++|+||++.+ +||||| ||||| .++|+|+++|++|+|.++|.
T Consensus 668 ~~~mL~v~nLs~~Y~g--~~~~iL~dVSl~I~~GeivaIiGpNGS--GKSTL------LklLaGll~P~sG~I~~~~~-- 735 (986)
T 2iw3_A 668 QKAIVKVTNMEFQYPG--TSKPQITDINFQCSLSSRIAVIGPNGA--GKSTL------INVLTGELLPTSGEVYTHEN-- 735 (986)
T ss_dssp TSEEEEEEEEEECCTT--CSSCSEEEEEEEEETTCEEEECSCCCH--HHHHH------HHHHTTSSCCSEEEEEECTT--
T ss_pred CCceEEEEeeEEEeCC--CCceeeeccEEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCceEEEEcCc--
Confidence 3456779999999853 235689999999988 999999 56654 57999999999999999863
Q ss_pred CCchHHhcccEEEEccCCC----CCCCCCHHHHHHHhHhh----------------------------------------
Q psy7365 120 RTDMTTIRRSLGVCPQYNA----LFDKLTVEEHMWFYSQL---------------------------------------- 155 (601)
Q Consensus 120 ~~~~~~~~~~ig~v~Q~~~----~~~~~tv~e~l~~~~~~---------------------------------------- 155 (601)
.++||++|++. ...+.|+.+++.+..+.
T Consensus 736 --------~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~ 807 (986)
T 2iw3_A 736 --------CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHS 807 (986)
T ss_dssp --------CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEE
T ss_pred --------cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhh
Confidence 14778877752 12245666666442100
Q ss_pred -------------------------------------------------------------cCCChHHHHHHHHHHHHHc
Q psy7365 156 -------------------------------------------------------------KQVPKDLAQLEISNMIGDL 174 (601)
Q Consensus 156 -------------------------------------------------------------~~~~~~~~~~~~~~~l~~~ 174 (601)
.+..+...+.++.++++.+
T Consensus 808 r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~l 887 (986)
T 2iw3_A 808 RRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSML 887 (986)
T ss_dssp EEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHT
T ss_pred hhhhcccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHc
Confidence 0000111235688999999
Q ss_pred CCCc-c-cCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHH
Q psy7365 175 GIPH-K-RTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMA 252 (601)
Q Consensus 175 gl~~-~-~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 252 (601)
||.. . .++++++|||||||||+|||+| +++
T Consensus 888 GL~~~~~~~~~~~~LSGGQkQRVaLArAL--------------------------------------~~~---------- 919 (986)
T 2iw3_A 888 GLDPEIVSHSRIRGLSGGQKVKLVLAAGT--------------------------------------WQR---------- 919 (986)
T ss_dssp TCCHHHHHHSCGGGCCHHHHHHHHHHHHH--------------------------------------TTC----------
T ss_pred CCCchhhcCCCccccCHHHHHHHHHHHHH--------------------------------------HhC----------
Confidence 9985 3 6889999999999999754432 233
Q ss_pred HHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCC
Q psy7365 253 LETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGD 332 (601)
Q Consensus 253 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~D 332 (601)
|++|||||||+|||+.++..+.+.|+++ |.|||++|||++++..+||
T Consensus 920 -------------------------P~LLLLDEPT~gLD~~s~~~L~~~L~~~--------g~tVIiISHD~e~v~~l~D 966 (986)
T 2iw3_A 920 -------------------------PHLIVLDEPTNYLDRDSLGALSKALKEF--------EGGVIIITHSAEFTKNLTE 966 (986)
T ss_dssp -------------------------CSEEEEECGGGTCCHHHHHHHHHHHHSC--------SSEEEEECSCHHHHTTTCC
T ss_pred -------------------------CCEEEEECCccCCCHHHHHHHHHHHHHh--------CCEEEEEECCHHHHHHhCC
Confidence 5899999999999999999999988642 5699999999999999999
Q ss_pred EEEEecCCccccccC
Q psy7365 333 RIAIIAAGKLQCCGS 347 (601)
Q Consensus 333 rv~vL~~GkIv~~G~ 347 (601)
++++|.+|+++..|.
T Consensus 967 rVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 967 EVWAVKDGRMTPSGH 981 (986)
T ss_dssp EEECCBTTBCCC---
T ss_pred EEEEEECCEEEEeCC
Confidence 999999999876653
No 96
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.96 E-value=2.6e-29 Score=255.95 Aligned_cols=187 Identities=18% Similarity=0.232 Sum_probs=146.0
Q ss_pred cchhHHHhcCCEEEEecCCccccccCcccccc------ccccccccccccCC---cccccccccCCCCcccCCCCCHHHH
Q psy7365 322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN------SFARGYYLSLDMKS---APQKSYIGYCPQFDALNDRLTPREH 392 (601)
Q Consensus 322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk~------~~g~g~~igld~~~---~~~~~~ig~v~Q~~~l~~~lTv~E~ 392 (601)
+++++...-++.+++++... +|++++++. ..|..++.+.+... ...++.+||+||++.+|+ .||+||
T Consensus 37 ~~vsl~i~~Ge~~~i~G~nG---sGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~en 112 (260)
T 2ghi_A 37 KSINFFIPSGTTCALVGHTG---SGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-ETIKYN 112 (260)
T ss_dssp EEEEEEECTTCEEEEECSTT---SSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-EEHHHH
T ss_pred EeeEEEECCCCEEEEECCCC---CCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-cCHHHH
Confidence 88888888999999997522 555554321 13444444444322 123567999999998886 699999
Q ss_pred HHHhHHhcCCChhHHHHHHHHHHHHcCCCcc-----------cccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCC
Q psy7365 393 LEFYSRVRNLPSVLLNTIVNESLNKFALGHY-----------SDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGM 461 (601)
Q Consensus 393 L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~-----------~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGL 461 (601)
+.+... ... .+++.++++.+++.+. .++++.+|||||||||+|||||+++|++|||||||+||
T Consensus 113 l~~~~~--~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~L 186 (260)
T 2ghi_A 113 ILYGKL--DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSL 186 (260)
T ss_dssp HHTTCT--TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTT
T ss_pred HhccCC--CCC----HHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccC
Confidence 987421 111 2345667777776432 24578899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365 462 DPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK 520 (601)
Q Consensus 462 D~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~ 520 (601)
|+.+++.++++|+++.+ |+|||++|||++++. .|||+++|++|+++..|+++++.+.
T Consensus 187 D~~~~~~i~~~l~~l~~-~~tviivtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 243 (260)
T 2ghi_A 187 DSKTEYLFQKAVEDLRK-NRTLIIIAHRLSTIS-SAESIILLNKGKIVEKGTHKDLLKL 243 (260)
T ss_dssp CHHHHHHHHHHHHHHTT-TSEEEEECSSGGGST-TCSEEEEEETTEEEEEECHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHH-hCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999854 899999999999986 4999999999999999999998654
No 97
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.96 E-value=9.1e-30 Score=273.00 Aligned_cols=191 Identities=18% Similarity=0.247 Sum_probs=154.6
Q ss_pred CcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc------cccccccccccccCCcc---cccccccCCCCcccC
Q psy7365 314 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK------NSFARGYYLSLDMKSAP---QKSYIGYCPQFDALN 384 (601)
Q Consensus 314 G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk------~~~g~g~~igld~~~~~---~~~~ig~v~Q~~~l~ 384 (601)
+..++ +++++...-++.+++++... +|++++++ ...|+.++.+.++...+ .++.+||+||++.+|
T Consensus 33 ~~~~L---~~vsl~i~~Ge~~~llGpsG---sGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf 106 (390)
T 3gd7_A 33 GNAIL---ENISFSISPGQRVGLLGRTG---SGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIF 106 (390)
T ss_dssp SCCSE---EEEEEEECTTCEEEEEESTT---SSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCC
T ss_pred CeEEe---eceeEEEcCCCEEEEECCCC---ChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHHhCCEEEEcCCcccC
Confidence 34455 88999999999999998522 55555432 13345555555544322 357899999999988
Q ss_pred CCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCc-----------CChHHHHHHHHHHHHhCCCCEEE
Q psy7365 385 DRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRT-----------LSGGNKRKLSTAIALLGNTPLIF 453 (601)
Q Consensus 385 ~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~-----------LSgGqkQRl~lA~AL~~~P~lLl 453 (601)
+ +||+||+.++. .. .++++.++++.++|.++.++++.+ |||||||||+|||||+.+|++||
T Consensus 107 ~-~tv~enl~~~~---~~----~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLL 178 (390)
T 3gd7_A 107 S-GTFRKNLDPNA---AH----SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILL 178 (390)
T ss_dssp S-EEHHHHHCTTC---CS----CHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred c-cCHHHHhhhcc---cc----CHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 7 69999996432 11 235678899999999999999988 99999999999999999999999
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365 454 LDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK 520 (601)
Q Consensus 454 LDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~ 520 (601)
|||||+|||+..+.++++.|+++. +|+|+|++|||++.+ ..||||++|++|+|+..|+++++.+.
T Consensus 179 LDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e~~-~~aDri~vl~~G~i~~~g~~~el~~~ 243 (390)
T 3gd7_A 179 LDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIEAM-LECDQFLVIEENKVRQYDSILELYHY 243 (390)
T ss_dssp EESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSGGG-TTCSEEEEEETTEEEEESSHHHHHHC
T ss_pred EeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHHHH-HhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999998863 589999999998655 56999999999999999999998653
No 98
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.95 E-value=1.7e-28 Score=245.26 Aligned_cols=175 Identities=20% Similarity=0.260 Sum_probs=134.2
Q ss_pred cchhHHHhcCCEEEEecCCccccccCcccccc-------ccccccccccccCCcccccccccCCCCcccCCCCCHHHHHH
Q psy7365 322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN-------SFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLE 394 (601)
Q Consensus 322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk~-------~~g~g~~igld~~~~~~~~~ig~v~Q~~~l~~~lTv~E~L~ 394 (601)
+++++...-++.+++++... +|++++++. ..|...+ ..++||+||++.+++. ||+||+.
T Consensus 25 ~~vsl~i~~Ge~~~i~G~nG---sGKSTLl~~l~Gl~~p~~G~i~~----------~g~i~~v~q~~~~~~~-tv~enl~ 90 (229)
T 2pze_A 25 KDINFKIERGQLLAVAGSTG---AGKTSLLMMIMGELEPSEGKIKH----------SGRISFCSQFSWIMPG-TIKENII 90 (229)
T ss_dssp EEEEEEEETTCEEEEECCTT---SSHHHHHHHHTTSSCCSEEEEEE----------CSCEEEECSSCCCCSB-CHHHHHH
T ss_pred eeeEEEEcCCCEEEEECCCC---CCHHHHHHHHhCCCcCCccEEEE----------CCEEEEEecCCcccCC-CHHHHhh
Confidence 88888888999999997532 566665442 2222211 1258999999988875 9999998
Q ss_pred HhHHhcCCChhHHHHHHHHHHHHcCCCc-----------ccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCH
Q psy7365 395 FYSRVRNLPSVLLNTIVNESLNKFALGH-----------YSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDP 463 (601)
Q Consensus 395 ~~~~~~g~~~~~~~~~~~~lLe~~~L~~-----------~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~ 463 (601)
++.. ... ....++++.+++.+ ..++++.+||||||||++||+||+++|++|||||||+|||+
T Consensus 91 ~~~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~ 163 (229)
T 2pze_A 91 FGVS---YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 163 (229)
T ss_dssp TTSC---CCH----HHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCH
T ss_pred ccCC---cCh----HHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCH
Confidence 7421 111 12233444444432 22345689999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365 464 GARRFLWTC-IERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 519 (601)
Q Consensus 464 ~~~~~i~~l-L~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~ 519 (601)
.+++.+++. ++++. +|+|||++|||++++. .|||+++|++|+++..|+++++.+
T Consensus 164 ~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~ 218 (229)
T 2pze_A 164 LTEKEIFESCVCKLM-ANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQN 218 (229)
T ss_dssp HHHHHHHHHCCCCCT-TTSEEEEECCCHHHHH-HCSEEEEEETTEEEEEECHHHHHT
T ss_pred HHHHHHHHHHHHHhh-CCCEEEEEcCChHHHH-hCCEEEEEECCEEEEECCHHHHHh
Confidence 999999997 45554 4899999999999987 499999999999999999999864
No 99
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.95 E-value=2.9e-28 Score=244.83 Aligned_cols=179 Identities=20% Similarity=0.276 Sum_probs=135.9
Q ss_pred cchhHHHhcCCEEEEecCCccccccCcccccc-------ccccccccccccCCcccccccccCCCCcccCCCCCHHHHHH
Q psy7365 322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN-------SFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLE 394 (601)
Q Consensus 322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk~-------~~g~g~~igld~~~~~~~~~ig~v~Q~~~l~~~lTv~E~L~ 394 (601)
+++++...-++.+++++... +|++++++. ..|+..+. ..+||+||++.+ +.+||+||+.
T Consensus 22 ~~vsl~i~~Ge~~~i~G~nG---sGKSTLl~~l~Gl~~p~~G~I~~~----------g~i~~v~Q~~~~-~~~tv~enl~ 87 (237)
T 2cbz_A 22 NGITFSIPEGALVAVVGQVG---CGKSSLLSALLAEMDKVEGHVAIK----------GSVAYVPQQAWI-QNDSLRENIL 87 (237)
T ss_dssp EEEEEEECTTCEEEEECSTT---SSHHHHHHHHTTCSEEEEEEEEEC----------SCEEEECSSCCC-CSEEHHHHHH
T ss_pred eeeEEEECCCCEEEEECCCC---CCHHHHHHHHhcCCCCCCceEEEC----------CEEEEEcCCCcC-CCcCHHHHhh
Confidence 78888888999999998532 566665442 22222111 258999999864 5789999998
Q ss_pred HhHHhcCCChhHHHHHHHH---HHHHcCCCc-----ccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHH
Q psy7365 395 FYSRVRNLPSVLLNTIVNE---SLNKFALGH-----YSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGAR 466 (601)
Q Consensus 395 ~~~~~~g~~~~~~~~~~~~---lLe~~~L~~-----~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~ 466 (601)
++... .... .+++.+ +++.+++.+ ..++++.+||||||||++||+||+.+|++|||||||+|||+.++
T Consensus 88 ~~~~~---~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~ 163 (237)
T 2cbz_A 88 FGCQL---EEPY-YRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVG 163 (237)
T ss_dssp TTSCC---CTTH-HHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHH
T ss_pred Ccccc---CHHH-HHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHH
Confidence 75321 1111 112222 222333321 35788999999999999999999999999999999999999999
Q ss_pred HHHHHHHH---HHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365 467 RFLWTCIE---RAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK 520 (601)
Q Consensus 467 ~~i~~lL~---~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~ 520 (601)
..+++.|. ++ .+|+|||++|||++++. .|||+++|++|++++.|+++++.+.
T Consensus 164 ~~i~~~l~~~~~~-~~~~tviivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~ 218 (237)
T 2cbz_A 164 KHIFENVIGPKGM-LKNKTRILVTHSMSYLP-QVDVIIVMSGGKISEMGSYQELLAR 218 (237)
T ss_dssp HHHHHHTTSTTST-TTTSEEEEECSCSTTGG-GSSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHhh-cCCCEEEEEecChHHHH-hCCEEEEEeCCEEEEeCCHHHHhhc
Confidence 99999995 34 35899999999999986 6999999999999999999998654
No 100
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.95 E-value=8.1e-28 Score=270.93 Aligned_cols=188 Identities=16% Similarity=0.269 Sum_probs=149.4
Q ss_pred cchhHHHhcCCEEEEecCCccccccCcccc-------ccccccccccccccCC---cccccccccCCCCcccCCCCCHHH
Q psy7365 322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFL-------KNSFARGYYLSLDMKS---APQKSYIGYCPQFDALNDRLTPRE 391 (601)
Q Consensus 322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lL-------k~~~g~g~~igld~~~---~~~~~~ig~v~Q~~~l~~~lTv~E 391 (601)
+++++..+.++.+++++... +|+++++ ++..|+..+.|.+... ...++++||+||++.+|+. |++|
T Consensus 360 ~~i~l~i~~G~~~~ivG~sG---sGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~e 435 (582)
T 3b5x_A 360 SHVSFSIPQGKTVALVGRSG---SGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND-TIAN 435 (582)
T ss_pred ccceEEECCCCEEEEECCCC---CCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccc-cHHH
Confidence 88888888899999997522 5555543 2344555555544432 2346789999999998874 9999
Q ss_pred HHHHhHHhcCCChhHHHHHHHHHHHHcCCCccccc-----------ccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCC
Q psy7365 392 HLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDR-----------EVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSG 460 (601)
Q Consensus 392 ~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~-----------~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsG 460 (601)
|+.+... .+. .++++.++++.+++.+..++ +..+||||||||++|||||+++|++|+|||||+|
T Consensus 436 ni~~~~~-~~~----~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~ 510 (582)
T 3b5x_A 436 NIAYAAE-GEY----TREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSA 510 (582)
T ss_pred HHhccCC-CCC----CHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccc
Confidence 9987431 111 13456777888877655444 4579999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365 461 MDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK 520 (601)
Q Consensus 461 LD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~ 520 (601)
||+.+++.+++.|+++. +|+|+|++||+++.+. .||||++|++|+++..|+++++.+.
T Consensus 511 LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b5x_A 511 LDTESERAIQAALDELQ-KNKTVLVIAHRLSTIE-QADEILVVDEGEIIERGRHADLLAQ 568 (582)
T ss_pred CCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHH-hCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999985 4899999999999987 6999999999999999999998754
No 101
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.95 E-value=7.6e-28 Score=271.83 Aligned_cols=190 Identities=21% Similarity=0.270 Sum_probs=147.1
Q ss_pred cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC---cccccccccCCCCcccCCCCCHHH
Q psy7365 322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS---APQKSYIGYCPQFDALNDRLTPRE 391 (601)
Q Consensus 322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~---~~~~~~ig~v~Q~~~l~~~lTv~E 391 (601)
+++++..+.++.+++++... +|++++++ +..|+..+.|.+... ...++++||+||++.+|+ .|++|
T Consensus 361 ~~isl~i~~G~~~~ivG~sG---sGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~e 436 (595)
T 2yl4_A 361 QDFSLSIPSGSVTALVGPSG---SGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS-CSIAE 436 (595)
T ss_dssp EEEEEEECTTCEEEEECCTT---SSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCS-SBHHH
T ss_pred cceEEEEcCCCEEEEECCCC---CCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccC-CCHHH
Confidence 88888888999999997522 56665433 334555555555432 224578999999999887 59999
Q ss_pred HHHHhHHhcCCChhHHHHHHHHHHHHcCCCccc-------c----cccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCC
Q psy7365 392 HLEFYSRVRNLPSVLLNTIVNESLNKFALGHYS-------D----REVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSG 460 (601)
Q Consensus 392 ~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~-------~----~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsG 460 (601)
|+.+....+. ...+++++++++.+++.+.. + ++..+||||||||++|||||+++|++|||||||+|
T Consensus 437 ni~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~ 513 (595)
T 2yl4_A 437 NIAYGADDPS---SVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSA 513 (595)
T ss_dssp HHHTTSSSTT---TSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSS
T ss_pred HHhhcCCCcc---ccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccC
Confidence 9987532110 11234577888888775432 2 23489999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365 461 MDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK 520 (601)
Q Consensus 461 LD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~ 520 (601)
||+.+++.+++.|+++.+ |+|+|++||+++.+.. ||||++|++|++++.|+++++.+.
T Consensus 514 LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 571 (595)
T 2yl4_A 514 LDAENEYLVQEALDRLMD-GRTVLVIAHRLSTIKN-ANMVAVLDQGKITEYGKHEELLSK 571 (595)
T ss_dssp CCHHHHHHHHHHHHHHHT-TSEEEEECCCHHHHHH-SSEEEEEETTEEEEEECSCC----
T ss_pred CCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999865 8999999999999864 999999999999999999998653
No 102
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.94 E-value=1.1e-27 Score=269.82 Aligned_cols=188 Identities=16% Similarity=0.276 Sum_probs=148.6
Q ss_pred cchhHHHhcCCEEEEecCCccccccCcccc-------ccccccccccccccCCc---ccccccccCCCCcccCCCCCHHH
Q psy7365 322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFL-------KNSFARGYYLSLDMKSA---PQKSYIGYCPQFDALNDRLTPRE 391 (601)
Q Consensus 322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lL-------k~~~g~g~~igld~~~~---~~~~~ig~v~Q~~~l~~~lTv~E 391 (601)
+++++..+.++.+++++... +|+++++ ++..|+..+.|.+.... ..++++||+||++.+|+. |++|
T Consensus 360 ~~v~~~i~~G~~~~ivG~sG---sGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~e 435 (582)
T 3b60_A 360 RNINLKIPAGKTVALVGRSG---SGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVAN 435 (582)
T ss_dssp EEEEEEECTTCEEEEEECTT---SSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-BHHH
T ss_pred cceeEEEcCCCEEEEECCCC---CCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCC-CHHH
Confidence 77788888888888887522 5555543 23445555555554332 246789999999998874 9999
Q ss_pred HHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccc-----------cccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCC
Q psy7365 392 HLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSD-----------REVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSG 460 (601)
Q Consensus 392 ~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~-----------~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsG 460 (601)
|+.+... .+.+ ++++.++++.+++.+..+ ++..+||||||||++|||||+++|++++|||||+|
T Consensus 436 ni~~~~~-~~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~ 510 (582)
T 3b60_A 436 NIAYART-EEYS----REQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSA 510 (582)
T ss_dssp HHHTTTT-SCCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSS
T ss_pred HHhccCC-CCCC----HHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECcccc
Confidence 9987531 1122 345677777777755443 35589999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365 461 MDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK 520 (601)
Q Consensus 461 LD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~ 520 (601)
||+.+++.+++.|+++.+ |+|+|++||+++.+. .||||++|++|++++.|+++++.+.
T Consensus 511 LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b60_A 511 LDTESERAIQAALDELQK-NRTSLVIAHRLSTIE-QADEIVVVEDGIIVERGTHSELLAQ 568 (582)
T ss_dssp CCHHHHHHHHHHHHHHHT-TSEEEEECSCGGGTT-TCSEEEEEETTEEEEEECHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhC-CCEEEEEeccHHHHH-hCCEEEEEECCEEEEecCHHHHHHc
Confidence 999999999999999864 899999999999986 6999999999999999999999765
No 103
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.94 E-value=1.9e-27 Score=267.67 Aligned_cols=187 Identities=20% Similarity=0.288 Sum_probs=145.0
Q ss_pred cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC---cccccccccCCCCcccCCCCCHHH
Q psy7365 322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS---APQKSYIGYCPQFDALNDRLTPRE 391 (601)
Q Consensus 322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~---~~~~~~ig~v~Q~~~l~~~lTv~E 391 (601)
|++++..+.++.+++++... +|++++++ +..|+..+.|.+... ...++++||+||++.+|+. |++|
T Consensus 358 ~~isl~i~~G~~~~ivG~sG---sGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~e 433 (578)
T 4a82_A 358 KDINLSIEKGETVAFVGMSG---GGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVKE 433 (578)
T ss_dssp EEEEEEECTTCEEEEECSTT---SSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-BHHH
T ss_pred eeeEEEECCCCEEEEECCCC---ChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-cHHH
Confidence 77888888888998887522 45554432 334455555555432 2246789999999998876 9999
Q ss_pred HHHHhHHhcCCChhHHHHHHHHHHHHcCCCc-----------ccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCC
Q psy7365 392 HLEFYSRVRNLPSVLLNTIVNESLNKFALGH-----------YSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSG 460 (601)
Q Consensus 392 ~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~-----------~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsG 460 (601)
|+.+... ... .+++.+.++..++.+ ..+++..+||||||||++|||||+++|++++|||||+|
T Consensus 434 ni~~~~~--~~~----~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~ 507 (578)
T 4a82_A 434 NILLGRP--TAT----DEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSA 507 (578)
T ss_dssp HHGGGCS--SCC----HHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTT
T ss_pred HHhcCCC--CCC----HHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccc
Confidence 9987421 111 233555566555533 33445578999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365 461 MDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK 520 (601)
Q Consensus 461 LD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~ 520 (601)
||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||||++|++|++++.|+++++.+.
T Consensus 508 LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~el~~~ 565 (578)
T 4a82_A 508 LDLESESIIQEALDVLS-KDRTTLIVAHRLSTITH-ADKIVVIENGHIVETGTHRELIAK 565 (578)
T ss_dssp CCHHHHHHHHHHHHHHT-TTSEEEEECSSGGGTTT-CSEEEEEETTEEEEEECHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999874 57999999999999865 999999999999999999999764
No 104
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.94 E-value=1.5e-27 Score=269.01 Aligned_cols=187 Identities=21% Similarity=0.301 Sum_probs=144.6
Q ss_pred cchhHHHhcCCEEEEecCCccccccCcccc-------ccccccccccccccCCc---ccccccccCCCCcccCCCCCHHH
Q psy7365 322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFL-------KNSFARGYYLSLDMKSA---PQKSYIGYCPQFDALNDRLTPRE 391 (601)
Q Consensus 322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lL-------k~~~g~g~~igld~~~~---~~~~~ig~v~Q~~~l~~~lTv~E 391 (601)
+++++..+.++.+++++... +|+++++ ++..|+..+.+.+.... ..++++||+||++.+|+. |++|
T Consensus 360 ~~isl~i~~Ge~~~ivG~sG---sGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~e 435 (587)
T 3qf4_A 360 SGVNFSVKPGSLVAVLGETG---SGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSG-TIKE 435 (587)
T ss_dssp EEEEEEECTTCEEEEECSSS---SSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSE-EHHH
T ss_pred eceEEEEcCCCEEEEECCCC---CCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCc-cHHH
Confidence 67777778888888887422 4555443 23345555555554332 246789999999998865 9999
Q ss_pred HHHHhHHhcCCChhHHHHHHHHHHHHc-----------CCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCC
Q psy7365 392 HLEFYSRVRNLPSVLLNTIVNESLNKF-----------ALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSG 460 (601)
Q Consensus 392 ~L~~~~~~~g~~~~~~~~~~~~lLe~~-----------~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsG 460 (601)
|+.+... .... +++.+.++.. |++...++++.+||||||||++|||||+++|++|||||||++
T Consensus 436 ni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~ 509 (587)
T 3qf4_A 436 NLKWGRE--DATD----DEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSS 509 (587)
T ss_dssp HHTTTCS--SCCH----HHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTT
T ss_pred HHhccCC--CCCH----HHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCccc
Confidence 9976421 1111 2223333333 444455678889999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365 461 MDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK 520 (601)
Q Consensus 461 LD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~ 520 (601)
||+.+++.+.+.|+++. +|+|+|++||+++.+. .||||++|++|++++.|+++++.+.
T Consensus 510 LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~el~~~ 567 (587)
T 3qf4_A 510 VDPITEKRILDGLKRYT-KGCTTFIITQKIPTAL-LADKILVLHEGKVAGFGTHKELLEH 567 (587)
T ss_dssp SCHHHHHHHHHHHHHHS-TTCEEEEEESCHHHHT-TSSEEEEEETTEEEEEECHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCEEEEEecChHHHH-hCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999874 5899999999999986 7999999999999999999999764
No 105
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.94 E-value=1.8e-27 Score=268.97 Aligned_cols=187 Identities=19% Similarity=0.290 Sum_probs=146.3
Q ss_pred cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCc---ccccccccCCCCcccCCCCCHHH
Q psy7365 322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSA---PQKSYIGYCPQFDALNDRLTPRE 391 (601)
Q Consensus 322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~---~~~~~ig~v~Q~~~l~~~lTv~E 391 (601)
|++++..+.++.+++++... +|++++++ +..|+..+.|.+.... ..++++||+||++.+|+ .|++|
T Consensus 372 ~~isl~i~~G~~~~ivG~sG---sGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~e 447 (598)
T 3qf4_B 372 KDITFHIKPGQKVALVGPTG---SGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFS-TTVKE 447 (598)
T ss_dssp CSEEEECCTTCEEEEECCTT---SSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCS-SBHHH
T ss_pred cceEEEEcCCCEEEEECCCC---CcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCcccc-ccHHH
Confidence 77777788888888887522 56665432 3345554555554322 34678999999998886 59999
Q ss_pred HHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccc-----------cCcCChHHHHHHHHHHHHhCCCCEEEEECCCCC
Q psy7365 392 HLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDRE-----------VRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSG 460 (601)
Q Consensus 392 ~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~-----------~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsG 460 (601)
|+.+... +... +++.++++..++.+..++. ..+||||||||++|||||+.+|++|||||||++
T Consensus 448 ni~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~ 521 (598)
T 3qf4_B 448 NLKYGNP--GATD----EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSN 521 (598)
T ss_dssp HHHSSST--TCCT----THHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTT
T ss_pred HHhcCCC--CCCH----HHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccC
Confidence 9987421 1121 2345566666665444433 478999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365 461 MDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK 520 (601)
Q Consensus 461 LD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~ 520 (601)
||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||||++|++|++++.|+++++.++
T Consensus 522 LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 579 (598)
T 3qf4_B 522 VDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNTIKN-ADLIIVLRDGEIVEMGKHDELIQK 579 (598)
T ss_dssp CCHHHHHHHHHHHHHHH-TTSEEEEESCCTTHHHH-CSEEEEECSSSEEECSCHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999985 58999999999999976 999999999999999999999764
No 106
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.94 E-value=9e-27 Score=266.44 Aligned_cols=126 Identities=24% Similarity=0.345 Sum_probs=101.5
Q ss_pred CCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCc-ccCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhh
Q psy7365 142 KLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPH-KRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNV 220 (601)
Q Consensus 142 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~ 220 (601)
.+||.||+.|+... . ...+..+.++.+|+.. ..++++.+|||||||||+|||||+
T Consensus 504 ~ltv~e~l~~~~~~-----~-~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~------------------ 559 (670)
T 3ux8_A 504 DMTVEDALDFFASI-----P-KIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELH------------------ 559 (670)
T ss_dssp TSBHHHHHHHTTTC-----H-HHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHH------------------
T ss_pred hCCHHHHHHHHHHh-----h-hHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHh------------------
Confidence 57999999886421 1 2245668899999975 568999999999999998655433
Q ss_pred hHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHH
Q psy7365 221 ILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWE 300 (601)
Q Consensus 221 ~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~ 300 (601)
++| ..|++|||||||+||||.++..+++
T Consensus 560 --------------------~~p--------------------------------~~p~llllDEPt~~LD~~~~~~i~~ 587 (670)
T 3ux8_A 560 --------------------RRS--------------------------------NGRTLYILDEPTTGLHVDDIARLLD 587 (670)
T ss_dssp --------------------SCC--------------------------------CSCEEEEEESTTTTCCHHHHHHHHH
T ss_pred --------------------hCC--------------------------------CCCcEEEEeCCCCCCCHHHHHHHHH
Confidence 333 1268999999999999999999999
Q ss_pred HHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEe------cCCccccccCcc
Q psy7365 301 LLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAII------AAGKLQCCGSSV 349 (601)
Q Consensus 301 ~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL------~~GkIv~~G~~~ 349 (601)
+|+++. .+|+|||++|||++++ ..|||+++| .+|+++..|++.
T Consensus 588 ~l~~l~-----~~g~tvi~vtHd~~~~-~~~d~i~~l~~~~g~~~G~i~~~g~~~ 636 (670)
T 3ux8_A 588 VLHRLV-----DNGDTVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPE 636 (670)
T ss_dssp HHHHHH-----HTTCEEEEECCCHHHH-TTCSEEEEEESSSGGGCCEEEEEECHH
T ss_pred HHHHHH-----HCCCEEEEEeCCHHHH-HhCCEEEEecCCcCCCCCEEEEecCHH
Confidence 999983 3589999999999987 569999999 789998877653
No 107
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.93 E-value=9.8e-27 Score=240.49 Aligned_cols=174 Identities=19% Similarity=0.219 Sum_probs=131.6
Q ss_pred cchhHHHhcCCEEEEecCCccccccCcccccc-------ccccccccccccCCcccccccccCCCCcccCCCCCHHHHHH
Q psy7365 322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN-------SFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLE 394 (601)
Q Consensus 322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk~-------~~g~g~~igld~~~~~~~~~ig~v~Q~~~l~~~lTv~E~L~ 394 (601)
+++++...-++.+++++... +|++++++. ..|..++ ..++||+||++.+|+. ||+||+.
T Consensus 55 ~~isl~i~~Ge~~~i~G~NG---sGKSTLlk~l~Gl~~p~~G~I~~----------~g~i~~v~Q~~~l~~~-tv~enl~ 120 (290)
T 2bbs_A 55 KDINFKIERGQLLAVAGSTG---AGKTSLLMMIMGELEPSEGKIKH----------SGRISFCSQNSWIMPG-TIKENII 120 (290)
T ss_dssp EEEEEEECTTCEEEEEESTT---SSHHHHHHHHTTSSCEEEEEEEC----------CSCEEEECSSCCCCSS-BHHHHHH
T ss_pred EeeEEEEcCCCEEEEECCCC---CcHHHHHHHHhcCCCCCCcEEEE----------CCEEEEEeCCCccCcc-cHHHHhh
Confidence 88888888999999998532 566665542 1122211 1258999999988875 9999997
Q ss_pred HhHHhcCCChhHHHHHHHHHHHHcCCCcc-----------cccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCH
Q psy7365 395 FYSRVRNLPSVLLNTIVNESLNKFALGHY-----------SDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDP 463 (601)
Q Consensus 395 ~~~~~~g~~~~~~~~~~~~lLe~~~L~~~-----------~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~ 463 (601)
.. .... ....++++.+++.+. .++++.+||||||||++||+||+.+|++|||||||+|||+
T Consensus 121 -~~---~~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~ 192 (290)
T 2bbs_A 121 -GV---SYDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 192 (290)
T ss_dssp -TT---CCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCH
T ss_pred -Cc---ccch----HHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCH
Confidence 31 1111 123344455554322 2334689999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365 464 GARRFLWTCI-ERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 519 (601)
Q Consensus 464 ~~~~~i~~lL-~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~ 519 (601)
.++..+++.+ +++. +|+|||++|||++++. .|||+++|++|+++..|+++++..
T Consensus 193 ~~~~~i~~~ll~~~~-~~~tviivtHd~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 193 LTEKEIFESCVCKLM-ANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp HHHHHHHHHCCCCCT-TTSEEEEECCCHHHHH-HSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHHhh-CCCEEEEEecCHHHHH-cCCEEEEEECCeEEEeCCHHHHhh
Confidence 9999999974 4553 5899999999999986 599999999999999999999854
No 108
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.91 E-value=1e-24 Score=252.93 Aligned_cols=108 Identities=24% Similarity=0.364 Sum_probs=90.9
Q ss_pred HHHHHHHHHcCCCc-ccCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCC
Q psy7365 165 LEISNMIGDLGIPH-KRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHP 243 (601)
Q Consensus 165 ~~~~~~l~~~gl~~-~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p 243 (601)
.++.++++.+||.. ..++++.+|||||||||+||++|..+ |
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~--------------------------------------p 749 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRS--------------------------------------G 749 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSC--------------------------------------C
T ss_pred HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhC--------------------------------------C
Confidence 46789999999987 46999999999999999865443222 1
Q ss_pred cchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecc
Q psy7365 244 MNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHY 323 (601)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHd 323 (601)
.+|++|||||||+|||+..+..++++|+++. ..|.|||++|||
T Consensus 750 --------------------------------~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~-----~~G~tVIvisHd 792 (842)
T 2vf7_A 750 --------------------------------RGGTVYVLDEPTTGLHPADVERLQRQLVKLV-----DAGNTVIAVEHK 792 (842)
T ss_dssp --------------------------------SSCEEEEEECTTTTCCHHHHHHHHHHHHHHH-----HTTCEEEEECCC
T ss_pred --------------------------------CCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-----hCCCEEEEEcCC
Confidence 0268999999999999999999999999983 358999999999
Q ss_pred hhHHHhcCCEEEEe------cCCccccccCc
Q psy7365 324 MDEADLLGDRIAII------AAGKLQCCGSS 348 (601)
Q Consensus 324 l~~~~~l~Drv~vL------~~GkIv~~G~~ 348 (601)
++++ ..|||+++| .+|+++..+++
T Consensus 793 l~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~ 822 (842)
T 2vf7_A 793 MQVV-AASDWVLDIGPGAGEDGGRLVAQGTP 822 (842)
T ss_dssp HHHH-TTCSEEEEECSSSGGGCCSEEEEECH
T ss_pred HHHH-HhCCEEEEECCCCCCCCCEEEEEcCH
Confidence 9999 789999999 57888877654
No 109
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.91 E-value=1.2e-24 Score=253.05 Aligned_cols=125 Identities=25% Similarity=0.371 Sum_probs=98.7
Q ss_pred CCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCc-ccCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhh
Q psy7365 142 KLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPH-KRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNV 220 (601)
Q Consensus 142 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~ 220 (601)
.+||.|++.|+.. .+ . ..++.++++.+||.. ..++++.+|||||||||++|++|.
T Consensus 806 ~ltv~e~l~~~~~---~~--~-~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~------------------ 861 (972)
T 2r6f_A 806 DMTVEDALDFFAS---IP--K-IKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELH------------------ 861 (972)
T ss_dssp TSBHHHHHHHTCS---CH--H-HHHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHS------------------
T ss_pred hcCHHHHHHHHhc---ch--h-HHHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHh------------------
Confidence 4678888877532 21 1 234578999999997 789999999999999998654332
Q ss_pred hHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHH
Q psy7365 221 ILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWE 300 (601)
Q Consensus 221 ~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~ 300 (601)
.+| ..|++|||||||+|||+..+..+++
T Consensus 862 --------------------~~p--------------------------------~~p~lLILDEPTsGLD~~~~~~l~~ 889 (972)
T 2r6f_A 862 --------------------RRS--------------------------------NGRTLYILDEPTTGLHVDDIARLLD 889 (972)
T ss_dssp --------------------SCC--------------------------------CSCEEEEEECTTTTCCHHHHHHHHH
T ss_pred --------------------cCC--------------------------------CCCCEEEEECCCCCCCHHHHHHHHH
Confidence 222 1268999999999999999999999
Q ss_pred HHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEe------cCCccccccCc
Q psy7365 301 LLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAII------AAGKLQCCGSS 348 (601)
Q Consensus 301 ~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL------~~GkIv~~G~~ 348 (601)
+|+++. ..|.|||++|||++++ ..|||+++| .+|+++..+++
T Consensus 890 lL~~L~-----~~G~TVIvisHdl~~i-~~aDrIivL~p~gG~~~G~Iv~~g~~ 937 (972)
T 2r6f_A 890 VLHRLV-----DNGDTVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTP 937 (972)
T ss_dssp HHHHHH-----HTTCEEEEECCCHHHH-TTCSEEEEECSSSTTSCCSEEEEESH
T ss_pred HHHHHH-----hCCCEEEEEcCCHHHH-HhCCEEEEEcCCCCCCCCEEEEecCH
Confidence 999983 3589999999999987 589999999 46777766543
No 110
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.91 E-value=4.4e-24 Score=249.54 Aligned_cols=127 Identities=26% Similarity=0.352 Sum_probs=102.6
Q ss_pred CCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCc-ccCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhh
Q psy7365 142 KLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPH-KRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNV 220 (601)
Q Consensus 142 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~ 220 (601)
.+||.|++.|+... ....++.++|+.+||.. ..++++.+|||||||||+|||+|..
T Consensus 766 ~~tv~eal~f~~~~------~~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~----------------- 822 (916)
T 3pih_A 766 DMTVDEALEFFKNI------PSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRK----------------- 822 (916)
T ss_dssp SSBHHHHHHHTTTC------HHHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTS-----------------
T ss_pred hCCHHHHHHHHhcc------hhHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhh-----------------
Confidence 36888888876431 12346778999999985 4689999999999999986554332
Q ss_pred hHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHH
Q psy7365 221 ILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWE 300 (601)
Q Consensus 221 ~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~ 300 (601)
+| .+|++|||||||+|||+..++.+++
T Consensus 823 ---------------------~p--------------------------------~~p~LLILDEPTsGLD~~~~~~L~~ 849 (916)
T 3pih_A 823 ---------------------RD--------------------------------TGRTLYILDEPTVGLHFEDVRKLVE 849 (916)
T ss_dssp ---------------------CC--------------------------------CSSEEEEEESTTTTCCHHHHHHHHH
T ss_pred ---------------------CC--------------------------------CCCCEEEEECCCCCCCHHHHHHHHH
Confidence 22 1368999999999999999999999
Q ss_pred HHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEe------cCCccccccCccc
Q psy7365 301 LLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAII------AAGKLQCCGSSVF 350 (601)
Q Consensus 301 ~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL------~~GkIv~~G~~~l 350 (601)
+|.++. .+|.|||+||||++++. .||+|++| .+|+++..|++..
T Consensus 850 lL~~L~-----~~G~TVIvI~HdL~~i~-~ADrIivLgp~gg~~~G~Iv~~Gtpee 899 (916)
T 3pih_A 850 VLHRLV-----DRGNTVIVIEHNLDVIK-NADHIIDLGPEGGKEGGYIVATGTPEE 899 (916)
T ss_dssp HHHHHH-----HTTCEEEEECCCHHHHT-TCSEEEEEESSSGGGCCEEEEEESHHH
T ss_pred HHHHHH-----hcCCEEEEEeCCHHHHH-hCCEEEEecCCCCCCCCEEEEEcCHHH
Confidence 999983 35899999999999876 59999999 7899998887654
No 111
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.2e-27 Score=261.88 Aligned_cols=187 Identities=13% Similarity=0.103 Sum_probs=146.5
Q ss_pred chhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCee-E-EEEcccc
Q psy7365 47 AYVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSG-T-AKIYDHD 118 (601)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G-~-v~~~g~~ 118 (601)
.++..++||++.|+ ++||++.+ +||||| ||||| .|+|+|+++|++| + |.++|.
T Consensus 116 ~~mi~~~nl~~~y~----------~vsl~i~~Ge~v~IvGpnGs--GKSTL------lr~L~Gl~~p~~G~~pI~vdg~- 176 (460)
T 2npi_A 116 HTMKYIYNLHFMLE----------KIRMSNFEGPRVVIVGGSQT--GKTSL------SRTLCSYALKFNAYQPLYINLD- 176 (460)
T ss_dssp CTHHHHHHHHHHHH----------HHHHHSSSCCCEEEEESTTS--SHHHH------HHHHHHTTHHHHCCCCEEEECC-
T ss_pred cchhhhhhhhehhh----------cCceEeCCCCEEEEECCCCC--CHHHH------HHHHhCcccccCCceeEEEcCC-
Confidence 44567999999985 68888866 999999 56654 5799999999999 9 999982
Q ss_pred CCCchHHhcccEEEEccCCCC---CCCCCHHHHHHHhHhh-cCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhh
Q psy7365 119 IRTDMTTIRRSLGVCPQYNAL---FDKLTVEEHMWFYSQL-KQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRK 194 (601)
Q Consensus 119 ~~~~~~~~~~~ig~v~Q~~~~---~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr 194 (601)
.++.++++||++.+ +..+|+.||+ |+... .+.. ...++.++++.+|+.+..+ +.+||||||||
T Consensus 177 -------~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~---~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qr 243 (460)
T 2npi_A 177 -------PQQPIFTVPGCISATPISDILDAQLPT-WGQSLTSGAT---LLHNKQPMVKNFGLERINE--NKDLYLECISQ 243 (460)
T ss_dssp -------TTSCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCC---SSCCBCCEECCCCSSSGGG--CHHHHHHHHHH
T ss_pred -------ccCCeeeeccchhhcccccccchhhhh-cccccccCcc---hHHHHHHHHHHhCCCcccc--hhhhhHHHHHH
Confidence 26779999999853 4567999998 65442 2211 1234567789999988766 89999999999
Q ss_pred hhchhh--hcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHh
Q psy7365 195 LDNVKV--WFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFA 272 (601)
Q Consensus 195 ~~~~~~--~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 272 (601)
|++|++ |..+
T Consensus 244 lalAra~rL~~~-------------------------------------------------------------------- 255 (460)
T 2npi_A 244 LGQVVGQRLHLD-------------------------------------------------------------------- 255 (460)
T ss_dssp HHHHHHHHHHHC--------------------------------------------------------------------
T ss_pred HHHHHHHHhccC--------------------------------------------------------------------
Confidence 986543 3222
Q ss_pred hccCCCcE----EEEec-CCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchh------HHHhcCCE-----EEE
Q psy7365 273 MSFVPAST----VILDE-PTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMD------EADLLGDR-----IAI 336 (601)
Q Consensus 273 ~~~~~~~~----liLDE-PtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~------~~~~l~Dr-----v~v 336 (601)
|++ +|||| ||++||+. +..+.++++++ |+|+|+++|+.+ ++..+||| +++
T Consensus 256 -----p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--------~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~ 321 (460)
T 2npi_A 256 -----PQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL--------NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFF 321 (460)
T ss_dssp -----HHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--------TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEE
T ss_pred -----cccCcceEEEeCCcccccChh-HHHHHHHHHHh--------CCCEEEEEccCchhhhHHHHHHhcccccCCEEEE
Confidence 478 99999 99999999 66667666542 689999999988 88899999 999
Q ss_pred ec-CCccccccCc
Q psy7365 337 IA-AGKLQCCGSS 348 (601)
Q Consensus 337 L~-~GkIv~~G~~ 348 (601)
|. +|+++ .+++
T Consensus 322 l~k~G~iv-~g~~ 333 (460)
T 2npi_A 322 IPKLDGVS-AVDD 333 (460)
T ss_dssp ECCCTTCC-CCCH
T ss_pred EeCCCcEE-ECCH
Confidence 99 99988 6654
No 112
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.89 E-value=9e-24 Score=246.59 Aligned_cols=124 Identities=23% Similarity=0.324 Sum_probs=98.6
Q ss_pred CCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCc-ccCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhh
Q psy7365 143 LTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPH-KRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVI 221 (601)
Q Consensus 143 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~ 221 (601)
+||.|++.|+.. .+ . ..+..++++.+||.. ..++++.+|||||||||++|++|.
T Consensus 825 ltv~e~l~~~~~---~~--~-~~~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~------------------- 879 (993)
T 2ygr_A 825 MSIEEAAEFFEP---IA--G-VHRYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQ------------------- 879 (993)
T ss_dssp SBHHHHHHHSTT---CH--H-HHHHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHS-------------------
T ss_pred ccHHHHHHHhhc---ch--H-HHHHHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHH-------------------
Confidence 577888876542 21 1 234578999999987 789999999999999998654332
Q ss_pred HhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHH
Q psy7365 222 LRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWEL 301 (601)
Q Consensus 222 ~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~ 301 (601)
.+| .+|++|||||||+|||+..+..++++
T Consensus 880 -------------------~~p--------------------------------~~p~lLILDEPTsGLD~~~~~~l~~l 908 (993)
T 2ygr_A 880 -------------------KRS--------------------------------TGRTVYILDEPTTGLHFDDIRKLLNV 908 (993)
T ss_dssp -------------------SCC--------------------------------CSSEEEEEESTTTTCCHHHHHHHHHH
T ss_pred -------------------hCC--------------------------------CCCCEEEEECCCCCCCHHHHHHHHHH
Confidence 221 12689999999999999999999999
Q ss_pred HHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEe------cCCccccccCc
Q psy7365 302 LIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAII------AAGKLQCCGSS 348 (601)
Q Consensus 302 l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL------~~GkIv~~G~~ 348 (601)
|+++. ..|.|||++|||++++ ..||++++| .+|+++..|++
T Consensus 909 L~~L~-----~~G~TVIvisHdl~~i-~~aDrIivL~p~gg~~~G~Iv~~G~~ 955 (993)
T 2ygr_A 909 INGLV-----DKGNTVIVIEHNLDVI-KTSDWIIDLGPEGGAGGGTVVAQGTP 955 (993)
T ss_dssp HHHHH-----HTTCEEEEECCCHHHH-TTCSEEEEEESSSTTSCSEEEEEECH
T ss_pred HHHHH-----hCCCEEEEEcCCHHHH-HhCCEEEEECCCcCCCCCEEEEecCH
Confidence 99883 3589999999999997 589999999 57888777654
No 113
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.88 E-value=6e-23 Score=220.79 Aligned_cols=59 Identities=20% Similarity=0.307 Sum_probs=52.7
Q ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEe----cCCcccc
Q psy7365 279 STVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAII----AAGKLQC 344 (601)
Q Consensus 279 ~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL----~~GkIv~ 344 (601)
++|||||||+|||+.++..+.+.|+++ . +|.|||+|||+++++ ..||++++| ++|+++.
T Consensus 317 ~~LlLDEpt~~LD~~~~~~l~~~L~~l-----~-~~~~vi~itH~~~~~-~~~d~i~~l~k~~~~G~~~~ 379 (415)
T 4aby_A 317 PSVVFDEVDAGIGGAAAIAVAEQLSRL-----A-DTRQVLVVTHLAQIA-ARAHHHYKVEKQVEDGRTVS 379 (415)
T ss_dssp SEEEESSTTTTCCHHHHHHHHHHHHHH-----T-TTSEEEEECSCHHHH-TTCSEEEEEEEEEETTEEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHH-----h-CCCEEEEEeCcHHHH-hhcCeEEEEEEeccCCceEE
Confidence 899999999999999999999999987 2 489999999999776 579999999 7787644
No 114
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.83 E-value=8.1e-21 Score=202.24 Aligned_cols=62 Identities=19% Similarity=0.192 Sum_probs=55.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCcccc
Q psy7365 277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQC 344 (601)
Q Consensus 277 ~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~ 344 (601)
+|++|||||||+||||..+..++++|+++. ..|.|||++|||+++ ...||++++|.+|+++.
T Consensus 303 ~p~~lllDEpt~~LD~~~~~~~~~~l~~l~-----~~g~tvi~itH~~~~-~~~~d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 303 RLDAFFIDEGFSSLDTENKEKIASVLKELE-----RLNKVIVFITHDREF-SEAFDRKLRITGGVVVN 364 (365)
T ss_dssp TCCEEEEESCCTTSCHHHHHHHHHHHHGGG-----GSSSEEEEEESCHHH-HTTCSCEEEEETTEEC-
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHH-----hCCCEEEEEecchHH-HHhCCEEEEEECCEEEe
Confidence 469999999999999999999999999873 358999999999998 67899999999999864
No 115
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.82 E-value=4.4e-20 Score=172.42 Aligned_cols=83 Identities=36% Similarity=0.488 Sum_probs=76.2
Q ss_pred cccccCcCChHHHHHHHHH------HHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhC
Q psy7365 424 SDREVRTLSGGNKRKLSTA------IALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALC 497 (601)
Q Consensus 424 ~~~~~~~LSgGqkQRl~lA------~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~ 497 (601)
.++++.+||||||||++|| +||+.+|+++||||||+|||+.++..+++.|+++.++|+|||++|||+ ++..+|
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~~~~~ 129 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-ELKDAA 129 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG-GGGGGC
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH-HHHHhC
Confidence 5788999999999999886 899999999999999999999999999999999877799999999999 578899
Q ss_pred CEEEEE--eCCE
Q psy7365 498 TKLTIM--VNGQ 507 (601)
Q Consensus 498 drv~iL--~~G~ 507 (601)
|++++| ++|.
T Consensus 130 d~ii~l~~~~g~ 141 (148)
T 1f2t_B 130 DHVIRISLENGS 141 (148)
T ss_dssp SEEEEEEEETTE
T ss_pred CEEEEEEcCCCe
Confidence 999999 4553
No 116
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.80 E-value=3.3e-22 Score=196.99 Aligned_cols=140 Identities=20% Similarity=0.201 Sum_probs=85.2
Q ss_pred ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHHhcccEEEEccCCCCCCCCCHHHHH-HHhH----
Q psy7365 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHM-WFYS---- 153 (601)
Q Consensus 79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l-~~~~---- 153 (601)
+||||| ||||| .++|+|+ +|++|+|.. .++..+....++.+||+||++ .||+ .|+.
T Consensus 28 iG~nGs--GKSTL------l~~l~Gl-~p~~G~I~~--~~~~~~~~~~~~~ig~v~q~~--------~enl~~~~~~~~~ 88 (208)
T 3b85_A 28 LGPAGS--GKTYL------AMAKAVQ-ALQSKQVSR--IILTRPAVEAGEKLGFLPGTL--------NEKIDPYLRPLHD 88 (208)
T ss_dssp ECCTTS--STTHH------HHHHHHH-HHHTTSCSE--EEEEECSCCTTCCCCSSCC--------------CTTTHHHHH
T ss_pred ECCCCC--CHHHH------HHHHhcC-CCcCCeeee--EEecCCchhhhcceEEecCCH--------HHHHHHHHHHHHH
Confidence 999999 67765 6799999 999999943 222211123467899999987 4444 2211
Q ss_pred hhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcc
Q psy7365 154 QLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRD 233 (601)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~ 233 (601)
...... ...++.++++. |+ |||||+++||||+.+
T Consensus 89 ~~~~~~---~~~~~~~~l~~-gl-------------Gq~qrv~lAraL~~~----------------------------- 122 (208)
T 3b85_A 89 ALRDMV---EPEVIPKLMEA-GI-------------VEVAPLAYMRGRTLN----------------------------- 122 (208)
T ss_dssp HHTTTS---CTTHHHHHHHT-TS-------------EEEEEGGGGTTCCBC-----------------------------
T ss_pred HHHHhc---cHHHHHHHHHh-CC-------------chHHHHHHHHHHhcC-----------------------------
Confidence 111111 12346667776 54 999999876554332
Q ss_pred hhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccC
Q psy7365 234 DYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLS 313 (601)
Q Consensus 234 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~ 313 (601)
|++|||||||+| ++..++++|+++ ..
T Consensus 123 --------------------------------------------p~lllLDEPts~----~~~~l~~~l~~l------~~ 148 (208)
T 3b85_A 123 --------------------------------------------DAFVILDEAQNT----TPAQMKMFLTRL------GF 148 (208)
T ss_dssp --------------------------------------------SEEEEECSGGGC----CHHHHHHHHTTB------CT
T ss_pred --------------------------------------------CCEEEEeCCccc----cHHHHHHHHHHh------cC
Confidence 589999999999 888889988764 24
Q ss_pred CcEEEEEecchhHHHhcCCEEEEecCCcc
Q psy7365 314 GRTVILTTHYMDEADLLGDRIAIIAAGKL 342 (601)
Q Consensus 314 G~TVI~~tHdl~~~~~l~Drv~vL~~GkI 342 (601)
|+||| +|||++++.. .....+|..
T Consensus 149 g~tii-vtHd~~~~~~----~~~~~~G~~ 172 (208)
T 3b85_A 149 GSKMV-VTGDITQVDL----PGGQKSGLR 172 (208)
T ss_dssp TCEEE-EEEC----------------CCH
T ss_pred CCEEE-EECCHHHHhC----cCCCCCcHH
Confidence 88999 9999987654 333456654
No 117
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.80 E-value=3.4e-20 Score=193.79 Aligned_cols=59 Identities=24% Similarity=0.256 Sum_probs=50.5
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEE--EEecCCcc
Q psy7365 277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRI--AIIAAGKL 342 (601)
Q Consensus 277 ~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv--~vL~~GkI 342 (601)
+|+++||||||++||+..+..++++|+++ ..|.|+|++||+. ++...||++ ++|.+|..
T Consensus 241 ~~~~lllDEp~~~LD~~~~~~l~~~l~~~------~~~~~vi~~tH~~-~~~~~~d~~~~v~~~~g~s 301 (322)
T 1e69_A 241 PSPFYVLDEVDSPLDDYNAERFKRLLKEN------SKHTQFIVITHNK-IVMEAADLLHGVTMVNGVS 301 (322)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHHHHHHH------TTTSEEEEECCCT-TGGGGCSEEEEEEESSSCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHh------cCCCeEEEEECCH-HHHhhCceEEEEEEeCCEE
Confidence 46899999999999999999999999986 2478999999996 467789987 77777764
No 118
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.79 E-value=1.2e-19 Score=193.13 Aligned_cols=85 Identities=20% Similarity=0.350 Sum_probs=80.3
Q ss_pred ccccCcCChHHHHHHHHHHHHh------CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCC
Q psy7365 425 DREVRTLSGGNKRKLSTAIALL------GNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCT 498 (601)
Q Consensus 425 ~~~~~~LSgGqkQRl~lA~AL~------~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~d 498 (601)
++++.+|||||||||+||+||+ ++|++|||||||+||||.++..++++|+++.++|.|||++|||+++ ...||
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d 352 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFD 352 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCS
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCC
Confidence 6789999999999999999999 8999999999999999999999999999998889999999999998 66799
Q ss_pred EEEEEeCCEEEE
Q psy7365 499 KLTIMVNGQFTC 510 (601)
Q Consensus 499 rv~iL~~G~iv~ 510 (601)
|+++|++|++++
T Consensus 353 ~~~~l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLRITGGVVVN 364 (365)
T ss_dssp CEEEEETTEEC-
T ss_pred EEEEEECCEEEe
Confidence 999999999875
No 119
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.79 E-value=1.2e-23 Score=205.87 Aligned_cols=177 Identities=10% Similarity=-0.001 Sum_probs=112.2
Q ss_pred cCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHHhcccEEEEc
Q psy7365 61 KLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCP 134 (601)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~ 134 (601)
..++.+|++.| .++.+ +||||| ||||| .++|+|+++...+.+.+.+.+. ....++++||+|
T Consensus 4 ~~~~~~~~~~~--~~i~~Gei~~l~GpnGs--GKSTL------l~~l~gl~~~i~~~~~~~~~~~---~~~~~~~i~~~~ 70 (207)
T 1znw_A 4 EGPDTKPTARG--QPAAVGRVVVLSGPSAV--GKSTV------VRCLRERIPNLHFSVSATTRAP---RPGEVDGVDYHF 70 (207)
T ss_dssp -----------------CCCEEEEECSTTS--SHHHH------HHHHHHHSTTCEECCCEESSCC---CTTCCBTTTBEE
T ss_pred CCCCCCcCCCC--CCCCCCCEEEEECCCCC--CHHHH------HHHHHhhCCceEEcccccccCC---cccccCCCeeEe
Confidence 44556778888 44444 999999 56654 5799999974444333322221 112356799999
Q ss_pred cCCCCCCCCCHHHHHHHhH------hhcCCChHHHHHHHHHH------HHHcCCCcccCCccccCChHHHhhhhchhhhc
Q psy7365 135 QYNALFDKLTVEEHMWFYS------QLKQVPKDLAQLEISNM------IGDLGIPHKRTSLANTLSGGMQRKLDNVKVWF 202 (601)
Q Consensus 135 Q~~~~~~~~tv~e~l~~~~------~~~~~~~~~~~~~~~~~------l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~ 202 (601)
|++.+|+.+++.+++.++. ..++.++.+.++++.+. ++.+|+...+++++.+|| +
T Consensus 71 q~~~~~~~~~~~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS-------~------ 137 (207)
T 1znw_A 71 IDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT-------V------ 137 (207)
T ss_dssp CCHHHHHHHHHTTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE-------E------
T ss_pred cCHHHHHHHHhcCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE-------E------
Confidence 9998888888888774321 33466666666666555 444444444444444444 1
Q ss_pred chhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEE
Q psy7365 203 NNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVI 282 (601)
Q Consensus 203 ~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~li 282 (601)
++. +|++++
T Consensus 138 ------------------------------------l~~-----------------------------------~p~~~~ 146 (207)
T 1znw_A 138 ------------------------------------FLA-----------------------------------PPSWQD 146 (207)
T ss_dssp ------------------------------------EEE-----------------------------------CSCHHH
T ss_pred ------------------------------------EEE-----------------------------------CCCHHH
Confidence 222 257899
Q ss_pred EecCCCCC----CHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEec
Q psy7365 283 LDEPTSGV----DPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIA 338 (601)
Q Consensus 283 LDEPtsgL----D~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~ 338 (601)
|||||+++ |+..++.+++++++++. ..|.|+|++|||++++..+|||+++|.
T Consensus 147 LDep~~~l~~~~d~~~~~~l~~~l~~l~~----~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 147 LQARLIGRGTETADVIQRRLDTARIELAA----QGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHHHG----GGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhh----hccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 99999998 78899999999998842 358999999999999999999999985
No 120
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.77 E-value=4e-21 Score=210.34 Aligned_cols=176 Identities=13% Similarity=0.144 Sum_probs=132.8
Q ss_pred chhHHHhcCCEEEEecCCccccccCcccccc-------ccc-c-ccccccccCCcccccccccCCCCcc---cCCCCCHH
Q psy7365 323 YMDEADLLGDRIAIIAAGKLQCCGSSVFLKN-------SFA-R-GYYLSLDMKSAPQKSYIGYCPQFDA---LNDRLTPR 390 (601)
Q Consensus 323 dl~~~~~l~Drv~vL~~GkIv~~G~~~lLk~-------~~g-~-g~~igld~~~~~~~~~ig~v~Q~~~---l~~~lTv~ 390 (601)
++++....++++++++... +|++++++. ..+ + .++ +. ..++.++|+||+.. +++.+|++
T Consensus 130 ~vsl~i~~Ge~v~IvGpnG---sGKSTLlr~L~Gl~~p~~G~~pI~v---dg---~~~~~i~~vpq~~~l~~~~~~~tv~ 200 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQ---TGKTSLSRTLCSYALKFNAYQPLYI---NL---DPQQPIFTVPGCISATPISDILDAQ 200 (460)
T ss_dssp HHHHHSSSCCCEEEEESTT---SSHHHHHHHHHHTTHHHHCCCCEEE---EC---CTTSCSSSCSSCCEEEECCSCCCTT
T ss_pred cCceEeCCCCEEEEECCCC---CCHHHHHHHHhCcccccCCceeEEE---cC---CccCCeeeeccchhhcccccccchh
Confidence 4666667889999997522 566655442 122 2 222 21 23677999999985 34567999
Q ss_pred HHHHHhHHh-cCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHH--HhCCCCE----EEEEC-CCCCCC
Q psy7365 391 EHLEFYSRV-RNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIA--LLGNTPL----IFLDE-PTSGMD 462 (601)
Q Consensus 391 E~L~~~~~~-~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~A--L~~~P~l----LlLDE-PTsGLD 462 (601)
||+ |.... .+.. ..+++.++++.+|+.+..+ +.+|||||||||++|+| |+.+|++ ||||| ||+|||
T Consensus 201 eni-~~~~~~~~~~---~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD 274 (460)
T 2npi_A 201 LPT-WGQSLTSGAT---LLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLD 274 (460)
T ss_dssp CTT-CSCBCBSSCC---SSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSC
T ss_pred hhh-cccccccCcc---hHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccC
Confidence 988 54332 1211 1234566788999987765 88999999999999999 9999999 99999 999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEccChh------HHHhhCCE-----EEEEe-CCEEEEecCHHHHH
Q psy7365 463 PGARRFLWTCIERAVSEGRCVILTSHNME------ECEALCTK-----LTIMV-NGQFTCLGSATHLK 518 (601)
Q Consensus 463 ~~~~~~i~~lL~~l~~~G~tVllsTHdl~------e~~~l~dr-----v~iL~-~G~iv~~G~~~~L~ 518 (601)
+. ++.+.++++++ |.|++++||+.+ ++..+||| |++|+ +|+++ .|+++++.
T Consensus 275 ~~-~~~l~~l~~~~---~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 275 EN-LAELHHIIEKL---NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp SS-CHHHHHHHHHT---TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred hh-HHHHHHHHHHh---CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 99 66666666553 789999999988 88999999 99999 99999 99988774
No 121
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.76 E-value=1.8e-20 Score=194.75 Aligned_cols=185 Identities=17% Similarity=0.107 Sum_probs=135.4
Q ss_pred hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCch-
Q psy7365 51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDM- 123 (601)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~- 123 (601)
..+.|.+.++... +++++||++.+ +||||| |||| ++ ++|+|+++|++|+|.+.|.++....
T Consensus 76 ~~~~l~~~l~~~~----~~~~l~~~~~~g~vi~lvG~nGs--GKTT-----ll-~~Lag~l~~~~g~V~l~g~d~~r~~a 143 (302)
T 3b9q_A 76 LKESVLEMLAKKN----SKTELQLGFRKPAVIMIVGVNGG--GKTT-----SL-GKLAHRLKNEGTKVLMAAGDTFRAAA 143 (302)
T ss_dssp HHHHHHHHHCC------CCCSCCCCSSSCEEEEEECCTTS--CHHH-----HH-HHHHHHHHHTTCCEEEECCCCSCHHH
T ss_pred HHHHHHHHhCCcc----cccccccccCCCcEEEEEcCCCC--CHHH-----HH-HHHHHHHHHcCCeEEEEeecccchhH
Confidence 4566777765432 35678887755 999999 4554 44 6899999999999999999886431
Q ss_pred ----HH--hcccEEEEccCCC-CCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhh
Q psy7365 124 ----TT--IRRSLGVCPQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLD 196 (601)
Q Consensus 124 ----~~--~~~~ig~v~Q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~ 196 (601)
.. .+..++|+||++. +++.++++||+.++.. .+.+ ..+++.+|+.+..++++.+|| |||++
T Consensus 144 ~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~~~~-~~~d--------~~lldt~gl~~~~~~~~~eLS---kqr~~ 211 (302)
T 3b9q_A 144 SDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKE-EGYD--------VVLCDTSGRLHTNYSLMEELI---ACKKA 211 (302)
T ss_dssp HHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHHHHH-TTCS--------EEEECCCCCSSCCHHHHHHHH---HHHHH
T ss_pred HHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHHHHH-cCCc--------chHHhcCCCCcchhHHHHHHH---HHHHH
Confidence 11 2457999999998 9999999999987643 2221 135788999888889999999 89987
Q ss_pred chhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccC
Q psy7365 197 NVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFV 276 (601)
Q Consensus 197 ~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 276 (601)
+||++. ++
T Consensus 212 iaral~--------------------------------------~~---------------------------------- 219 (302)
T 3b9q_A 212 VGKIVS--------------------------------------GA---------------------------------- 219 (302)
T ss_dssp HHTTST--------------------------------------TC----------------------------------
T ss_pred HHHhhc--------------------------------------cC----------------------------------
Confidence 544322 22
Q ss_pred CCc--EEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEec---------chhHHHhcCCEEEEecCCccc
Q psy7365 277 PAS--TVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTH---------YMDEADLLGDRIAIIAAGKLQ 343 (601)
Q Consensus 277 ~~~--~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tH---------dl~~~~~l~Drv~vL~~GkIv 343 (601)
|+ +|+|| ||+|||+..+. +++. +..|.|+|++|| .++.+...+..|.+++.|+..
T Consensus 220 -P~e~lLvLD-ptsglD~~~~~------~~~~----~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 220 -PNEILLVLD-GNTGLNMLPQA------REFN----EVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp -CSEEEEEEE-GGGGGGGHHHH------HHHH----HHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred -CCeeEEEEe-CCCCcCHHHHH------HHHH----HhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 57 99999 99999998652 2221 124899999999 677788888999999998754
No 122
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.75 E-value=2.5e-20 Score=179.10 Aligned_cols=141 Identities=12% Similarity=0.070 Sum_probs=92.9
Q ss_pred cccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCch-HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhc
Q psy7365 78 PLGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDM-TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK 156 (601)
Q Consensus 78 ~~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~-~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~ 156 (601)
-+||||| ||||| .++|+|+++ |.++|.+..... ...++.+||++|++. +.+++ + .. .
T Consensus 5 l~G~nGs--GKTTL------l~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~~------~~~~~-~-~~-~ 62 (178)
T 1ye8_A 5 ITGEPGV--GKTTL------VKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITTE------GKKKI-F-SS-K 62 (178)
T ss_dssp EECCTTS--SHHHH------HHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEETT------CCEEE-E-EE-T
T ss_pred EECCCCC--CHHHH------HHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecCc------HHHHH-H-Hh-h
Confidence 3899999 56654 579999985 455665432111 134568999999862 22222 1 00 0
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhh-hcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchh
Q psy7365 157 QVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKV-WFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDY 235 (601)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~-~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~ 235 (601)
+.+ -....++++.+||||||||+++|++ +.+
T Consensus 63 ~~~----------------~~~~~~~~~~~lSgG~~qr~~la~aa~~~-------------------------------- 94 (178)
T 1ye8_A 63 FFT----------------SKKLVGSYGVNVQYFEELAIPILERAYRE-------------------------------- 94 (178)
T ss_dssp TCC----------------CSSEETTEEECHHHHHHHHHHHHHHHHHH--------------------------------
T ss_pred cCC----------------ccccccccccCcCHHHHHHHHHHhhcccc--------------------------------
Confidence 110 0135788899999999999975431 000
Q ss_pred hHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEec--CCCCCCHHHHHHHHHHHHHHhhhccccC
Q psy7365 236 AIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDE--PTSGVDPYSRRSIWELLIKVYYASHSLS 313 (601)
Q Consensus 236 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDE--PtsgLD~~~~~~l~~~l~~l~~~~~~~~ 313 (601)
+++. .|+++|||| ||++||+..++.+++.+.+ .
T Consensus 95 --~l~~-----------------------------------~p~llilDEigp~~~ld~~~~~~l~~~l~~--------~ 129 (178)
T 1ye8_A 95 --AKKD-----------------------------------RRKVIIIDEIGKMELFSKKFRDLVRQIMHD--------P 129 (178)
T ss_dssp --HHHC-----------------------------------TTCEEEECCCSTTGGGCHHHHHHHHHHHTC--------T
T ss_pred --cccc-----------------------------------CCCEEEEeCCCCcccCCHHHHHHHHHHHhc--------C
Confidence 0112 358999999 9999999999999988853 3
Q ss_pred CcEEEEEe---cchhHHHhcCCE
Q psy7365 314 GRTVILTT---HYMDEADLLGDR 333 (601)
Q Consensus 314 G~TVI~~t---Hdl~~~~~l~Dr 333 (601)
+.|+|+++ |+++++..+|+|
T Consensus 130 ~~~~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 130 NVNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp TSEEEEECCSSCCSHHHHHHHTC
T ss_pred CCeEEEEEccCCCchHHHHHHhc
Confidence 67788888 599999999998
No 123
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.74 E-value=2e-20 Score=191.34 Aligned_cols=110 Identities=17% Similarity=0.178 Sum_probs=66.3
Q ss_pred eEEeecccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHHhcccEEEEccCCCCCCCCCHHHHHHHh
Q psy7365 73 SLEEQPLGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFY 152 (601)
Q Consensus 73 ~~~~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~ 152 (601)
+|.+.-+||||| ||||| .++|+|+.+|++|+|.++|.++.. ...++.+|++||++.+++.+||.||+.|+
T Consensus 2 ~f~v~lvG~nGa--GKSTL------ln~L~g~~~~~~G~i~~~g~~i~~--~~~~~~i~~v~q~~~~~~~ltv~d~~~~g 71 (270)
T 3sop_A 2 DFNIMVVGQSGL--GKSTL------VNTLFKSQVSRKASSWNREEKIPK--TVEIKAIGHVIEEGGVKMKLTVIDTPGFG 71 (270)
T ss_dssp EEEEEEEESSSS--SHHHH------HHHHHHHHC------------CCC--CCSCCEEEESCC----CCEEEEECCCC--
T ss_pred eeEEEEECCCCC--CHHHH------HHHHhCCCCCCCCccccCCcccCc--ceeeeeeEEEeecCCCcCCceEEechhhh
Confidence 566777999999 56655 679999999999999999998733 23356899999999999999999999887
Q ss_pred HhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchh
Q psy7365 153 SQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVK 199 (601)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~ 199 (601)
....+.. ..+.+.+.++ ....++.+.+||||||||+++||
T Consensus 72 ~~~~~~~---~~~~i~~~~~----~~~~~~~~~~LS~G~~qrv~iaR 111 (270)
T 3sop_A 72 DQINNEN---CWEPIEKYIN----EQYEKFLKEEVNIARKKRIPDTR 111 (270)
T ss_dssp CCSBCTT---CSHHHHHHHH----HHHHHHHHHHSCTTCCSSCCCCS
T ss_pred hhcccHH---HHHHHHHHHH----HHHHhhhHHhcCcccchhhhhhe
Confidence 6543311 1122333333 44567788999999999998654
No 124
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.74 E-value=1.5e-21 Score=210.56 Aligned_cols=186 Identities=11% Similarity=0.038 Sum_probs=131.3
Q ss_pred ccceeecceEEe--------------------------ecccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEcccc
Q psy7365 65 DSYGISDTSLEE--------------------------QPLGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHD 118 (601)
Q Consensus 65 ~~~~~~~~~~~~--------------------------~~~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~ 118 (601)
+..+++|+||++ .-+||||+ ||||| .|+|+|+++|++|+|.++|.+
T Consensus 35 ~~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGa--GKSTL------ln~L~Gl~~p~~GsI~~~g~~ 106 (413)
T 1tq4_A 35 SQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGS--GKSSF------INTLRGIGNEEEGAAKTGVVE 106 (413)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTS--SHHHH------HHHHHTCCTTSTTSCCCCC--
T ss_pred CHHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCC--cHHHH------HHHHhCCCCccCceEEECCee
Confidence 456899999965 23899999 56654 579999999999999999876
Q ss_pred CCCchHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChH--HHhhhh
Q psy7365 119 IRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGG--MQRKLD 196 (601)
Q Consensus 119 ~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG--~~qr~~ 196 (601)
++ + .+++||++ .++.+|+.|++.++. + +.++.++++.+++.+.. ..+. |||| |+||+.
T Consensus 107 ~t------~--~~~v~q~~-~~~~ltv~D~~g~~~-----~----~~~~~~~L~~~~L~~~~-~~~~-lS~G~~~kqrv~ 166 (413)
T 1tq4_A 107 VT------M--ERHPYKHP-NIPNVVFWDLPGIGS-----T----NFPPDTYLEKMKFYEYD-FFII-ISATRFKKNDID 166 (413)
T ss_dssp --------C--CCEEEECS-SCTTEEEEECCCGGG-----S----SCCHHHHHHHTTGGGCS-EEEE-EESSCCCHHHHH
T ss_pred cc------e--eEEecccc-ccCCeeehHhhcccc-----h----HHHHHHHHHHcCCCccC-CeEE-eCCCCccHHHHH
Confidence 52 2 27899985 577889988875432 1 23467889999988653 3444 9999 999998
Q ss_pred chhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccC
Q psy7365 197 NVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFV 276 (601)
Q Consensus 197 ~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 276 (601)
+|+++.+. ..| +.+...
T Consensus 167 la~aL~~~------------------------------------~~p---------------------------~~lV~t 183 (413)
T 1tq4_A 167 IAKAISMM------------------------------------KKE---------------------------FYFVRT 183 (413)
T ss_dssp HHHHHHHT------------------------------------TCE---------------------------EEEEEC
T ss_pred HHHHHHhc------------------------------------CCC---------------------------eEEEEe
Confidence 66543321 011 011223
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhc--c--ccCCcEEEEEecchhH--HHhcCCEEE-EecCCc
Q psy7365 277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYAS--H--SLSGRTVILTTHYMDE--ADLLGDRIA-IIAAGK 341 (601)
Q Consensus 277 ~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~--~--~~~G~TVI~~tHdl~~--~~~l~Drv~-vL~~Gk 341 (601)
.|++++|||||+|||+..+..+++.++++.... . .....++++++|+++. +..+||++. .+..|+
T Consensus 184 kpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 184 KVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp CHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred cCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 468999999999999999999999998874210 0 0123678899999998 888898874 444444
No 125
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.71 E-value=3.8e-17 Score=175.48 Aligned_cols=83 Identities=18% Similarity=0.249 Sum_probs=75.7
Q ss_pred ccCc-CChHHHHHHHHHHHHhCCC--CEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEE
Q psy7365 427 EVRT-LSGGNKRKLSTAIALLGNT--PLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIM 503 (601)
Q Consensus 427 ~~~~-LSgGqkQRl~lA~AL~~~P--~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL 503 (601)
++.. ||||||||++||++|+.+| ++|||||||+|||+.++..+.+.|+++. +|+|||++||+++++ .+|||+++|
T Consensus 291 ~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~~~-~~~d~i~~l 368 (415)
T 4aby_A 291 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQIA-ARAHHHYKV 368 (415)
T ss_dssp BGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHHH-TTCSEEEEE
T ss_pred chhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHH-hhcCeEEEE
Confidence 3444 5999999999999999999 9999999999999999999999999997 689999999999776 579999999
Q ss_pred ----eCCEEEEe
Q psy7365 504 ----VNGQFTCL 511 (601)
Q Consensus 504 ----~~G~iv~~ 511 (601)
++|+++..
T Consensus 369 ~k~~~~G~~~~~ 380 (415)
T 4aby_A 369 EKQVEDGRTVSH 380 (415)
T ss_dssp EEEEETTEEEEE
T ss_pred EEeccCCceEEE
Confidence 89988754
No 126
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.70 E-value=3.8e-19 Score=169.01 Aligned_cols=47 Identities=9% Similarity=0.104 Sum_probs=40.5
Q ss_pred CcEEEEecCCCCCCHH----------------HHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHh
Q psy7365 278 ASTVILDEPTSGVDPY----------------SRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADL 329 (601)
Q Consensus 278 ~~~liLDEPtsgLD~~----------------~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~ 329 (601)
|++++|||||++||+. .+..+++.|+++. .+|.|+|++|||++++..
T Consensus 102 p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~-----~~g~tvi~vtH~~~~~~~ 164 (171)
T 4gp7_A 102 PVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQ-----REGFRYVYILNSPEEVEE 164 (171)
T ss_dssp EEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHH-----HHTCSEEEEECSHHHHHH
T ss_pred EEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHH-----hcCCcEEEEeCCHHHhhh
Confidence 5899999999999999 6688888887763 249999999999999875
No 127
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.70 E-value=6.8e-19 Score=186.76 Aligned_cols=184 Identities=16% Similarity=0.105 Sum_probs=133.6
Q ss_pred hcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCch--
Q psy7365 52 FESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDM-- 123 (601)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~-- 123 (601)
.+.|.+.++... .++.+||++.+ +||||| |||| ++ ++|+|+++|++|+|.+.|.++....
T Consensus 134 ~~~l~~~l~~~~----~~~~l~l~~~~g~vi~lvG~nGs--GKTT-----ll-~~Lag~l~~~~G~V~l~g~D~~r~~a~ 201 (359)
T 2og2_A 134 KESVLEMLAKKN----SKTELQLGFRKPAVIMIVGVNGG--GKTT-----SL-GKLAHRLKNEGTKVLMAAGDTFRAAAS 201 (359)
T ss_dssp HHHHHHHHCCC-------CSCCCCSSSSEEEEEECCTTS--CHHH-----HH-HHHHHHHHHTTCCEEEECCCCSCHHHH
T ss_pred HHHHHHHhCCcc----cCCCcceecCCCeEEEEEcCCCC--hHHH-----HH-HHHHhhccccCCEEEEecccccccchh
Confidence 445555553321 13467777654 999999 4554 44 6899999999999999999986431
Q ss_pred ---H--HhcccEEEEccCCC-CCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhc
Q psy7365 124 ---T--TIRRSLGVCPQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDN 197 (601)
Q Consensus 124 ---~--~~~~~ig~v~Q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~ 197 (601)
. ..+..++|+||++. +++..++.|++.++.. .+.+ ..+++.+|+.+..++++.+|| |||+++
T Consensus 202 eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~~~~-~~~d--------~~lldt~Gl~~~~~~~~~eLS---kqr~~i 269 (359)
T 2og2_A 202 DQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKE-EGYD--------VVLCDTSGRLHTNYSLMEELI---ACKKAV 269 (359)
T ss_dssp HHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHHHHH-TTCS--------EEEEECCCCSSCCHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHhcCeEEEEecccccChhhhHHHHHHHHHh-CCCH--------HHHHHhcCCChhhhhHHHHHH---HHHHHH
Confidence 1 12457999999998 9999999999987643 1221 135778999888889999999 899865
Q ss_pred hhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCC
Q psy7365 198 VKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVP 277 (601)
Q Consensus 198 ~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 277 (601)
||++ .++
T Consensus 270 aral--------------------------------------~~~----------------------------------- 276 (359)
T 2og2_A 270 GKIV--------------------------------------SGA----------------------------------- 276 (359)
T ss_dssp HHHS--------------------------------------TTC-----------------------------------
T ss_pred HHHH--------------------------------------hcC-----------------------------------
Confidence 4332 222
Q ss_pred Cc--EEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEec---------chhHHHhcCCEEEEecCCccc
Q psy7365 278 AS--TVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTH---------YMDEADLLGDRIAIIAAGKLQ 343 (601)
Q Consensus 278 ~~--~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tH---------dl~~~~~l~Drv~vL~~GkIv 343 (601)
|+ +|+|| ||+|||+..+. +++. +..|.|+|++|| .++.+...+..|.+++.|+..
T Consensus 277 P~e~lLvLD-pttglD~~~~~------~~~~----~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~ 342 (359)
T 2og2_A 277 PNEILLVLD-GNTGLNMLPQA------REFN----EVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 342 (359)
T ss_dssp CSEEEEEEE-GGGGGGGHHHH------HHHH----HHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred CCceEEEEc-CCCCCCHHHHH------HHHH----HhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCCh
Confidence 57 99999 99999998653 2221 124899999999 567777888999999988754
No 128
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.66 E-value=2.3e-16 Score=147.15 Aligned_cols=56 Identities=30% Similarity=0.343 Sum_probs=49.9
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEec
Q psy7365 277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIA 338 (601)
Q Consensus 277 ~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~ 338 (601)
+|+++||||||+|||+.++..+++.|.++. ..|+|||++||++ +....||++++|+
T Consensus 81 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-----~~~~tiiivsH~~-~~~~~~d~ii~l~ 136 (148)
T 1f2t_B 81 EISLLILDEPTPYLDEERRRKLITIMERYL-----KKIPQVILVSHDE-ELKDAADHVIRIS 136 (148)
T ss_dssp SCSEEEEESCSCTTCHHHHHHHHHHHHHTG-----GGSSEEEEEESCG-GGGGGCSEEEEEE
T ss_pred CCCEEEEECCCccCCHHHHHHHHHHHHHHH-----ccCCEEEEEEChH-HHHHhCCEEEEEE
Confidence 368999999999999999999999999873 3489999999999 5678999999994
No 129
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.66 E-value=1e-19 Score=198.12 Aligned_cols=189 Identities=12% Similarity=0.043 Sum_probs=140.1
Q ss_pred hhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccc---c
Q psy7365 48 YVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDH---D 118 (601)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~---~ 118 (601)
+...++++++.|++ +..+|+++ |++.+ +||||| ||||| .++|+|+.+|++|.|.++|. +
T Consensus 130 ~~l~~~~v~~~~~t---g~~vld~v-l~i~~Gq~~~IvG~sGs--GKSTL------l~~Iag~~~~~~G~i~~~G~r~~e 197 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT---GVRAINAL-LTVGRGQRMGLFAGSGV--GKSVL------LGMMARYTRADVIVVGLIGERGRE 197 (438)
T ss_dssp CTTTSCCCCSBCCC---SCHHHHHH-SCCBTTCEEEEEECTTS--SHHHH------HHHHHHHSCCSEEEEEEESCCHHH
T ss_pred CceEEeccceecCC---CceEEeee-EEecCCCEEEEECCCCC--CHHHH------HHHHhcccCCCeEEEEEeceecHH
Confidence 45669999999853 35699999 99988 999999 56654 67999999999999999998 4
Q ss_pred CCCc------hHHhcccEEEEccC-CCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHH
Q psy7365 119 IRTD------MTTIRRSLGVCPQY-NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGM 191 (601)
Q Consensus 119 ~~~~------~~~~~~~ig~v~Q~-~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~ 191 (601)
+... ....++.++|+||+ ..++++++|.+|+.+.++.++... .++ .... ..+..||+||
T Consensus 198 v~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~----~~v---------~~~l-d~l~~lS~g~ 263 (438)
T 2dpy_A 198 VKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRG----QHV---------LLIM-DSLTRYAMAQ 263 (438)
T ss_dssp HHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTT----CEE---------EEEE-ECHHHHHHHH
T ss_pred HHHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCC----CCH---------HHHH-HhHHHHHHHH
Confidence 4321 23467789999996 457889999999998776543100 011 1111 2377899999
Q ss_pred HhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHH
Q psy7365 192 QRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLF 271 (601)
Q Consensus 192 ~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 271 (601)
||+++| +.+
T Consensus 264 -qrvslA-----------------------------------------l~~----------------------------- 272 (438)
T 2dpy_A 264 -REIALA-----------------------------------------IGE----------------------------- 272 (438)
T ss_dssp -HHHHHH-----------------------------------------TTC-----------------------------
T ss_pred -HHHHHH-----------------------------------------hCC-----------------------------
Confidence 897631 122
Q ss_pred hhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCc-----EEEEEecchhHHHhcCCEEEEecCCcccccc
Q psy7365 272 AMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGR-----TVILTTHYMDEADLLGDRIAIIAAGKLQCCG 346 (601)
Q Consensus 272 ~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~-----TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G 346 (601)
|++ |+||||..+..+.+++.+++... ...|. ||+++|||++ ..+||++++|.+|+++.++
T Consensus 273 ------p~~------t~glD~~~~~~l~~ll~r~~~~~-~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~dG~Ivl~~ 337 (438)
T 2dpy_A 273 ------PPA------TKGYPPSVFAKLPALVERAGNGI-HGGGSITAFYTVLTEGDDQQ--DPIADSARAILDGHIVLSR 337 (438)
T ss_dssp ------CCC------SSSCCTTHHHHHHHHHTTCSCCS-TTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSSEEEEECH
T ss_pred ------Ccc------cccCCHHHHHHHHHHHHHHHhcc-CCCCcccceeEEEEeCCCcc--chhhceEEEEeCcEEEEeC
Confidence 344 99999999999999998873100 01364 9999999999 7789999999999998776
Q ss_pred Cc
Q psy7365 347 SS 348 (601)
Q Consensus 347 ~~ 348 (601)
+.
T Consensus 338 ~~ 339 (438)
T 2dpy_A 338 RL 339 (438)
T ss_dssp HH
T ss_pred CH
Confidence 43
No 130
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.65 E-value=1.2e-16 Score=168.15 Aligned_cols=83 Identities=33% Similarity=0.432 Sum_probs=75.2
Q ss_pred CcccccccCcCChHHHH------HHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHH
Q psy7365 421 GHYSDREVRTLSGGNKR------KLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECE 494 (601)
Q Consensus 421 ~~~~~~~~~~LSgGqkQ------Rl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~ 494 (601)
.+..++++.+||||||| |+++|++++.+|++|||||||+||||..+..++++|+++.++|.|||++|||. ++.
T Consensus 239 ~~~~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~-~~~ 317 (339)
T 3qkt_A 239 WEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-ELK 317 (339)
T ss_dssp ETTEEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG-GGG
T ss_pred cccCcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH-HHH
Confidence 44567899999999999 67888889999999999999999999999999999999877789999999995 567
Q ss_pred hhCCEEEEEe
Q psy7365 495 ALCTKLTIMV 504 (601)
Q Consensus 495 ~l~drv~iL~ 504 (601)
.+|||+++|+
T Consensus 318 ~~~d~~~~l~ 327 (339)
T 3qkt_A 318 DAADHVIRIS 327 (339)
T ss_dssp GGCSEEEEEE
T ss_pred HhCCEEEEEE
Confidence 8999999985
No 131
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.64 E-value=2.1e-20 Score=184.77 Aligned_cols=177 Identities=14% Similarity=0.073 Sum_probs=107.1
Q ss_pred ceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc--hHHhcccEEEEccCCC
Q psy7365 67 YGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD--MTTIRRSLGVCPQYNA 138 (601)
Q Consensus 67 ~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~--~~~~~~~ig~v~Q~~~ 138 (601)
..|+|+||++.+ +||||| ||||| .++|+|++ | |+|.+ |.++.+. ....+++++|+||++.
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGs--GKSTL------l~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~ 78 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGV--GKGTL------IKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKT 78 (218)
T ss_dssp -----------CCCCEEEECSTTS--SHHHH------HHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHH
T ss_pred ccccCCceecCCCCEEEEECCCCC--CHHHH------HHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHH
Confidence 368999999977 999999 56654 57999999 5 99999 8776432 1223568999999987
Q ss_pred CCCCCCH-HHHHH---HhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhc-----hhhhcchhhHHH
Q psy7365 139 LFDKLTV-EEHMW---FYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDN-----VKVWFNNKAWIA 209 (601)
Q Consensus 139 ~~~~~tv-~e~l~---~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~-----~~~~~~~~~~~a 209 (601)
+|+.++. .+++. |....+|.+. ..++++++...+. .. ..+|||||+||+++ ++++
T Consensus 79 ~~~~~~~~~~~l~~~~~~~~~~g~~~----~~i~~~l~~~~~~-il---~~~lsggq~qR~~i~~~~~~~~l-------- 142 (218)
T 1z6g_A 79 IFEDKLKNEDFLEYDNYANNFYGTLK----SEYDKAKEQNKIC-LF---EMNINGVKQLKKSTHIKNALYIF-------- 142 (218)
T ss_dssp HHHHHHHTTCEEEEEEETTEEEEEEH----HHHHHHHHTTCEE-EE---EECHHHHHHHTTCSSCCSCEEEE--------
T ss_pred HHHHhhhccchhhhhhcccccCCCcH----HHHHHHHhCCCcE-EE---EecHHHHHHHHHHhcCCCcEEEE--------
Confidence 7765431 11221 1122344443 2356666664432 11 26899999999875 2221
Q ss_pred HHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCC
Q psy7365 210 AVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSG 289 (601)
Q Consensus 210 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsg 289 (601)
+. +|++++|||||++
T Consensus 143 ------------------------------l~-----------------------------------~~~~~~Lde~~~~ 157 (218)
T 1z6g_A 143 ------------------------------IK-----------------------------------PPSTDVLLSRLLT 157 (218)
T ss_dssp ------------------------------EE-----------------------------------CSCHHHHHHHHHH
T ss_pred ------------------------------Ee-----------------------------------CcCHHHHHHHHHh
Confidence 11 3578899999999
Q ss_pred CCHHHHHHHHHHHHHHhhhcc-c-cCCcEEEEEecchhHHHhcCCEEEE
Q psy7365 290 VDPYSRRSIWELLIKVYYASH-S-LSGRTVILTTHYMDEADLLGDRIAI 336 (601)
Q Consensus 290 LD~~~~~~l~~~l~~l~~~~~-~-~~G~TVI~~tHdl~~~~~l~Drv~v 336 (601)
+|..+...+.+.+.++..... . ..+.+.|+++|+++++...+++++.
T Consensus 158 ~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii~ 206 (218)
T 1z6g_A 158 RNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYLL 206 (218)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHHH
Confidence 999888888877766532100 0 0346677888888888877766543
No 132
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.63 E-value=1.7e-18 Score=180.65 Aligned_cols=96 Identities=10% Similarity=0.090 Sum_probs=74.4
Q ss_pred ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCC
Q psy7365 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV 158 (601)
Q Consensus 79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~ 158 (601)
+||||| |||| + .++|+|+++|+.|. +.+++|||++.+++. |+.||+.+.. .+|.
T Consensus 96 ~G~sGs--GKST-----L-~~~L~gll~~~~G~----------------~~v~~v~qd~~~~~~-t~~e~~~~~~-~~g~ 149 (312)
T 3aez_A 96 AGSVAV--GKST-----T-ARVLQALLARWDHH----------------PRVDLVTTDGFLYPN-AELQRRNLMH-RKGF 149 (312)
T ss_dssp ECCTTS--CHHH-----H-HHHHHHHHHTSTTC----------------CCEEEEEGGGGBCCH-HHHHHTTCTT-CTTS
T ss_pred ECCCCc--hHHH-----H-HHHHHhhccccCCC----------------CeEEEEecCccCCcc-cHHHHHHHHH-hcCC
Confidence 999999 4555 4 46999999997653 468999999988888 9999986532 2455
Q ss_pred ChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhh
Q psy7365 159 PKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVW 201 (601)
Q Consensus 159 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~ 201 (601)
+......++.+.++.++ .+..+.++.+|||||+||+++|+++
T Consensus 150 ~~~~d~~~~~~~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al 191 (312)
T 3aez_A 150 PESYNRRALMRFVTSVK-SGSDYACAPVYSHLHYDIIPGAEQV 191 (312)
T ss_dssp GGGBCHHHHHHHHHHHH-TTCSCEEEEEEETTTTEEEEEEEEE
T ss_pred ChHHHHHHHHHHHHHhC-CCcccCCcccCChhhhhhhhhHHHh
Confidence 54444566788899998 6666788999999999999876543
No 133
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.63 E-value=3.9e-16 Score=173.28 Aligned_cols=81 Identities=16% Similarity=0.195 Sum_probs=75.3
Q ss_pred ccccCcC-ChHHHHHHHHHHHHhCCC--CEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEE
Q psy7365 425 DREVRTL-SGGNKRKLSTAIALLGNT--PLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLT 501 (601)
Q Consensus 425 ~~~~~~L-SgGqkQRl~lA~AL~~~P--~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~ 501 (601)
.+++.+| ||||||||+||+||+.+| ++|||||||+|||+.++..++++|+++++ |.|||++||+++.+. +|||++
T Consensus 391 ~~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~~~~-~~d~~~ 468 (517)
T 4ad8_A 391 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQIAA-RAHHHY 468 (517)
T ss_dssp CCBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHHHHH-HSSEEE
T ss_pred cccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHH-hCCEEE
Confidence 3678888 999999999999999999 99999999999999999999999999987 899999999999876 699999
Q ss_pred EEeCCE
Q psy7365 502 IMVNGQ 507 (601)
Q Consensus 502 iL~~G~ 507 (601)
+|++|.
T Consensus 469 ~~~~~~ 474 (517)
T 4ad8_A 469 KVEKQV 474 (517)
T ss_dssp EEECCE
T ss_pred EEeccc
Confidence 997653
No 134
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.63 E-value=8e-16 Score=160.65 Aligned_cols=84 Identities=25% Similarity=0.296 Sum_probs=74.6
Q ss_pred cccccccCcCChHHHHHHHHHHHHh----CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhC
Q psy7365 422 HYSDREVRTLSGGNKRKLSTAIALL----GNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALC 497 (601)
Q Consensus 422 ~~~~~~~~~LSgGqkQRl~lA~AL~----~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~ 497 (601)
+..++++.+||+|||||++||++|+ .+|++|||||||++||+..++.++++|+++. +|+|||++||++ ++..+|
T Consensus 211 ~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~-~~~~~~ 288 (322)
T 1e69_A 211 GRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNK-IVMEAA 288 (322)
T ss_dssp TSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCT-TGGGGC
T ss_pred ccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCH-HHHhhC
Confidence 4467788999999999999999997 6899999999999999999999999999984 589999999996 467789
Q ss_pred CEE--EEEeCCE
Q psy7365 498 TKL--TIMVNGQ 507 (601)
Q Consensus 498 drv--~iL~~G~ 507 (601)
|++ ++|.+|.
T Consensus 289 d~~~~v~~~~g~ 300 (322)
T 1e69_A 289 DLLHGVTMVNGV 300 (322)
T ss_dssp SEEEEEEESSSC
T ss_pred ceEEEEEEeCCE
Confidence 987 7777774
No 135
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.62 E-value=2.5e-19 Score=186.08 Aligned_cols=156 Identities=9% Similarity=0.050 Sum_probs=111.1
Q ss_pred hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCch
Q psy7365 50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDM 123 (601)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~ 123 (601)
+.+++|++.|+ .++|+|+||++.+ +||||| ||||| .++|+|++ +|+|.
T Consensus 102 i~~~~vs~~y~-----~~vL~~vsl~i~~Ge~vaIvGpsGs--GKSTL------l~lL~gl~---~G~I~---------- 155 (305)
T 2v9p_A 102 FNYQNIELITF-----INALKLWLKGIPKKNCLAFIGPPNT--GKSML------CNSLIHFL---GGSVL---------- 155 (305)
T ss_dssp HHHTTCCHHHH-----HHHHHHHHHTCTTCSEEEEECSSSS--SHHHH------HHHHHHHH---TCEEE----------
T ss_pred EEEEEEEEEcC-----hhhhccceEEecCCCEEEEECCCCC--cHHHH------HHHHhhhc---CceEE----------
Confidence 56999999986 4699999999988 999999 56655 56999998 79883
Q ss_pred HHhcccEEEEccCCCCCCCCCHHH-HHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhc
Q psy7365 124 TTIRRSLGVCPQYNALFDKLTVEE-HMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWF 202 (601)
Q Consensus 124 ~~~~~~ig~v~Q~~~~~~~~tv~e-~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~ 202 (601)
++++|++.+|. .|+++ |+.|+.. .+ + .+.+.++.+ |+...+ ..+|||||||| |||++
T Consensus 156 -------~~v~q~~~lf~-~ti~~~ni~~~~~---~~-~----~~~~~i~~~-L~~gld--g~~LSgGqkQR---ARAll 213 (305)
T 2v9p_A 156 -------SFANHKSHFWL-ASLADTRAALVDD---AT-H----ACWRYFDTY-LRNALD--GYPVSIDRKHK---AAVQI 213 (305)
T ss_dssp -------CGGGTTSGGGG-GGGTTCSCEEEEE---EC-H----HHHHHHHHT-TTGGGG--TCCEECCCSSC---CCCEE
T ss_pred -------EEecCcccccc-ccHHHHhhccCcc---cc-H----HHHHHHHHH-hHccCC--ccCcCHHHHHH---HHHHh
Confidence 45788887775 36776 7765421 11 1 344556654 444444 78999999999 55543
Q ss_pred chhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEE
Q psy7365 203 NNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVI 282 (601)
Q Consensus 203 ~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~li 282 (601)
.+ |++||
T Consensus 214 ~~-------------------------------------------------------------------------p~iLl 220 (305)
T 2v9p_A 214 KA-------------------------------------------------------------------------PPLLV 220 (305)
T ss_dssp CC-------------------------------------------------------------------------CCEEE
T ss_pred CC-------------------------------------------------------------------------CCEEE
Confidence 33 47888
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcccc
Q psy7365 283 LDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 351 (601)
Q Consensus 283 LDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lL 351 (601)
|++||+.+...+.. +||+++.+ ..||+| +|.+|+++..|+...+
T Consensus 221 ----Ts~LD~~~~~~i~~-------------------ltH~~~~~-~~aD~i-vl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 221 ----TSNIDVQAEDRYLY-------------------LHSRVQTF-RFEQPC-TDESGEQPFNITDADW 264 (305)
T ss_dssp ----EESSCSTTCGGGGG-------------------GTTTEEEE-ECCCCC-CCC---CCCCCCHHHH
T ss_pred ----ECCCCHHHHHHHHH-------------------HhCCHHHH-HhCCEE-EEeCCEEEEeCCHHHH
Confidence 99999998877641 16887654 589999 9999999887765433
No 136
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.61 E-value=2.1e-15 Score=144.21 Aligned_cols=80 Identities=16% Similarity=0.182 Sum_probs=69.7
Q ss_pred ccccccCcCChHHHHHHHHHHHHh----CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCC
Q psy7365 423 YSDREVRTLSGGNKRKLSTAIALL----GNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCT 498 (601)
Q Consensus 423 ~~~~~~~~LSgGqkQRl~lA~AL~----~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~d 498 (601)
...+++..||||||||++||++++ ..|+++||||||+|||+.+++.++++|+++.+ +.++|++||+... ..+||
T Consensus 57 ~~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~~~-~~~ad 134 (173)
T 3kta_B 57 KDVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRDVM-MANAD 134 (173)
T ss_dssp SSCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCHHH-HTTCS
T ss_pred ccccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecHHH-HHhCC
Confidence 345678899999999999999997 45799999999999999999999999999864 4689999999765 57899
Q ss_pred EEEEEe
Q psy7365 499 KLTIMV 504 (601)
Q Consensus 499 rv~iL~ 504 (601)
+++.+.
T Consensus 135 ~i~~v~ 140 (173)
T 3kta_B 135 KIIGVS 140 (173)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 998654
No 137
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.60 E-value=5.1e-16 Score=164.77 Aligned_cols=86 Identities=20% Similarity=0.289 Sum_probs=79.2
Q ss_pred ccccC-cCChHHHHHHHHHHHHh---------CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHH
Q psy7365 425 DREVR-TLSGGNKRKLSTAIALL---------GNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECE 494 (601)
Q Consensus 425 ~~~~~-~LSgGqkQRl~lA~AL~---------~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~ 494 (601)
++++. .||||||||++||++|+ .+|++|||||||++||+..+..+++.|.++. .|+|++||. ++
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~~-- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-AP-- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-CT--
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-cc--
Confidence 56787 89999999999999999 8999999999999999999999999998863 799999994 54
Q ss_pred hhCCEEEEEeCCEEEEecCHHHH
Q psy7365 495 ALCTKLTIMVNGQFTCLGSATHL 517 (601)
Q Consensus 495 ~l~drv~iL~~G~iv~~G~~~~L 517 (601)
.||++++|++|+++..|+++++
T Consensus 333 -~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 -GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp -TCSEEEEEETTEEEECCCTTTS
T ss_pred -cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999999876
No 138
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.59 E-value=5.6e-17 Score=170.34 Aligned_cols=127 Identities=15% Similarity=0.096 Sum_probs=94.3
Q ss_pred eeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHHhcccEEEEccCCCCCC
Q psy7365 68 GISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFD 141 (601)
Q Consensus 68 ~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~Q~~~~~~ 141 (601)
+++++||.+.+ +||||| ||||| .++|+|+++|++|.|+++|.+... ....++.+++++|
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~Gs--GKTTl------l~~l~g~~~~~~g~i~i~~~~e~~-~~~~~~~i~~~~g------ 224 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGS--GKTTY------IKSIMEFIPKEERIISIEDTEEIV-FKHHKNYTQLFFG------ 224 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTS--CHHHH------HHHGGGGSCTTSCEEEEESSCCCC-CSSCSSEEEEECB------
T ss_pred HHhhhhhhccCCCEEEEECCCCC--CHHHH------HHHHhCCCcCCCcEEEECCeeccc-cccchhEEEEEeC------
Confidence 78999999876 999999 56554 579999999999999999975321 1113445666541
Q ss_pred CCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhh
Q psy7365 142 KLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVI 221 (601)
Q Consensus 142 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~ 221 (601)
|||+||++++++|
T Consensus 225 -----------------------------------------------gg~~~r~~la~aL-------------------- 237 (330)
T 2pt7_A 225 -----------------------------------------------GNITSADCLKSCL-------------------- 237 (330)
T ss_dssp -----------------------------------------------TTBCHHHHHHHHT--------------------
T ss_pred -----------------------------------------------CChhHHHHHHHHh--------------------
Confidence 8999998753322
Q ss_pred HhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHH
Q psy7365 222 LRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWEL 301 (601)
Q Consensus 222 ~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~ 301 (601)
.. .|++++|||||+. ++++.
T Consensus 238 ------------------~~-----------------------------------~p~ilildE~~~~-------e~~~~ 257 (330)
T 2pt7_A 238 ------------------RM-----------------------------------RPDRIILGELRSS-------EAYDF 257 (330)
T ss_dssp ------------------TS-----------------------------------CCSEEEECCCCST-------HHHHH
T ss_pred ------------------hh-----------------------------------CCCEEEEcCCChH-------HHHHH
Confidence 22 2589999999982 35667
Q ss_pred HHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCcc
Q psy7365 302 LIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKL 342 (601)
Q Consensus 302 l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkI 342 (601)
|+.+. ..+.|+++++|+.+ +...|||+++|.+|..
T Consensus 258 l~~~~-----~g~~tvi~t~H~~~-~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 258 YNVLC-----SGHKGTLTTLHAGS-SEEAFIRLANMSSSNS 292 (330)
T ss_dssp HHHHH-----TTCCCEEEEEECSS-HHHHHHHHHHHHHTSG
T ss_pred HHHHh-----cCCCEEEEEEcccH-HHHHhhhheehhcCCc
Confidence 76652 23458999999999 7889999999988864
No 139
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.56 E-value=5.7e-17 Score=168.13 Aligned_cols=123 Identities=17% Similarity=0.068 Sum_probs=52.5
Q ss_pred cccccccccCCCccceeecceEEeecccCCCCCCCccccchhhhHHHhccCC-CCCCeeEEEEccccCCCchHHhcccEE
Q psy7365 53 ESLSENRDKLGIDSYGISDTSLEEQPLGPSGITLGLHTLGLEFVSRSMLMGM-LPVSSGTAKIYDHDIRTDMTTIRRSLG 131 (601)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl-~~~~~G~v~~~g~~~~~~~~~~~~~ig 131 (601)
.+|++.|++. .+++|++|.+.-+||||+ ||||| .++|.|. +.|++| +.++|.++.... ..+.++
T Consensus 2 ~~l~~~~~~~----~~l~~~~~~I~lvG~nG~--GKSTL------l~~L~g~~~~~~~g-i~~~g~~~~~t~--~~~~~~ 66 (301)
T 2qnr_A 2 SNLPNQVHRK----SVKKGFEFTLMVVGESGL--GKSTL------INSLFLTDLYPERV-ISGAAEKIERTV--QIEAST 66 (301)
T ss_dssp --------------------CEEEEEEEETTS--SHHHH------HHHHHC---------------------------CE
T ss_pred CCCcceECCE----EEEcCCCEEEEEECCCCC--CHHHH------HHHHhCCCccCCCC-cccCCcccCCcc--eEeeEE
Confidence 3678888653 499999999999999999 56654 5688898 889999 888888764321 135689
Q ss_pred EEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhch
Q psy7365 132 VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNV 198 (601)
Q Consensus 132 ~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~ 198 (601)
+++|.+.++..+|++|+..|+..... .+..+..+.. +.+..++++.++|||||||+.+|
T Consensus 67 ~~~q~~~~~~~ltv~Dt~g~~~~~~~--~e~~~~l~~~------l~~~~~~~~~~~sgg~rqrv~~a 125 (301)
T 2qnr_A 67 VEIEERGVKLRLTVVDTPGYGDAINC--RDCFKTIISY------IDEQFERYLHDESGLNRRHIIDN 125 (301)
T ss_dssp EEEC---CCEEEEEEEEC-------------CTTHHHH------HHHHHHHHHHHHTSSCCTTCCCC
T ss_pred EEecCCCcccCcchhhhhhhhhhcCc--HHHHHHHHHH------HHHHHHHHHHHhCHHhhhhhhhh
Confidence 99999888888999998877543210 0100111111 12334678999999999998753
No 140
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.54 E-value=1.7e-16 Score=156.15 Aligned_cols=133 Identities=10% Similarity=0.148 Sum_probs=79.9
Q ss_pred hcCCEEEEecCCccccccCcccccc------ccccccccccccCCcccccccccCCCCcccCCCCCHHHHH-HHh----H
Q psy7365 329 LLGDRIAIIAAGKLQCCGSSVFLKN------SFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHL-EFY----S 397 (601)
Q Consensus 329 ~l~Drv~vL~~GkIv~~G~~~lLk~------~~g~g~~igld~~~~~~~~~ig~v~Q~~~l~~~lTv~E~L-~~~----~ 397 (601)
.-++.+++++... +|++++++. ..|..............++.+||+||++ +||+ .+. .
T Consensus 20 ~~Ge~~~liG~nG---sGKSTLl~~l~Gl~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~--------~enl~~~~~~~~~ 88 (208)
T 3b85_A 20 DTNTIVFGLGPAG---SGKTYLAMAKAVQALQSKQVSRIILTRPAVEAGEKLGFLPGTL--------NEKIDPYLRPLHD 88 (208)
T ss_dssp HHCSEEEEECCTT---SSTTHHHHHHHHHHHHTTSCSEEEEEECSCCTTCCCCSSCC--------------CTTTHHHHH
T ss_pred cCCCEEEEECCCC---CCHHHHHHHHhcCCCcCCeeeeEEecCCchhhhcceEEecCCH--------HHHHHHHHHHHHH
Confidence 4577778886422 566654432 1222211001111122456799999986 3333 221 1
Q ss_pred HhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Q psy7365 398 RVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAV 477 (601)
Q Consensus 398 ~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~ 477 (601)
.+..... .++++++++. ++ |||||++||+||+.+|++|||||||+| ++..++++|+++
T Consensus 89 ~~~~~~~---~~~~~~~l~~-gl-------------Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l- 146 (208)
T 3b85_A 89 ALRDMVE---PEVIPKLMEA-GI-------------VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL- 146 (208)
T ss_dssp HHTTTSC---TTHHHHHHHT-TS-------------EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-
T ss_pred HHHHhcc---HHHHHHHHHh-CC-------------chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-
Confidence 1111111 2345666765 44 999999999999999999999999999 899999999998
Q ss_pred hCCcEEEEEccChhHHHh
Q psy7365 478 SEGRCVILTSHNMEECEA 495 (601)
Q Consensus 478 ~~G~tVllsTHdl~e~~~ 495 (601)
++|+||| +|||+++++.
T Consensus 147 ~~g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 147 GFGSKMV-VTGDITQVDL 163 (208)
T ss_dssp CTTCEEE-EEEC------
T ss_pred cCCCEEE-EECCHHHHhC
Confidence 6789999 9999998764
No 141
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.53 E-value=1.4e-16 Score=168.42 Aligned_cols=187 Identities=17% Similarity=0.134 Sum_probs=126.8
Q ss_pred hhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC
Q psy7365 48 YVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT 121 (601)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~ 121 (601)
++...+++++.|++ +..+|+++ |++.+ +||||| ||||| .++|+|+.+|++|.|.+.|.+...
T Consensus 44 ~~i~~~~l~~~~~t---g~~ald~l-l~i~~Gq~~gIiG~nGa--GKTTL------l~~I~g~~~~~~g~i~~~G~~~~e 111 (347)
T 2obl_A 44 DPLLRQVIDQPFIL---GVRAIDGL-LTCGIGQRIGIFAGSGV--GKSTL------LGMICNGASADIIVLALIGERGRE 111 (347)
T ss_dssp CSTTCCCCCSEECC---SCHHHHHH-SCEETTCEEEEEECTTS--SHHHH------HHHHHHHSCCSEEEEEEESCCHHH
T ss_pred CCeeecccceecCC---CCEEEEee-eeecCCCEEEEECCCCC--CHHHH------HHHHhcCCCCCEEEEEEecccHHH
Confidence 35668999999862 35699999 99988 999999 56654 679999999999999999975211
Q ss_pred --------chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCc-ccCCccccCChHHH
Q psy7365 122 --------DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPH-KRTSLANTLSGGMQ 192 (601)
Q Consensus 122 --------~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG~~ 192 (601)
.....++.+++++|.+. ...+.+....... .+.+.+...|-.- ..-..+..||+||
T Consensus 112 v~~~i~~~~~~~~~~~v~~~~~~~~-----~~~~r~~~~~~~~---------~~ae~~~~~~~~vl~~ld~~~~lS~g~- 176 (347)
T 2obl_A 112 VNEFLALLPQSTLSKCVLVVTTSDR-----PALERMKAAFTAT---------TIAEYFRDQGKNVLLMMDSVTRYARAA- 176 (347)
T ss_dssp HHHHHTTSCHHHHTTEEEEEECTTS-----CHHHHHHHHHHHH---------HHHHHHHTTTCEEEEEEETHHHHHHHH-
T ss_pred HHHHHHhhhhhhhhceEEEEECCCC-----CHHHHHHHHHHHH---------HHHHHHHhccccHHHHHhhHHHHHHHH-
Confidence 11234566888888632 2233322111100 0111111112000 0114688999999
Q ss_pred hhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHh
Q psy7365 193 RKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFA 272 (601)
Q Consensus 193 qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 272 (601)
||+++| +++
T Consensus 177 r~v~la-----------------------------------------l~~------------------------------ 185 (347)
T 2obl_A 177 RDVGLA-----------------------------------------SGE------------------------------ 185 (347)
T ss_dssp HHHHHH-----------------------------------------TTC------------------------------
T ss_pred HHHHHH-----------------------------------------cCC------------------------------
Confidence 887631 122
Q ss_pred hccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCc-----EEEEEecchhHHHhcCCEEEEecCCccccccC
Q psy7365 273 MSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGR-----TVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 347 (601)
Q Consensus 273 ~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~-----TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~ 347 (601)
|++ |+||||..+..+++++.++.. ...|. ||+++|||++ ..+||++++|.+|+++.+++
T Consensus 186 -----p~~------t~Gldp~~~~~l~~ller~~~---~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Ivl~~~ 249 (347)
T 2obl_A 186 -----PDV------RGGFPPSVFSSLPKLLERAGP---APKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIVLTRE 249 (347)
T ss_dssp -----CCC------BTTBCHHHHHHHHHHHTTCEE---CSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEEBCHH
T ss_pred -----CCc------ccCCCHHHHHHHHHHHHHHhC---CCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEEEeCC
Confidence 233 899999999999999988621 03477 8999999999 77899999999999988764
Q ss_pred c
Q psy7365 348 S 348 (601)
Q Consensus 348 ~ 348 (601)
.
T Consensus 250 l 250 (347)
T 2obl_A 250 L 250 (347)
T ss_dssp H
T ss_pred H
Confidence 3
No 142
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.53 E-value=6.3e-16 Score=158.83 Aligned_cols=179 Identities=14% Similarity=0.081 Sum_probs=109.9
Q ss_pred cceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCee-EEEEccccCCCchHHhcccEEEEccCCC
Q psy7365 66 SYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSG-TAKIYDHDIRTDMTTIRRSLGVCPQYNA 138 (601)
Q Consensus 66 ~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G-~v~~~g~~~~~~~~~~~~~ig~v~Q~~~ 138 (601)
..+|+++++.+.+ +||||+ ||||| + ++|+|.+.|++| .|.+.+.+. ....+++++..++|...
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~--GKTTl-----~-~~ia~~~~~~~G~~v~~~~~e~--~~~~~~~r~~~~~~~~~ 91 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGM--GKSTF-----V-RQQALQWGTAMGKKVGLAMLEE--SVEETAEDLIGLHNRVR 91 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTS--SHHHH-----H-HHHHHHHHHTSCCCEEEEESSS--CHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCC--CHHHH-----H-HHHHHHHHHHcCCeEEEEeCcC--CHHHHHHHHHHHHcCCC
Confidence 4579999988877 999999 56654 4 588999999888 786655443 23334444555555432
Q ss_pred CCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHH-HhhhhchhhhcchhhHHHHHHHhhhh
Q psy7365 139 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGM-QRKLDNVKVWFNNKAWIAAVSFMNAA 217 (601)
Q Consensus 139 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~-~qr~~~~~~~~~~~~~~a~~~~~~~~ 217 (601)
+ ++.+++..+. ++.++..+.+.++++..++. ....+.++|.++ +||+. +
T Consensus 92 ~----~~~~~l~~~~----~~~~~~~~~~~~~l~~~~l~--i~~~~~~~~~~~l~~~~~-a------------------- 141 (296)
T 1cr0_A 92 L----RQSDSLKREI----IENGKFDQWFDELFGNDTFH--LYDSFAEAETDRLLAKLA-Y------------------- 141 (296)
T ss_dssp G----GGCHHHHHHH----HHHTHHHHHHHHHHSSSCEE--EECCCCSCCHHHHHHHHH-H-------------------
T ss_pred h----hhccccccCC----CCHHHHHHHHHHHhccCCEE--EECCCCCCCHHHHHHHHH-H-------------------
Confidence 1 2233443321 22333444455555443332 223346788888 45532 1
Q ss_pred hhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCC---C---CC
Q psy7365 218 NNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTS---G---VD 291 (601)
Q Consensus 218 ~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPts---g---LD 291 (601)
+++.+ +|+++|+||||+ + +|
T Consensus 142 -------------------~~~~~-----------------------------------~p~llilDept~~~~~~~~~d 167 (296)
T 1cr0_A 142 -------------------MRSGL-----------------------------------GCDVIILDHISIVVSASGESD 167 (296)
T ss_dssp -------------------HHHTT-----------------------------------CCSEEEEEEEC----------
T ss_pred -------------------HHHhc-----------------------------------CCCEEEEcCccccCCCCCCCC
Confidence 01112 369999999999 5 45
Q ss_pred H-HHHHHHHHHHHHHhhhccccCCcEEEEEecch--h--------------------HHHhcCCEEEEecCCcc
Q psy7365 292 P-YSRRSIWELLIKVYYASHSLSGRTVILTTHYM--D--------------------EADLLGDRIAIIAAGKL 342 (601)
Q Consensus 292 ~-~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl--~--------------------~~~~l~Drv~vL~~GkI 342 (601)
+ .....+.+.|+++. +..|+|||++||+. + .+...||+|++|..|+.
T Consensus 168 ~~~~~~~i~~~L~~la----~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 168 ERKMIDNLMTKLKGFA----KSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp -CHHHHHHHHHHHHHH----HHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HHHHHHHHHHHHHHHH----HHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 5 66677888888773 23489999999995 5 67889999999998874
No 143
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.53 E-value=6.3e-15 Score=141.33 Aligned_cols=82 Identities=7% Similarity=-0.047 Sum_probs=71.2
Q ss_pred cccccccCcCChHHHHHHHHHHH-----HhCCCCEEEEEC--CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEc---cChh
Q psy7365 422 HYSDREVRTLSGGNKRKLSTAIA-----LLGNTPLIFLDE--PTSGMDPGARRFLWTCIERAVSEGRCVILTS---HNME 491 (601)
Q Consensus 422 ~~~~~~~~~LSgGqkQRl~lA~A-----L~~~P~lLlLDE--PTsGLD~~~~~~i~~lL~~l~~~G~tVllsT---Hdl~ 491 (601)
+..++++.+||||||||++||+| ++.+|+++|||| ||++||+..++.+++.+++ .+.|+|++| ||++
T Consensus 68 ~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~---~~~~~i~~~H~~h~~~ 144 (178)
T 1ye8_A 68 KLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD---PNVNVVATIPIRDVHP 144 (178)
T ss_dssp SEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC---TTSEEEEECCSSCCSH
T ss_pred ccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc---CCCeEEEEEccCCCch
Confidence 35678899999999999999996 999999999999 9999999999999988865 467788888 5999
Q ss_pred HHHhhCCEEEEEeCCEEEE
Q psy7365 492 ECEALCTKLTIMVNGQFTC 510 (601)
Q Consensus 492 e~~~l~drv~iL~~G~iv~ 510 (601)
+++.+|+| .+|+++.
T Consensus 145 ~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 145 LVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHHTC----TTCEEEE
T ss_pred HHHHHHhc----CCcEEEE
Confidence 99999998 4455544
No 144
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.53 E-value=3e-15 Score=166.42 Aligned_cols=143 Identities=9% Similarity=0.014 Sum_probs=104.7
Q ss_pred ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCC
Q psy7365 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV 158 (601)
Q Consensus 79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~ 158 (601)
.||||+ ||||| + ++++|+.+|. |. +.+.++||++. ..+.++. ...++
T Consensus 287 ~G~~Gs--GKSTL-----l-~~l~g~~~~~-G~----------------~vi~~~~ee~~----~~l~~~~----~~~g~ 333 (525)
T 1tf7_A 287 TGATGT--GKTLL-----V-SRFVENACAN-KE----------------RAILFAYEESR----AQLLRNA----YSWGM 333 (525)
T ss_dssp EECTTS--SHHHH-----H-HHHHHHHHTT-TC----------------CEEEEESSSCH----HHHHHHH----HTTSC
T ss_pred EeCCCC--CHHHH-----H-HHHHHHHHhC-CC----------------CEEEEEEeCCH----HHHHHHH----HHcCC
Confidence 899999 56654 4 5888888874 43 12566777652 0222222 23454
Q ss_pred ChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHH
Q psy7365 159 PKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIV 238 (601)
Q Consensus 159 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 238 (601)
+.+ + +..+|+....+..+.+|||||+||+.+|++
T Consensus 334 ~~~-------~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~-------------------------------------- 367 (525)
T 1tf7_A 334 DFE-------E-MERQNLLKIVCAYPESAGLEDHLQIIKSEI-------------------------------------- 367 (525)
T ss_dssp CHH-------H-HHHTTSEEECCCCGGGSCHHHHHHHHHHHH--------------------------------------
T ss_pred CHH-------H-HHhCCCEEEEEeccccCCHHHHHHHHHHHH--------------------------------------
Confidence 422 1 335777778889999999999999864321
Q ss_pred hhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHH-----HHHHHHHHHHHHhhhccccC
Q psy7365 239 AINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPY-----SRRSIWELLIKVYYASHSLS 313 (601)
Q Consensus 239 ~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~-----~~~~l~~~l~~l~~~~~~~~ 313 (601)
+.. .|+++|+| ||++||+. .+..++++++.++ ..
T Consensus 368 l~~-----------------------------------~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~-----~~ 406 (525)
T 1tf7_A 368 NDF-----------------------------------KPARIAID-SLSALARGVSNNAFRQFVIGVTGYAK-----QE 406 (525)
T ss_dssp HTT-----------------------------------CCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHH-----HT
T ss_pred Hhh-----------------------------------CCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHH-----hC
Confidence 112 36999999 99999999 9999999998873 46
Q ss_pred CcEEEEEecch----------hHHHhcCCEEEEecCCc
Q psy7365 314 GRTVILTTHYM----------DEADLLGDRIAIIAAGK 341 (601)
Q Consensus 314 G~TVI~~tHdl----------~~~~~l~Drv~vL~~Gk 341 (601)
|+|+|+++|+. .++..+||++++|..|+
T Consensus 407 g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 407 EITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp TCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred CCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 99999999999 78888999999999876
No 145
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.51 E-value=3.7e-15 Score=141.44 Aligned_cols=78 Identities=13% Similarity=0.061 Sum_probs=67.1
Q ss_pred cCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHH----------------HHHHHHHHHHHHHhCCc
Q psy7365 418 FALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPG----------------ARRFLWTCIERAVSEGR 481 (601)
Q Consensus 418 ~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~----------------~~~~i~~lL~~l~~~G~ 481 (601)
.+.....+ .....|+|||||++||+|++.+|++|+|||||+|||+. .+..+++.|++++++|.
T Consensus 72 ~g~~~~~~-~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~ 150 (171)
T 4gp7_A 72 LGKLTVVD-ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGF 150 (171)
T ss_dssp TTCCEEEE-SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTC
T ss_pred CCCeEEEE-CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCC
Confidence 45443333 33456999999999999999999999999999999999 66899999998877799
Q ss_pred EEEEEccChhHHHhh
Q psy7365 482 CVILTSHNMEECEAL 496 (601)
Q Consensus 482 tVllsTHdl~e~~~l 496 (601)
|+|++|||+++++.+
T Consensus 151 tvi~vtH~~~~~~~~ 165 (171)
T 4gp7_A 151 RYVYILNSPEEVEEV 165 (171)
T ss_dssp SEEEEECSHHHHHHE
T ss_pred cEEEEeCCHHHhhhh
Confidence 999999999999863
No 146
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.50 E-value=1.5e-15 Score=152.07 Aligned_cols=109 Identities=15% Similarity=0.151 Sum_probs=66.1
Q ss_pred CccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHHhcccEEEEccCC
Q psy7365 64 IDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYN 137 (601)
Q Consensus 64 ~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~Q~~ 137 (601)
++..+|+|+||++.+ +||||| |||| ++ ++|+|++ |.+.++ ..++.+++++|++
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~Gs--GKST-----l~-k~L~~~l----G~~~~~---------~~~~~i~~v~~d~ 68 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTAS--GKST-----VC-EKIMELL----GQNEVE---------QRQRKVVILSQDR 68 (245)
T ss_dssp -------------CCSEEEEEECSTTS--SHHH-----HH-HHHHHHH----TGGGSC---------GGGCSEEEEEGGG
T ss_pred CCceeecceeccCCCCEEEEEECCCCC--CHHH-----HH-HHHHHHh----chhccc---------ccCCceEEEeCCc
Confidence 356689999999977 999999 4554 44 6888876 444333 2467899999995
Q ss_pred CCCCCCCHHHHHHHhHhhcCCChH--HHHHHHHHHHHHcCCCcccCCccccCChHHHhhhh
Q psy7365 138 ALFDKLTVEEHMWFYSQLKQVPKD--LAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLD 196 (601)
Q Consensus 138 ~~~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~ 196 (601)
+|+.+|+.+++.+....++.+.. ....++.+.++.+ .+..++++.+||+||+||++
T Consensus 69 -~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--~~~~~~~~~~ls~g~~~r~~ 126 (245)
T 2jeo_A 69 -FYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNI--VEGKTVEVPTYDFVTHSRLP 126 (245)
T ss_dssp -GBCCCCHHHHHHHHTTCCCTTSGGGBCHHHHHHHHHHH--HTTCCEEECCEETTTTEECS
T ss_pred -CccccCHhHhhhhhccCCCCCCcccccHHHHHHHHHHH--HCCCCeecccccccccCccC
Confidence 77889999999876554443211 1123344555543 45567889999999999985
No 147
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.50 E-value=6.6e-14 Score=148.98 Aligned_cols=78 Identities=28% Similarity=0.362 Sum_probs=69.7
Q ss_pred cccCcCChHHHHHH------HHHHHHhCC-CCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCC
Q psy7365 426 REVRTLSGGNKRKL------STAIALLGN-TPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCT 498 (601)
Q Consensus 426 ~~~~~LSgGqkQRl------~lA~AL~~~-P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~d 498 (601)
+++..||||||||+ ++|++++.+ |+++||||||+|||+..+..+++.|+++. ++.+||++||+++ +..+||
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~-~~~~~d 353 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE-LEDVAD 353 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG-GGGGCS
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH-HHhhCC
Confidence 56789999999988 567889999 99999999999999999999999999864 4568999999986 688999
Q ss_pred EEEEEeC
Q psy7365 499 KLTIMVN 505 (601)
Q Consensus 499 rv~iL~~ 505 (601)
++++|++
T Consensus 354 ~~~~l~k 360 (371)
T 3auy_A 354 VIINVKK 360 (371)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 9999973
No 148
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.50 E-value=6.5e-16 Score=183.33 Aligned_cols=177 Identities=16% Similarity=0.174 Sum_probs=112.1
Q ss_pred eeeeecCCCCCC-ccchhhhhcc-----cccccccCCCccceeecceEEee---------c----ccCCCCCCCccccch
Q psy7365 33 EVTYVLPQDPAS-MGAYVSLFES-----LSENRDKLGIDSYGISDTSLEEQ---------P----LGPSGITLGLHTLGL 93 (601)
Q Consensus 33 ~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~---------~----~g~~g~~~g~~~~g~ 93 (601)
+..|+.|..... .......+++ |++.|. ++.++++|++|++. . +||||+ |||||
T Consensus 733 ~~~~~~P~~~~~~~~~~~l~i~~~rHP~l~~~~~---~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgs--GKSTl-- 805 (1022)
T 2o8b_B 733 DGPMCRPVILLPEDTPPFLELKGSRHPCITKTFF---GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMG--GKSTL-- 805 (1022)
T ss_dssp SSCEECCEECCTTTSCCCEEEEEECCCC---------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTS--SHHHH--
T ss_pred cCCccCCccccCCCCCceEEEEeccccEEEEEec---CCceEeeeeeeccccccccCCCCcEEEEECCCCC--ChHHH--
Confidence 455777765421 1223455888 888872 23569999999873 2 999999 56654
Q ss_pred hhhHHHhccCCCCCCeeEEEEccccCCCchHHhcccEE-EEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHH
Q psy7365 94 EFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLG-VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIG 172 (601)
Q Consensus 94 ~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig-~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~ 172 (601)
+|++ |++++ ..++| ||||++. .++|.+++. .
T Consensus 806 ----Lr~i-Gl~~~-------------------~aqiG~~Vpq~~~---~l~v~d~I~---------------------~ 837 (1022)
T 2o8b_B 806 ----MRQA-GLLAV-------------------MAQMGCYVPAEVC---RLTPIDRVF---------------------T 837 (1022)
T ss_dssp ----HHHH-HHHHH-------------------HHTTTCCEESSEE---EECCCSBEE---------------------E
T ss_pred ----HHHH-HHHHH-------------------HhheeEEeccCcC---CCCHHHHHH---------------------H
Confidence 5688 99874 12456 9999863 445555441 1
Q ss_pred HcCCCcccCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHH
Q psy7365 173 DLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMA 252 (601)
Q Consensus 173 ~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 252 (601)
++|+.+...+..+++|++|++ ++++ ++ ++
T Consensus 838 rig~~d~~~~~~stf~~em~~-~a~a------------------------l~--------------la------------ 866 (1022)
T 2o8b_B 838 RLGASDRIMSGESTFFVELSE-TASI------------------------LM--------------HA------------ 866 (1022)
T ss_dssp ECC---------CHHHHHHHH-HHHH------------------------HH--------------HC------------
T ss_pred HcCCHHHHhhchhhhHHHHHH-HHHH------------------------HH--------------hC------------
Confidence 234444444456788998887 4321 11 11
Q ss_pred HHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHHHH-HHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcC
Q psy7365 253 LETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSR-RSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLG 331 (601)
Q Consensus 253 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~-~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~ 331 (601)
.+|+++|||||++|+|+... ..++++|+++. +..|.++|++||+++++..++
T Consensus 867 -----------------------~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~----~~~g~~vl~~TH~~el~~~~~ 919 (1022)
T 2o8b_B 867 -----------------------TAHSLVLVDELGRGTATFDGTAIANAVVKELA----ETIKCRTLFSTHYHSLVEDYS 919 (1022)
T ss_dssp -----------------------CTTCEEEEECTTTTSCHHHHHHHHHHHHHHHH----HTSCCEEEEECCCHHHHHHTS
T ss_pred -----------------------CCCcEEEEECCCCCCChHHHHHHHHHHHHHHH----hcCCCEEEEEeCCHHHHHHhC
Confidence 23689999999999999874 55789998873 223899999999999999999
Q ss_pred CEEEEecCCccc
Q psy7365 332 DRIAIIAAGKLQ 343 (601)
Q Consensus 332 Drv~vL~~GkIv 343 (601)
|++.++ +|++.
T Consensus 920 d~~~v~-~g~~~ 930 (1022)
T 2o8b_B 920 QNVAVR-LGHMA 930 (1022)
T ss_dssp SCSSEE-EEEEE
T ss_pred Ccceee-cCeEE
Confidence 998876 46654
No 149
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.48 E-value=8.4e-16 Score=152.40 Aligned_cols=58 Identities=21% Similarity=0.154 Sum_probs=47.3
Q ss_pred CCcEEEEecCCCCCC-----HHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHH---------HhcC-CEEEEecC
Q psy7365 277 PASTVILDEPTSGVD-----PYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEA---------DLLG-DRIAIIAA 339 (601)
Q Consensus 277 ~~~~liLDEPtsgLD-----~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~---------~~l~-Drv~vL~~ 339 (601)
.|++++|||||++|| +..++.++++++.++ ..|+|||++||+++++ ..+| |++++|..
T Consensus 135 ~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~-----~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 135 NAKRLVIDSIPSIALRLEEERKIREVLLKLNTILL-----EMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp TCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHH-----HHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred CCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHH-----HCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 479999999999997 677777999998873 3589999999999998 6888 99999963
No 150
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.47 E-value=1.3e-13 Score=131.83 Aligned_cols=55 Identities=18% Similarity=0.162 Sum_probs=46.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEec
Q psy7365 277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIA 338 (601)
Q Consensus 277 ~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~ 338 (601)
||+++||||||+|||+..+..++++|+++. .+.++|++||+... ...||+++.+.
T Consensus 86 ~~~~llLDEp~a~LD~~~~~~~~~~l~~~~------~~~~~ivith~~~~-~~~ad~i~~v~ 140 (173)
T 3kta_B 86 PAPFYLFDEIDAHLDDANVKRVADLIKESS------KESQFIVITLRDVM-MANADKIIGVS 140 (173)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHT------TTSEEEEECSCHHH-HTTCSEEEEEE
T ss_pred CCCEEEECCCccCCCHHHHHHHHHHHHHhc------cCCEEEEEEecHHH-HHhCCEEEEEE
Confidence 468999999999999999999999998872 34689999999754 57899998664
No 151
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.46 E-value=1.4e-13 Score=149.11 Aligned_cols=82 Identities=20% Similarity=0.179 Sum_probs=73.1
Q ss_pred ccccccCcCChHHHHHHHHHHHHh----CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCC
Q psy7365 423 YSDREVRTLSGGNKRKLSTAIALL----GNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCT 498 (601)
Q Consensus 423 ~~~~~~~~LSgGqkQRl~lA~AL~----~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~d 498 (601)
...+++..||||||||++||++|+ .+|+++||||||++||+..+..++++|+++.++|.++|++||+.+. ...||
T Consensus 326 ~~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~-~~~~d 404 (430)
T 1w1w_A 326 KRFKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTM-FEKSD 404 (430)
T ss_dssp CCCCCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHH-HTTCS
T ss_pred ccccccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHH-HHhCC
Confidence 345678899999999999999999 6899999999999999999999999999986668899999999654 56799
Q ss_pred EEEEEeC
Q psy7365 499 KLTIMVN 505 (601)
Q Consensus 499 rv~iL~~ 505 (601)
+++.|..
T Consensus 405 ~~~~~~~ 411 (430)
T 1w1w_A 405 ALVGVYR 411 (430)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9999863
No 152
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.46 E-value=6.6e-14 Score=147.21 Aligned_cols=56 Identities=30% Similarity=0.343 Sum_probs=49.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEec
Q psy7365 277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIA 338 (601)
Q Consensus 277 ~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~ 338 (601)
+|++|||||||+||||..+..+++.|.++. ..|.|||++||+. ++...||++++|.
T Consensus 272 ~p~~lllDEp~~~LD~~~~~~l~~~l~~~~-----~~~~~vi~~sH~~-~~~~~~d~~~~l~ 327 (339)
T 3qkt_A 272 EISLLILDEPTPYLDEERRRKLITIMERYL-----KKIPQVILVSHDE-ELKDAADHVIRIS 327 (339)
T ss_dssp TTCEEEEECCCTTCCHHHHHHHHHHHHHTG-----GGSSEEEEEESCG-GGGGGCSEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHH-----hcCCEEEEEEChH-HHHHhCCEEEEEE
Confidence 368999999999999999999999999872 3478999999995 4678999999985
No 153
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.45 E-value=6.2e-15 Score=166.76 Aligned_cols=158 Identities=15% Similarity=0.096 Sum_probs=101.2
Q ss_pred ccCCCCCCCccccchhhhHHHhccCCCCC-CeeEEEEccccCCC----chHHhcccEEEEccCCCCCCCCCHHHHHHHhH
Q psy7365 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPV-SSGTAKIYDHDIRT----DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYS 153 (601)
Q Consensus 79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~-~~G~v~~~g~~~~~----~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~ 153 (601)
+||||| |||| + .++|+|+..| ++|.|+++|.++.. .....++.+||+||++.+++.+||.||+.+..
T Consensus 51 vG~nGs--GKST-----L-L~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~ 122 (608)
T 3szr_A 51 IGDQSS--GKSS-----V-LEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ 122 (608)
T ss_dssp CCCTTS--CHHH-----H-HHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH
T ss_pred ECCCCC--hHHH-----H-HHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHH
Confidence 999999 4555 4 5799999988 89999999998621 12345778999999999999999999998754
Q ss_pred hhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcc
Q psy7365 154 QLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRD 233 (601)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~ 233 (601)
...+.. + ..+| ++++.++.
T Consensus 123 ~~~~~~---------------~---------~~~s---~~~i~l~i---------------------------------- 141 (608)
T 3szr_A 123 NAIAGE---------------G---------MGIS---HELITLEI---------------------------------- 141 (608)
T ss_dssp HHHHCS---------------S---------SCCC---SCCEEEEE----------------------------------
T ss_pred HHhcCC---------------c---------cccc---hHHHHHHh----------------------------------
Confidence 332110 0 0111 12222110
Q ss_pred hhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecC------CCCCCHHHHHHHHHHHHHHhh
Q psy7365 234 DYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEP------TSGVDPYSRRSIWELLIKVYY 307 (601)
Q Consensus 234 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEP------tsgLD~~~~~~l~~~l~~l~~ 307 (601)
... ..|+++++||| |+|||+..+..+++++.++..
T Consensus 142 ----~~~-----------------------------------~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~ 182 (608)
T 3szr_A 142 ----SSR-----------------------------------DVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQ 182 (608)
T ss_dssp ----EES-----------------------------------SSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTT
T ss_pred ----cCC-----------------------------------CCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHh
Confidence 001 12689999999 999999999999999998521
Q ss_pred hccccCCcEEEEEecchhHH--------Hhc----CCEEEEecCCccccccC
Q psy7365 308 ASHSLSGRTVILTTHYMDEA--------DLL----GDRIAIIAAGKLQCCGS 347 (601)
Q Consensus 308 ~~~~~~G~TVI~~tHdl~~~--------~~l----~Drv~vL~~GkIv~~G~ 347 (601)
+..+.++++++|+++.+ ..+ +..|+++.++..+..++
T Consensus 183 ---~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~ 231 (608)
T 3szr_A 183 ---RQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGT 231 (608)
T ss_dssp ---SSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSS
T ss_pred ---cCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCccc
Confidence 34578999999998733 221 34577888877766554
No 154
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.44 E-value=3.3e-17 Score=160.01 Aligned_cols=124 Identities=10% Similarity=-0.039 Sum_probs=99.9
Q ss_pred ccccccCCCCcccCCCCCHHHHHHH----hH--HhcCCChhHHHHHHHHH------HHHcCCCcccccccCcCChHHHHH
Q psy7365 371 KSYIGYCPQFDALNDRLTPREHLEF----YS--RVRNLPSVLLNTIVNES------LNKFALGHYSDREVRTLSGGNKRK 438 (601)
Q Consensus 371 ~~~ig~v~Q~~~l~~~lTv~E~L~~----~~--~~~g~~~~~~~~~~~~l------Le~~~L~~~~~~~~~~LSgGqkQR 438 (601)
++.++|+||++.+|+.+|+.+++.. +. .+++.+..+.++++++. ++.+++.+..++.+..||
T Consensus 63 ~~~i~~~~q~~~~~~~~~~~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS------ 136 (207)
T 1znw_A 63 VDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT------ 136 (207)
T ss_dssp CBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE------
T ss_pred cCCCeeEecCHHHHHHHHhcCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE------
Confidence 4679999999888888888777642 22 33455555555666665 677777777788888998
Q ss_pred HHHHHHHhCCCCEEEEECCCCCC----CHHHHHHHHHHHHHHHh-CCcEEEEEccChhHHHhhCCEEEEEeC
Q psy7365 439 LSTAIALLGNTPLIFLDEPTSGM----DPGARRFLWTCIERAVS-EGRCVILTSHNMEECEALCTKLTIMVN 505 (601)
Q Consensus 439 l~lA~AL~~~P~lLlLDEPTsGL----D~~~~~~i~~lL~~l~~-~G~tVllsTHdl~e~~~l~drv~iL~~ 505 (601)
+|+.+|++++|||||+|+ |+..+++++++++++.+ .|.|+|++|||++++..+||||++|..
T Consensus 137 -----~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~~ 203 (207)
T 1znw_A 137 -----VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGTA 203 (207)
T ss_dssp -----EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC---
T ss_pred -----EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhcc
Confidence 899999999999999998 78899999999999975 489999999999999999999999853
No 155
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.43 E-value=7.5e-16 Score=166.19 Aligned_cols=120 Identities=14% Similarity=0.022 Sum_probs=97.7
Q ss_pred ccCCCCcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChH--HHHHHHHHHHHhC-----
Q psy7365 375 GYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGG--NKRKLSTAIALLG----- 447 (601)
Q Consensus 375 g~v~Q~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgG--qkQRl~lA~AL~~----- 447 (601)
+|++|++ .++.+|++|++.+.. . +..++++++.+++.+.. ..+. ||+| ||||+.||++|++
T Consensus 111 ~~v~q~~-~~~~ltv~D~~g~~~-----~----~~~~~~~L~~~~L~~~~-~~~~-lS~G~~~kqrv~la~aL~~~~~p~ 178 (413)
T 1tq4_A 111 RHPYKHP-NIPNVVFWDLPGIGS-----T----NFPPDTYLEKMKFYEYD-FFII-ISATRFKKNDIDIAKAISMMKKEF 178 (413)
T ss_dssp CEEEECS-SCTTEEEEECCCGGG-----S----SCCHHHHHHHTTGGGCS-EEEE-EESSCCCHHHHHHHHHHHHTTCEE
T ss_pred EEecccc-ccCCeeehHhhcccc-----h----HHHHHHHHHHcCCCccC-CeEE-eCCCCccHHHHHHHHHHHhcCCCe
Confidence 8899985 577889998875431 1 12467889999987653 3344 9999 9999999999999
Q ss_pred -----CCCEEEEECCCCCCCHHHHHHHHHHHHHHH-----hCC----cEEEEEccChhH--HHhhCCEEE-EEeCC
Q psy7365 448 -----NTPLIFLDEPTSGMDPGARRFLWTCIERAV-----SEG----RCVILTSHNMEE--CEALCTKLT-IMVNG 506 (601)
Q Consensus 448 -----~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~-----~~G----~tVllsTHdl~e--~~~l~drv~-iL~~G 506 (601)
+|++++|||||+|||+.+++++++.|+++. +.| .+|+++||++++ ++.+||++. .|..|
T Consensus 179 ~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 179 YFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp EEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred EEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 999999999999999999999999999984 333 678999999998 999999985 45444
No 156
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.39 E-value=1.7e-15 Score=147.30 Aligned_cols=138 Identities=13% Similarity=0.036 Sum_probs=101.5
Q ss_pred ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHHhcccEEEEccCCCCC--CCCCHHHHHHHhHhhc
Q psy7365 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALF--DKLTVEEHMWFYSQLK 156 (601)
Q Consensus 79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~Q~~~~~--~~~tv~e~l~~~~~~~ 156 (601)
+||||| |||| ++ ++|+|+++| .+++++|++.++ ..+++.++..+..
T Consensus 12 ~G~~Gs--GKST-----l~-~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~--- 59 (211)
T 3asz_A 12 AGGTAS--GKTT-----LA-QALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNY--- 59 (211)
T ss_dssp EESTTS--SHHH-----HH-HHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT---
T ss_pred ECCCCC--CHHH-----HH-HHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCC---
Confidence 899999 4555 44 699998865 489999998766 5689998876532
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccCCccccCChHHH----hhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCc
Q psy7365 157 QVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQ----RKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSR 232 (601)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~----qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~ 232 (601)
+.+......++.++++.+++.+..++++.++|+||+ ||++++++|+.+
T Consensus 60 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~---------------------------- 111 (211)
T 3asz_A 60 DHPDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILE---------------------------- 111 (211)
T ss_dssp TSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEE----------------------------
T ss_pred CChhhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEe----------------------------
Confidence 222222234567788999988888889999999975 566554433322
Q ss_pred chhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCC-------CCHHHHHHHHHHHHHH
Q psy7365 233 DDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSG-------VDPYSRRSIWELLIKV 305 (601)
Q Consensus 233 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsg-------LD~~~~~~l~~~l~~l 305 (601)
|.++++||||++ ||+.....+++.+.+.
T Consensus 112 ---------------------------------------------~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~ 146 (211)
T 3asz_A 112 ---------------------------------------------GILVLYPKELRDLMDLKVFVDADADERFIRRLKRD 146 (211)
T ss_dssp ---------------------------------------------STTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHH
T ss_pred ---------------------------------------------ehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHH
Confidence 367888999999 8999888888888765
Q ss_pred hhhccccCCcEEEEEecchh
Q psy7365 306 YYASHSLSGRTVILTTHYMD 325 (601)
Q Consensus 306 ~~~~~~~~G~TVI~~tHdl~ 325 (601)
. +..|.|++.++|++.
T Consensus 147 ~----~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 147 V----LERGRSLEGVVAQYL 162 (211)
T ss_dssp H----HHSCCCHHHHHHHHH
T ss_pred H----HHhCCCHHHHHHHHH
Confidence 2 235889988899853
No 157
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.39 E-value=2e-14 Score=168.92 Aligned_cols=65 Identities=18% Similarity=0.350 Sum_probs=53.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHH-HHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCcccccc
Q psy7365 277 PASTVILDEPTSGVDPYSRRSI-WELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG 346 (601)
Q Consensus 277 ~~~~liLDEPtsgLD~~~~~~l-~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G 346 (601)
+|+++||||||+|+||.....+ +.++..+. +..|.|+|++||+.+. ..+||++..+.+|++...+
T Consensus 741 ~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~----~~~g~~vl~aTH~~el-~~lad~~~~v~ng~v~~~~ 806 (934)
T 3thx_A 741 KDSLIIIDELGRGTSTYDGFGLAWAISEYIA----TKIGAFCMFATHFHEL-TALANQIPTVNNLHVTALT 806 (934)
T ss_dssp TTCEEEEESCSCSSCHHHHHHHHHHHHHHHH----HTTCCEEEEEESCGGG-GGGGGTCTTEEEEEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH----hcCCCEEEEEcCcHHH-HHHhcccceeEeeEEEEEe
Confidence 4799999999999999988877 77777773 2248999999999654 4699999999999887654
No 158
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.37 E-value=6.9e-14 Score=151.20 Aligned_cols=125 Identities=14% Similarity=0.022 Sum_probs=67.9
Q ss_pred hhhcccccccccCCCccceeecceEEeecccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHHhccc
Q psy7365 50 SLFESLSENRDKLGIDSYGISDTSLEEQPLGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRS 129 (601)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ 129 (601)
+.+++|++.|+. ..+++|+||++.-+||||+ ||||| .++|+|...|+.|. +|.++..........
T Consensus 12 l~~~~l~~~y~~----~~vl~~vsf~I~lvG~sGa--GKSTL------ln~L~g~~~~~~~~---~~~~~~~~~t~~~~~ 76 (418)
T 2qag_C 12 VGFANLPNQVYR----KSVKRGFEFTLMVVGESGL--GKSTL------INSLFLTDLYSPEY---PGPSHRIKKTVQVEQ 76 (418)
T ss_dssp ---CCCCCCTTT----TTCC-CCCEEEEEECCTTS--SHHHH------HHHHTTCCCCCCCC---CSCC-----CCEEEE
T ss_pred EEEEecceeECC----EEEecCCCEEEEEECCCCC--cHHHH------HHHHhCCCCCCCCC---CCcccCCccceeeee
Confidence 448999999864 4599999999999999999 56654 56899998866551 333222111112356
Q ss_pred EEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcch
Q psy7365 130 LGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNN 204 (601)
Q Consensus 130 ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~ 204 (601)
+++++|.+.+++.+|++|++.|+....+ ......+.+.++ ..++.+++||++++|+++.+
T Consensus 77 i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~---~~~~~~i~~~i~------------~~~~~~l~qr~~IaRal~~d 136 (418)
T 2qag_C 77 SKVLIKEGGVQLLLTIVDTPGFGDAVDN---SNCWQPVIDYID------------SKFEDYLNAESRVNRRQMPD 136 (418)
T ss_dssp EECC------CEEEEEEECC--------------CHHHHHHHH------------HHHHHHTTTSCC-CCCCCCC
T ss_pred EEEEEecCCcccceeeeechhhhhhccc---hhhHHHHHHHHH------------HHHHHHHHHHHHHHHHhccC
Confidence 8999999988889999999877643211 111112222222 24566788998876654433
No 159
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.37 E-value=6.6e-15 Score=152.90 Aligned_cols=101 Identities=16% Similarity=0.084 Sum_probs=70.2
Q ss_pred ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCch--H---H--hcccEEEEccCCCCCCCCCHHHHHHH
Q psy7365 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDM--T---T--IRRSLGVCPQYNALFDKLTVEEHMWF 151 (601)
Q Consensus 79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~--~---~--~~~~ig~v~Q~~~~~~~~tv~e~l~~ 151 (601)
+||||| |||| ++ ++|+|+++|++|+|.+.|.++.... . . .+..++++||++.++|..++.+|+.+
T Consensus 108 vG~nGs--GKTT-----ll-~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 108 VGVNGV--GKTT-----TI-AKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp ECSTTS--SHHH-----HH-HHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred ECCCCC--cHHH-----HH-HHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 899999 4554 44 6899999999999999999975321 1 1 24579999999999999999999986
Q ss_pred hHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchh
Q psy7365 152 YSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVK 199 (601)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~ 199 (601)
... .+.+ ..+++..|+.+...+.+.+|| +||+++||
T Consensus 180 ~~~-~~~d--------~~llDt~G~~~~~~~~~~eLs---~~r~~iaR 215 (304)
T 1rj9_A 180 MKA-RGYD--------LLFVDTAGRLHTKHNLMEELK---KVKRAIAK 215 (304)
T ss_dssp HHH-HTCS--------EEEECCCCCCTTCHHHHHHHH---HHHHHHHH
T ss_pred HHh-CCCC--------EEEecCCCCCCchHHHHHHHH---HHHHHHHH
Confidence 532 1211 013455565554445555555 78876443
No 160
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.37 E-value=4.7e-13 Score=148.52 Aligned_cols=56 Identities=20% Similarity=0.226 Sum_probs=50.4
Q ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCc
Q psy7365 279 STVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGK 341 (601)
Q Consensus 279 ~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~Gk 341 (601)
++|||||||+|||+.++..+.++|+++. . |.|||++||+++.+. .||++++|.++.
T Consensus 419 ~~lilDEp~~gld~~~~~~i~~~l~~~~-----~-~~~vi~itH~~~~~~-~~d~~~~~~~~~ 474 (517)
T 4ad8_A 419 PSVVFDEVDAGIGGAAAIAVAEQLSRLA-----D-TRQVLVVTHLAQIAA-RAHHHYKVEKQV 474 (517)
T ss_dssp SEEEECSCSSSCCTHHHHHHHHHHHHHH-----H-HSEEEEECCCHHHHH-HSSEEEEEECCE
T ss_pred CEEEEeCCcCCCCHHHHHHHHHHHHHHh-----C-CCEEEEEecCHHHHH-hCCEEEEEeccc
Confidence 8999999999999999999999999983 3 789999999998776 699999997653
No 161
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.35 E-value=1.6e-14 Score=141.29 Aligned_cols=61 Identities=18% Similarity=0.137 Sum_probs=43.0
Q ss_pred CCcEEEEecCCCCCCHH-------H-----HHHHHHHHHHHhhhccccCCcEEEEEecchhH----HHhcCCEEEEecCC
Q psy7365 277 PASTVILDEPTSGVDPY-------S-----RRSIWELLIKVYYASHSLSGRTVILTTHYMDE----ADLLGDRIAIIAAG 340 (601)
Q Consensus 277 ~~~~liLDEPtsgLD~~-------~-----~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~----~~~l~Drv~vL~~G 340 (601)
.|+++++||||+++|+. . ...+++.|.++. +..|+|||++||.+.+ +...||+++++.+|
T Consensus 125 ~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~----~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 125 PVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLA----NLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp CEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHH----HHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred ceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHH----HHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 47999999999999983 2 225566666553 2358999999995554 89999999999876
Q ss_pred c
Q psy7365 341 K 341 (601)
Q Consensus 341 k 341 (601)
+
T Consensus 201 ~ 201 (231)
T 4a74_A 201 K 201 (231)
T ss_dssp T
T ss_pred C
Confidence 4
No 162
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.31 E-value=1.4e-13 Score=158.99 Aligned_cols=131 Identities=18% Similarity=0.194 Sum_probs=89.4
Q ss_pred ccceeecceEEeec----ccCCCCCCCccccchhhhHHHhccCCCC-CCeeEEEEccccCCCchHHhcccEEEEccCCCC
Q psy7365 65 DSYGISDTSLEEQP----LGPSGITLGLHTLGLEFVSRSMLMGMLP-VSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNAL 139 (601)
Q Consensus 65 ~~~~~~~~~~~~~~----~g~~g~~~g~~~~g~~~~~~~~l~Gl~~-~~~G~v~~~g~~~~~~~~~~~~~ig~v~Q~~~~ 139 (601)
+.++++|+||+ .. +||||+ ||||| .|+|+|+.. +..|.+. . ..+..+|+++| +
T Consensus 565 ~~~vl~disl~-g~i~~I~GpNGs--GKSTl------Lr~iagl~~~~~~G~~v------p----a~~~~i~~v~~---i 622 (765)
T 1ewq_A 565 TEFVPNDLEMA-HELVLITGPNMA--GKSTF------LRQTALIALLAQVGSFV------P----AEEAHLPLFDG---I 622 (765)
T ss_dssp SCCCCEEEEES-SCEEEEESCSSS--SHHHH------HHHHHHHHHHHTTTCCB------S----SSEEEECCCSE---E
T ss_pred CceEeeeccCC-CcEEEEECCCCC--ChHHH------HHHHHhhhhhcccCcee------e----hhccceeeHHH---h
Confidence 46799999997 44 999999 56654 579999874 6777642 1 11346888877 6
Q ss_pred CCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhh
Q psy7365 140 FDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANN 219 (601)
Q Consensus 140 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~ 219 (601)
|+.+++.||+.+ .+|+||+|++.+++++
T Consensus 623 ~~~~~~~d~l~~----------------------------------g~S~~~~e~~~la~il------------------ 650 (765)
T 1ewq_A 623 YTRIGASDDLAG----------------------------------GKSTFMVEMEEVALIL------------------ 650 (765)
T ss_dssp EEECCC----------------------------------------CCSHHHHHHHHHHHHH------------------
T ss_pred hccCCHHHHHHh----------------------------------cccHHHHHHHHHHHHH------------------
Confidence 777888887643 2588999997642210
Q ss_pred hhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecC---CCCCCHHHH-
Q psy7365 220 VILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEP---TSGVDPYSR- 295 (601)
Q Consensus 220 ~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEP---tsgLD~~~~- 295 (601)
.. +.+|+++||||| |++||+.+.
T Consensus 651 ------------------~~-----------------------------------a~~p~LlLLDEpgrGTs~lD~~~~~ 677 (765)
T 1ewq_A 651 ------------------KE-----------------------------------ATENSLVLLDEVGRGTSSLDGVAIA 677 (765)
T ss_dssp ------------------HH-----------------------------------CCTTEEEEEESTTTTSCHHHHHHHH
T ss_pred ------------------Hh-----------------------------------ccCCCEEEEECCCCCCCCcCHHHHH
Confidence 00 234699999999 999999876
Q ss_pred HHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcC
Q psy7365 296 RSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLG 331 (601)
Q Consensus 296 ~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~ 331 (601)
..+.+.|.+ .|.|+|++||+.++.. ++
T Consensus 678 ~~i~~~L~~--------~g~~vl~~TH~~~l~~-~~ 704 (765)
T 1ewq_A 678 TAVAEALHE--------RRAYTLFATHYFELTA-LG 704 (765)
T ss_dssp HHHHHHHHH--------HTCEEEEECCCHHHHT-CC
T ss_pred HHHHHHHHh--------CCCEEEEEeCCHHHHH-hh
Confidence 456666654 3789999999987754 44
No 163
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.30 E-value=1.4e-13 Score=139.88 Aligned_cols=133 Identities=16% Similarity=0.123 Sum_probs=82.0
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcccccccccc
Q psy7365 278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFAR 357 (601)
Q Consensus 278 ~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk~~~g~ 357 (601)
|+++++|||| |+.+...+ ++.. ..|.+|++++|+.+ +...|||++.|......
T Consensus 99 p~illlDEp~---D~~~~~~~---l~~~------~~g~~vl~t~H~~~-~~~~~dri~~l~~~~~~-------------- 151 (261)
T 2eyu_A 99 PDVIFVGEMR---DLETVETA---LRAA------ETGHLVFGTLHTNT-AIDTIHRIVDIFPLNQQ-------------- 151 (261)
T ss_dssp CSEEEESCCC---SHHHHHHH---HHHH------HTTCEEEEEECCSS-HHHHHHHHHHTSCGGGH--------------
T ss_pred CCEEEeCCCC---CHHHHHHH---HHHH------ccCCEEEEEeCcch-HHHHHHHHhhhcCcccc--------------
Confidence 6999999999 99886543 3322 25899999999987 56788887766431100
Q ss_pred ccccccccCCcccccccccCCCCcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHH
Q psy7365 358 GYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKR 437 (601)
Q Consensus 358 g~~igld~~~~~~~~~ig~v~Q~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQ 437 (601)
+.+.+ ... + ++.....++...+|+| |
T Consensus 152 ---------------------------------~~~~~--------------~l~---~--~l~~vi~qrl~~~~~G--~ 177 (261)
T 2eyu_A 152 ---------------------------------EQVRI--------------VLS---F--ILQGIISQRLLPKIGG--G 177 (261)
T ss_dssp ---------------------------------HHHHH--------------HHH---H--HEEEEEEEEEECCSSS--S
T ss_pred ---------------------------------chHHH--------------HHH---H--HhhEEEEEEeEecCCC--C
Confidence 00000 000 0 0000111111224577 8
Q ss_pred HHHHHHHHhCCCCE--EEEECCCCCCCHHHH--------HHHHHHHHHHHhCCcEEEEEccChhHHHhhC
Q psy7365 438 KLSTAIALLGNTPL--IFLDEPTSGMDPGAR--------RFLWTCIERAVSEGRCVILTSHNMEECEALC 497 (601)
Q Consensus 438 Rl~lA~AL~~~P~l--LlLDEPTsGLD~~~~--------~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~ 497 (601)
|++++.++..+|++ +|+||.|+.+|...+ +.+.+...++..+|.|. ++++.+++
T Consensus 178 R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~------~~~a~r~~ 241 (261)
T 2eyu_A 178 RVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLIT------LEDAMEAS 241 (261)
T ss_dssp SEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSSC------HHHHHHHC
T ss_pred EEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCCC------HHHHHHHh
Confidence 99999999999999 999999999997642 22334333445668764 45555554
No 164
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.27 E-value=7.6e-13 Score=155.12 Aligned_cols=52 Identities=25% Similarity=0.182 Sum_probs=41.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHHH-HHHHHHhhhccccCCcEEEEEecchhHHHhcCCE
Q psy7365 277 PASTVILDEPTSGVDPYSRRSIW-ELLIKVYYASHSLSGRTVILTTHYMDEADLLGDR 333 (601)
Q Consensus 277 ~~~~liLDEPtsgLD~~~~~~l~-~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Dr 333 (601)
+|+++||||||+||||.....+. .++..+. +..|.|+|++||+++.+ .++|+
T Consensus 752 ~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~----~~~g~tvl~vTH~~el~-~l~~~ 804 (918)
T 3thx_B 752 SQSLVILDELGRGTSTHDGIAIAYATLEYFI----RDVKSLTLFVTHYPPVC-ELEKN 804 (918)
T ss_dssp TTCEEEEESTTTTSCHHHHHHHHHHHHHHHH----HTTCCEEEEECSCGGGG-GHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH----HhcCCeEEEEeCcHHHH-HHHhh
Confidence 47999999999999999888775 7777763 23589999999998765 45554
No 165
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.27 E-value=1.3e-14 Score=140.69 Aligned_cols=48 Identities=25% Similarity=0.281 Sum_probs=38.1
Q ss_pred ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHHhcccEEEEccCC
Q psy7365 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYN 137 (601)
Q Consensus 79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~Q~~ 137 (601)
+||||| ||||| .++|+|+++ ++| |.++|.++. .....++.+||++|+.
T Consensus 7 ~G~nG~--GKTTl------l~~l~g~~~-~~G-i~~~g~~~~-~~~~~~~~ig~~~~~~ 54 (189)
T 2i3b_A 7 TGPPGV--GKTTL------IHKASEVLK-SSG-VPVDGFYTE-EVRQGGRRIGFDVVTL 54 (189)
T ss_dssp ESCCSS--CHHHH------HHHHHHHHH-HTT-CCCEEEECC-EEETTSSEEEEEEEET
T ss_pred ECCCCC--hHHHH------HHHHHhhcc-cCC-EEEcCEecc-hhHhhhceEEEEEEec
Confidence 899999 56654 569999999 999 999998773 2234577899999985
No 166
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.25 E-value=3.5e-12 Score=135.32 Aligned_cols=61 Identities=18% Similarity=0.266 Sum_probs=52.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcc
Q psy7365 277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV 349 (601)
Q Consensus 277 ~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~ 349 (601)
.|++|||||||++||+..+..+++.+.++ +.|+|++|| ++. .||++++|.+|++...+++.
T Consensus 292 ~p~iLLLDEp~s~LD~~~~~~l~~~l~~~--------~qt~i~~th-~~~---~~~~i~~l~~G~i~~~g~~~ 352 (359)
T 2o5v_A 292 EDPVLLLDDFTAELDPHRRQYLLDLAASV--------PQAIVTGTE-LAP---GAALTLRAQAGRFTPVADEE 352 (359)
T ss_dssp SCCEEEECCGGGCCCHHHHHHHHHHHHHS--------SEEEEEESS-CCT---TCSEEEEEETTEEEECCCTT
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHhc--------CcEEEEEEe-ccc---cCCEEEEEECCEEEecCCHH
Confidence 36899999999999999999999999875 269999999 444 89999999999998777543
No 167
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.24 E-value=4.2e-11 Score=127.28 Aligned_cols=55 Identities=31% Similarity=0.376 Sum_probs=48.3
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecC
Q psy7365 278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAA 339 (601)
Q Consensus 278 ~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~ 339 (601)
|+++||||||+|||+..+..+.+.|.++ . .+.+||++||+.+ +...||++++|.+
T Consensus 306 ~~~lllDEp~~~LD~~~~~~l~~~l~~~-----~-~~~~vi~~th~~~-~~~~~d~~~~l~k 360 (371)
T 3auy_A 306 VECIILDEPTVYLDENRRAKLAEIFRKV-----K-SIPQMIIITHHRE-LEDVADVIINVKK 360 (371)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHC-----C-SCSEEEEEESCGG-GGGGCSEEEEEEE
T ss_pred CCeEEEeCCCCcCCHHHHHHHHHHHHHh-----c-cCCeEEEEEChHH-HHhhCCEEEEEEe
Confidence 6899999999999999999999999875 1 3468999999986 6789999999973
No 168
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.23 E-value=3.7e-13 Score=139.65 Aligned_cols=163 Identities=12% Similarity=0.021 Sum_probs=115.5
Q ss_pred hhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCcc---------cccccccCCCCcc-cCCC
Q psy7365 324 MDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSAP---------QKSYIGYCPQFDA-LNDR 386 (601)
Q Consensus 324 l~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~~---------~~~~ig~v~Q~~~-l~~~ 386 (601)
+++...-+..+++++... .|+++.++ +..++..+.+.|..... .+..++|++|++. +++.
T Consensus 93 l~~~~~~g~vi~lvG~nG---sGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 93 LQLGFRKPAVIMIVGVNG---GGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCCCSSSCEEEEEECCTT---SCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred cccccCCCcEEEEEcCCC---CCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 344344567778887422 45554332 22344444555543211 1346999999988 8888
Q ss_pred CCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCC--EEEEECCCCCCCHH
Q psy7365 387 LTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTP--LIFLDEPTSGMDPG 464 (601)
Q Consensus 387 lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~--lLlLDEPTsGLD~~ 464 (601)
+|++|++.+... .+.. ..+++.+|+.+..++++.+|| |||++||+|++.+|+ +|+|| ||+|||+.
T Consensus 170 ~~v~e~l~~~~~-~~~d--------~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~ 236 (302)
T 3b9q_A 170 TVLSKAVKRGKE-EGYD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNML 236 (302)
T ss_dssp HHHHHHHHHHHH-TTCS--------EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGH
T ss_pred HHHHHHHHHHHH-cCCc--------chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHH
Confidence 999999987532 2211 135678888888889999999 999999999999999 99999 99999998
Q ss_pred HHHHHHHHHHHHH-hCCcEEEEEcc---------ChhHHHhhCCEEEEEeCCEE
Q psy7365 465 ARRFLWTCIERAV-SEGRCVILTSH---------NMEECEALCTKLTIMVNGQF 508 (601)
Q Consensus 465 ~~~~i~~lL~~l~-~~G~tVllsTH---------dl~e~~~l~drv~iL~~G~i 508 (601)
.+ ++++. +.|.|+|++|| .++.+..+++.|.++..|+.
T Consensus 237 ~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 237 PQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp HH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred HH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 65 24454 35899999999 56677788889999998864
No 169
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.20 E-value=4.5e-12 Score=150.53 Aligned_cols=119 Identities=13% Similarity=0.173 Sum_probs=85.3
Q ss_pred cccc-cCCCCcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCC
Q psy7365 372 SYIG-YCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTP 450 (601)
Q Consensus 372 ~~ig-~v~Q~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~ 450 (601)
.++| ||||+.. .+|+.+++ +.++|+.+...+..+++|++|++ +++|++++.+|+
T Consensus 816 aqiG~~Vpq~~~---~l~v~d~I---------------------~~rig~~d~~~~~~stf~~em~~-~a~al~la~~~s 870 (1022)
T 2o8b_B 816 AQMGCYVPAEVC---RLTPIDRV---------------------FTRLGASDRIMSGESTFFVELSE-TASILMHATAHS 870 (1022)
T ss_dssp HTTTCCEESSEE---EECCCSBE---------------------EEECC---------CHHHHHHHH-HHHHHHHCCTTC
T ss_pred hheeEEeccCcC---CCCHHHHH---------------------HHHcCCHHHHhhchhhhHHHHHH-HHHHHHhCCCCc
Confidence 3566 9999763 34555543 11234444444556788998886 999999999999
Q ss_pred EEEEECCCCCCCHHHH-HHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEE--EecCHHH
Q psy7365 451 LIFLDEPTSGMDPGAR-RFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFT--CLGSATH 516 (601)
Q Consensus 451 lLlLDEPTsGLD~~~~-~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv--~~G~~~~ 516 (601)
++||||||+|+|+... ..+|++|+.+.++ |.++|++||+++++..+||++.++ +|++. ..|++++
T Consensus 871 LlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 871 LVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVENECED 939 (1022)
T ss_dssp EEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC-------
T ss_pred EEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEecCccc
Confidence 9999999999999984 5589999999876 999999999999999999999887 58887 4566554
No 170
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.20 E-value=2.6e-13 Score=143.49 Aligned_cols=66 Identities=15% Similarity=0.075 Sum_probs=36.4
Q ss_pred CcEEEEecCCCCCCHHH------------HHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccc
Q psy7365 278 ASTVILDEPTSGVDPYS------------RRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCC 345 (601)
Q Consensus 278 ~~~liLDEPtsgLD~~~------------~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~ 345 (601)
|+++|+||||+++|+.. ...+...|.++. +..|+|||+++|.........+.......|++...
T Consensus 232 ~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la----~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~ 307 (349)
T 1pzn_A 232 VKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLA----NLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAH 307 (349)
T ss_dssp EEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHH----HHTTCEEEEEEECC---------------CCCCCT
T ss_pred CCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHH----HHcCcEEEEEcccccccccccCCccccCCcceEee
Confidence 68999999999999852 234444455442 23589999999998755443333445556666655
Q ss_pred cC
Q psy7365 346 GS 347 (601)
Q Consensus 346 G~ 347 (601)
+.
T Consensus 308 ~~ 309 (349)
T 1pzn_A 308 SA 309 (349)
T ss_dssp TC
T ss_pred cC
Confidence 43
No 171
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.17 E-value=3.3e-13 Score=137.77 Aligned_cols=117 Identities=11% Similarity=0.103 Sum_probs=78.8
Q ss_pred cccccCCcccccccccCCCCcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHH
Q psy7365 361 LSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLS 440 (601)
Q Consensus 361 igld~~~~~~~~~ig~v~Q~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~ 440 (601)
.+.+......++.+||++|++.+++.+||.|++.|.....+.. ..+.+.+.++ ..+.++.+.+||||||||++
T Consensus 36 ~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~---~~~~i~~~~~----~~~~~~~~~~LS~G~~qrv~ 108 (270)
T 3sop_A 36 REEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNEN---CWEPIEKYIN----EQYEKFLKEEVNIARKKRIP 108 (270)
T ss_dssp ----CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTT---CSHHHHHHHH----HHHHHHHHHHSCTTCCSSCC
T ss_pred CCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHH---HHHHHHHHHH----HHHHhhhHHhcCcccchhhh
Confidence 3333333334577999999999999999999998765433211 1122333333 34567788899999999999
Q ss_pred HHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhH
Q psy7365 441 TAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEE 492 (601)
Q Consensus 441 lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e 492 (601)
+|||++. +++|||||.|||+.. .++++.+.+. .+||++.|..+.
T Consensus 109 iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~-~~vI~Vi~K~D~ 152 (270)
T 3sop_A 109 DTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV-VNIIPVIAKADT 152 (270)
T ss_dssp CCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT-SEEEEEETTGGG
T ss_pred hheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc-CcEEEEEecccc
Confidence 9999876 999999999999987 4556666655 888888887653
No 172
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.17 E-value=1.4e-12 Score=151.37 Aligned_cols=62 Identities=23% Similarity=0.364 Sum_probs=48.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHH-HHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccc
Q psy7365 277 PASTVILDEPTSGVDPYSRRSI-WELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQ 343 (601)
Q Consensus 277 ~~~~liLDEPtsgLD~~~~~~l-~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv 343 (601)
+|+++|||||++|+|+.....+ ++++..+. +..|.++|++||+.+.. .+||++..+.+|++.
T Consensus 686 ~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~----~~~g~~vl~~TH~~el~-~l~d~~~~v~n~~~~ 748 (800)
T 1wb9_A 686 EYSLVLMDEIGRGTSTYDGLSLAWACAENLA----NKIKALTLFATHYFELT-QLPEKMEGVANVHLD 748 (800)
T ss_dssp TTEEEEEESCCCCSSSSHHHHHHHHHHHHHH----HTTCCEEEEECSCGGGG-GHHHHSTTEEEEEEE
T ss_pred CCCEEEEECCCCCCChhHHHHHHHHHHHHHH----hccCCeEEEEeCCHHHH-HHhhhhhceEEEEEE
Confidence 4799999999999999877665 78888773 22489999999998765 488887666666554
No 173
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.16 E-value=5.4e-11 Score=128.78 Aligned_cols=57 Identities=14% Similarity=0.088 Sum_probs=48.8
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecC
Q psy7365 277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAA 339 (601)
Q Consensus 277 ~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~ 339 (601)
+|+++||||||++||+..+..+.+.|.++ ...|.++|++||+.. ....||+++.+..
T Consensus 355 ~~~~lllDEp~~~LD~~~~~~l~~~l~~~-----~~~~~~~ii~th~~~-~~~~~d~~~~~~~ 411 (430)
T 1w1w_A 355 PSPFFVLDEVDAALDITNVQRIAAYIRRH-----RNPDLQFIVISLKNT-MFEKSDALVGVYR 411 (430)
T ss_dssp CCSEEEESSTTTTCCHHHHHHHHHHHHHH-----CBTTBEEEEECSCHH-HHTTCSEEEEEEE
T ss_pred CCCEEEeCCCcccCCHHHHHHHHHHHHHH-----hcCCCEEEEEECCHH-HHHhCCEEEEEEE
Confidence 46899999999999999999999999886 234789999999965 4568999999853
No 174
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.15 E-value=9.1e-13 Score=128.58 Aligned_cols=60 Identities=18% Similarity=0.155 Sum_probs=48.7
Q ss_pred CCc--EEEEecCCCCC--CHHHHHHHHHHHHHHhhhccccCCcEEEEEecch--------hHHHhcCCEEEEecCC
Q psy7365 277 PAS--TVILDEPTSGV--DPYSRRSIWELLIKVYYASHSLSGRTVILTTHYM--------DEADLLGDRIAIIAAG 340 (601)
Q Consensus 277 ~~~--~liLDEPtsgL--D~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl--------~~~~~l~Drv~vL~~G 340 (601)
.|+ ++|+||||+++ |+..+..+++.|+++. +..|.|||+++|+. ..+..+||++++|...
T Consensus 121 ~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~----~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 121 GYGKARLVIDSVSALFLDKPAMARKISYYLKRVL----NKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp CSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHH----HHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred CCCceEEEEECchHhhcCCHHHHHHHHHHHHHHH----HhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 368 99999999887 9988888999988873 23589999999999 5588899999999754
No 175
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.14 E-value=3.6e-12 Score=135.15 Aligned_cols=163 Identities=12% Similarity=0.032 Sum_probs=116.5
Q ss_pred hhHHHhcCCEEEEecCCccccccCcccc-------ccccccccccccccCCcc---------cccccccCCCCcc-cCCC
Q psy7365 324 MDEADLLGDRIAIIAAGKLQCCGSSVFL-------KNSFARGYYLSLDMKSAP---------QKSYIGYCPQFDA-LNDR 386 (601)
Q Consensus 324 l~~~~~l~Drv~vL~~GkIv~~G~~~lL-------k~~~g~g~~igld~~~~~---------~~~~ig~v~Q~~~-l~~~ 386 (601)
+++...-+..+++++... .|+++.+ ++..++..+.+.|..... .+..++|++|++. +++.
T Consensus 150 l~l~~~~g~vi~lvG~nG---sGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~ 226 (359)
T 2og2_A 150 LQLGFRKPAVIMIVGVNG---GGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 226 (359)
T ss_dssp CCCCSSSSEEEEEECCTT---SCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHH
T ss_pred cceecCCCeEEEEEcCCC---ChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChh
Confidence 333344567778886422 4555433 222344444555543211 1356999999988 8888
Q ss_pred CCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCC--EEEEECCCCCCCHH
Q psy7365 387 LTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTP--LIFLDEPTSGMDPG 464 (601)
Q Consensus 387 lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~--lLlLDEPTsGLD~~ 464 (601)
+++++++.+... .+.. ..+++.+|+.+..++++.+|| |||++||+|++.+|+ +|+|| ||+|+|+.
T Consensus 227 ~tv~e~l~~~~~-~~~d--------~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~ 293 (359)
T 2og2_A 227 TVLSKAVKRGKE-EGYD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNML 293 (359)
T ss_dssp HHHHHHHHHHHH-TTCS--------EEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGH
T ss_pred hhHHHHHHHHHh-CCCH--------HHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHH
Confidence 999999987532 2211 135678898888888999999 999999999999999 99999 99999998
Q ss_pred HHHHHHHHHHHHHh-CCcEEEEEcc---------ChhHHHhhCCEEEEEeCCEE
Q psy7365 465 ARRFLWTCIERAVS-EGRCVILTSH---------NMEECEALCTKLTIMVNGQF 508 (601)
Q Consensus 465 ~~~~i~~lL~~l~~-~G~tVllsTH---------dl~e~~~l~drv~iL~~G~i 508 (601)
++. +++.+ .|.|+|++|| .+..+..++..|.++..|+.
T Consensus 294 ~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 294 PQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp HHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred HHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 653 34443 4899999999 45677778889999888863
No 176
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.14 E-value=2e-12 Score=136.97 Aligned_cols=123 Identities=16% Similarity=0.132 Sum_probs=89.8
Q ss_pred eeecceEEeec-----ccCCCCCCCccccchhhhHHHhccCCCC-CCeeEEEEc-cccCCCchHHhcccEEEEccCCCCC
Q psy7365 68 GISDTSLEEQP-----LGPSGITLGLHTLGLEFVSRSMLMGMLP-VSSGTAKIY-DHDIRTDMTTIRRSLGVCPQYNALF 140 (601)
Q Consensus 68 ~~~~~~~~~~~-----~g~~g~~~g~~~~g~~~~~~~~l~Gl~~-~~~G~v~~~-g~~~~~~~~~~~~~ig~v~Q~~~~~ 140 (601)
+++++++.+.. +||||+ ||||| .++|+|+.+ |++|+|.++ |.+.. ...+..++++||++.++
T Consensus 205 gl~~L~~~~~G~~~~lvG~sG~--GKSTL------ln~L~g~~~~~~~G~I~~~~G~g~~---tt~~~~i~~v~q~~~l~ 273 (358)
T 2rcn_A 205 GLKPLEEALTGRISIFAGQSGV--GKSSL------LNALLGLQNEILTNDVSNVSGLGQH---TTTAARLYHFPHGGDVI 273 (358)
T ss_dssp THHHHHHHHTTSEEEEECCTTS--SHHHH------HHHHHCCSSCCCCC----------------CCCEEEECTTSCEEE
T ss_pred CHHHHHHhcCCCEEEEECCCCc--cHHHH------HHHHhccccccccCCccccCCCCcc---ceEEEEEEEECCCCEec
Confidence 45666654322 999999 56654 579999999 999999987 76542 23456799999999899
Q ss_pred CCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchhhH
Q psy7365 141 DKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAW 207 (601)
Q Consensus 141 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~~~ 207 (601)
+.++++|+ . +.++++++...++.++++.+|+.++.+..+.+|| ||+||+++|++++....+
T Consensus 274 dtpgv~e~---~--l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gli~~~R~ 334 (358)
T 2rcn_A 274 DSPGVREF---G--LWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGAIAETRF 334 (358)
T ss_dssp ECHHHHTC---C--CCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTSSCHHHH
T ss_pred CcccHHHh---h--hcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcCCCHHHH
Confidence 89999984 2 3456777777888899999999999999999999 999999998887766543
No 177
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.12 E-value=6.1e-13 Score=128.32 Aligned_cols=28 Identities=11% Similarity=0.019 Sum_probs=25.0
Q ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHHh
Q psy7365 279 STVILDEPTSGVDPYSRRSIWELLIKVY 306 (601)
Q Consensus 279 ~~liLDEPtsgLD~~~~~~l~~~l~~l~ 306 (601)
..+++|||||++|+.....+++.|.++.
T Consensus 170 ~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 170 NGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp CSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 5678999999999999999999998863
No 178
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.09 E-value=4.7e-11 Score=140.37 Aligned_cols=100 Identities=25% Similarity=0.298 Sum_probs=77.6
Q ss_pred HHHHcCCCcccccccCcCChHHHHHHHHHHHH--hCCCCEEEEECCCCCCCHHHHHHH-HHHHHHHHhC-CcEEEEEccC
Q psy7365 414 SLNKFALGHYSDREVRTLSGGNKRKLSTAIAL--LGNTPLIFLDEPTSGMDPGARRFL-WTCIERAVSE-GRCVILTSHN 489 (601)
Q Consensus 414 lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL--~~~P~lLlLDEPTsGLD~~~~~~i-~~lL~~l~~~-G~tVllsTHd 489 (601)
++.++|+. +.....+|+|++++..+|+++ +.+|+++||||||+|+|+..+..+ |.+++.+.++ |+++|++||+
T Consensus 708 i~~~ig~~---d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~ 784 (934)
T 3thx_A 708 ILARVGAG---DSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHF 784 (934)
T ss_dssp EEEECC------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESC
T ss_pred HHHhcCch---hhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCc
Confidence 34444543 334556888888888888888 999999999999999999998888 8888888764 9999999999
Q ss_pred hhHHHhhCCEEEEEeCCEEEEecCHHHH
Q psy7365 490 MEECEALCTKLTIMVNGQFTCLGSATHL 517 (601)
Q Consensus 490 l~e~~~l~drv~iL~~G~iv~~G~~~~L 517 (601)
.+.+ .+||++..+.+|++.+.++++++
T Consensus 785 ~el~-~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 785 HELT-ALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp GGGG-GGGGTCTTEEEEEEEEEEETTEE
T ss_pred HHHH-HHhcccceeEeeEEEEEecCCcE
Confidence 6654 68999999999999998887654
No 179
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.09 E-value=8.1e-14 Score=145.39 Aligned_cols=109 Identities=12% Similarity=0.000 Sum_probs=69.9
Q ss_pred ccCCCCCCCccccchhhhHHHhccCCC--------CCCeeEEEEccccCCCc----------------hHHhcccEEEE-
Q psy7365 79 LGPSGITLGLHTLGLEFVSRSMLMGML--------PVSSGTAKIYDHDIRTD----------------MTTIRRSLGVC- 133 (601)
Q Consensus 79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~--------~~~~G~v~~~g~~~~~~----------------~~~~~~~ig~v- 133 (601)
+||||| ||||| .++|.|+. .|+.|+|.++|.++... ....++.++++
T Consensus 10 ~G~~Ga--GKTTl------l~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~ 81 (318)
T 1nij_A 10 TGFLGA--GKTTL------LRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLL 81 (318)
T ss_dssp EESSSS--SCHHH------HHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHH
T ss_pred EecCCC--CHHHH------HHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHH
Confidence 899999 56655 56888886 78999999999987532 12334568877
Q ss_pred --ccCCCCCCCCCHHHHHHHhH--hh---c-CCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhh
Q psy7365 134 --PQYNALFDKLTVEEHMWFYS--QL---K-QVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLD 196 (601)
Q Consensus 134 --~Q~~~~~~~~tv~e~l~~~~--~~---~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~ 196 (601)
+|++.++++.++.|++.++. .. + ..+......++..++..+++.+..++.. +||+||+||+.
T Consensus 82 ~~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~-~ls~g~~Q~~~ 151 (318)
T 1nij_A 82 DNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN-QFTIAQSQVGY 151 (318)
T ss_dssp HHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH-HCHHHHHHHHT
T ss_pred hHHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh-hchHHHHHHHh
Confidence 78887777888888775431 10 0 0010011112233445566666555444 89999999975
No 180
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.09 E-value=1.5e-13 Score=142.63 Aligned_cols=151 Identities=13% Similarity=0.105 Sum_probs=106.1
Q ss_pred cchhHHHhcCCEEEEecCCccccccCccccccccccccccccccCCcccccccccCCCCcccCCCCCHHH-HHHHhHHhc
Q psy7365 322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPRE-HLEFYSRVR 400 (601)
Q Consensus 322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk~~~g~g~~igld~~~~~~~~~ig~v~Q~~~l~~~lTv~E-~L~~~~~~~ 400 (601)
+++++-...++.+++++.-. .|++++++--.+ .. . -+-++|++|++.+|. .|+++ |+.+..
T Consensus 117 ~~vsl~i~~Ge~vaIvGpsG---sGKSTLl~lL~g--l~---~------G~I~~~v~q~~~lf~-~ti~~~ni~~~~--- 178 (305)
T 2v9p_A 117 KLWLKGIPKKNCLAFIGPPN---TGKSMLCNSLIH--FL---G------GSVLSFANHKSHFWL-ASLADTRAALVD--- 178 (305)
T ss_dssp HHHHHTCTTCSEEEEECSSS---SSHHHHHHHHHH--HH---T------CEEECGGGTTSGGGG-GGGTTCSCEEEE---
T ss_pred ccceEEecCCCEEEEECCCC---CcHHHHHHHHhh--hc---C------ceEEEEecCcccccc-ccHHHHhhccCc---
Confidence 77888888899999997522 566655442111 01 0 112578899987776 47776 776531
Q ss_pred CCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCC
Q psy7365 401 NLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEG 480 (601)
Q Consensus 401 g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G 480 (601)
... ..+.+.++.+ |.+..+ ...|||||||| |||++.+|+||| |++||+.++..+..
T Consensus 179 ~~~-----~~~~~~i~~~-L~~gld--g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~--------- 234 (305)
T 2v9p_A 179 DAT-----HACWRYFDTY-LRNALD--GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY--------- 234 (305)
T ss_dssp EEC-----HHHHHHHHHT-TTGGGG--TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG---------
T ss_pred ccc-----HHHHHHHHHH-hHccCC--ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH---------
Confidence 111 1345556654 444444 77999999999 999999999999 99999999888862
Q ss_pred cEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHHh
Q psy7365 481 RCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKY 521 (601)
Q Consensus 481 ~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~~ 521 (601)
.||+++.+ ..|||| +|++|+++..|+++++...|
T Consensus 235 -----ltH~~~~~-~~aD~i-vl~~G~iv~~g~~~el~~~y 268 (305)
T 2v9p_A 235 -----LHSRVQTF-RFEQPC-TDESGEQPFNITDADWKSFF 268 (305)
T ss_dssp -----GTTTEEEE-ECCCCC-CCC---CCCCCCHHHHHHHH
T ss_pred -----HhCCHHHH-HhCCEE-EEeCCEEEEeCCHHHHHHHH
Confidence 19998875 589999 99999999999999994433
No 181
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.08 E-value=3.3e-14 Score=136.01 Aligned_cols=171 Identities=12% Similarity=0.051 Sum_probs=99.9
Q ss_pred cccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcC
Q psy7365 78 PLGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQ 157 (601)
Q Consensus 78 ~~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~ 157 (601)
-+||||| |||| ++ ++|++ |++|.+.++|.++.. ....|+++|....++..++.+++.+.+..+.
T Consensus 7 l~G~~Ga--GKST-----l~-~~L~~---~~~g~~~i~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 70 (189)
T 2bdt_A 7 ITGPAGV--GKST-----TC-KRLAA---QLDNSAYIEGDIINH-----MVVGGYRPPWESDELLALTWKNITDLTVNFL 70 (189)
T ss_dssp EECSTTS--SHHH-----HH-HHHHH---HSSSEEEEEHHHHHT-----TCCTTCCCGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCC--cHHH-----HH-HHHhc---ccCCeEEEcccchhh-----hhccccccCccchhHHHHHHHHHHHHHHHHH
Confidence 3899999 4555 44 57765 778999999876532 1235777877655556788888876543321
Q ss_pred CChHHHHHHHHHHHHHcCCCcccCCccccC--ChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchh
Q psy7365 158 VPKDLAQLEISNMIGDLGIPHKRTSLANTL--SGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDY 235 (601)
Q Consensus 158 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~L--SgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~ 235 (601)
... ...+++.+. .....+...++ |+||+|++.++... -++..
T Consensus 71 ~~~------~~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~-~~~e~---------------------------- 114 (189)
T 2bdt_A 71 LAQ------NDVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILW-TNREE---------------------------- 114 (189)
T ss_dssp HTT------CEEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEE-CCHHH----------------------------
T ss_pred hcC------CcEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEe-CCHHH----------------------------
Confidence 000 000111111 11111222344 88999887653211 11100
Q ss_pred hHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCc
Q psy7365 236 AIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGR 315 (601)
Q Consensus 236 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~ 315 (601)
++.+ |+...+|+ ++|+..+.. ++.+..++ ..+.
T Consensus 115 ---l~~R-----------------------------------~~~r~~d~---~ld~~~~~~-~~~~~~~~-----~~~~ 147 (189)
T 2bdt_A 115 ---LLRR-----------------------------------DALRKKDE---QMGERCLEL-VEEFESKG-----IDER 147 (189)
T ss_dssp ---HHHH-----------------------------------TTTSCC-------CGGGGHH-HHHHHHTT-----CCTT
T ss_pred ---HHHH-----------------------------------HHhccccc---cCCHHHHHH-HHHHhhcC-----CCcc
Confidence 1111 23334563 899988888 88888762 3478
Q ss_pred EEEEEecc-hhHHHhcCCEEEEecCCccccccCcc
Q psy7365 316 TVILTTHY-MDEADLLGDRIAIIAAGKLQCCGSSV 349 (601)
Q Consensus 316 TVI~~tHd-l~~~~~l~Drv~vL~~GkIv~~G~~~ 349 (601)
++|.+||. ++++.+.||+|+ .+|+++..|++.
T Consensus 148 ~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~ 180 (189)
T 2bdt_A 148 YFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGD 180 (189)
T ss_dssp SEEECSSSCGGGHHHHHHHHH--HCGGGSCC----
T ss_pred EEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCC
Confidence 99999999 999999999998 999998887653
No 182
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.08 E-value=1.2e-12 Score=129.47 Aligned_cols=56 Identities=16% Similarity=0.144 Sum_probs=43.6
Q ss_pred ccCCCCCCCccccchhhhHHHhccCCCCC--CeeEEEEccccCCCchHHhcccEEEEccCCCCCCCCCH
Q psy7365 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPV--SSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTV 145 (601)
Q Consensus 79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~--~~G~v~~~g~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv 145 (601)
+||||| ||||| .++|+|+++| .+|.|.+.+++... ..+.+++|+||++..|+.+++
T Consensus 22 ~GpsGs--GKSTL------lk~L~g~~~p~~~~g~v~~ttr~~~~---~e~~gi~y~fq~~~~f~~~~~ 79 (219)
T 1s96_A 22 SAPSGA--GKSSL------IQALLKTQPLYDTQVSVSHTTRQPRP---GEVHGEHYFFVNHDEFKEMIS 79 (219)
T ss_dssp ECCTTS--CHHHH------HHHHHHHSCTTTEEECCCEECSCCCT---TCCBTTTBEECCHHHHHHHHH
T ss_pred ECCCCC--CHHHH------HHHHhccCCCCceEEEEEecCCCCCc---ccccCceEEECCHHHHHHHHh
Confidence 899999 56654 5799999996 79999999887643 235679999999877766655
No 183
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.07 E-value=6.5e-13 Score=132.76 Aligned_cols=65 Identities=20% Similarity=0.172 Sum_probs=49.0
Q ss_pred cccCCCCCCCccccchhhhHHHhcc---CCCCCCeeEEEEccccCCCchHHhcccEEEEccCCCCCCCCCHHHHHHHhH
Q psy7365 78 PLGPSGITLGLHTLGLEFVSRSMLM---GMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYS 153 (601)
Q Consensus 78 ~~g~~g~~~g~~~~g~~~~~~~~l~---Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~ 153 (601)
-+||||| ||||+ + ++|+ |+..|++|+|.++|.+... .....++.++|++.+++..++.+++.+..
T Consensus 32 l~G~~Gs--GKSTl-----~-k~La~~lg~~~~~~G~i~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~v~~~l~~~l 99 (246)
T 2bbw_A 32 ILGPPGS--GKGTV-----C-QRIAQNFGLQHLSSGHFLRENIKAST---EVGEMAKQYIEKSLLVPDHVITRLMMSEL 99 (246)
T ss_dssp EECCTTS--SHHHH-----H-HHHHHHHCCCCEEHHHHHHHHHHTTC---HHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred EECCCCC--CHHHH-----H-HHHHHHhCCeEecHHHHHHHHHhcCC---hHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3999999 56554 4 6889 9999999999888765422 12334566788888888899999998743
No 184
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.06 E-value=6.2e-11 Score=120.66 Aligned_cols=146 Identities=14% Similarity=0.118 Sum_probs=86.9
Q ss_pred ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCC
Q psy7365 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV 158 (601)
Q Consensus 79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~ 158 (601)
.||||+ ||||| ++ .++|.+. .|.+ +.|.++.. ...+.|+..+.. . +.+.-.+...+.
T Consensus 36 ~G~~Gs--GKTtl-----~~-~l~~~~~--~g~~-~~g~~~~~-----~~~v~~~~~e~~------~-~~~~~r~~~~g~ 92 (279)
T 1nlf_A 36 VSPGGA--GKSML-----AL-QLAAQIA--GGPD-LLEVGELP-----TGPVIYLPAEDP------P-TAIHHRLHALGA 92 (279)
T ss_dssp EESTTS--SHHHH-----HH-HHHHHHH--TCCC-TTCCCCCC-----CCCEEEEESSSC------H-HHHHHHHHHHHT
T ss_pred EcCCCC--CHHHH-----HH-HHHHHHh--cCCC-cCCCccCC-----CccEEEEECCCC------H-HHHHHHHHHHHh
Confidence 899999 56654 44 5555443 4655 33544321 235677654432 1 122111111122
Q ss_pred ChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHH
Q psy7365 159 PKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIV 238 (601)
Q Consensus 159 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 238 (601)
..+ ..+..++++.+++.+..++.+..||+||+|++. +
T Consensus 93 ~~~--~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i~---------------------------~-------------- 129 (279)
T 1nlf_A 93 HLS--AEERQAVADGLLIQPLIGSLPNIMAPEWFDGLK---------------------------R-------------- 129 (279)
T ss_dssp TSC--HHHHHHHHHHEEECCCTTSCCCTTSHHHHHHHH---------------------------H--------------
T ss_pred hcC--hhhhhhccCceEEeecCCCCcccCCHHHHHHHH---------------------------H--------------
Confidence 111 123566788999988889999999999988752 0
Q ss_pred hhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCC--CCCHHHH---HHHHHHHHHHhhhccccC
Q psy7365 239 AINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTS--GVDPYSR---RSIWELLIKVYYASHSLS 313 (601)
Q Consensus 239 ~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPts--gLD~~~~---~~l~~~l~~l~~~~~~~~ 313 (601)
++. .|+++|+||||+ ++|+... ..+.+.|+++. +..
T Consensus 130 l~~-----------------------------------~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~----~~~ 170 (279)
T 1nlf_A 130 AAE-----------------------------------GRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIA----ADT 170 (279)
T ss_dssp HHT-----------------------------------TCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHH----HHH
T ss_pred hcC-----------------------------------CCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHH----HHc
Confidence 111 268999999999 9998544 66667776662 235
Q ss_pred CcEEEEEecchhHHHh
Q psy7365 314 GRTVILTTHYMDEADL 329 (601)
Q Consensus 314 G~TVI~~tHdl~~~~~ 329 (601)
|+|||+++|+......
T Consensus 171 g~tvi~i~H~~~~~~~ 186 (279)
T 1nlf_A 171 GCSIVFLHHASKGAAM 186 (279)
T ss_dssp CCEEEEEEEC------
T ss_pred CCEEEEEecCCCcccc
Confidence 8999999999876643
No 185
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.05 E-value=3.3e-10 Score=116.06 Aligned_cols=98 Identities=13% Similarity=0.084 Sum_probs=71.5
Q ss_pred HHHHHHHHHHcCCCcccccccCcCChHH-HHHHHHHHHHhCCCCEEEEECCCC---C---CCH-HHHHHHHHHHHHHHhC
Q psy7365 408 NTIVNESLNKFALGHYSDREVRTLSGGN-KRKLSTAIALLGNTPLIFLDEPTS---G---MDP-GARRFLWTCIERAVSE 479 (601)
Q Consensus 408 ~~~~~~lLe~~~L~~~~~~~~~~LSgGq-kQRl~lA~AL~~~P~lLlLDEPTs---G---LD~-~~~~~i~~lL~~l~~~ 479 (601)
.+.++++++..++. ....+..+|.++ +||+. |+++.++|+++|+||||+ + +|+ .....+++.|++++++
T Consensus 109 ~~~~~~~l~~~~l~--i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~ 185 (296)
T 1cr0_A 109 DQWFDELFGNDTFH--LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKS 185 (296)
T ss_dssp HHHHHHHHSSSCEE--EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCEE--EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34455555433332 233446788888 66776 999999999999999999 5 566 6778899999998765
Q ss_pred -CcEEEEEccCh--h--------------------HHHhhCCEEEEEeCCEE
Q psy7365 480 -GRCVILTSHNM--E--------------------ECEALCTKLTIMVNGQF 508 (601)
Q Consensus 480 -G~tVllsTHdl--~--------------------e~~~l~drv~iL~~G~i 508 (601)
|+|||++||+. + .++.+||+|++|++|+.
T Consensus 186 ~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 186 TGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp HCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred hCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 99999999995 5 78999999999999875
No 186
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.04 E-value=4.8e-12 Score=131.10 Aligned_cols=110 Identities=11% Similarity=0.098 Sum_probs=75.3
Q ss_pred ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEE---ccccCCCchHHhc-ccEEEEccCCCC-----CCCCCHHHHH
Q psy7365 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKI---YDHDIRTDMTTIR-RSLGVCPQYNAL-----FDKLTVEEHM 149 (601)
Q Consensus 79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~---~g~~~~~~~~~~~-~~ig~v~Q~~~~-----~~~~tv~e~l 149 (601)
+||||+ ||||| .++|+ +++|++|+|.+ +|++++......+ +.+|++||.|.+ |+++|+ ||+
T Consensus 171 ~G~sG~--GKSTL------ln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e~l 240 (302)
T 2yv5_A 171 AGPSGV--GKSSI------LSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-REV 240 (302)
T ss_dssp ECSTTS--SHHHH------HHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-GGG
T ss_pred ECCCCC--CHHHH------HHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-HHH
Confidence 999999 56554 46888 99999999999 9988765432223 368999999854 378899 888
Q ss_pred --HHh------HhhcC-CChHHHHHHHHHHHHHcCCCc-ccCCccccCChHHHhhhhch
Q psy7365 150 --WFY------SQLKQ-VPKDLAQLEISNMIGDLGIPH-KRTSLANTLSGGMQRKLDNV 198 (601)
Q Consensus 150 --~~~------~~~~~-~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG~~qr~~~~ 198 (601)
.|+ +...+ ....+...++.++++.+||.+ ..++++..|||..++++++|
T Consensus 241 ~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~ 299 (302)
T 2yv5_A 241 RNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELC 299 (302)
T ss_dssp GGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHS
T ss_pred HHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 454 12223 233344567899999999996 78999999999666666544
No 187
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.01 E-value=2.1e-11 Score=129.21 Aligned_cols=50 Identities=20% Similarity=0.146 Sum_probs=38.7
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCC
Q psy7365 278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340 (601)
Q Consensus 278 ~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~G 340 (601)
|+++++|||| |+.+...+. ++. ..|.++++++|+.+.+ ..+||++.|..|
T Consensus 197 PdvillDEp~---d~e~~~~~~----~~~-----~~G~~vl~t~H~~~~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 197 PDIILVGEMR---DLETIRLAL----TAA-----ETGHLVFGTLHTTSAA-KTIDRVVDVFPA 246 (356)
T ss_dssp CSEEEESCCC---SHHHHHHHH----HHH-----HTTCEEEEEESCSSHH-HHHHHHHHTSCH
T ss_pred cCEEecCCCC---CHHHHHHHH----HHH-----hcCCEEEEEEccChHH-HHHHHHhhhcCc
Confidence 5999999999 665544333 331 3599999999999988 789999998665
No 188
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.01 E-value=6.1e-14 Score=148.76 Aligned_cols=58 Identities=21% Similarity=0.072 Sum_probs=41.8
Q ss_pred CCcEEEEec---CC------CCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecC
Q psy7365 277 PASTVILDE---PT------SGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAA 339 (601)
Q Consensus 277 ~~~~liLDE---Pt------sgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~ 339 (601)
.|++++||| |+ .++|+..+..+.+.|.++. +..|.++++++|. ++..++++++.++++
T Consensus 277 ~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~----~~~~~~ililde~-~~~~r~~~~i~~i~~ 343 (365)
T 1lw7_A 277 PFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLL----DKYKVPYIEIESP-SYLDRYNQVKAVIEK 343 (365)
T ss_dssp CCSEEEEEECCCC-----------CCSHHHHHHHHHHHH----HGGGCCCEEEECS-SHHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHH----HHcCCCEEEeCCC-CHHHHHHHHHHHHHH
Confidence 368999999 65 5899999999999998763 2247899999975 577778888777653
No 189
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.98 E-value=6e-13 Score=144.79 Aligned_cols=124 Identities=13% Similarity=0.114 Sum_probs=98.0
Q ss_pred cccccccCCCC-cccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCC
Q psy7365 370 QKSYIGYCPQF-DALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGN 448 (601)
Q Consensus 370 ~~~~ig~v~Q~-~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~ 448 (601)
.++.++|++|+ ..+++.+++.+|+.+.+.+++... -......+ .+..||+|| ||++|| +.+
T Consensus 211 l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~-------------~~v~~~ld-~l~~lS~g~-qrvslA---l~~ 272 (438)
T 2dpy_A 211 RARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRG-------------QHVLLIMD-SLTRYAMAQ-REIALA---IGE 272 (438)
T ss_dssp HHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTT-------------CEEEEEEE-CHHHHHHHH-HHHHHH---TTC
T ss_pred cCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCC-------------CCHHHHHH-hHHHHHHHH-HHHHHH---hCC
Confidence 35679999995 556778899999887654432100 00111122 367899999 999999 889
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHh---C-Cc-----EEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365 449 TPLIFLDEPTSGMDPGARRFLWTCIERAVS---E-GR-----CVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 519 (601)
Q Consensus 449 P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~---~-G~-----tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~ 519 (601)
|++ |+|||+..+..++++++++.+ + |. ||+++|||++ +.+||++++|.+|+++.+++++++..
T Consensus 273 p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~dG~Ivl~~~~~~~~~ 344 (438)
T 2dpy_A 273 PPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAILDGHIVLSRRLAEAGH 344 (438)
T ss_dssp CCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSSEEEEECHHHHHTTC
T ss_pred Ccc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEeCcEEEEeCCHHHccC
Confidence 998 999999999999999999865 3 74 9999999999 78999999999999999999988754
No 190
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.97 E-value=5.5e-11 Score=118.86 Aligned_cols=170 Identities=9% Similarity=0.083 Sum_probs=106.1
Q ss_pred cchhHHHhcCCEEEEecCCccccccCcccccccccc-ccccccccCCcccccccccCCCCcccCCCCCHHHHHHHhHHhc
Q psy7365 322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFAR-GYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVR 400 (601)
Q Consensus 322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk~~~g~-g~~igld~~~~~~~~~ig~v~Q~~~l~~~lTv~E~L~~~~~~~ 400 (601)
+++++...-+..+++.+.- .+|++++.+.-.+. +.. .++ ..++.++|++|+. +++.+|+.+++.+....+
T Consensus 16 ~~isl~i~~g~iigI~G~~---GsGKSTl~k~L~~~lG~~-~~~----~~~~~i~~v~~d~-~~~~l~~~~~~~~~~~~~ 86 (245)
T 2jeo_A 16 ENLYFQSMRPFLIGVSGGT---ASGKSTVCEKIMELLGQN-EVE----QRQRKVVILSQDR-FYKVLTAEQKAKALKGQY 86 (245)
T ss_dssp -------CCSEEEEEECST---TSSHHHHHHHHHHHHTGG-GSC----GGGCSEEEEEGGG-GBCCCCHHHHHHHHTTCC
T ss_pred cceeccCCCCEEEEEECCC---CCCHHHHHHHHHHHhchh-ccc----ccCCceEEEeCCc-CccccCHhHhhhhhccCC
Confidence 8888888888888888642 25666554421110 111 111 2456799999984 788899999987765443
Q ss_pred CCCh--hHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh
Q psy7365 401 NLPS--VLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVS 478 (601)
Q Consensus 401 g~~~--~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~ 478 (601)
+... ....+.+.+.|+.+ .+..++++..||+||+||+.+ ++++.+|+++|||||....|.. + .++
T Consensus 87 ~~~~~~~~~~~~~~~~L~~l--~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~----l----~~~-- 153 (245)
T 2jeo_A 87 NFDHPDAFDNDLMHRTLKNI--VEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE----I----RDM-- 153 (245)
T ss_dssp CTTSGGGBCHHHHHHHHHHH--HTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH----H----HTT--
T ss_pred CCCCcccccHHHHHHHHHHH--HCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH----H----HHh--
Confidence 3321 11123345555543 455678899999999999988 5888999999999999888764 2 222
Q ss_pred CCcEEEEEccChhHH-HhhCCEEEEEeCCEEEEecCHHHHHHHh
Q psy7365 479 EGRCVILTSHNMEEC-EALCTKLTIMVNGQFTCLGSATHLKSKY 521 (601)
Q Consensus 479 ~G~tVllsTHdl~e~-~~l~drv~iL~~G~iv~~G~~~~L~~~~ 521 (601)
.+.+|+++||+...+ ..+|+++ ++|+ +++++.+++
T Consensus 154 ~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~~~ 189 (245)
T 2jeo_A 154 FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILTQY 189 (245)
T ss_dssp CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHHHH
T ss_pred cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHHHH
Confidence 378999999975444 5556555 6674 678877654
No 191
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.92 E-value=7.5e-10 Score=129.91 Aligned_cols=96 Identities=11% Similarity=0.085 Sum_probs=70.5
Q ss_pred HHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHh-CCcEEEEEccCh
Q psy7365 413 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW-TCIERAVS-EGRCVILTSHNM 490 (601)
Q Consensus 413 ~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~-~lL~~l~~-~G~tVllsTHdl 490 (601)
+++.++++.+...+..+++|+||+|++.++++ +.+|+++||||||+|+||..+..+. .+++.+.+ .|.|+|++|||+
T Consensus 718 ~i~~~ig~~d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~ 796 (918)
T 3thx_B 718 GIFTRMGAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYP 796 (918)
T ss_dssp EEEEEC----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred HHHHhCChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcH
Confidence 45666777777778889999999999999999 8999999999999999999988886 78888865 599999999998
Q ss_pred hHHHhhCCEEEE-EeCCEEEE
Q psy7365 491 EECEALCTKLTI-MVNGQFTC 510 (601)
Q Consensus 491 ~e~~~l~drv~i-L~~G~iv~ 510 (601)
+.+ .+||+.-- +.++++.+
T Consensus 797 el~-~l~~~~~~~v~n~~~~~ 816 (918)
T 3thx_B 797 PVC-ELEKNYSHQVGNYHMGF 816 (918)
T ss_dssp GGG-GHHHHTTTTEEEEEEEE
T ss_pred HHH-HHHhhcccceEEEEEEE
Confidence 766 46766532 44555544
No 192
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.91 E-value=1.1e-11 Score=129.12 Aligned_cols=125 Identities=6% Similarity=0.005 Sum_probs=90.4
Q ss_pred cccccCCCCcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCE
Q psy7365 372 SYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPL 451 (601)
Q Consensus 372 ~~ig~v~Q~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~l 451 (601)
++++|++|++.+++. |+.||+.+.. .++.+.....+.+.++|+.++ .+..+.++.+|||||+||+++|++++.+|+|
T Consensus 121 ~~v~~v~qd~~~~~~-t~~e~~~~~~-~~g~~~~~d~~~~~~~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~i 197 (312)
T 3aez_A 121 PRVDLVTTDGFLYPN-AELQRRNLMH-RKGFPESYNRRALMRFVTSVK-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDI 197 (312)
T ss_dssp CCEEEEEGGGGBCCH-HHHHHTTCTT-CTTSGGGBCHHHHHHHHHHHH-TTCSCEEEEEEETTTTEEEEEEEEEECSCSE
T ss_pred CeEEEEecCccCCcc-cHHHHHHHHH-hcCCChHHHHHHHHHHHHHhC-CCcccCCcccCChhhhhhhhhHHHhccCCCE
Confidence 568999999888887 9999986532 235444444566788899888 6666788899999999999999999999999
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHH-HhhCCEEEEEeCCE
Q psy7365 452 IFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC-EALCTKLTIMVNGQ 507 (601)
Q Consensus 452 LlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~-~~l~drv~iL~~G~ 507 (601)
||||||+..+|+.. .. +.++ -+. .|+++|+.+.. +++++|.+.+.+|+
T Consensus 198 lIlDep~~~~d~~~-~~----l~~~--~D~-~I~V~a~~~~~~~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 198 LILEGLNVLQTGPT-LM----VSDL--FDF-SLYVDARIEDIEQWYVSRFLAMRTTA 246 (312)
T ss_dssp EEEECTTTTCCCSS-CC----GGGG--CSE-EEEEEECHHHHHHHHHHHHHHHTTTG
T ss_pred EEECCccccCCcch-HH----HHHh--cCc-EEEEECCHHHHHHHHHHHHHHHHhcc
Confidence 99999999998621 11 1111 133 46667777654 44566665555543
No 193
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.86 E-value=3.7e-10 Score=119.73 Aligned_cols=61 Identities=20% Similarity=0.095 Sum_probs=44.4
Q ss_pred eecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHHhcccEEEEc-cCCC
Q psy7365 69 ISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCP-QYNA 138 (601)
Q Consensus 69 ~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~-Q~~~ 138 (601)
++++||.+.+ +||||| ||||| .++|+|+++|++|.|+++|..-. .....++.+++++ |++.
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGs--GKSTl------l~~l~~~~~~~~g~I~ie~~~e~-~~~~~~~~v~~v~~q~~~ 232 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGS--GKTTL------MKALMQEIPFDQRLITIEDVPEL-FLPDHPNHVHLFYPSEAK 232 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSS--CHHHH------HHHHHTTSCTTSCEEEEESSSCC-CCTTCSSEEEEECC----
T ss_pred HHHHHHHHhcCCEEEEECCCCC--CHHHH------HHHHHhcCCCCceEEEECCcccc-CccccCCEEEEeecCccc
Confidence 3999999987 999999 56554 57999999999999999985321 1222467899999 7654
No 194
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.86 E-value=1.7e-12 Score=136.63 Aligned_cols=82 Identities=11% Similarity=0.043 Sum_probs=64.2
Q ss_pred hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc
Q psy7365 49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD 122 (601)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~ 122 (601)
++.++++++.|+. ..+++++||++.+ +||||+ ||||| .++|+|+++|++|+|.+.|.++.+.
T Consensus 29 ~ie~~~~~~~~~~----~~~l~~i~~~~~~g~~v~i~G~~Ga--GKSTL------l~~l~g~~~~~~g~v~i~~~d~~~~ 96 (337)
T 2qm8_A 29 LAESRRADHRAAV----RDLIDAVLPQTGRAIRVGITGVPGV--GKSTT------IDALGSLLTAAGHKVAVLAVDPSST 96 (337)
T ss_dssp HHTCSSHHHHHHH----HHHHHHHGGGCCCSEEEEEECCTTS--CHHHH------HHHHHHHHHHTTCCEEEEEECGGGG
T ss_pred HHeeCCcccccCh----HHHHHhCCcccCCCeEEEEECCCCC--CHHHH------HHHHHHhhhhCCCEEEEEEEcCccc
Confidence 4567888888753 4589999998876 999999 56654 5699999999999999999887432
Q ss_pred h-----HHhcccEEEEccCCCCCCC
Q psy7365 123 M-----TTIRRSLGVCPQYNALFDK 142 (601)
Q Consensus 123 ~-----~~~~~~ig~v~Q~~~~~~~ 142 (601)
. ...+.++|++||++.+|..
T Consensus 97 ~~~~~~~~~~~~i~~v~q~~~~~~~ 121 (337)
T 2qm8_A 97 RTGGSILGDKTRMARLAIDRNAFIR 121 (337)
T ss_dssp SSCCCSSCCGGGSTTGGGCTTEEEE
T ss_pred ccccchHHHhhhheeeccCcccccc
Confidence 1 2346679999999988754
No 195
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.85 E-value=4.6e-11 Score=123.52 Aligned_cols=99 Identities=12% Similarity=0.155 Sum_probs=67.0
Q ss_pred ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEE---ccccCCCchHHhc-ccEEEEccCCC----------------
Q psy7365 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKI---YDHDIRTDMTTIR-RSLGVCPQYNA---------------- 138 (601)
Q Consensus 79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~---~g~~~~~~~~~~~-~~ig~v~Q~~~---------------- 138 (601)
+||||+ ||||| .++|+|+.+|++|+|.+ +|++++......+ +.+|++||.|.
T Consensus 175 ~G~sG~--GKSTl------l~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~~~ 246 (301)
T 1u0l_A 175 AGLSGV--GKSSL------LNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEELKH 246 (301)
T ss_dssp ECSTTS--SHHHH------HHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHHGG
T ss_pred ECCCCC--cHHHH------HHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHHHH
Confidence 999999 56654 57999999999999999 8988764322222 36899999984
Q ss_pred CCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCC-cccCCccccCCh
Q psy7365 139 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIP-HKRTSLANTLSG 189 (601)
Q Consensus 139 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSg 189 (601)
+|+++|+ ||+.|.. +.. ..+...++.++++.+||+ +..++++.+||+
T Consensus 247 l~~~~~~-~n~~~~~-~~~--~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 247 YFKEFGD-KQCFFSD-CNH--VDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp GSTTSSS-CCCSSTT-CCS--SSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHhccc-ccCcCCC-CcC--CCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 5889999 9998863 221 233456788999999996 778899999985
No 196
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.84 E-value=5e-11 Score=124.98 Aligned_cols=67 Identities=15% Similarity=0.016 Sum_probs=53.1
Q ss_pred ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCch--H-----HhcccEEEEccCCCCCCCCCHHHHHHH
Q psy7365 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDM--T-----TIRRSLGVCPQYNALFDKLTVEEHMWF 151 (601)
Q Consensus 79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~--~-----~~~~~ig~v~Q~~~~~~~~tv~e~l~~ 151 (601)
+||||| |||| ++ ++|+|+++|++|+|.+.|.++.... . ..+.++.+++|.+.++|.++|++|+.+
T Consensus 135 vG~nGa--GKTT-----ll-~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 135 VGFNGS--GKTT-----TI-AKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp ECCTTS--SHHH-----HH-HHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred ECCCCC--CHHH-----HH-HHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 999999 4554 44 6899999999999999999985421 1 123356799999999999999999987
Q ss_pred hH
Q psy7365 152 YS 153 (601)
Q Consensus 152 ~~ 153 (601)
+.
T Consensus 207 ~~ 208 (328)
T 3e70_C 207 AK 208 (328)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 197
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.84 E-value=6.8e-13 Score=130.83 Aligned_cols=168 Identities=9% Similarity=0.030 Sum_probs=103.0
Q ss_pred cchhHHHhcCCEEEEecCCccccccCccccccc---c-ccccccccccCCc----ccccccccCCCCcccCCCCCH-HHH
Q psy7365 322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS---F-ARGYYLSLDMKSA----PQKSYIGYCPQFDALNDRLTP-REH 392 (601)
Q Consensus 322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk~~---~-g~g~~igld~~~~----~~~~~ig~v~Q~~~l~~~lTv-~E~ 392 (601)
+++++...-+..+++++... .|++++++.- . +..++ +.+.... ..++.++|+||++.+|+.++. .++
T Consensus 14 ~~isl~i~~G~~~~lvGpsG---sGKSTLl~~L~g~~pG~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 89 (218)
T 1z6g_A 14 LVPRGSMNNIYPLVICGPSG---VGKGTLIKKLLNEFPNYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDF 89 (218)
T ss_dssp --------CCCCEEEECSTT---SSHHHHHHHHHHHSTTTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCE
T ss_pred cCCceecCCCCEEEEECCCC---CCHHHHHHHHHhhCCCcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhccch
Confidence 67888888889999997421 4555443211 1 22222 3332211 134679999999876654431 111
Q ss_pred H---HHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHH-----HHHHhCCCCEEEEECCCCCCCHH
Q psy7365 393 L---EFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLST-----AIALLGNTPLIFLDEPTSGMDPG 464 (601)
Q Consensus 393 L---~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~l-----A~AL~~~P~lLlLDEPTsGLD~~ 464 (601)
+ .+....++.+. ..++++++...+. ..+ .+|||||+||+++ +++++.+|++++|||||+++|..
T Consensus 90 l~~~~~~~~~~g~~~----~~i~~~l~~~~~~-il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~ 161 (218)
T 1z6g_A 90 LEYDNYANNFYGTLK----SEYDKAKEQNKIC-LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTE 161 (218)
T ss_dssp EEEEEETTEEEEEEH----HHHHHHHHTTCEE-EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCC
T ss_pred hhhhhcccccCCCcH----HHHHHHHhCCCcE-EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCC
Confidence 1 11222333332 3456667654432 122 5799999999999 88999999999999999999999
Q ss_pred HHHHHHHHHHHHHh-------CCcEEEEEccChhHHHhhCCEEE
Q psy7365 465 ARRFLWTCIERAVS-------EGRCVILTSHNMEECEALCTKLT 501 (601)
Q Consensus 465 ~~~~i~~lL~~l~~-------~G~tVllsTHdl~e~~~l~drv~ 501 (601)
+...+.+.+.++.+ .+.+.|+++||++++...+++++
T Consensus 162 ~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii 205 (218)
T 1z6g_A 162 NQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYL 205 (218)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHH
Confidence 88888888876532 45677888888888887776654
No 198
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.84 E-value=2.3e-11 Score=114.46 Aligned_cols=82 Identities=18% Similarity=0.110 Sum_probs=64.9
Q ss_pred hcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHH
Q psy7365 52 FESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTT 125 (601)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~ 125 (601)
.+++++.|++ ..+++++||++.+ +||||| ||||| .++|+|++ |++|+|.++|.++.... .
T Consensus 10 ~~~~~~~~g~----~~~l~~vsl~i~~Ge~v~L~G~nGa--GKTTL------lr~l~g~l-~~~G~V~~~g~~i~~~~-~ 75 (158)
T 1htw_A 10 DEFSMLRFGK----KFAEILLKLHTEKAIMVYLNGDLGA--GKTTL------TRGMLQGI-GHQGNVKSPTYTLVEEY-N 75 (158)
T ss_dssp SHHHHHHHHH----HHHHHHHHHCCSSCEEEEEECSTTS--SHHHH------HHHHHHHT-TCCSCCCCCTTTCEEEE-E
T ss_pred CHHHHHHHHH----HHHHhccccccCCCCEEEEECCCCC--CHHHH------HHHHHHhC-CCCCeEEECCEeeeeec-c
Confidence 4567777753 4589999999987 999999 56655 57999999 99999999999874321 1
Q ss_pred hcccEEEEccCCCCCCCCCHHHHHHH
Q psy7365 126 IRRSLGVCPQYNALFDKLTVEEHMWF 151 (601)
Q Consensus 126 ~~~~ig~v~Q~~~~~~~~tv~e~l~~ 151 (601)
.+ + ++||++.+| .+||.||+.+
T Consensus 76 ~~-~--~~~q~~~l~-~ltv~e~l~~ 97 (158)
T 1htw_A 76 IA-G--KMIYHFDLY-RLADPEELEF 97 (158)
T ss_dssp ET-T--EEEEEEECT-TCSCTTHHHH
T ss_pred CC-C--cceeccccc-cCCcHHHHHH
Confidence 12 2 799999999 9999999965
No 199
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.84 E-value=6.3e-11 Score=131.20 Aligned_cols=46 Identities=20% Similarity=0.185 Sum_probs=38.2
Q ss_pred ccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEcccc
Q psy7365 65 DSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHD 118 (601)
Q Consensus 65 ~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~ 118 (601)
+..+++++++.+.. +||||| |||| + .++|+|+++|++|.|+++|.+
T Consensus 246 ~~~~l~~l~~~v~~g~~i~I~GptGS--GKTT-----l-L~aL~~~i~~~~giitied~~ 297 (511)
T 2oap_1 246 PSGVLAYLWLAIEHKFSAIVVGETAS--GKTT-----T-LNAIMMFIPPDAKVVSIEDTR 297 (511)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEESTTS--SHHH-----H-HHHHGGGSCTTCCEEEEESSC
T ss_pred CHHHHHHHHHHHhCCCEEEEECCCCC--CHHH-----H-HHHHHhhCCCCCCEEEEcCcc
Confidence 45678899998866 999999 4554 4 469999999999999999875
No 200
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.83 E-value=3.1e-10 Score=111.74 Aligned_cols=61 Identities=16% Similarity=0.210 Sum_probs=37.2
Q ss_pred CCcEEEEecCCCCCCHH-------H-----HHHHHHHHHHHhhhccccCCcEEEEEecchhHHHh---------------
Q psy7365 277 PASTVILDEPTSGVDPY-------S-----RRSIWELLIKVYYASHSLSGRTVILTTHYMDEADL--------------- 329 (601)
Q Consensus 277 ~~~~liLDEPtsgLD~~-------~-----~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~--------------- 329 (601)
.|+++|+|||++.+|+. . ...++..|.++. +..|.|||+++|.......
T Consensus 119 ~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~----~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~ 194 (243)
T 1n0w_A 119 RYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLA----DEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGN 194 (243)
T ss_dssp CEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHH----HHHCCEEEEEC-----------------------
T ss_pred CceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHH----HHcCCEEEEEeeeeecCCCccccCCCcccCCccC
Confidence 36899999999999985 3 233444444442 2348999999997765443
Q ss_pred ----cCCEEEEecCCc
Q psy7365 330 ----LGDRIAIIAAGK 341 (601)
Q Consensus 330 ----l~Drv~vL~~Gk 341 (601)
+||++++|..|+
T Consensus 195 ~~~~~~d~vi~l~~~~ 210 (243)
T 1n0w_A 195 IIAHASTTRLYLRKGR 210 (243)
T ss_dssp --CCTTCEEEEEEECS
T ss_pred hhhhcCcEEEEEEEcC
Confidence 789999998653
No 201
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.83 E-value=1.8e-09 Score=106.65 Aligned_cols=60 Identities=17% Similarity=0.073 Sum_probs=51.7
Q ss_pred hCCCCEEEEECCCCCCC-----HHHHHHHHHHHHHHHhCCcEEEEEccChhHH---------HhhC-CEEEEEeC
Q psy7365 446 LGNTPLIFLDEPTSGMD-----PGARRFLWTCIERAVSEGRCVILTSHNMEEC---------EALC-TKLTIMVN 505 (601)
Q Consensus 446 ~~~P~lLlLDEPTsGLD-----~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~---------~~l~-drv~iL~~ 505 (601)
..+|++++|||||+++| +..++.++++++.++++|+|||++||+++++ +.+| |+|++|++
T Consensus 133 ~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred hhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 46999999999999998 7777779999999988899999999999999 7888 99999974
No 202
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.83 E-value=3.4e-09 Score=103.05 Aligned_cols=78 Identities=10% Similarity=0.002 Sum_probs=66.5
Q ss_pred cCChHHHHHHHHHHHHhCCCC--EEEEECCCCCC--CHHHHHHHHHHHHHHHh-CCcEEEEEccCh--------hHHHhh
Q psy7365 430 TLSGGNKRKLSTAIALLGNTP--LIFLDEPTSGM--DPGARRFLWTCIERAVS-EGRCVILTSHNM--------EECEAL 496 (601)
Q Consensus 430 ~LSgGqkQRl~lA~AL~~~P~--lLlLDEPTsGL--D~~~~~~i~~lL~~l~~-~G~tVllsTHdl--------~e~~~l 496 (601)
..|.++.++...+.+..++|+ ++++||||+++ |+..++++++.|+++++ .|.|||++||+. ..++.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~ 182 (235)
T 2w0m_A 103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHV 182 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHH
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchhee
Confidence 348899988888888888999 99999999887 99999999999999864 599999999999 569999
Q ss_pred CCEEEEEeCCE
Q psy7365 497 CTKLTIMVNGQ 507 (601)
Q Consensus 497 ~drv~iL~~G~ 507 (601)
||+|++|++..
T Consensus 183 ~d~vi~l~~~~ 193 (235)
T 2w0m_A 183 ADGIIRFRRMI 193 (235)
T ss_dssp CSEEEEEEEEE
T ss_pred eeEEEEEEEEe
Confidence 99999998754
No 203
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.83 E-value=4.4e-11 Score=113.95 Aligned_cols=103 Identities=14% Similarity=0.084 Sum_probs=62.3
Q ss_pred ccCCCCCCCccccchhhhHHHhccCCCCCC---eeEEEEccccCCCc----hHHhc-ccEE----EEccCCCCCCCCCHH
Q psy7365 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVS---SGTAKIYDHDIRTD----MTTIR-RSLG----VCPQYNALFDKLTVE 146 (601)
Q Consensus 79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~---~G~v~~~g~~~~~~----~~~~~-~~ig----~v~Q~~~~~~~~tv~ 146 (601)
+||||| |||| ++ ++|+|+++|+ +|+|.++|.++... ....| +.+| +++|++.+|. .
T Consensus 8 vG~SGs--GKST-----L~-~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i----~ 75 (171)
T 2f1r_A 8 VGTSDS--GKTT-----LI-TRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFI----R 75 (171)
T ss_dssp EESCHH--HHHH-----HH-HHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEE----E
T ss_pred ECCCCC--CHHH-----HH-HHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEE----e
Confidence 899999 4554 44 6899999998 99999999985431 22334 3456 8899877651 0
Q ss_pred HHHHHhHhhcCCChHHHHHHHHHHHHH-cCCCcccCCccccCChHHHhhhhchhhhcchhh
Q psy7365 147 EHMWFYSQLKQVPKDLAQLEISNMIGD-LGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKA 206 (601)
Q Consensus 147 e~l~~~~~~~~~~~~~~~~~~~~~l~~-~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~~ 206 (601)
+ + + .+....+.++++. +. ..-......|||||+||+++||+++.+|.
T Consensus 76 ~---------~-~-~~~~a~l~~~i~~~l~--g~dt~i~EglSgGq~qri~lARall~~p~ 123 (171)
T 2f1r_A 76 R---------V-S-EEEGNDLDWIYERYLS--DYDLVITEGFSKAGKDRIVVVKKPEEVEH 123 (171)
T ss_dssp E---------C-C-HHHHTCHHHHHHHHTT--TCSEEEEESCGGGCCCEEEECSSGGGGGG
T ss_pred c---------C-C-hhhhhCHHHHHHhhCC--CCCEEEECCcCCCCCcEEEEEecccCCCc
Confidence 0 0 1 1111234555655 43 22222333599999999999999999875
No 204
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.83 E-value=2e-10 Score=125.94 Aligned_cols=78 Identities=13% Similarity=0.077 Sum_probs=61.7
Q ss_pred eecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc-------hHHhcccEEEEcc
Q psy7365 69 ISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD-------MTTIRRSLGVCPQ 135 (601)
Q Consensus 69 ~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~-------~~~~~~~ig~v~Q 135 (601)
-+++||++.+ +||||| |||| + .++|+|+++|++|+|.+.|.++... .+..+++++|++|
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGS--GKTT-----L-l~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q 354 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGV--GKTT-----T-IGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQ 354 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTS--SHHH-----H-HHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECC
T ss_pred CCCceeeccCCeEEEEECCCcc--cHHH-----H-HHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEec
Confidence 4678888765 999999 4554 4 4689999999999999998877542 1123567999999
Q ss_pred CCCCCCCCCHHHHHHHhHh
Q psy7365 136 YNALFDKLTVEEHMWFYSQ 154 (601)
Q Consensus 136 ~~~~~~~~tv~e~l~~~~~ 154 (601)
++.+++.+++.+|+.++..
T Consensus 355 ~~~~~p~~tV~e~l~~a~~ 373 (503)
T 2yhs_A 355 HTGADSASVIFDAIQAAKA 373 (503)
T ss_dssp STTCCHHHHHHHHHHHHHH
T ss_pred ccCcCHHHHHHHHHHHHHh
Confidence 9988889999999988643
No 205
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.82 E-value=5.4e-10 Score=129.10 Aligned_cols=76 Identities=21% Similarity=0.162 Sum_probs=61.6
Q ss_pred CChHHHHHHHHHHHH--hCCCCEEEEECC---CCCCCHHHH-HHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEe
Q psy7365 431 LSGGNKRKLSTAIAL--LGNTPLIFLDEP---TSGMDPGAR-RFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMV 504 (601)
Q Consensus 431 LSgGqkQRl~lA~AL--~~~P~lLlLDEP---TsGLD~~~~-~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~ 504 (601)
+|+||++++.+++++ +.+|+++||||| |++||+.+. ..+.+.|.+ .|.|+|++||+.+++. +| .-.+.
T Consensus 636 ~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~l~~-~~--~~~v~ 709 (765)
T 1ewq_A 636 KSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE---RRAYTLFATHYFELTA-LG--LPRLK 709 (765)
T ss_dssp CSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHHHHT-CC--CTTEE
T ss_pred ccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHH-hh--hhcce
Confidence 689999999999999 999999999999 999999886 467777765 5899999999998865 55 33345
Q ss_pred CCEEEEec
Q psy7365 505 NGQFTCLG 512 (601)
Q Consensus 505 ~G~iv~~G 512 (601)
++++.+..
T Consensus 710 n~~~~~~~ 717 (765)
T 1ewq_A 710 NLHVAARE 717 (765)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEE
Confidence 56665554
No 206
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.78 E-value=3e-09 Score=111.00 Aligned_cols=41 Identities=17% Similarity=0.226 Sum_probs=35.9
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchh
Q psy7365 278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMD 325 (601)
Q Consensus 278 ~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~ 325 (601)
|+++|+|||++ ||+.++..+++.+.+. ..+.++|++||+.+
T Consensus 135 ~~vlilDE~~~-L~~~~~~~L~~~le~~------~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 135 YKCVIINEANS-LTKDAQAALRRTMEKY------SKNIRLIMVCDSMS 175 (354)
T ss_dssp CEEEEEECTTS-SCHHHHHHHHHHHHHS------TTTEEEEEEESCSC
T ss_pred CeEEEEeCccc-cCHHHHHHHHHHHHhh------cCCCEEEEEeCCHH
Confidence 68999999999 9999999999999874 24789999999865
No 207
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.77 E-value=8.2e-11 Score=122.17 Aligned_cols=173 Identities=13% Similarity=0.169 Sum_probs=89.3
Q ss_pred cchhHHHHHHhhccccccccccCCeeeeecC-CCCCCccchhhhhcccccccccCCCccceee---cce----EEeec--
Q psy7365 9 VRYDVTQLIRSFLPAANIHKISGSEVTYVLP-QDPASMGAYVSLFESLSENRDKLGIDSYGIS---DTS----LEEQP-- 78 (601)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~~~-- 78 (601)
|.++.. .|..||-.+ +..|.++..++- .|-......-..++++.+.|...+.++..++ +.+ +++.+
T Consensus 99 p~~~~~-~i~r~L~~~---~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~~g~~~L~~~~~G~ 174 (307)
T 1t9h_A 99 PSFSTA-LLDRFLVLV---EANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHFQDK 174 (307)
T ss_dssp TTCCHH-HHHHHHHHH---HTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHHTTCTTTGGGGTTS
T ss_pred CCCCHH-HHHHHHHHH---HHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHhhcCCC
Confidence 555554 666666432 234555554433 3322221100114455566644444444333 222 33322
Q ss_pred ----ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEE---ccccCCCchHHhcccEEEEccCCCCCC----CCCHHH
Q psy7365 79 ----LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKI---YDHDIRTDMTTIRRSLGVCPQYNALFD----KLTVEE 147 (601)
Q Consensus 79 ----~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~---~g~~~~~~~~~~~~~ig~v~Q~~~~~~----~~tv~e 147 (601)
+||||+ |||| + .++|+|+.+|++|+|.+ +|+.++......+..+|+++|.|.++. ++|+ |
T Consensus 175 ~~~lvG~sG~--GKST-----L-ln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 175 TTVFAGQSGV--GKSS-----L-LNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp EEEEEESHHH--HHHH-----H-HHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred EEEEECCCCC--CHHH-----H-HHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-H
Confidence 999999 4555 4 56999999999999999 888775432222223799999997654 6899 8
Q ss_pred HHH--HhH-h-h------cC-CChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhh
Q psy7365 148 HMW--FYS-Q-L------KQ-VPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRK 194 (601)
Q Consensus 148 ~l~--~~~-~-~------~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr 194 (601)
|+. |.. . . .+ ....+...++.++++.++|.+.+.+...+|+.||+||
T Consensus 246 ~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~~ 303 (307)
T 1t9h_A 246 ELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDR 303 (307)
T ss_dssp HHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhc
Confidence 883 321 1 1 11 1222334568899999999987777777888889885
No 208
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.77 E-value=6.2e-10 Score=116.72 Aligned_cols=91 Identities=15% Similarity=0.031 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEE-e
Q psy7365 433 GGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTC-L 511 (601)
Q Consensus 433 gGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~-~ 511 (601)
|||+||++||+||..+|++++|||||+ .++++.|+.+...+.|++++||+++ +...|||+++|.+|+... .
T Consensus 225 gg~~~r~~la~aL~~~p~ilildE~~~-------~e~~~~l~~~~~g~~tvi~t~H~~~-~~~~~dri~~l~~g~~~~~~ 296 (330)
T 2pt7_A 225 GNITSADCLKSCLRMRPDRIILGELRS-------SEAYDFYNVLCSGHKGTLTTLHAGS-SEEAFIRLANMSSSNSAARN 296 (330)
T ss_dssp TTBCHHHHHHHHTTSCCSEEEECCCCS-------THHHHHHHHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHTSGGGTT
T ss_pred CChhHHHHHHHHhhhCCCEEEEcCCCh-------HHHHHHHHHHhcCCCEEEEEEcccH-HHHHhhhheehhcCCcccCC
Confidence 899999999999999999999999998 2467788877644458999999999 888999999998885432 2
Q ss_pred cCHHHHHHHhCCceEEEEEe
Q psy7365 512 GSATHLKSKYGQGYSVKVRC 531 (601)
Q Consensus 512 G~~~~L~~~~~~~~~l~i~~ 531 (601)
-+.+.+.+.......+.+.+
T Consensus 297 ~~~~~i~~~i~~~id~vv~~ 316 (330)
T 2pt7_A 297 IKFESLIEGFKDLIDMIVHI 316 (330)
T ss_dssp SCHHHHHHHHHTTCCEEEEE
T ss_pred CCHHHHHHHHHHhCCEEEEE
Confidence 23445555554444444544
No 209
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.77 E-value=7.1e-09 Score=105.34 Aligned_cols=82 Identities=10% Similarity=0.027 Sum_probs=65.9
Q ss_pred HHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCC--CCCHHHH---HHHHHHHHHHH-hCCcEE
Q psy7365 410 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTS--GMDPGAR---RFLWTCIERAV-SEGRCV 483 (601)
Q Consensus 410 ~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTs--GLD~~~~---~~i~~lL~~l~-~~G~tV 483 (601)
...++++.+.+.+..++++..||+||+|++ ++++.+|+++|+||||+ ++|+... ..+++.|++++ +.|+||
T Consensus 98 ~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tv 174 (279)
T 1nlf_A 98 ERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSI 174 (279)
T ss_dssp HHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEE
T ss_pred hhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEE
Confidence 356678888888888889999999998865 58888999999999999 9998544 78888888886 459999
Q ss_pred EEEccChhHHH
Q psy7365 484 ILTSHNMEECE 494 (601)
Q Consensus 484 llsTHdl~e~~ 494 (601)
|++||+....+
T Consensus 175 i~i~H~~~~~~ 185 (279)
T 1nlf_A 175 VFLHHASKGAA 185 (279)
T ss_dssp EEEEEC-----
T ss_pred EEEecCCCccc
Confidence 99999998765
No 210
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.76 E-value=2.8e-10 Score=122.91 Aligned_cols=181 Identities=11% Similarity=0.073 Sum_probs=97.9
Q ss_pred hcccccccccCCCccceeecceEEeec--------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365 52 FESLSENRDKLGIDSYGISDTSLEEQP--------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D 122 (601)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~ 122 (601)
+++ ++.|++ .+ ++|+||++.+ +||||+ ||||| .++|+|+. ++|.++.. .
T Consensus 19 ~~~-~~~y~~----~~-L~~vsl~i~~Gei~~vaLvG~nGa--GKSTL------ln~L~G~~--------l~g~~~~~~~ 76 (427)
T 2qag_B 19 LAG-HVGFDS----LP-DQLVNKSVSQGFCFNILCVGETGL--GKSTL------MDTLFNTK--------FEGEPATHTQ 76 (427)
T ss_dssp CCC-CC-CC------C-HHHHHHSCC-CCEEEEEEECSTTS--SSHHH------HHHHHTSC--------C-------CC
T ss_pred Eee-EEEECC----ee-cCCCceEecCCCeeEEEEECCCCC--CHHHH------HHHHhCcc--------ccCCcCCCCC
Confidence 455 666643 33 8899988755 799999 67765 67999984 33443321 1
Q ss_pred hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCCh--------HHHHHHHHHHHHHc-CCCcccCCccccCChHHHh
Q psy7365 123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPK--------DLAQLEISNMIGDL-GIPHKRTSLANTLSGGMQR 193 (601)
Q Consensus 123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~--------~~~~~~~~~~l~~~-gl~~~~~~~~~~LSgG~~q 193 (601)
....++.+||++|++.+++.+||.||+.|+.. .+. +.+..+..++++.. ++. .+|++....
T Consensus 77 ~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~---~~~~~~~~~i~~~i~~q~~~~L~e~~~i~-------r~l~~~~d~ 146 (427)
T 2qag_B 77 PGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQ---INKEDSYKPIVEFIDAQFEAYLQEELKIR-------RVLHTYHDS 146 (427)
T ss_dssp SSCEEEEEEEEEEC--CEEEEEEEEEECCCC----CCHHHHSHHHHHHHHHHHHHHHHHC--CC-------CCCCCSCC-
T ss_pred ccceEeeEEEEeecCccccccchhhhhhhhhc---cccchhhhHHHHHHHHHHHHHHHHHHhhh-------hhhcccccc
Confidence 12234579999999999889999999877542 111 12233445555554 433 223333333
Q ss_pred hhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhh
Q psy7365 194 KLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAM 273 (601)
Q Consensus 194 r~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 273 (601)
|+..+-.++.|. .++ +.. .. +.++-++
T Consensus 147 rVh~~v~fI~d~-----------------------------------~~~--l~~--~D--------------ieilk~L 173 (427)
T 2qag_B 147 RIHVCLYFIAPT-----------------------------------GHS--LKS--LD--------------LVTMKKL 173 (427)
T ss_dssp -CCEEEEEECCC-----------------------------------C-----CH--HH--------------HHHHHHT
T ss_pred cccEEEEEEeCC-----------------------------------CCC--CCH--HH--------------HHHHHHH
Confidence 432110011110 000 000 00 1122222
Q ss_pred ccCCCcEEEEecCCCCCCHHHHHHHHHHHHH-HhhhccccCCcEEEEEecc
Q psy7365 274 SFVPASTVILDEPTSGVDPYSRRSIWELLIK-VYYASHSLSGRTVILTTHY 323 (601)
Q Consensus 274 ~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~-l~~~~~~~~G~TVI~~tHd 323 (601)
. ..++++++|||+..|.+.....+.+.+.+ + ...|.+|+.+|.+
T Consensus 174 ~-~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L-----~~~gi~I~~is~~ 218 (427)
T 2qag_B 174 D-SKVNIIPIIAKADAISKSELTKFKIKITSEL-----VSNGVQIYQFPTD 218 (427)
T ss_dssp C-SCSEEEEEESCGGGSCHHHHHHHHHHHHHHH-----BTTBCCCCCCC--
T ss_pred h-hCCCEEEEEcchhccchHHHHHHHHHHHHHH-----HHcCCcEEecCCC
Confidence 2 34679999999999999999888888886 5 3578999988764
No 211
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.71 E-value=6.1e-11 Score=128.19 Aligned_cols=115 Identities=17% Similarity=0.137 Sum_probs=78.2
Q ss_pred ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCch-----HHhcccEEEEc---------cCCCC--CCC
Q psy7365 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDM-----TTIRRSLGVCP---------QYNAL--FDK 142 (601)
Q Consensus 79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~-----~~~~~~ig~v~---------Q~~~~--~~~ 142 (601)
+||||+ |||| + .++|+|+++|++|+|.+.|.++.... ..+++.+|+.| |+|.+ +..
T Consensus 173 ~GpnGS--GKTT-----l-L~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgE 244 (418)
T 1p9r_A 173 TGPTGS--GKST-----T-LYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGE 244 (418)
T ss_dssp ECSTTS--CHHH-----H-HHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESC
T ss_pred ECCCCC--CHHH-----H-HHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcC
Confidence 999999 4554 4 46899999999999999998874211 12344566766 99874 344
Q ss_pred ----CCHHHHHHHhHhhc----CCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchhh
Q psy7365 143 ----LTVEEHMWFYSQLK----QVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKA 206 (601)
Q Consensus 143 ----~tv~e~l~~~~~~~----~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~~ 206 (601)
.|+.+++.+...-+ .+....... +.+.|..+|+.... .+.+|||||+|| +|++++.+|.
T Consensus 245 iRd~et~~~~l~a~~tGhlv~~tlh~~~~~~-~i~rL~~lgl~~~~--~~~~LSgg~~QR--LaraL~~~p~ 311 (418)
T 1p9r_A 245 IRDLETAQIAVQASLTGHLVMSTLHTNTAVG-AVTRLRDMGIEPFL--ISSSLLGVLAQR--LVRTLCPDCK 311 (418)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEEECCSSSHH-HHHHHHHHTCCHHH--HHHHEEEEEEEE--EEEEECTTTC
T ss_pred cCCHHHHHHHHHHHHhCCCcccccchhhHHH-HHHHHHHcCCcHHH--HHHHHHHHHHHH--hhhhhcCCCC
Confidence 58888887753211 011111112 23357788988653 789999999999 7888888764
No 212
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.69 E-value=3.1e-10 Score=119.83 Aligned_cols=81 Identities=20% Similarity=0.316 Sum_probs=74.0
Q ss_pred cccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh--CCc-----EEEEEccChhHHHhhCC
Q psy7365 426 REVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVS--EGR-----CVILTSHNMEECEALCT 498 (601)
Q Consensus 426 ~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~--~G~-----tVllsTHdl~e~~~l~d 498 (601)
..+..||+|| ||+++| +++|++ |+|+||..+..++++++++.+ +|. ||+++|||++ +.+||
T Consensus 167 d~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d 234 (347)
T 2obl_A 167 DSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGD 234 (347)
T ss_dssp ETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHH
T ss_pred hhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--Chhhh
Confidence 4688999999 899999 688888 999999999999999999864 487 9999999999 78999
Q ss_pred EEEEEeCCEEEEecCHHHHH
Q psy7365 499 KLTIMVNGQFTCLGSATHLK 518 (601)
Q Consensus 499 rv~iL~~G~iv~~G~~~~L~ 518 (601)
++++|.+|+++.+++++++.
T Consensus 235 ~v~~i~dG~Ivl~~~l~~~~ 254 (347)
T 2obl_A 235 EVRSILDGHIVLTRELAEEN 254 (347)
T ss_dssp HHHHHCSEEEEBCHHHHTTT
T ss_pred heEEeeCcEEEEeCCHHHcC
Confidence 99999999999999998875
No 213
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.68 E-value=1.1e-11 Score=118.23 Aligned_cols=107 Identities=9% Similarity=-0.026 Sum_probs=62.6
Q ss_pred cccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcC
Q psy7365 78 PLGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQ 157 (601)
Q Consensus 78 ~~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~ 157 (601)
-+||||| |||| ++ ++|+|. |+.|.|.++|.++.... ..+..++|++|++. +..+|.+|+.+......
T Consensus 14 l~G~~Gs--GKST-----l~-~~La~~--~~~g~i~i~~d~~~~~~-~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~~ 80 (191)
T 1zp6_A 14 LSGHPGS--GKST-----IA-EALANL--PGVPKVHFHSDDLWGYI-KHGRIDPWLPQSHQ--QNRMIMQIAADVAGRYA 80 (191)
T ss_dssp EEECTTS--CHHH-----HH-HHHHTC--SSSCEEEECTTHHHHTC-CSSCCCTTSSSHHH--HHHHHHHHHHHHHHHHH
T ss_pred EECCCCC--CHHH-----HH-HHHHhc--cCCCeEEEcccchhhhh-hcccccCCccchhh--hhHHHHHHHHHHHHHHh
Confidence 3899999 4555 44 589998 78899999998752111 11234678888654 46789999877543220
Q ss_pred CChHHHHHHHHHHHHHcCCCccc--CCccccCChHHHhhhhchh
Q psy7365 158 VPKDLAQLEISNMIGDLGIPHKR--TSLANTLSGGMQRKLDNVK 199 (601)
Q Consensus 158 ~~~~~~~~~~~~~l~~~gl~~~~--~~~~~~LSgG~~qr~~~~~ 199 (601)
... ....++.++..+++.... +..+..+|+|++|++.++|
T Consensus 81 ~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R 122 (191)
T 1zp6_A 81 KEG--YFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIER 122 (191)
T ss_dssp HTS--CEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHH
T ss_pred ccC--CeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHH
Confidence 000 000011111122232222 4557789999999987543
No 214
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.68 E-value=8.3e-09 Score=99.85 Aligned_cols=59 Identities=12% Similarity=0.023 Sum_probs=43.9
Q ss_pred CcEEEEecCCCCCCHHHH-----HH---HHHHHHHHhhhccccCCcEEEEEecchh-------------HHHhcCCEEEE
Q psy7365 278 ASTVILDEPTSGVDPYSR-----RS---IWELLIKVYYASHSLSGRTVILTTHYMD-------------EADLLGDRIAI 336 (601)
Q Consensus 278 ~~~liLDEPtsgLD~~~~-----~~---l~~~l~~l~~~~~~~~G~TVI~~tHdl~-------------~~~~l~Drv~v 336 (601)
|+++|+||||+.+|+... .. +.+.|+++. +..|.|+|+++|... .+...||++++
T Consensus 106 ~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~----~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~ 181 (220)
T 2cvh_A 106 FALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIA----RKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILR 181 (220)
T ss_dssp EEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHH----HHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEE
T ss_pred CCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHH----HHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEE
Confidence 689999999999997432 33 344455542 234899999999876 56789999999
Q ss_pred ecCC
Q psy7365 337 IAAG 340 (601)
Q Consensus 337 L~~G 340 (601)
|...
T Consensus 182 l~~~ 185 (220)
T 2cvh_A 182 LDKL 185 (220)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 9754
No 215
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.65 E-value=3.4e-11 Score=116.77 Aligned_cols=116 Identities=13% Similarity=0.118 Sum_probs=93.1
Q ss_pred ccccCCCCcccC--CCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHH----HHHHHHHHHh
Q psy7365 373 YIGYCPQFDALN--DRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNK----RKLSTAIALL 446 (601)
Q Consensus 373 ~ig~v~Q~~~l~--~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqk----QRl~lA~AL~ 446 (601)
.++|++|++.++ ..+|+.++..+.. +.+.....+.+.+.++.+++.+..++++.++|+|++ ||+++|++++
T Consensus 33 ~i~~v~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li 109 (211)
T 3asz_A 33 RVALLPMDHYYKDLGHLPLEERLRVNY---DHPDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVI 109 (211)
T ss_dssp GEEEEEGGGCBCCCTTSCHHHHHHSCT---TSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEE
T ss_pred CeEEEecCccccCcccccHHHhcCCCC---CChhhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEE
Confidence 578999988765 5678888865532 222222345677888888888888889999999974 6889999999
Q ss_pred CCCCEEEEECCCCC-------CCHHHHHHHHHHHHHH-HhCCcEEEEEccChh
Q psy7365 447 GNTPLIFLDEPTSG-------MDPGARRFLWTCIERA-VSEGRCVILTSHNME 491 (601)
Q Consensus 447 ~~P~lLlLDEPTsG-------LD~~~~~~i~~lL~~l-~~~G~tVllsTHdl~ 491 (601)
.+|+++++||||++ ||+.....+++.+++. .++|.|++.++|++.
T Consensus 110 ~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 110 LEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp EESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred EeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999 9999999999998875 456999999999853
No 216
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.62 E-value=1.3e-08 Score=118.13 Aligned_cols=93 Identities=16% Similarity=0.191 Sum_probs=68.1
Q ss_pred CCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHH-HHHHHHHHhC-CcEEEEEccChhHHHhh
Q psy7365 419 ALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFL-WTCIERAVSE-GRCVILTSHNMEECEAL 496 (601)
Q Consensus 419 ~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i-~~lL~~l~~~-G~tVllsTHdl~e~~~l 496 (601)
+..+......+++|++|++ +..+...+.+|+++||||||+|+|+.....+ +.+++.+.++ |.++|++||+.+.+ .+
T Consensus 658 ~~~d~l~~~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~-~l 735 (800)
T 1wb9_A 658 GAADDLASGRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT-QL 735 (800)
T ss_dssp C-----------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GH
T ss_pred CHHHHHHhhhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHH-HH
Confidence 3333334445677888765 4555567999999999999999999887775 8899998874 99999999999776 48
Q ss_pred CCEEEEEeCCEEEEecC
Q psy7365 497 CTKLTIMVNGQFTCLGS 513 (601)
Q Consensus 497 ~drv~iL~~G~iv~~G~ 513 (601)
||++..+.+|++.+...
T Consensus 736 ~d~~~~v~n~~~~~~~~ 752 (800)
T 1wb9_A 736 PEKMEGVANVHLDALEH 752 (800)
T ss_dssp HHHSTTEEEEEEEEEEE
T ss_pred hhhhhceEEEEEEEEEc
Confidence 99988889998877643
No 217
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.62 E-value=2.2e-09 Score=110.50 Aligned_cols=98 Identities=11% Similarity=0.005 Sum_probs=60.9
Q ss_pred eecccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHHhcccEEEEccCCCCCCCCCHHHHHHHhH--
Q psy7365 76 EQPLGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYS-- 153 (601)
Q Consensus 76 ~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~-- 153 (601)
+.-.||||| |||| ++ ++|.+++++. | .. ++.+.+|+|++.+|+ .+..+|+.+..
T Consensus 34 i~I~G~sGs--GKST-----la-~~L~~~l~~~-g------~~--------~~~~~iv~~D~f~~~-~~~~~~l~~~~~~ 89 (290)
T 1odf_A 34 IFFSGPQGS--GKSF-----TS-IQIYNHLMEK-Y------GG--------EKSIGYASIDDFYLT-HEDQLKLNEQFKN 89 (290)
T ss_dssp EEEECCTTS--SHHH-----HH-HHHHHHHHHH-H------GG--------GSCEEEEEGGGGBCC-HHHHHHHHHHTTT
T ss_pred EEEECCCCC--CHHH-----HH-HHHHHHhhhc-C------CC--------CceEEEeccccccCC-hHHHHHHhccccc
Confidence 344899999 4554 45 5788888763 2 10 334566699987775 48889988752
Q ss_pred ----hhcCCChHHHHHHHHHHHHHcCCC--------cccCCccccCChHHHhhhhc
Q psy7365 154 ----QLKQVPKDLAQLEISNMIGDLGIP--------HKRTSLANTLSGGMQRKLDN 197 (601)
Q Consensus 154 ----~~~~~~~~~~~~~~~~~l~~~gl~--------~~~~~~~~~LSgG~~qr~~~ 197 (601)
...|.+.........+.++.+.-. .....+...+||||+||+++
T Consensus 90 ~~l~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~ 145 (290)
T 1odf_A 90 NKLLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPT 145 (290)
T ss_dssp CGGGSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSS
T ss_pred cchhhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCcccccccc
Confidence 223344322233455666666432 12345678999999999864
No 218
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.59 E-value=7.7e-08 Score=92.96 Aligned_cols=79 Identities=11% Similarity=0.024 Sum_probs=62.1
Q ss_pred cCcCChHH--HHHHHHHHHHhCC-CCEEEEECCCCCCCHHH--------HHHHHHHHHHHHhC-CcEEEEEccChh----
Q psy7365 428 VRTLSGGN--KRKLSTAIALLGN-TPLIFLDEPTSGMDPGA--------RRFLWTCIERAVSE-GRCVILTSHNME---- 491 (601)
Q Consensus 428 ~~~LSgGq--kQRl~lA~AL~~~-P~lLlLDEPTsGLD~~~--------~~~i~~lL~~l~~~-G~tVllsTHdl~---- 491 (601)
+..+|+++ +|++..+++++.+ |+++++||||+++|+.. ..++++.|++++++ |.|||+++|...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~ 161 (220)
T 2cvh_A 82 LFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRT 161 (220)
T ss_dssp EECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTT
T ss_pred EEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCC
Confidence 34556665 4678888899986 99999999999999743 24455557777654 899999999876
Q ss_pred ---------HHHhhCCEEEEEeCC
Q psy7365 492 ---------ECEALCTKLTIMVNG 506 (601)
Q Consensus 492 ---------e~~~l~drv~iL~~G 506 (601)
.++.+||++++|++.
T Consensus 162 ~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 162 EMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp SSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred CccccCCCcceeecCcEEEEEEEe
Confidence 678899999999865
No 219
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.58 E-value=4.4e-09 Score=111.96 Aligned_cols=58 Identities=10% Similarity=0.126 Sum_probs=40.6
Q ss_pred CChHHHHHHHHHHHHhCCCCE--EEEECCCCCCCHHH---H-----HHHHHHHHHHHhCCcEEEEEccCh
Q psy7365 431 LSGGNKRKLSTAIALLGNTPL--IFLDEPTSGMDPGA---R-----RFLWTCIERAVSEGRCVILTSHNM 490 (601)
Q Consensus 431 LSgGqkQRl~lA~AL~~~P~l--LlLDEPTsGLD~~~---~-----~~i~~lL~~l~~~G~tVllsTHdl 490 (601)
+|+| ||++++.++..+|++ +|+||.|+.+|... . +.+.+...++..+|.|.+.+.|.+
T Consensus 284 ~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~ 351 (372)
T 2ewv_A 284 KIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEA 351 (372)
T ss_dssp CSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSS
T ss_pred cCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHH
Confidence 3678 889999999999999 99999999988641 1 223333334445687765555543
No 220
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.56 E-value=7.2e-10 Score=115.96 Aligned_cols=107 Identities=22% Similarity=0.288 Sum_probs=68.3
Q ss_pred ccCCCCCCCccccchhhhHHHhccCCC----CCCeeEEEEccccCCCchHHh-cccEEEEccCCCCCCCCCHHHHHHHhH
Q psy7365 79 LGPSGITLGLHTLGLEFVSRSMLMGML----PVSSGTAKIYDHDIRTDMTTI-RRSLGVCPQYNALFDKLTVEEHMWFYS 153 (601)
Q Consensus 79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~----~~~~G~v~~~g~~~~~~~~~~-~~~ig~v~Q~~~~~~~~tv~e~l~~~~ 153 (601)
.||||+ ||||| .++|+|.+ ++++|.+..++.++....... +..|++++|.+.+++ ++.|++....
T Consensus 57 ~Gp~G~--GKTTL------a~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~~~l~~--~~~e~L~~~~ 126 (334)
T 1in4_A 57 AGPPGL--GKTTL------AHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNK--AVEELLYSAI 126 (334)
T ss_dssp ESSTTS--SHHHH------HHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETGGGCCH--HHHHHHHHHH
T ss_pred ECCCCC--cHHHH------HHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcchhhcCH--HHHHHHHHHH
Confidence 899999 56654 46889887 778888877766543211122 457999999887765 7888886555
Q ss_pred hhcCCC----hHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhh
Q psy7365 154 QLKQVP----KDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLD 196 (601)
Q Consensus 154 ~~~~~~----~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~ 196 (601)
+.++.+ .....+.+...+..+++.. .++.+..||+|++||++
T Consensus 127 ~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~~~Ls~~l~sR~~ 172 (334)
T 1in4_A 127 EDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRSGLLSSPLRSRFG 172 (334)
T ss_dssp HTSCCCC---------------CCCEEEE-EESCGGGSCHHHHTTCS
T ss_pred HhcccceeeccCcccccccccCCCeEEEE-ecCCcccCCHHHHHhcC
Confidence 544432 2222344556677777765 67788999999999975
No 221
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.52 E-value=6.3e-08 Score=94.16 Aligned_cols=61 Identities=16% Similarity=0.111 Sum_probs=46.1
Q ss_pred CCCCEEEEECCCCCCCHH-------H-----HHHHHHHHHHHHh-CCcEEEEEccChhH----HHhhCCEEEEEeCCE
Q psy7365 447 GNTPLIFLDEPTSGMDPG-------A-----RRFLWTCIERAVS-EGRCVILTSHNMEE----CEALCTKLTIMVNGQ 507 (601)
Q Consensus 447 ~~P~lLlLDEPTsGLD~~-------~-----~~~i~~lL~~l~~-~G~tVllsTHdl~e----~~~l~drv~iL~~G~ 507 (601)
.+|+++++||||+++|+. . ..++++.|.++++ .|+|||++||++++ ++.+||++++|++|+
T Consensus 124 ~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 124 RPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp SCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred CceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 499999999999999984 2 2367777777754 49999999996666 999999999998753
No 222
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.50 E-value=2.4e-08 Score=107.34 Aligned_cols=61 Identities=13% Similarity=0.077 Sum_probs=41.5
Q ss_pred CCcEEEEecCCCCCCHHHH------------HHHHHHHHHHhhhccccCCcEEEEEecch-------------------h
Q psy7365 277 PASTVILDEPTSGVDPYSR------------RSIWELLIKVYYASHSLSGRTVILTTHYM-------------------D 325 (601)
Q Consensus 277 ~~~~liLDEPtsgLD~~~~------------~~l~~~l~~l~~~~~~~~G~TVI~~tHdl-------------------~ 325 (601)
.|+++|+|||++.+|+... ..+.+.|+++. +..|.|||+++|.. .
T Consensus 273 ~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~la----ke~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~ 348 (400)
T 3lda_A 273 RFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLA----DQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGN 348 (400)
T ss_dssp CEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHH----HHHCCEEEEEEEC--------------------C
T ss_pred CCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHH----HHcCCEEEEEEeecccCCccccccCCCccCCchh
Confidence 4689999999999986432 44555666653 23589999999983 2
Q ss_pred HHHhcCCEEEEecCCc
Q psy7365 326 EADLLGDRIAIIAAGK 341 (601)
Q Consensus 326 ~~~~l~Drv~vL~~Gk 341 (601)
.+...+|.+++|..++
T Consensus 349 ~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 349 IMAYSSTTRLGFKKGK 364 (400)
T ss_dssp HHHHHCSEEEEEEECS
T ss_pred HHHHhcceEEEEEecC
Confidence 2466778888887653
No 223
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.41 E-value=5.9e-08 Score=91.62 Aligned_cols=44 Identities=23% Similarity=0.350 Sum_probs=37.5
Q ss_pred CcEEEEecCCC-CCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhH
Q psy7365 278 ASTVILDEPTS-GVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDE 326 (601)
Q Consensus 278 ~~~liLDEPts-gLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~ 326 (601)
|++||||||++ ++|+..+..+++++.+.+ .+|+++|++||....
T Consensus 101 ~~llilDE~~~~~~~~~~~~~l~~ll~~~~-----~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 101 SPVLVLDDLGSERLSDWQRELISYIITYRY-----NNLKSTIITTNYSLQ 145 (180)
T ss_dssp CSEEEEETCSSSCCCHHHHHHHHHHHHHHH-----HTTCEEEEECCCCSC
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHHHHHHH-----HcCCCEEEEcCCChh
Confidence 58999999985 999999999999998763 358999999998654
No 224
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.39 E-value=3.8e-10 Score=115.13 Aligned_cols=119 Identities=13% Similarity=0.044 Sum_probs=82.5
Q ss_pred eeecceEEeec----ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc-hHHhcccEEEEccCC-CCCC
Q psy7365 68 GISDTSLEEQP----LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD-MTTIRRSLGVCPQYN-ALFD 141 (601)
Q Consensus 68 ~~~~~~~~~~~----~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~-~~~~~~~ig~v~Q~~-~~~~ 141 (601)
+++++++++.. .||||| ||||| .++|+|.+.+ |.|.++|.++... .....+.++++||.+ ..++
T Consensus 35 ~l~~~~l~~~~GvlL~Gp~Gt--GKTtL------akala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p 104 (274)
T 2x8a_A 35 QFKALGLVTPAGVLLAGPPGC--GKTLL------AKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAP 104 (274)
T ss_dssp HHHHTTCCCCSEEEEESSTTS--CHHHH------HHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHcCCCCCCeEEEECCCCC--cHHHH------HHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCC
Confidence 67777777655 999999 56654 4699999877 7999999887542 233455688999986 4667
Q ss_pred CCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchhhHH
Q psy7365 142 KLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWI 208 (601)
Q Consensus 142 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~ 208 (601)
.+++.||+.+.....+. ... + .+....++.+.+|||||+||+.+++++.|+|..+
T Consensus 105 ~i~~~Deid~~~~~r~~------~~~----~--~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L 159 (274)
T 2x8a_A 105 CVIFFDEVDALCPRRSD------RET----G--ASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII 159 (274)
T ss_dssp EEEEEETCTTTCC---------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS
T ss_pred CeEeeehhhhhhcccCC------Ccc----h--HHHHHHHHHHHhhhcccccCCEEEEeecCChhhC
Confidence 77777777543221110 000 0 1334456778899999999999999999998653
No 225
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.36 E-value=3.5e-08 Score=102.22 Aligned_cols=141 Identities=11% Similarity=0.045 Sum_probs=86.8
Q ss_pred CCEEEEecCCccccccCcccc-------ccccccccccccccCCcc---------cccccccCCCCcccCCCCCHHHHHH
Q psy7365 331 GDRIAIIAAGKLQCCGSSVFL-------KNSFARGYYLSLDMKSAP---------QKSYIGYCPQFDALNDRLTPREHLE 394 (601)
Q Consensus 331 ~Drv~vL~~GkIv~~G~~~lL-------k~~~g~g~~igld~~~~~---------~~~~ig~v~Q~~~l~~~lTv~E~L~ 394 (601)
+..+++++.+. +|+++.+ ++..++..+.+.|..... .+..++|++|++.+++.+++++++.
T Consensus 102 g~vi~lvG~nG---sGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 102 GRVVLVVGVNG---VGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSEEEEECSTT---SSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CeEEEEECCCC---CcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 56677776432 5555433 223344444454443211 1356999999998888889999987
Q ss_pred HhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q psy7365 395 FYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIE 474 (601)
Q Consensus 395 ~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~ 474 (601)
+... .+.. ..+++..|+.+..++.+.+|| +||++||||++.+|+.++| .||+.+...+++.++
T Consensus 179 ~~~~-~~~d--------~~llDt~G~~~~~~~~~~eLs---~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~ 241 (304)
T 1rj9_A 179 AMKA-RGYD--------LLFVDTAGRLHTKHNLMEELK---KVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAK 241 (304)
T ss_dssp HHHH-HTCS--------EEEECCCCCCTTCHHHHHHHH---HHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHH
T ss_pred HHHh-CCCC--------EEEecCCCCCCchHHHHHHHH---HHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHH
Confidence 6421 1111 013344455444444455555 8999999999999994443 344444455666677
Q ss_pred HHHhC-CcEEEEEccChh
Q psy7365 475 RAVSE-GRCVILTSHNME 491 (601)
Q Consensus 475 ~l~~~-G~tVllsTHdl~ 491 (601)
++.+. |.|+|++||+.+
T Consensus 242 ~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 242 KFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp HHHHHHCCSEEEEECTTS
T ss_pred HHHHHcCCcEEEEECCcc
Confidence 76654 899999999854
No 226
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.35 E-value=5.5e-11 Score=113.48 Aligned_cols=134 Identities=16% Similarity=0.090 Sum_probs=86.7
Q ss_pred ccccCCCCcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcC--ChHHHHHHHHHH------H
Q psy7365 373 YIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTL--SGGNKRKLSTAI------A 444 (601)
Q Consensus 373 ~ig~v~Q~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~L--SgGqkQRl~lA~------A 444 (601)
..|+++|....++..++++++.+....+.... ...+++.+. .....+...++ |+||+|++.++. +
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~ 114 (189)
T 2bdt_A 42 VGGYRPPWESDELLALTWKNITDLTVNFLLAQ------NDVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREE 114 (189)
T ss_dssp CTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTT------CEEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHH
T ss_pred ccccccCccchhHHHHHHHHHHHHHHHHHhcC------CcEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHH
Confidence 46788886655555678888776543221000 000111111 11111223345 899999988888 8
Q ss_pred HhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccC-hhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365 445 LLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN-MEECEALCTKLTIMVNGQFTCLGSATHLKS 519 (601)
Q Consensus 445 L~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHd-l~e~~~l~drv~iL~~G~iv~~G~~~~L~~ 519 (601)
+..+|+...+|+ |+|+..++. ++.+..+.+.+.++|.+||. +++++++||+|+ ++|++++.|+++-+..
T Consensus 115 l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~~ 184 (189)
T 2bdt_A 115 LLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLEH 184 (189)
T ss_dssp HHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC--------
T ss_pred HHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchhh
Confidence 999998888884 899999888 99998886668899999999 999999999999 9999999999987643
No 227
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.32 E-value=1.1e-08 Score=115.56 Aligned_cols=122 Identities=10% Similarity=0.139 Sum_probs=83.8
Q ss_pred ccccccccCCCCcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCC
Q psy7365 369 PQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGN 448 (601)
Q Consensus 369 ~~~~~ig~v~Q~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~ 448 (601)
..++.+||+||++.+++.+||++++.+.....+... -++.. +++.++.+..+.
T Consensus 94 ~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~-------------~~~s~--------------~~i~l~i~~~~~ 146 (608)
T 3szr_A 94 KWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEG-------------MGISH--------------ELITLEISSRDV 146 (608)
T ss_dssp CCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSS-------------SCCCS--------------CCEEEEEEESSS
T ss_pred cceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCc-------------cccch--------------HHHHHHhcCCCC
Confidence 346789999999999999999999977543221100 01110 112222333458
Q ss_pred CCEEEEECC------CCCCCHHHHHHHHHHHHHHHhC--CcEEEEEccChhHH--------Hhh----CCEEEEEeCCEE
Q psy7365 449 TPLIFLDEP------TSGMDPGARRFLWTCIERAVSE--GRCVILTSHNMEEC--------EAL----CTKLTIMVNGQF 508 (601)
Q Consensus 449 P~lLlLDEP------TsGLD~~~~~~i~~lL~~l~~~--G~tVllsTHdl~e~--------~~l----~drv~iL~~G~i 508 (601)
|+++++||| |+|||+..+..++++++++..+ +.+++++||+++.+ ..+ +..|+++.++.+
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dl 226 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDL 226 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGG
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhh
Confidence 999999999 9999999999999999997543 77899999998633 222 467899999988
Q ss_pred EEecCHHHH
Q psy7365 509 TCLGSATHL 517 (601)
Q Consensus 509 v~~G~~~~L 517 (601)
+..|+.+++
T Consensus 227 v~~g~~~~~ 235 (608)
T 3szr_A 227 VDKGTEDKV 235 (608)
T ss_dssp SSSSSTTCC
T ss_pred cCcccHHHH
Confidence 888876543
No 228
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.29 E-value=2.3e-09 Score=114.78 Aligned_cols=62 Identities=15% Similarity=0.019 Sum_probs=52.1
Q ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEE-EecCC-cccccc
Q psy7365 279 STVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIA-IIAAG-KLQCCG 346 (601)
Q Consensus 279 ~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~-vL~~G-kIv~~G 346 (601)
++.++|||+.++|+..++..++.+.++. ...|.|++ +|.+.....+|+++. +|.+| +++..+
T Consensus 143 di~ildeel~~~D~~~~~k~~~~l~~~~----~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~ 206 (392)
T 1ni3_A 143 DLSIIVDELLIKDAEFVEKHLEGLRKIT----SRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKG 206 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT----CCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGS
T ss_pred hhhhchhhhHHHHHHHHHHHHHHHHHHH----HhcCCccc--cccHHHHHHHHHHHHHHhccCCceeecC
Confidence 7888999999999999999999888751 23577754 999999999999999 89999 776554
No 229
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.29 E-value=4.3e-07 Score=84.04 Aligned_cols=40 Identities=15% Similarity=0.331 Sum_probs=31.9
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcE-EEEEecc
Q psy7365 278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRT-VILTTHY 323 (601)
Q Consensus 278 ~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~T-VI~~tHd 323 (601)
|++|++|||++ +++..++.+++++.+++ .+|++ +|++||.
T Consensus 84 ~~lLilDE~~~-~~~~~~~~l~~li~~~~-----~~g~~~iiits~~ 124 (149)
T 2kjq_A 84 AEYLAVDQVEK-LGNEEQALLFSIFNRFR-----NSGKGFLLLGSEY 124 (149)
T ss_dssp CSEEEEESTTC-CCSHHHHHHHHHHHHHH-----HHTCCEEEEEESS
T ss_pred CCEEEEeCccc-cChHHHHHHHHHHHHHH-----HcCCcEEEEECCC
Confidence 48999999998 66666888999998874 34677 8888885
No 230
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.24 E-value=6e-09 Score=107.70 Aligned_cols=105 Identities=12% Similarity=0.099 Sum_probs=66.9
Q ss_pred ccccccCCCCcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCC
Q psy7365 371 KSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTP 450 (601)
Q Consensus 371 ~~~ig~v~Q~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~ 450 (601)
.+.+++++|.+.++..+|++|+..+...... .+..+.....+ .+..++++.++|||||||+.+|+|++
T Consensus 62 ~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~--~e~~~~l~~~l------~~~~~~~~~~~sgg~rqrv~~ara~~---- 129 (301)
T 2qnr_A 62 IEASTVEIEERGVKLRLTVVDTPGYGDAINC--RDCFKTIISYI------DEQFERYLHDESGLNRRHIIDNRVHC---- 129 (301)
T ss_dssp ---CEEEEC---CCEEEEEEEEC-------------CTTHHHHH------HHHHHHHHHHHTSSCCTTCCCCCCCE----
T ss_pred EeeEEEEecCCCcccCcchhhhhhhhhhcCc--HHHHHHHHHHH------HHHHHHHHHHhCHHhhhhhhhhhhhh----
Confidence 3457899998888788899988766432210 00001111111 23346788999999999998888875
Q ss_pred EEEEECCCC-CCCHHHHHHHHHHHHHHHhC-CcEEEEEccChh
Q psy7365 451 LIFLDEPTS-GMDPGARRFLWTCIERAVSE-GRCVILTSHNME 491 (601)
Q Consensus 451 lLlLDEPTs-GLD~~~~~~i~~lL~~l~~~-G~tVllsTHdl~ 491 (601)
++++||||+ |||+... ++++++.++ +.++++++||+.
T Consensus 130 ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 130 CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 999999998 5999873 566666544 789999999985
No 231
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.23 E-value=1.6e-07 Score=101.41 Aligned_cols=107 Identities=17% Similarity=0.100 Sum_probs=56.7
Q ss_pred eecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHHhcccEEEEccCCCCCCC
Q psy7365 69 ISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDK 142 (601)
Q Consensus 69 ~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~Q~~~~~~~ 142 (601)
.++++|++.. +||||+ ||||| +++|+|..+ .+.+.+.++ +...+|+++++.. ..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gA--GKSTL------L~~Lsg~~~------~i~~~~ftT----l~p~~G~V~~~~~--~~ 206 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNA--GKSSL------LAAMTRAHP------KIAPYPFTT----LSPNLGVVEVSEE--ER 206 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGG--CHHHH------HHHHCSSCC------EECCCTTCS----SCCEEEEEECSSS--CE
T ss_pred EeeeeeEEcCCCEEEEECCCCC--cHHHH------HHHHHcCCc------cccCcccce----ecceeeEEEecCc--ce
Confidence 5789999876 999999 56654 568899854 334444322 1234566655430 00
Q ss_pred CCHHHHHHH---hHhhcCCChHHHH--HHHHHHHHHcCCCcccCCccccCChHHHhhhhch
Q psy7365 143 LTVEEHMWF---YSQLKQVPKDLAQ--LEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNV 198 (601)
Q Consensus 143 ~tv~e~l~~---~~~~~~~~~~~~~--~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~ 198 (601)
+++.+..-+ ..+..++.....+ ++++.++..++++ ++++.+||+||+|++.++
T Consensus 207 ~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls---~~~~~~ls~g~~el~~la 264 (416)
T 1udx_A 207 FTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA---DEPLKTLETLRKEVGAYD 264 (416)
T ss_dssp EEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT---SCHHHHHHHHHHHHHHHC
T ss_pred EEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc---cCCHHHHHHHHHHHHHHh
Confidence 011110000 0111122221111 1233445555665 677899999999998643
No 232
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.20 E-value=1.7e-07 Score=103.54 Aligned_cols=176 Identities=14% Similarity=0.090 Sum_probs=98.0
Q ss_pred ccCCCCCCCccccchhhhHHHhccCC-CCCCeeEEEEccccCCCchHHhcccEEEEccCCCCCCCC--CHHHHHHHhHhh
Q psy7365 79 LGPSGITLGLHTLGLEFVSRSMLMGM-LPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKL--TVEEHMWFYSQL 155 (601)
Q Consensus 79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl-~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~Q~~~~~~~~--tv~e~l~~~~~~ 155 (601)
.|++|+ ||||+++.++.++ ..++.|++.+.+.|..... ++....+|++ +|.++.......
T Consensus 173 aG~TGS-------GKSt~L~~li~sLl~~~~p~~v~l~liDpK~~e----------l~~~~~lPhl~~~Vvtd~~~a~~~ 235 (512)
T 2ius_A 173 AGTTGS-------GASVGVNAMILSMLYKAQPEDVRFIMIDPKMLE----------LSVYEGIPHLLTEVVTDMKDAANA 235 (512)
T ss_dssp ECCTTS-------SHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSG----------GGGGTTCTTBSSSCBCSHHHHHHH
T ss_pred ECCCCC-------CHHHHHHHHHHHHHHhCCCceEEEEEECCchhh----------hhhhccCCcccceeecCHHHHHHH
Confidence 899999 5555666666555 4556788888887764311 2221112222 222333333333
Q ss_pred cCCChHHHHHHHHHHHHHcCCCcccC---CccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCc
Q psy7365 156 KQVPKDLAQLEISNMIGDLGIPHKRT---SLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSR 232 (601)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~~gl~~~~~---~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~ 232 (601)
.+....++++|. +++...|+.+..+ +....+|+||+|+... |- | .... ..++++
T Consensus 236 L~~~~~EmerR~-~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~---~~--p----g~~~-----~~~a~~-------- 292 (512)
T 2ius_A 236 LRWCVNEMERRY-KLMSALGVRNLAGYNEKIAEADRMMRPIPDPY---WK--P----GDSM-----DAQHPV-------- 292 (512)
T ss_dssp HHHHHHHHHHHH-HHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTT---C--------------------CCB--------
T ss_pred HHHHHHHHHHHH-HHHHHcCCccHHHHHHHHHHHhhcCCcccccc---cc--c----ccch-----hccccc--------
Confidence 333346677764 7889999876532 2335789999987421 10 0 0000 000000
Q ss_pred chhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCc-EEEEecCCCCCCHHHHHHHHHHHHHHhhhccc
Q psy7365 233 DDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAS-TVILDEPTSGVDPYSRRSIWELLIKVYYASHS 311 (601)
Q Consensus 233 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~ 311 (601)
+ ...|. ++++||+++-++.. ...+.+.+.++.+.. .
T Consensus 293 ------l-----------------------------------~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~g-R 329 (512)
T 2ius_A 293 ------L-----------------------------------KKEPYIVVLVDEFADLMMTV-GKKVEELIARLAQKA-R 329 (512)
T ss_dssp ------C-----------------------------------CCCCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHC-G
T ss_pred ------c-----------------------------------ccCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHh-h
Confidence 0 01256 78899999888743 344555555553322 2
Q ss_pred cCCcEEEEEecchh-------HHHhcCCEEEEe
Q psy7365 312 LSGRTVILTTHYMD-------EADLLGDRIAII 337 (601)
Q Consensus 312 ~~G~TVI~~tHdl~-------~~~~l~Drv~vL 337 (601)
..|.++|++||+.+ ....++.|+++-
T Consensus 330 a~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lr 362 (512)
T 2ius_A 330 AAGIHLVLATQRPSVDVITGLIKANIPTRIAFT 362 (512)
T ss_dssp GGTEEEEEEESCCCTTTSCHHHHHHCCEEEEEC
T ss_pred hCCcEEEEEecCCccccccHHHHhhcCCeEEEE
Confidence 34999999999987 455677777664
No 233
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.19 E-value=5.7e-07 Score=94.81 Aligned_cols=80 Identities=15% Similarity=0.075 Sum_probs=48.8
Q ss_pred ChHHHHHHHHHHHHh-------CCCCEEEEECCCCCCCHHH------------HHHHHHHHHHHHh-CCcEEEEEccChh
Q psy7365 432 SGGNKRKLSTAIALL-------GNTPLIFLDEPTSGMDPGA------------RRFLWTCIERAVS-EGRCVILTSHNME 491 (601)
Q Consensus 432 SgGqkQRl~lA~AL~-------~~P~lLlLDEPTsGLD~~~------------~~~i~~lL~~l~~-~G~tVllsTHdl~ 491 (601)
|.+++|++.++++++ .+|+++|+||||+++|+.. .++++..|+++++ .|+|||+++|...
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~ 287 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA 287 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence 345666666666666 7999999999999999862 3556666666654 4999999999988
Q ss_pred HHHhhCCEEEEEeCCEEEEe
Q psy7365 492 ECEALCTKLTIMVNGQFTCL 511 (601)
Q Consensus 492 e~~~l~drv~iL~~G~iv~~ 511 (601)
.....++.......|+++..
T Consensus 288 ~~~~~~~~~~~~~~G~~l~~ 307 (349)
T 1pzn_A 288 RPDAFFGDPTRPIGGHILAH 307 (349)
T ss_dssp --------------CCCCCT
T ss_pred ccccccCCccccCCcceEee
Confidence 77655555555566665544
No 234
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.18 E-value=9.8e-08 Score=94.21 Aligned_cols=98 Identities=14% Similarity=0.149 Sum_probs=70.6
Q ss_pred ccccccCCCCcccCCCCCH----HHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHh
Q psy7365 371 KSYIGYCPQFDALNDRLTP----REHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL 446 (601)
Q Consensus 371 ~~~ig~v~Q~~~l~~~lTv----~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~ 446 (601)
+..++|+||++.+|+.+++ .|++.++..++|.+. +.+++++
T Consensus 61 ~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~yg~~~----~~v~~~l------------------------------- 105 (219)
T 1s96_A 61 VHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYGTSR----EAIEQVL------------------------------- 105 (219)
T ss_dssp CBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEH----HHHHHHH-------------------------------
T ss_pred ccCceEEECCHHHHHHHHhcCHHHHHHHHHhccCCCCH----HHHHHHH-------------------------------
Confidence 4569999998877766666 455444333333221 1233333
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHHh
Q psy7365 447 GNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKY 521 (601)
Q Consensus 447 ~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~~ 521 (601)
..++++||| ||+.+++.+++.+. ++.||+++||++++++. |+ +.+| .++++++.+++
T Consensus 106 ~~G~illLD-----LD~~~~~~i~~~l~----~~~tI~i~th~~~~l~~---Rl--~~rG----~~~~e~i~~rl 162 (219)
T 1s96_A 106 ATGVDVFLD-----IDWQGAQQIRQKMP----HARSIFILPPSKIELDR---RL--RGRG----QDSEEVIAKRM 162 (219)
T ss_dssp TTTCEEEEE-----CCHHHHHHHHHHCT----TCEEEEEECSSHHHHHH---HH--HTTS----CSCHHHHHHHH
T ss_pred hcCCeEEEE-----ECHHHHHHHHHHcc----CCEEEEEECCCHHHHHH---HH--HHcC----CCCHHHHHHHH
Confidence 336999999 99999999999876 58999999999999887 43 6777 68999988765
No 235
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.14 E-value=6.2e-07 Score=90.79 Aligned_cols=60 Identities=17% Similarity=0.131 Sum_probs=50.8
Q ss_pred HHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeC
Q psy7365 438 KLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVN 505 (601)
Q Consensus 438 Rl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~ 505 (601)
|++||++|..+|+++++|||| |+.+...+ ++. ...|.+|+++||+.+ +...|||+++|..
T Consensus 88 ~~~la~aL~~~p~illlDEp~---D~~~~~~~---l~~-~~~g~~vl~t~H~~~-~~~~~dri~~l~~ 147 (261)
T 2eyu_A 88 ADALRAALREDPDVIFVGEMR---DLETVETA---LRA-AETGHLVFGTLHTNT-AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHHHHHHHCCSEEEESCCC---SHHHHHHH---HHH-HHTTCEEEEEECCSS-HHHHHHHHHHTSC
T ss_pred HHHHHHHHhhCCCEEEeCCCC---CHHHHHHH---HHH-HccCCEEEEEeCcch-HHHHHHHHhhhcC
Confidence 799999999999999999999 99886544 443 356999999999988 6788999988754
No 236
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.12 E-value=6.9e-08 Score=99.92 Aligned_cols=89 Identities=13% Similarity=0.092 Sum_probs=68.5
Q ss_pred hhhcccccccccCCCccceeecceEEe-------------------ec------ccCCCCCCCccccchhhhHHHhccCC
Q psy7365 50 SLFESLSENRDKLGIDSYGISDTSLEE-------------------QP------LGPSGITLGLHTLGLEFVSRSMLMGM 104 (601)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl 104 (601)
+.+++|++.|+ ++++++||.+ .+ +||||| |||| ++ ++|+|+
T Consensus 38 i~~~~v~~~y~------~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~Gs--GKST-----l~-~~L~~~ 103 (308)
T 1sq5_A 38 LSLEEVAEIYL------PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAV--GKST-----TA-RVLQAL 103 (308)
T ss_dssp CCHHHHHHTHH------HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTS--SHHH-----HH-HHHHHH
T ss_pred cchHhHHHHHH------HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCC--CHHH-----HH-HHHHHH
Confidence 45899999983 4788888876 32 999999 4554 44 699999
Q ss_pred CC--CCeeEEEE---ccccCCCchHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhc
Q psy7365 105 LP--VSSGTAKI---YDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK 156 (601)
Q Consensus 105 ~~--~~~G~v~~---~g~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~ 156 (601)
++ |++|+|.+ +|.... . ..++.+|++ |...+++.+++.+++.+...+.
T Consensus 104 l~~~~~~G~i~vi~~d~~~~~--~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 104 LSRWPEHRRVELITTDGFLHP--N-QVLKERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp HTTSTTCCCEEEEEGGGGBCC--H-HHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred HhhCCCCCeEEEEecCCccCc--H-HHHHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 98 99999999 887642 1 234567888 8888888899999998865543
No 237
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.11 E-value=3.4e-09 Score=107.54 Aligned_cols=133 Identities=9% Similarity=-0.018 Sum_probs=87.7
Q ss_pred hhhhhcccccccccCCCccceeecceEEeec----ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365 48 YVSLFESLSENRDKLGIDSYGISDTSLEEQP----LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D 122 (601)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~ 122 (601)
....++++.+.|+.. .+++++++++.+ +||||+ ||||| .++|+|.++ .|.|.++|.++.. .
T Consensus 48 ~~~~l~~l~~~~~~~----~~l~~~~~~~~~gvll~Gp~Gt--GKTtl------~~~i~~~~~--~~~i~~~~~~~~~~~ 113 (278)
T 1iy2_A 48 AKEELKEIVEFLKNP----SRFHEMGARIPKGVLLVGPPGV--GKTHL------ARAVAGEAR--VPFITASGSDFVEMF 113 (278)
T ss_dssp HHHHHHHHHHHHHCH----HHHHHTTCCCCCEEEEECCTTS--SHHHH------HHHHHHHTT--CCEEEEEHHHHHHST
T ss_pred HHHHHHHHHHHHHCH----HHHHHcCCCCCCeEEEECCCcC--hHHHH------HHHHHHHcC--CCEEEecHHHHHHHH
Confidence 344567777776543 478889888865 999999 56654 468888875 7999999876532 1
Q ss_pred hHHhcccEEEEccCCC-CCCCCCHHHHHHHhHhhcC----CChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhc
Q psy7365 123 MTTIRRSLGVCPQYNA-LFDKLTVEEHMWFYSQLKQ----VPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDN 197 (601)
Q Consensus 123 ~~~~~~~ig~v~Q~~~-~~~~~tv~e~l~~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~ 197 (601)
....++.++++||... .++.+++.|++.......+ ...++....+.++ ..+|||||+||+.+
T Consensus 114 ~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~l-------------l~~lsgg~~~~~~i 180 (278)
T 1iy2_A 114 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL-------------LVEMDGFEKDTAIV 180 (278)
T ss_dssp TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHH-------------HHHHTTCCTTCCEE
T ss_pred hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHH-------------HHHHhCCCCCCCEE
Confidence 1122345788999864 6777888888853322111 1122223333333 35689999999999
Q ss_pred hhhhcchhhH
Q psy7365 198 VKVWFNNKAW 207 (601)
Q Consensus 198 ~~~~~~~~~~ 207 (601)
+++..++|..
T Consensus 181 ~~a~t~~p~~ 190 (278)
T 1iy2_A 181 VMAATNRPDI 190 (278)
T ss_dssp EEEEESCTTS
T ss_pred EEEecCCchh
Confidence 9998888764
No 238
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.08 E-value=3.2e-07 Score=90.03 Aligned_cols=59 Identities=25% Similarity=0.191 Sum_probs=40.6
Q ss_pred CCcEEEEecCCCCC--CHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhH--------HHhcCCEEEEecC
Q psy7365 277 PASTVILDEPTSGV--DPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDE--------ADLLGDRIAIIAA 339 (601)
Q Consensus 277 ~~~~liLDEPtsgL--D~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~--------~~~l~Drv~vL~~ 339 (601)
+|+++++|+|++.+ |+..++.+...+.++. +..|.|||+++|.... +...||.++.+..
T Consensus 128 ~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~----~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 128 NAKRVVVDSVTTLYINKPAMARSIILQLKRVL----AGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp TCCEEEEETSGGGTTTCGGGHHHHHHHHHHHH----HHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred CCCEEEECCchHhhcCCHHHHHHHHHHHHHHH----HHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 36899999999887 6543333433344332 2458999999998776 4578899999864
No 239
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.07 E-value=8.6e-09 Score=102.88 Aligned_cols=133 Identities=9% Similarity=-0.018 Sum_probs=86.9
Q ss_pred hhhhhcccccccccCCCccceeecceEEeec----ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365 48 YVSLFESLSENRDKLGIDSYGISDTSLEEQP----LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D 122 (601)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~ 122 (601)
....++++.+.|+.. .+++++++++.+ +||||+ ||||| .++|+|.+. .|.+.++|.++.. .
T Consensus 24 ~~~~l~~l~~~~~~~----~~~~~~~~~~~~g~ll~G~~G~--GKTtl------~~~i~~~~~--~~~i~~~~~~~~~~~ 89 (254)
T 1ixz_A 24 AKEELKEIVEFLKNP----SRFHEMGARIPKGVLLVGPPGV--GKTHL------ARAVAGEAR--VPFITASGSDFVEMF 89 (254)
T ss_dssp HHHHHHHHHHHHHCH----HHHHHTTCCCCSEEEEECCTTS--SHHHH------HHHHHHHTT--CCEEEEEHHHHHHSC
T ss_pred HHHHHHHHHHHHHCH----HHHHHcCCCCCCeEEEECCCCC--CHHHH------HHHHHHHhC--CCEEEeeHHHHHHHH
Confidence 344577787776543 478888888765 999999 56654 468888875 7999999876521 1
Q ss_pred hHHhcccEEEEccCCC-CCCCCCHHHHHHHhHhhcC----CChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhc
Q psy7365 123 MTTIRRSLGVCPQYNA-LFDKLTVEEHMWFYSQLKQ----VPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDN 197 (601)
Q Consensus 123 ~~~~~~~ig~v~Q~~~-~~~~~tv~e~l~~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~ 197 (601)
....++.++++||... .++.+++.|++.......+ ...++..+.+.++ ..+|||||+||+.+
T Consensus 90 ~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~l-------------l~~l~g~~~~~~~i 156 (254)
T 1ixz_A 90 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL-------------LVEMDGFEKDTAIV 156 (254)
T ss_dssp TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHH-------------HHHHHTCCTTCCEE
T ss_pred hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHH-------------HHHHhCCCCCCCEE
Confidence 1122345788899864 6677888888843322111 1122222333333 34688999999999
Q ss_pred hhhhcchhhH
Q psy7365 198 VKVWFNNKAW 207 (601)
Q Consensus 198 ~~~~~~~~~~ 207 (601)
+++..++|..
T Consensus 157 ~~a~t~~p~~ 166 (254)
T 1ixz_A 157 VMAATNRPDI 166 (254)
T ss_dssp EEEEESCGGG
T ss_pred EEEccCCchh
Confidence 9999988764
No 240
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.02 E-value=1.2e-07 Score=91.47 Aligned_cols=78 Identities=10% Similarity=-0.016 Sum_probs=54.1
Q ss_pred ccccCcCChHHHHHH-HHHH---HHhCCCCEEEEEC--CCCCCCHHHHHHHHHHHHHHHhCCcEEEE----EccCh--hH
Q psy7365 425 DREVRTLSGGNKRKL-STAI---ALLGNTPLIFLDE--PTSGMDPGARRFLWTCIERAVSEGRCVIL----TSHNM--EE 492 (601)
Q Consensus 425 ~~~~~~LSgGqkQRl-~lA~---AL~~~P~lLlLDE--PTsGLD~~~~~~i~~lL~~l~~~G~tVll----sTHdl--~e 492 (601)
.++...+|+|||+++ ++++ |++++|+++|||| |+..+|+...+.+.+++. +..++|+ +||+. .+
T Consensus 78 ~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~----~~~~~ilgti~vsh~~~~~~ 153 (189)
T 2i3b_A 78 GQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS----TPGTIILGTIPVPKGKPLAL 153 (189)
T ss_dssp SSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH----CSSCCEEEECCCCCSSCCTT
T ss_pred ceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh----CCCcEEEEEeecCCCCchHH
Confidence 445567999999888 4444 5799999999999 899999976666655554 4445553 34986 55
Q ss_pred HHhhCCEEEEEeCCEEEE
Q psy7365 493 CEALCTKLTIMVNGQFTC 510 (601)
Q Consensus 493 ~~~l~drv~iL~~G~iv~ 510 (601)
++++|+ +.+|+++.
T Consensus 154 vd~i~~----~~~~~i~~ 167 (189)
T 2i3b_A 154 VEEIRN----RKDVKVFN 167 (189)
T ss_dssp HHHHHT----TCCSEEEE
T ss_pred HHHHee----cCCcEEEE
Confidence 555444 46666654
No 241
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.01 E-value=1.2e-05 Score=78.56 Aligned_cols=60 Identities=17% Similarity=0.249 Sum_probs=41.1
Q ss_pred CCCCEEEEECCCCCCCHH-------H-----HHHHHHHHHHHHhC-CcEEEEEccChhHHHh------------------
Q psy7365 447 GNTPLIFLDEPTSGMDPG-------A-----RRFLWTCIERAVSE-GRCVILTSHNMEECEA------------------ 495 (601)
Q Consensus 447 ~~P~lLlLDEPTsGLD~~-------~-----~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~------------------ 495 (601)
++|+++++|||++.+|+. + ...++..|++++++ |+|||+++|...+.+.
T Consensus 118 ~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~ 197 (243)
T 1n0w_A 118 SRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIA 197 (243)
T ss_dssp SCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------C
T ss_pred CCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhh
Confidence 689999999999999985 3 34556666666544 9999999998876654
Q ss_pred -hCCEEEEEeCC
Q psy7365 496 -LCTKLTIMVNG 506 (601)
Q Consensus 496 -l~drv~iL~~G 506 (601)
+||++++|++|
T Consensus 198 ~~~d~vi~l~~~ 209 (243)
T 1n0w_A 198 HASTTRLYLRKG 209 (243)
T ss_dssp CTTCEEEEEEEC
T ss_pred hcCcEEEEEEEc
Confidence 89999999875
No 242
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.97 E-value=3.9e-06 Score=80.28 Aligned_cols=70 Identities=13% Similarity=-0.035 Sum_probs=56.6
Q ss_pred HHHHHcCCCcc-cccccCcCChHHHHH-HHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcE
Q psy7365 413 ESLNKFALGHY-SDREVRTLSGGNKRK-LSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC 482 (601)
Q Consensus 413 ~lLe~~~L~~~-~~~~~~~LSgGqkQR-l~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~t 482 (601)
++++..++... ...++..+|+||+|| +..+++++.+|+++++|||||++|+.+..++++.|.++..+|.|
T Consensus 131 ~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 131 EWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp HHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred HHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 44556666543 356788899999999 89999999999999999999999999999999999998766644
No 243
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.97 E-value=1.6e-06 Score=91.74 Aligned_cols=59 Identities=17% Similarity=0.135 Sum_probs=49.7
Q ss_pred HHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCC
Q psy7365 440 STAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNG 506 (601)
Q Consensus 440 ~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G 506 (601)
+||+||.++|++|++|||| |++. ++.+.++++.|.+|++|+|+.+.+ ..|||++.|..|
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~----~~~~~~~~~~G~~vl~t~H~~~~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLET----IRLALTAAETGHLVFGTLHTTSAA-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHH----HHHHHHHHHTTCEEEEEESCSSHH-HHHHHHHHTSCH
T ss_pred HHHHHhhhCcCEEecCCCC---CHHH----HHHHHHHHhcCCEEEEEEccChHH-HHHHHHhhhcCc
Confidence 9999999999999999999 6555 444445567799999999999988 779999988554
No 244
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.87 E-value=2.7e-05 Score=80.10 Aligned_cols=57 Identities=16% Similarity=0.163 Sum_probs=42.2
Q ss_pred hhhcccccccccCCCccceeecceEEeec-----ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC
Q psy7365 50 SLFESLSENRDKLGIDSYGISDTSLEEQP-----LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT 121 (601)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~ 121 (601)
..++++++.|+... ++++|+ .+ +||||+ ||||++ ..|+|++++..|+|.+.|.++..
T Consensus 77 ~~~~~l~~~~~~~~------~~i~~~-~~~~i~i~g~~G~-------GKTT~~-~~la~~~~~~~~~v~l~~~d~~~ 138 (295)
T 1ls1_A 77 TVYEALKEALGGEA------RLPVLK-DRNLWFLVGLQGS-------GKTTTA-AKLALYYKGKGRRPLLVAADTQR 138 (295)
T ss_dssp HHHHHHHHHTTSSC------CCCCCC-SSEEEEEECCTTT-------THHHHH-HHHHHHHHHTTCCEEEEECCSSC
T ss_pred HHHHHHHHHHCCCC------ceeecC-CCeEEEEECCCCC-------CHHHHH-HHHHHHHHHcCCeEEEecCCccc
Confidence 45788888875421 667776 33 899999 445555 47899999999999999888743
No 245
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.85 E-value=6.8e-08 Score=95.15 Aligned_cols=58 Identities=12% Similarity=0.060 Sum_probs=23.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEE
Q psy7365 277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRI 334 (601)
Q Consensus 277 ~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv 334 (601)
+|+..+++|++.+.|..+...+.+.|.+......+......+++.|+++++....+++
T Consensus 148 ~~~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~ 205 (231)
T 3lnc_A 148 PPSMEELRRRLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNI 205 (231)
T ss_dssp CSCHHHHHHC--------------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHH
Confidence 4556678888888887777666665554322111122345666777777666554443
No 246
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.84 E-value=8.9e-06 Score=76.49 Aligned_cols=47 Identities=19% Similarity=0.221 Sum_probs=42.1
Q ss_pred CCCCEEEEECCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHH
Q psy7365 447 GNTPLIFLDEPTS-GMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC 493 (601)
Q Consensus 447 ~~P~lLlLDEPTs-GLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~ 493 (601)
.+|++|+||||++ ++|+..+..+++++.+..++|+++|++||...+.
T Consensus 99 ~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 99 LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence 4899999999985 9999999999999998888899999999987543
No 247
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.81 E-value=1.4e-08 Score=98.29 Aligned_cols=50 Identities=16% Similarity=0.083 Sum_probs=33.9
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecC
Q psy7365 277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAA 339 (601)
Q Consensus 277 ~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~ 339 (601)
+|++++|||||+++|..+.+.+.+.|.+... +. ...| + . ..+|+++++++
T Consensus 124 ~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~------~~---~~a~--~-~-~~~D~iivnd~ 173 (198)
T 1lvg_A 124 PPSLDVLEQRLRLRNTETEESLAKRLAAART------DM---ESSK--E-P-GLFDLVIINDD 173 (198)
T ss_dssp CSCHHHHHHHHHHHTCSCHHHHHHHHHHHHH------HT---TGGG--S-T-TTCSEEEECSS
T ss_pred CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHH------HH---HHhh--c-c-CCceEEEECCC
Confidence 4678889999999999888888887776521 11 1224 1 1 56888877653
No 248
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.71 E-value=3.3e-07 Score=88.85 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=24.7
Q ss_pred ccCCCCCCCccccchhhhHHHhccCCCCC---CeeEEEEccccC
Q psy7365 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPV---SSGTAKIYDHDI 119 (601)
Q Consensus 79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~---~~G~v~~~g~~~ 119 (601)
+||||| ||||| .++|+|+++| +.|.|.++|..+
T Consensus 28 ~G~sGs--GKSTl------~~~l~~~~~~~g~~~g~v~~d~~~~ 63 (208)
T 3c8u_A 28 SGAPGS--GKSTL------SNPLAAALSAQGLPAEVVPMDGFHL 63 (208)
T ss_dssp ECCTTS--CTHHH------HHHHHHHHHHTTCCEEEEESGGGBC
T ss_pred ECCCCC--CHHHH------HHHHHHHHhhcCCceEEEecCCCcC
Confidence 899999 56654 4699999986 467777766654
No 249
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.68 E-value=2.1e-05 Score=81.02 Aligned_cols=63 Identities=17% Similarity=0.146 Sum_probs=40.6
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEE-EecchhHHHhcCCEEEEecCCcccc
Q psy7365 278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVIL-TTHYMDEADLLGDRIAIIAAGKLQC 344 (601)
Q Consensus 278 ~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~-~tHdl~~~~~l~Drv~vL~~GkIv~ 344 (601)
++++|+| |+|+|+.....+.++.+-+. . ....+..+++ ++|..+.+.+.++++..++.+.++.
T Consensus 183 ~dlvIiD--T~G~~~~~~~~~~el~~~l~-~-~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 183 YDHVFVD--TAGRNFKDPQYIDELKETIP-F-ESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp SSEEEEE--CCCCCTTSHHHHHHHHHHSC-C-CTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred CCEEEEe--CCCCChhhHHHHHHHHHHHh-h-cCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 6999999 89999887766665544321 0 0112334444 3899888888888876555555443
No 250
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.68 E-value=2.9e-06 Score=93.03 Aligned_cols=74 Identities=20% Similarity=0.247 Sum_probs=56.7
Q ss_pred ccccCcCChHHHHHHHHHHHHh--C---------------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEc
Q psy7365 425 DREVRTLSGGNKRKLSTAIALL--G---------------NTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTS 487 (601)
Q Consensus 425 ~~~~~~LSgGqkQRl~lA~AL~--~---------------~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsT 487 (601)
++..+.+||||+|-.-+|++.+ . .=.+++|||. +-+|....+..+++++++ |.=+|++|
T Consensus 374 s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiat 449 (483)
T 3euj_A 374 RAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAA 449 (483)
T ss_dssp ECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEE
T ss_pred ecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEEC
Confidence 3457899999999655554432 1 2368999999 999999999999999987 77788888
Q ss_pred cChhHHHhhCCEEEEEe
Q psy7365 488 HNMEECEALCTKLTIMV 504 (601)
Q Consensus 488 Hdl~e~~~l~drv~iL~ 504 (601)
=+ .+..++|.++.+.
T Consensus 450 P~--~i~p~v~~~~~~~ 464 (483)
T 3euj_A 450 PE--NISPERGTTYKLV 464 (483)
T ss_dssp SS--SCCCSSSEEEECC
T ss_pred cc--hhhhccCceEEEE
Confidence 77 5666677776553
No 251
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.66 E-value=2.6e-07 Score=91.93 Aligned_cols=100 Identities=11% Similarity=0.041 Sum_probs=69.9
Q ss_pred cccccCCCCcccCCCCCHHHHHHHhHH--------hcCCChhHHHHHHHHHHH--HcC------------CCcccccccC
Q psy7365 372 SYIGYCPQFDALNDRLTPREHLEFYSR--------VRNLPSVLLNTIVNESLN--KFA------------LGHYSDREVR 429 (601)
Q Consensus 372 ~~ig~v~Q~~~l~~~lTv~E~L~~~~~--------~~g~~~~~~~~~~~~lLe--~~~------------L~~~~~~~~~ 429 (601)
..+++++|+..+++..++.+++..... +.+.+... ..++.+.+ .++ +....++++.
T Consensus 74 ~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~ 151 (246)
T 2bbw_A 74 EMAKQYIEKSLLVPDHVITRLMMSELENRRGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIH 151 (246)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHTCTTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCc
Confidence 345566777777888889998876321 22333222 12233322 233 3334578889
Q ss_pred cCChHHHHHHHHHHHH-hCCCCEEEEE----CCCCCCCHHHHHHHHHHHHHHHhCC
Q psy7365 430 TLSGGNKRKLSTAIAL-LGNTPLIFLD----EPTSGMDPGARRFLWTCIERAVSEG 480 (601)
Q Consensus 430 ~LSgGqkQRl~lA~AL-~~~P~lLlLD----EPTsGLD~~~~~~i~~lL~~l~~~G 480 (601)
+||| |+ +|+ +.+|++++|| |||+|+|+.++..+++.++++.+++
T Consensus 152 ~lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 152 PPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp TTTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred CCCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHHhH
Confidence 9999 66 677 9999999999 9999999999999999999887654
No 252
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.60 E-value=1.1e-06 Score=99.27 Aligned_cols=62 Identities=10% Similarity=0.201 Sum_probs=45.7
Q ss_pred CccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCe-eEEEEccccCCCchHHhcccEEEEccC
Q psy7365 64 IDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSS-GTAKIYDHDIRTDMTTIRRSLGVCPQY 136 (601)
Q Consensus 64 ~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~-G~v~~~g~~~~~~~~~~~~~ig~v~Q~ 136 (601)
+...+++++++.+.. +||||+ |||| +. ++|+|++++.. |.+.+++.+... ....++++|+.
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~Gt--GKTt-----la-r~ia~~l~~~~~~~~~~~~~~~~~----~~p~i~~~p~g 112 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGT--GKSM-----LG-QAMAELLPTETLEDILVFPNPEDE----NMPRIKTVPAC 112 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTS--SHHH-----HH-HHHHHTSCCSSCEEEEEECCTTCT----TSCEEEEEETT
T ss_pred CchhhHhhccccccCCCEEEEEeCCCC--CHHH-----HH-HHHhccCCcccCCeEEEeCCcccc----cCCcEEEEecc
Confidence 345578888887765 999999 4554 44 69999999887 888888876532 24468888875
Q ss_pred C
Q psy7365 137 N 137 (601)
Q Consensus 137 ~ 137 (601)
.
T Consensus 113 ~ 113 (604)
T 3k1j_A 113 Q 113 (604)
T ss_dssp H
T ss_pred h
Confidence 3
No 253
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.60 E-value=2.6e-07 Score=88.49 Aligned_cols=63 Identities=16% Similarity=0.104 Sum_probs=45.0
Q ss_pred ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCch-HHhcccEEEEccCCCCCCCCCHHHHHHHhH
Q psy7365 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDM-TTIRRSLGVCPQYNALFDKLTVEEHMWFYS 153 (601)
Q Consensus 79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~-~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~ 153 (601)
+||||| |||| + .++|+|+++ .+.+.|.++.... ...+.+++|+||++..|+.+++.+++.+..
T Consensus 13 ~Gp~Gs--GKST-----l-~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (205)
T 3tr0_A 13 SAPSGA--GKTS-----L-VRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHA 76 (205)
T ss_dssp ECCTTS--CHHH-----H-HHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEE
T ss_pred ECcCCC--CHHH-----H-HHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeee
Confidence 899999 5555 4 469999975 5777777664322 223567999999998888888777765433
No 254
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.56 E-value=3.6e-06 Score=90.88 Aligned_cols=101 Identities=11% Similarity=0.030 Sum_probs=58.4
Q ss_pred ccccccCCCCcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCC
Q psy7365 371 KSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTP 450 (601)
Q Consensus 371 ~~~ig~v~Q~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~ 450 (601)
...+++++|++.++..+|++|++.+.....+ ......+.+.++ ..++.+++||++||++++.+|+
T Consensus 74 ~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~---~~~~~~i~~~i~------------~~~~~~l~qr~~IaRal~~d~~ 138 (418)
T 2qag_C 74 VEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN---SNCWQPVIDYID------------SKFEDYLNAESRVNRRQMPDNR 138 (418)
T ss_dssp EEEEECC------CEEEEEEECC--------------CHHHHHHHH------------HHHHHHTTTSCC-CCCCCCCC-
T ss_pred eeeEEEEEecCCcccceeeeechhhhhhccc---hhhHHHHHHHHH------------HHHHHHHHHHHHHHHHhccCCC
Confidence 3568999999888888999999876433211 111111222222 1466778899999999999999
Q ss_pred ---EEEEECCC-CCCCHHHHHHHHHHHHHHHhCCcEEEEEccChh
Q psy7365 451 ---LIFLDEPT-SGMDPGARRFLWTCIERAVSEGRCVILTSHNME 491 (601)
Q Consensus 451 ---lLlLDEPT-sGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~ 491 (601)
+|++|||| .|||+... ++++.+.. +.+||++.|-.+
T Consensus 139 ~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~v~iIlVinK~D 178 (418)
T 2qag_C 139 VQCCLYFIAPSGHGLKPLDI----EFMKRLHE-KVNIIPLIAKAD 178 (418)
T ss_dssp CCEEEEECCC-CCSCCHHHH----HHHHHHTT-TSEEEEEEESTT
T ss_pred eeEEEEEecCcccCCCHHHH----HHHHHHhc-cCcEEEEEEccc
Confidence 99999999 69999873 44455543 677777777554
No 255
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.51 E-value=6.2e-05 Score=79.51 Aligned_cols=70 Identities=13% Similarity=0.030 Sum_probs=57.3
Q ss_pred cccccccCCCCcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHH
Q psy7365 370 QKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIAL 445 (601)
Q Consensus 370 ~~~~ig~v~Q~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL 445 (601)
..+.++++||+..+++..+++++ .+++.+..+..+.+.++++.+++.++.++++.+|| ||+||++||+++
T Consensus 259 ~~~~i~~v~q~~~l~dtpgv~e~-----~l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 259 TAARLYHFPHGGDVIDSPGVREF-----GLWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp CCCEEEECTTSCEEEECHHHHTC-----CCCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred EEEEEEEECCCCEecCcccHHHh-----hhcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 34578999999888888888884 23455555666778889999999999999999999 999999999764
No 256
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.51 E-value=6.7e-07 Score=94.50 Aligned_cols=91 Identities=7% Similarity=-0.097 Sum_probs=66.3
Q ss_pred ccccCcCChHHHHHHHHHHHHh-CCCCEEEEEC---CC------CCCCHHHHHHHHHHHHHHHh-CCcEEEEEccChhHH
Q psy7365 425 DREVRTLSGGNKRKLSTAIALL-GNTPLIFLDE---PT------SGMDPGARRFLWTCIERAVS-EGRCVILTSHNMEEC 493 (601)
Q Consensus 425 ~~~~~~LSgGqkQRl~lA~AL~-~~P~lLlLDE---PT------sGLD~~~~~~i~~lL~~l~~-~G~tVllsTHdl~e~ 493 (601)
++.+..+|+|++|+..+++++. .+|++++||| |+ .++|+..+..+++.|+++.+ .|.+|++++|. .+.
T Consensus 253 ~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~ 331 (365)
T 1lw7_A 253 TTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYL 331 (365)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHH
Confidence 3445567788888888888774 6999999999 65 58999999999999988754 48999999976 688
Q ss_pred HhhCCEEEEEeCCEEEEecCHHHHH
Q psy7365 494 EALCTKLTIMVNGQFTCLGSATHLK 518 (601)
Q Consensus 494 ~~l~drv~iL~~G~iv~~G~~~~L~ 518 (601)
+++|+++.+|++ ++..+++++|+
T Consensus 332 ~r~~~~i~~i~~--~l~~~~~~~~~ 354 (365)
T 1lw7_A 332 DRYNQVKAVIEK--VLNEEEISELQ 354 (365)
T ss_dssp HHHHHHHHHHHH--HTSCCCCSSCC
T ss_pred HHHHHHHHHHHH--HhcccchhHhh
Confidence 888888877754 44445555543
No 257
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.50 E-value=6.3e-06 Score=81.76 Aligned_cols=50 Identities=10% Similarity=-0.000 Sum_probs=32.0
Q ss_pred ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC---------chHHhcccEEEEccC
Q psy7365 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT---------DMTTIRRSLGVCPQY 136 (601)
Q Consensus 79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~---------~~~~~~~~ig~v~Q~ 136 (601)
+||||| |||| + .++|+|+++|++|.|.++|.++.. .....+..++++||+
T Consensus 33 ~GpnGs--GKST-----l-l~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 33 SGGNGA--GKST-----T-MAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp HSCCSH--HHHH-----H-HHHHHHHHSCCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred ECCCCC--CHHH-----H-HHHHhcccccCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 899999 4554 4 579999999999999999988732 122245689999984
No 258
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.44 E-value=4.4e-05 Score=78.95 Aligned_cols=33 Identities=18% Similarity=0.210 Sum_probs=26.7
Q ss_pred ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccC
Q psy7365 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDI 119 (601)
Q Consensus 79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~ 119 (601)
+||||+ ||||++ ..|+|.+++..|+|.+.+.|+
T Consensus 110 vG~~Gs-------GKTTl~-~~LA~~l~~~g~kV~lv~~D~ 142 (306)
T 1vma_A 110 VGVNGT-------GKTTSC-GKLAKMFVDEGKSVVLAAADT 142 (306)
T ss_dssp ECCTTS-------SHHHHH-HHHHHHHHHTTCCEEEEEECT
T ss_pred EcCCCC-------hHHHHH-HHHHHHHHhcCCEEEEEcccc
Confidence 999999 455555 478899999999999988775
No 259
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.42 E-value=1.3e-07 Score=98.25 Aligned_cols=115 Identities=10% Similarity=-0.039 Sum_probs=74.5
Q ss_pred ccccccC---CCCcccCCCCCHHHHHHHhH------HhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHH
Q psy7365 371 KSYIGYC---PQFDALNDRLTPREHLEFYS------RVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLST 441 (601)
Q Consensus 371 ~~~ig~v---~Q~~~l~~~lTv~E~L~~~~------~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~l 441 (601)
++.++++ +|+..++++.++.|+..+.. .++..+......+++.++..+++.+..++.. +||+||+||+..
T Consensus 74 ~~~l~~l~~~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~-~ls~g~~Q~~~a 152 (318)
T 1nij_A 74 EDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN-QFTIAQSQVGYA 152 (318)
T ss_dssp HHHHHHHHHHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH-HCHHHHHHHHTC
T ss_pred HHHHHHHHhHHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh-hchHHHHHHHhC
Confidence 4557777 67766666777777654320 0000000000011223345556665555544 799999999988
Q ss_pred HHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCC
Q psy7365 442 AIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCT 498 (601)
Q Consensus 442 A~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~d 498 (601)
+++++++|+++ ||| +.+.+.|++++ .+.+|+++||+..+++.+.|
T Consensus 153 d~ill~k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~~~~~l~~ 197 (318)
T 1nij_A 153 DRILLTKTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDIDLGLLFN 197 (318)
T ss_dssp SEEEEECTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCCCGGGGSC
T ss_pred CEEEEECcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCCCHHHHhC
Confidence 88888888887 888 78888888874 58999999998766666654
No 260
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.25 E-value=8.2e-05 Score=68.55 Aligned_cols=44 Identities=14% Similarity=0.243 Sum_probs=37.7
Q ss_pred HhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcE-EEEEccC
Q psy7365 445 LLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC-VILTSHN 489 (601)
Q Consensus 445 L~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~t-VllsTHd 489 (601)
++.+|++|++|||++ +|+..++.+++++.++.++|++ +|++||.
T Consensus 80 ~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 80 AAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp GGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 467899999999998 6666689999999998888888 8899985
No 261
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.24 E-value=9.6e-06 Score=83.27 Aligned_cols=90 Identities=18% Similarity=0.131 Sum_probs=58.4
Q ss_pred cccCCCCcccCCCCCHHHHHHHhH------HhcCCChhHHHHHHHHHHHHcCCC------c--ccccccCcCChHHHHHH
Q psy7365 374 IGYCPQFDALNDRLTPREHLEFYS------RVRNLPSVLLNTIVNESLNKFALG------H--YSDREVRTLSGGNKRKL 439 (601)
Q Consensus 374 ig~v~Q~~~l~~~lTv~E~L~~~~------~~~g~~~~~~~~~~~~lLe~~~L~------~--~~~~~~~~LSgGqkQRl 439 (601)
+.+|+|++.+++ .+.++|+.+.. ..+|.+.........+.++.+.-. . ........+||||+||+
T Consensus 65 ~~iv~~D~f~~~-~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~ 143 (290)
T 1odf_A 65 IGYASIDDFYLT-HEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRC 143 (290)
T ss_dssp EEEEEGGGGBCC-HHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEEC
T ss_pred EEEeccccccCC-hHHHHHHhccccccchhhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCcccccc
Confidence 445588876654 47788887642 112334332334456666665432 1 12344568999999999
Q ss_pred HHHHHHhCCCCEEEEECCCCCCCHH
Q psy7365 440 STAIALLGNTPLIFLDEPTSGMDPG 464 (601)
Q Consensus 440 ~lA~AL~~~P~lLlLDEPTsGLD~~ 464 (601)
.+|++..-+|+|+|+||||+|+|+.
T Consensus 144 ~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 144 PTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp SSCEEEESSCSEEEEEESSTTCCCC
T ss_pred ccccceEcCCCEEEEeCccccCCcc
Confidence 9873332289999999999999985
No 262
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.20 E-value=0.0006 Score=73.03 Aligned_cols=61 Identities=15% Similarity=0.148 Sum_probs=46.7
Q ss_pred CCCCEEEEECCCCCCCHHHH------------HHHHHHHHHHHhC-CcEEEEEccCh-------------------hHHH
Q psy7365 447 GNTPLIFLDEPTSGMDPGAR------------RFLWTCIERAVSE-GRCVILTSHNM-------------------EECE 494 (601)
Q Consensus 447 ~~P~lLlLDEPTsGLD~~~~------------~~i~~lL~~l~~~-G~tVllsTHdl-------------------~e~~ 494 (601)
.+|+++++||||+.+|+... .++++.|++++++ |.|||+++|.. ..++
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~ 351 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA 351 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence 67999999999999997532 5677888888755 99999999983 2357
Q ss_pred hhCCEEEEEeCCE
Q psy7365 495 ALCTKLTIMVNGQ 507 (601)
Q Consensus 495 ~l~drv~iL~~G~ 507 (601)
.+||.+++|++++
T Consensus 352 ~~ad~vl~L~~~~ 364 (400)
T 3lda_A 352 YSSTTRLGFKKGK 364 (400)
T ss_dssp HHCSEEEEEEECS
T ss_pred HhcceEEEEEecC
Confidence 7789999998763
No 263
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.12 E-value=0.0013 Score=71.47 Aligned_cols=98 Identities=9% Similarity=0.034 Sum_probs=69.6
Q ss_pred HHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHh--CCCCEEEEECCCCCCCH--------HHHHHHHHHHHHHHh
Q psy7365 409 TIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL--GNTPLIFLDEPTSGMDP--------GARRFLWTCIERAVS 478 (601)
Q Consensus 409 ~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~--~~P~lLlLDEPTsGLD~--------~~~~~i~~lL~~l~~ 478 (601)
.++.+.++.++..+..-.....+|.++.+ ..++.+. ++|+++++|+|+...++ ....++.+.|+.+++
T Consensus 274 ~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAk 351 (454)
T 2r6a_A 274 GKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALAR 351 (454)
T ss_dssp HHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 34455555554444333345679999887 4555555 78999999999987743 334667777787765
Q ss_pred C-CcEEEEEcc---------C--hh--------HHHhhCCEEEEEeCCEE
Q psy7365 479 E-GRCVILTSH---------N--ME--------ECEALCTKLTIMVNGQF 508 (601)
Q Consensus 479 ~-G~tVllsTH---------d--l~--------e~~~l~drv~iL~~G~i 508 (601)
+ |.+||+++| + +. .++..||.|++|+.++.
T Consensus 352 e~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 352 ELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp HHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred HhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 5 999999999 3 22 57889999999988764
No 264
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.10 E-value=0.00042 Score=72.87 Aligned_cols=65 Identities=17% Similarity=0.133 Sum_probs=40.7
Q ss_pred CcEEEEecCCCCC----------CH---HHHHHHHHHHHHHhhhccccCCcEEEEEecchhH----------------HH
Q psy7365 278 ASTVILDEPTSGV----------DP---YSRRSIWELLIKVYYASHSLSGRTVILTTHYMDE----------------AD 328 (601)
Q Consensus 278 ~~~liLDEPtsgL----------D~---~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~----------------~~ 328 (601)
|+++|+|||++.+ |+ ...+.+.+.++++.... +..|.|||+++|.... +.
T Consensus 140 ~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a-~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~ 218 (349)
T 2zr9_A 140 LDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL-NNSGTTAIFINELREKIGVMFGSPETTTGGKALK 218 (349)
T ss_dssp CSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHH-HHHTCEEEEEEECC-----------CCSSHHHHH
T ss_pred CCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHH-HHhCCEEEEEeccccccCcccCCCcccCCchHhh
Confidence 6899999999988 33 22234455555553211 2358999999996541 45
Q ss_pred hcCCEEEEecCCccc
Q psy7365 329 LLGDRIAIIAAGKLQ 343 (601)
Q Consensus 329 ~l~Drv~vL~~GkIv 343 (601)
..||.++.+..+++.
T Consensus 219 ~~ad~~l~lrr~~~~ 233 (349)
T 2zr9_A 219 FYASVRLDVRRIETL 233 (349)
T ss_dssp HHCSEEEEEEEEEEE
T ss_pred hccceEEEEEEeeee
Confidence 678877777665543
No 265
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.09 E-value=3.5e-05 Score=73.06 Aligned_cols=25 Identities=12% Similarity=0.319 Sum_probs=22.2
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHH
Q psy7365 278 ASTVILDEPTSGVDPYSRRSIWELLIK 304 (601)
Q Consensus 278 ~~~liLDEPtsgLD~~~~~~l~~~l~~ 304 (601)
|+++++| ||++|+.....+++.|.+
T Consensus 164 ~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 164 NGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp TTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 5789999 999999999999998865
No 266
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.06 E-value=1.9e-06 Score=81.58 Aligned_cols=104 Identities=11% Similarity=-0.037 Sum_probs=63.9
Q ss_pred cccccCCCCcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCccc--ccccCcCChHHHHHHHHHHHHhCCC
Q psy7365 372 SYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYS--DREVRTLSGGNKRKLSTAIALLGNT 449 (601)
Q Consensus 372 ~~ig~v~Q~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~--~~~~~~LSgGqkQRl~lA~AL~~~P 449 (601)
+.++|++|+.. +..++.+++.+........... ..++.+++.+++.... +.++..+|+|++||+.++|++..+|
T Consensus 53 ~~~~~~~~~~~--~~~~v~~~l~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~ 128 (191)
T 1zp6_A 53 RIDPWLPQSHQ--QNRMIMQIAADVAGRYAKEGYF--VILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGG 128 (191)
T ss_dssp CCCTTSSSHHH--HHHHHHHHHHHHHHHHHHTSCE--EEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCT
T ss_pred cccCCccchhh--hhHHHHHHHHHHHHHHhccCCe--EEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCC
Confidence 44789998754 4568888887654321000000 0011111122222222 4456789999999999999999999
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEc
Q psy7365 450 PLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTS 487 (601)
Q Consensus 450 ~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsT 487 (601)
+++ +|+..++.+++.+..+...+..+|.++
T Consensus 129 ~~l--------ld~~~~~~~~~~~~~l~~~~~~~i~t~ 158 (191)
T 1zp6_A 129 DSL--------SDPLVVADLHSQFADLGAFEHHVLPVS 158 (191)
T ss_dssp TSC--------CCHHHHHHHHHHTTCCGGGGGGEEECT
T ss_pred Ccc--------CCHHHHHHHHHHHhccCcccccEEECC
Confidence 876 699988888888877644333444444
No 267
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.99 E-value=5.3e-05 Score=81.79 Aligned_cols=162 Identities=14% Similarity=0.114 Sum_probs=98.2
Q ss_pred cchhHHHhcCCE--EEEecCCccccccCccccccccccccccccccC---CcccccccccCCCCcccCCCCCHHHHHHHh
Q psy7365 322 HYMDEADLLGDR--IAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMK---SAPQKSYIGYCPQFDALNDRLTPREHLEFY 396 (601)
Q Consensus 322 Hdl~~~~~l~Dr--v~vL~~GkIv~~G~~~lLk~~~g~g~~igld~~---~~~~~~~ig~v~Q~~~l~~~lTv~E~L~~~ 396 (601)
+++++...-+.. ++++|... .|++++++.-.+.. +.+.+.. ....++.++|++|++.+++.+|+.|++.|.
T Consensus 31 ~~vsl~i~~Gei~~vaLvG~nG---aGKSTLln~L~G~~-l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g 106 (427)
T 2qag_B 31 QLVNKSVSQGFCFNILCVGETG---LGKSTLMDTLFNTK-FEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFG 106 (427)
T ss_dssp HHHHHSCC-CCEEEEEEECSTT---SSSHHHHHHHHTSC-C-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCC
T ss_pred CCCceEecCCCeeEEEEECCCC---CCHHHHHHHHhCcc-ccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhh
Confidence 677777888888 88887522 56666655322221 1111111 112345799999999888889999988654
Q ss_pred HHhcC-CChh----HHHHHHHHHHHHc-CCCc----ccccc----c-------CcCChHHHHHHHHHHHHhCCCCEEEEE
Q psy7365 397 SRVRN-LPSV----LLNTIVNESLNKF-ALGH----YSDRE----V-------RTLSGGNKRKLSTAIALLGNTPLIFLD 455 (601)
Q Consensus 397 ~~~~g-~~~~----~~~~~~~~lLe~~-~L~~----~~~~~----~-------~~LSgGqkQRl~lA~AL~~~P~lLlLD 455 (601)
..... ..+. .....+.++|+.. ++.. ..+.+ + ..|+-.. +.++++|..+++++++|
T Consensus 107 ~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi 183 (427)
T 2qag_B 107 DQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPII 183 (427)
T ss_dssp C-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEE
T ss_pred hccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEE
Confidence 22100 0011 1233455566654 4431 12222 1 1455554 78999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHH-HHhCCcEEEEEccCh
Q psy7365 456 EPTSGMDPGARRFLWTCIER-AVSEGRCVILTSHNM 490 (601)
Q Consensus 456 EPTsGLD~~~~~~i~~lL~~-l~~~G~tVllsTHdl 490 (601)
|||..|.+.....+.+.|++ +...|.+|+.+|.|-
T Consensus 184 ~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d 219 (427)
T 2qag_B 184 AKADAISKSELTKFKIKITSELVSNGVQIYQFPTDD 219 (427)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC---
T ss_pred cchhccchHHHHHHHHHHHHHHHHcCCcEEecCCCc
Confidence 99999999999999999986 777899999998763
No 268
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.96 E-value=6.6e-07 Score=95.78 Aligned_cols=114 Identities=14% Similarity=0.074 Sum_probs=85.0
Q ss_pred cCCCCcccCCCCCHHHHH--HHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCC--CE
Q psy7365 376 YCPQFDALNDRLTPREHL--EFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNT--PL 451 (601)
Q Consensus 376 ~v~Q~~~l~~~lTv~E~L--~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P--~l 451 (601)
++++.++++...+..|++ .|...++... .++..++.. .+..+..+|+++ +| ++
T Consensus 88 ~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d---------~il~Vvd~~--~d~~i~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 88 TVFDIAGLTKGASTGVGLGNAFLSHVRAVD---------AIYQVVRAF--DDAEIIHVEGDV------------DPIRDL 144 (392)
T ss_dssp EEECTGGGCCCCCSSSSSCHHHHHHHTTCS---------EEEEEEECC--CTTCSSCCSSSS------------CHHHHH
T ss_pred EEEeccccccCCcHHHHHHHHHHHHHHHHH---------HHHHHHhcc--ccceeeeecccc------------Ccchhh
Confidence 566777777777766655 4444443321 122233332 245566677764 99 99
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHH-HhCCcEEEEEccChhHHHhhCCEEE-EEeCC-EEEEecCH
Q psy7365 452 IFLDEPTSGMDPGARRFLWTCIERA-VSEGRCVILTSHNMEECEALCTKLT-IMVNG-QFTCLGSA 514 (601)
Q Consensus 452 LlLDEPTsGLD~~~~~~i~~lL~~l-~~~G~tVllsTHdl~e~~~l~drv~-iL~~G-~iv~~G~~ 514 (601)
+++|||+.++|+..++..++.++.+ .+.|.||+ +|++.+++.+|+++. +|++| +++..|+.
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 9999999999999999999999998 66687864 999999999999999 99999 88876654
No 269
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.95 E-value=0.00037 Score=75.64 Aligned_cols=62 Identities=11% Similarity=-0.037 Sum_probs=43.0
Q ss_pred CCcEEEEecCCCCCCH--------HHHHHHHHHHHHHhhhccccCCcEEEEEec---------c--hh--------HHHh
Q psy7365 277 PASTVILDEPTSGVDP--------YSRRSIWELLIKVYYASHSLSGRTVILTTH---------Y--MD--------EADL 329 (601)
Q Consensus 277 ~~~~liLDEPtsgLD~--------~~~~~l~~~l~~l~~~~~~~~G~TVI~~tH---------d--l~--------~~~~ 329 (601)
+|+++|+|+++.-.++ .....+...|+.+. +..|++||+++| + .. .+..
T Consensus 313 ~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lA----ke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~ 388 (454)
T 2r6a_A 313 GLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALA----RELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQ 388 (454)
T ss_dssp CCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHH----HHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHH
T ss_pred CCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHH----HHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHh
Confidence 3689999999977642 23345555565552 235899999999 2 22 4677
Q ss_pred cCCEEEEecCCcc
Q psy7365 330 LGDRIAIIAAGKL 342 (601)
Q Consensus 330 l~Drv~vL~~GkI 342 (601)
.||.|+++..++.
T Consensus 389 ~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 389 DADIVAFLYRDDY 401 (454)
T ss_dssp HCSEEEEEEETTC
T ss_pred hCCEEEEEecccc
Confidence 8999999987664
No 270
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.93 E-value=0.00083 Score=69.48 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=38.6
Q ss_pred HhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhH
Q psy7365 445 LLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEE 492 (601)
Q Consensus 445 L~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e 492 (601)
+..+|+++|+|||++ ||+.++..+++.+.+.. .+.++|++||+.+.
T Consensus 131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~-~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 131 LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMSP 176 (354)
T ss_dssp ---CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSCS
T ss_pred cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc-CCCEEEEEeCCHHH
Confidence 788999999999999 99999999999998863 46899999999764
No 271
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.93 E-value=2.1e-05 Score=75.52 Aligned_cols=61 Identities=13% Similarity=0.038 Sum_probs=42.6
Q ss_pred ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHHhcccEEEEccCCCCCCCCCHHHHHHH
Q psy7365 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWF 151 (601)
Q Consensus 79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~ 151 (601)
+||||| ||||+ + ++|+|.+ |.+.++|.++.......+...|++||++..++.+++.+++..
T Consensus 35 ~G~~Gs--GKSTl-----~-~~L~~~~----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 95 (200)
T 4eun_A 35 MGVSGS--GKTTI-----A-HGVADET----GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMD 95 (200)
T ss_dssp ECCTTS--CHHHH-----H-HHHHHHH----CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred ECCCCC--CHHHH-----H-HHHHHhh----CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHH
Confidence 899999 55554 4 5788876 899999988764333333456889998766656666666544
No 272
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.90 E-value=4.5e-05 Score=80.76 Aligned_cols=108 Identities=14% Similarity=0.181 Sum_probs=55.8
Q ss_pred eecccCCCCCCCccccchhhhHHHhccCCCC-----------CCeeEEEEccccCCCchHHhcccEEEEccCCCCC-CC-
Q psy7365 76 EQPLGPSGITLGLHTLGLEFVSRSMLMGMLP-----------VSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALF-DK- 142 (601)
Q Consensus 76 ~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl~~-----------~~~G~v~~~g~~~~~~~~~~~~~ig~v~Q~~~~~-~~- 142 (601)
+.-+|++|+ ||||| . +.++|... |++|.+.++|.++. +....|++.|.|... ..
T Consensus 182 V~lvG~~na--GKSTL-----l-n~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~-----l~DT~G~i~~lp~~lve~f 248 (364)
T 2qtf_A 182 IGIVGYTNS--GKTSL-----F-NSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM-----LVDTVGFIRGIPPQIVDAF 248 (364)
T ss_dssp EEEECBTTS--SHHHH-----H-HHHHCC-----------CCSCEEEEEETTEEEE-----EEECCCBCSSCCGGGHHHH
T ss_pred EEEECCCCC--CHHHH-----H-HHHHCCCccccCCcccccCCEEEEEEECCEEEE-----EEeCCCchhcCCHHHHHHH
Confidence 445999999 56554 4 57777755 57899999886541 112345555433210 00
Q ss_pred CCHHHHHHHh---HhhcCC--Ch---HHHHHHHHHHHHHcCCCccc----CCccccCChHHHhhhh
Q psy7365 143 LTVEEHMWFY---SQLKQV--PK---DLAQLEISNMIGDLGIPHKR----TSLANTLSGGMQRKLD 196 (601)
Q Consensus 143 ~tv~e~l~~~---~~~~~~--~~---~~~~~~~~~~l~~~gl~~~~----~~~~~~LSgG~~qr~~ 196 (601)
.+..+++.-. ...... +. .+....+.++++.+++.+.. ..++..+|+|++|++.
T Consensus 249 ~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~ 314 (364)
T 2qtf_A 249 FVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLD 314 (364)
T ss_dssp HHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHH
T ss_pred HHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHH
Confidence 0011111000 000111 11 12223456778888876544 5567888989888765
No 273
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.86 E-value=0.00028 Score=74.81 Aligned_cols=59 Identities=19% Similarity=0.148 Sum_probs=47.5
Q ss_pred HHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEe
Q psy7365 438 KLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMV 504 (601)
Q Consensus 438 Rl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~ 504 (601)
+.+|+.+|..+|+++++|||+ |+... +..++. ...|.+|+.++|+.+ +...|||++.|.
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~~---~~~l~~-~~~g~~vi~t~H~~~-~~~~~~rl~~l~ 257 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLETV---ETALRA-AETGHLVFGTLHTNT-AIDTIHRIVDIF 257 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHHH---HHHHHH-HTTTCEEEECCCCCS-HHHHHHHHHHTS
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHHH---HHHHHH-HhcCCEEEEEECcch-HHHHHHHHHHhc
Confidence 469999999999999999999 77653 344544 356899999999966 888899987664
No 274
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.72 E-value=0.0025 Score=61.91 Aligned_cols=59 Identities=17% Similarity=0.117 Sum_probs=44.4
Q ss_pred CCCCEEEEECCCCCC--CHHHHHHHHHHHHHH-HhCCcEEEEEccChhH--------HHhhCCEEEEEeC
Q psy7365 447 GNTPLIFLDEPTSGM--DPGARRFLWTCIERA-VSEGRCVILTSHNMEE--------CEALCTKLTIMVN 505 (601)
Q Consensus 447 ~~P~lLlLDEPTsGL--D~~~~~~i~~lL~~l-~~~G~tVllsTHdl~e--------~~~l~drv~iL~~ 505 (601)
.+|+++++|+|++.+ |+..++++...+.++ ++.|.||++++|...+ ++.+||.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 379999999999988 664444444444444 5669999999999876 5788999999975
No 275
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.66 E-value=3.7e-05 Score=84.73 Aligned_cols=134 Identities=9% Similarity=-0.003 Sum_probs=85.1
Q ss_pred chhhhhcccccccccCCCccceeecceEEeec----ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc
Q psy7365 47 AYVSLFESLSENRDKLGIDSYGISDTSLEEQP----LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD 122 (601)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~ 122 (601)
.....++++.+.++.+ ..++++++.+.. .||+|+ ||||| . +.|+|... .|.+.++|.++...
T Consensus 38 ~~k~~l~~lv~~l~~~----~~~~~lg~~ip~GvLL~GppGt--GKTtL-----a-raIa~~~~--~~~i~i~g~~~~~~ 103 (499)
T 2dhr_A 38 EAKEELKEIVEFLKNP----SRFHEMGARIPKGVLLVGPPGV--GKTHL-----A-RAVAGEAR--VPFITASGSDFVEM 103 (499)
T ss_dssp HHHHHHHHHHHHHHCG----GGTTTTSCCCCSEEEEECSSSS--SHHHH-----H-HHHHHHTT--CCEEEEEGGGGTSS
T ss_pred HHHHHHHHHHHHhhch----hhhhhccCCCCceEEEECCCCC--CHHHH-----H-HHHHHHhC--CCEEEEehhHHHHh
Confidence 3445567776665443 267788887765 999999 56654 4 68888875 78999999876432
Q ss_pred -hHHhcccEEEEccCCC-CCCCCCHHHHHHHhHhhcC----CChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhh
Q psy7365 123 -MTTIRRSLGVCPQYNA-LFDKLTVEEHMWFYSQLKQ----VPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLD 196 (601)
Q Consensus 123 -~~~~~~~ig~v~Q~~~-~~~~~tv~e~l~~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~ 196 (601)
.....+.++.+||... ..+.+.+.|++.......+ ...++....+.+++. .||||++|+..
T Consensus 104 ~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~-------------~Ldg~~~~~~v 170 (499)
T 2dhr_A 104 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV-------------EMDGFEKDTAI 170 (499)
T ss_dssp CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH-------------HGGGCCSSCCC
T ss_pred hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH-------------HhcccccCccE
Confidence 2222345677888864 5666677777743221111 122333334444443 57899999988
Q ss_pred chhhhcchhhH
Q psy7365 197 NVKVWFNNKAW 207 (601)
Q Consensus 197 ~~~~~~~~~~~ 207 (601)
++.+..|+|..
T Consensus 171 iviAatn~p~~ 181 (499)
T 2dhr_A 171 VVMAATNRPDI 181 (499)
T ss_dssp EEEECCSCGGG
T ss_pred EEEEecCChhh
Confidence 88888888754
No 276
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.63 E-value=3.4e-05 Score=73.40 Aligned_cols=26 Identities=12% Similarity=0.249 Sum_probs=22.2
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHH
Q psy7365 278 ASTVILDEPTSGVDPYSRRSIWELLIKV 305 (601)
Q Consensus 278 ~~~liLDEPtsgLD~~~~~~l~~~l~~l 305 (601)
|++.++| ||++|+.....+++.|.+.
T Consensus 140 ~~~~~~d--~Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 140 NNLSFIE--TSALDSTNVEEAFKNILTE 165 (199)
T ss_dssp TTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCCeEEE--EeCCCCCCHHHHHHHHHHH
Confidence 4788999 9999999999998887654
No 277
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=96.38 E-value=0.00048 Score=74.18 Aligned_cols=82 Identities=21% Similarity=0.129 Sum_probs=58.9
Q ss_pred HHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEE-EccCh
Q psy7365 412 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL-TSHNM 490 (601)
Q Consensus 412 ~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVll-sTHdl 490 (601)
+.++..+++. ++++.+||+|++|++.+|++|+..|.++++ +++|+..+..+.++.+.+.+.|.++++ |+|.-
T Consensus 237 ~~lL~vvDls---~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g 309 (416)
T 1udx_A 237 RVLLYVLDAA---DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAVKALADALAREGLAVLPVSALTG 309 (416)
T ss_dssp SEEEEEEETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTC
T ss_pred HhhhEEeCCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHHHHHHHHHHhcCCeEEEEECCCc
Confidence 3345555665 667889999999999999999999999999 999998773333333444455766655 55666
Q ss_pred hHHHhhCCEE
Q psy7365 491 EECEALCTKL 500 (601)
Q Consensus 491 ~e~~~l~drv 500 (601)
+.++.+++.+
T Consensus 310 ~gi~eL~~~i 319 (416)
T 1udx_A 310 AGLPALKEAL 319 (416)
T ss_dssp TTHHHHHHHH
T ss_pred cCHHHHHHHH
Confidence 6666665544
No 278
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.32 E-value=0.0082 Score=62.96 Aligned_cols=75 Identities=15% Similarity=0.111 Sum_probs=52.4
Q ss_pred HHHHHHHhC--CCCEEEEECCCCCC----------CH---HHHHHHHHHHHHH----HhCCcEEEEEccChhH-------
Q psy7365 439 LSTAIALLG--NTPLIFLDEPTSGM----------DP---GARRFLWTCIERA----VSEGRCVILTSHNMEE------- 492 (601)
Q Consensus 439 l~lA~AL~~--~P~lLlLDEPTsGL----------D~---~~~~~i~~lL~~l----~~~G~tVllsTHdl~e------- 492 (601)
+.++.+++. +|+++++|||++.+ |+ ...+.+.+.++++ ++.|+|||+++|....
T Consensus 128 l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~ 207 (349)
T 2zr9_A 128 LEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGS 207 (349)
T ss_dssp HHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------
T ss_pred HHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCC
Confidence 446777764 49999999999998 33 2223445555554 4559999999997642
Q ss_pred ---------HHhhCCEEEEEeCCEEEEecC
Q psy7365 493 ---------CEALCTKLTIMVNGQFTCLGS 513 (601)
Q Consensus 493 ---------~~~l~drv~iL~~G~iv~~G~ 513 (601)
++.+||.++.++++++...|+
T Consensus 208 p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 208 PETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp --CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred CcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 567899999999887765554
No 279
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.28 E-value=0.0011 Score=69.08 Aligned_cols=135 Identities=9% Similarity=-0.043 Sum_probs=80.3
Q ss_pred cCCEEEEecCCccccccCccccc-------cccccccccccccCCcc-------cccccc--cCCCCcccCCCCCHHHHH
Q psy7365 330 LGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSAP-------QKSYIG--YCPQFDALNDRLTPREHL 393 (601)
Q Consensus 330 l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~~-------~~~~ig--~v~Q~~~l~~~lTv~E~L 393 (601)
-+..+++++... .|+++.++ +..++..+.+.|..... .++++| |++|...+++.+++++++
T Consensus 128 ~g~vi~lvG~nG---aGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 128 KPYVIMFVGFNG---SGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSEEEEEECCTT---SSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCC---CCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 456677776422 45554332 22334444444443211 123444 899998888889999999
Q ss_pred HHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHH
Q psy7365 394 EFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCI 473 (601)
Q Consensus 394 ~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL 473 (601)
.+.... +... -+++..|..+..+..+.+||+ +++++..++.+++||.+| | +.+.+.+
T Consensus 205 ~~~~~~-~~d~--------vliDtaG~~~~~~~l~~eL~~-------i~ral~~de~llvLDa~t-~------~~~~~~~ 261 (328)
T 3e70_C 205 QHAKAR-GIDV--------VLIDTAGRSETNRNLMDEMKK-------IARVTKPNLVIFVGDALA-G------NAIVEQA 261 (328)
T ss_dssp HHHHHH-TCSE--------EEEEECCSCCTTTCHHHHHHH-------HHHHHCCSEEEEEEEGGG-T------THHHHHH
T ss_pred HHHHhc-cchh--------hHHhhccchhHHHHHHHHHHH-------HHHHhcCCCCEEEEecHH-H------HHHHHHH
Confidence 764321 1110 023444554444455555553 889999999999999555 4 3555566
Q ss_pred HHHHh-CCcEEEEEccCh
Q psy7365 474 ERAVS-EGRCVILTSHNM 490 (601)
Q Consensus 474 ~~l~~-~G~tVllsTHdl 490 (601)
+.+.+ .+.|+|++||.-
T Consensus 262 ~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 262 RQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp HHHHHHSCCCEEEEECGG
T ss_pred HHHHHhcCCCEEEEeCcC
Confidence 66653 489999999953
No 280
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.18 E-value=0.00093 Score=69.40 Aligned_cols=72 Identities=10% Similarity=-0.004 Sum_probs=49.6
Q ss_pred ecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCch-----HHh-----cccEEEE
Q psy7365 70 SDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDM-----TTI-----RRSLGVC 133 (601)
Q Consensus 70 ~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~-----~~~-----~~~ig~v 133 (601)
++++|++.+ +||||+ ||||++. .|++.+.+..|+|.+.+.|+.... ... +..++++
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~-------GKTT~~~-~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vi 167 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGT-------GKTTSLA-KMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLV 167 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTS-------SHHHHHH-HHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEE
T ss_pred cCccccCCCCeEEEEECCCCC-------CHHHHHH-HHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEE
Confidence 577776544 899999 4555554 778999999999999998886432 122 5679999
Q ss_pred -ccCCCCCCCCCHHHHH
Q psy7365 134 -PQYNALFDKLTVEEHM 149 (601)
Q Consensus 134 -~Q~~~~~~~~tv~e~l 149 (601)
+|....++..++.+++
T Consensus 168 p~~~~~~~p~~~~~~~l 184 (320)
T 1zu4_A 168 KANKLNADPASVVFDAI 184 (320)
T ss_dssp CCSSTTCCHHHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHH
Confidence 7765555443444444
No 281
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.11 E-value=0.00036 Score=71.77 Aligned_cols=70 Identities=6% Similarity=-0.022 Sum_probs=52.3
Q ss_pred ccccCCCCcccC-----CCCCHHHHH--HHh------HHhcC-CChhHHHHHHHHHHHHcCCCc-ccccccCcCChHHHH
Q psy7365 373 YIGYCPQFDALN-----DRLTPREHL--EFY------SRVRN-LPSVLLNTIVNESLNKFALGH-YSDREVRTLSGGNKR 437 (601)
Q Consensus 373 ~ig~v~Q~~~l~-----~~lTv~E~L--~~~------~~~~g-~~~~~~~~~~~~lLe~~~L~~-~~~~~~~~LSgGqkQ 437 (601)
.+||++|.|.+. +.+|+ |++ .|. +++++ .+..+...++.++++.++|.+ ..++++..|||.++|
T Consensus 216 ~~g~v~d~pg~~~~~l~~~lt~-e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R 294 (302)
T 2yv5_A 216 KGSFVGDTPGFSKVEATMFVKP-REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEE 294 (302)
T ss_dssp TTEEEESSCCCSSCCGGGTSCG-GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTT
T ss_pred CCcEEEECcCcCcCcccccCCH-HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 689999998654 67899 777 332 12333 233334457899999999986 788999999998889
Q ss_pred HHHHHH
Q psy7365 438 KLSTAI 443 (601)
Q Consensus 438 Rl~lA~ 443 (601)
++.||+
T Consensus 295 ~~~~~~ 300 (302)
T 2yv5_A 295 IKELCR 300 (302)
T ss_dssp HHHHSS
T ss_pred HHHHhc
Confidence 998875
No 282
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.05 E-value=0.0078 Score=57.28 Aligned_cols=43 Identities=19% Similarity=0.284 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHH--HhcCCEEEEecC
Q psy7365 290 VDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEA--DLLGDRIAIIAA 339 (601)
Q Consensus 290 LD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~--~~l~Drv~vL~~ 339 (601)
++|..+..+++.+... .+.++|+.+|.+.+. ...||+++++..
T Consensus 88 ~~p~v~~~~~~~~~~~-------~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 88 LHPAIRERMKQKLAEQ-------TAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp HHHHHHHHHHHHHHTC-------CSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred cCHHHHHHHHHHHHhc-------CCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 4577777777666432 355888888988776 678899888864
No 283
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.97 E-value=0.0026 Score=73.73 Aligned_cols=77 Identities=12% Similarity=0.118 Sum_probs=63.3
Q ss_pred ccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEE-ccChhHHHhhCCEEE
Q psy7365 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTS-GMDPGARRFLWTCIERAVSEGRCVILT-SHNMEECEALCTKLT 501 (601)
Q Consensus 425 ~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTs-GLD~~~~~~i~~lL~~l~~~G~tVlls-THdl~e~~~l~drv~ 501 (601)
+.++.-+|.|+.+|..++..++.+++++|+|||.. ++|......+++.+.....+..+|++| ||+.+.+..+++...
T Consensus 185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~~~ 263 (773)
T 2xau_A 185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAP 263 (773)
T ss_dssp TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTSCC
T ss_pred CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcCCC
Confidence 45677899999999999999999999999999996 999887777776666654456788886 999998888877533
No 284
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=95.88 E-value=0.016 Score=60.69 Aligned_cols=41 Identities=10% Similarity=0.118 Sum_probs=31.7
Q ss_pred cEEEEe-cCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEe--cchh
Q psy7365 279 STVILD-EPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTT--HYMD 325 (601)
Q Consensus 279 ~~liLD-EPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~t--Hdl~ 325 (601)
-++++| +|..++|......+++.+.+.. .++++|++. ||+.
T Consensus 250 illV~D~s~~~~~~~~~~~~~~~~i~~~~------~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 250 IIYIFDPSEHCGFPLEEQIHLFEEVHGEF------KDLPFLVVINKIDVA 293 (357)
T ss_dssp EEEEECTTCTTSSCHHHHHHHHHHHHHHT------TTSCEEEEECCTTTC
T ss_pred EEEEEeCCccccCCHHHHHHHHHHHHHhc------CCCCEEEEEECcccC
Confidence 478899 9999999998887777776641 267888888 7764
No 285
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=95.82 E-value=6.9e-05 Score=78.78 Aligned_cols=60 Identities=20% Similarity=0.198 Sum_probs=38.5
Q ss_pred hhhhcccccccccCCCccceeecceEEeec---ccCCCCCCCccccchhhhHHHhccC--CCCCCeeEEEEccc
Q psy7365 49 VSLFESLSENRDKLGIDSYGISDTSLEEQP---LGPSGITLGLHTLGLEFVSRSMLMG--MLPVSSGTAKIYDH 117 (601)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~g~~~g~~~~g~~~~~~~~l~G--l~~~~~G~v~~~g~ 117 (601)
+..++++.+.++..+ ...+|+++++++.. +|++|+ ||| |++ +.|+| ++|+.+|.++-.+.
T Consensus 8 ~~~l~~~~~~~~~~~-~~~~l~~i~~~lp~I~vvG~~~s--GKS-----SLl-n~l~g~~~lp~~~~~vT~~p~ 72 (360)
T 3t34_A 8 VNKIQRACTALGDHG-DSSALPTLWDSLPAIAVVGGQSS--GKS-----SVL-ESIVGKDFLPRGSGIVTRRPL 72 (360)
T ss_dssp HHHTTTTTTSCSSCC-SSCCC----CCCCEEEEECBTTS--SHH-----HHH-HHHHTSCCSCCCSSSCCCSCE
T ss_pred HHHHHHHHHhhCccc-cccccccccccCCEEEEECCCCC--cHH-----HHH-HHHhCCCcCCCCCCcccCcce
Confidence 335667777776543 34589999998877 999999 455 555 57788 67888887764443
No 286
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.81 E-value=0.00035 Score=77.04 Aligned_cols=97 Identities=9% Similarity=0.031 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHHHcCCCcccc---cccCcCChHHHHHH----------HHHHHHhCCCC-EEEEECCCCCCCHHHHHHHH
Q psy7365 405 VLLNTIVNESLNKFALGHYSD---REVRTLSGGNKRKL----------STAIALLGNTP-LIFLDEPTSGMDPGARRFLW 470 (601)
Q Consensus 405 ~~~~~~~~~lLe~~~L~~~~~---~~~~~LSgGqkQRl----------~lA~AL~~~P~-lLlLDEPTsGLD~~~~~~i~ 470 (601)
.+.+++. +++...|+.+..+ +....+|+||+|+. .+++++...|. ++++||++.-+|.. ...+.
T Consensus 241 ~EmerR~-~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~ 318 (512)
T 2ius_A 241 NEMERRY-KLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKVE 318 (512)
T ss_dssp HHHHHHH-HHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHHH
T ss_pred HHHHHHH-HHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHHH
Confidence 3445553 6788888865433 23346899998753 34556677898 89999999988833 34555
Q ss_pred HHHHHHHh----CCcEEEEEccChh-------HHHhhCCEEEEE
Q psy7365 471 TCIERAVS----EGRCVILTSHNME-------ECEALCTKLTIM 503 (601)
Q Consensus 471 ~lL~~l~~----~G~tVllsTHdl~-------e~~~l~drv~iL 503 (601)
+.|.++.+ -|.++|++||..+ ....+.+||.+-
T Consensus 319 ~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lr 362 (512)
T 2ius_A 319 ELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFT 362 (512)
T ss_dssp HHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEEC
T ss_pred HHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEE
Confidence 66655532 2789999999987 456777888763
No 287
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.77 E-value=2.2e-05 Score=86.91 Aligned_cols=110 Identities=13% Similarity=0.156 Sum_probs=71.0
Q ss_pred CCCCc--ccCCCCCHHHHHHHhHHhc-CCC------hhHHHHHHHHHHHH-cCCCc----ccc---cccCcCChHHHHHH
Q psy7365 377 CPQFD--ALNDRLTPREHLEFYSRVR-NLP------SVLLNTIVNESLNK-FALGH----YSD---REVRTLSGGNKRKL 439 (601)
Q Consensus 377 v~Q~~--~l~~~lTv~E~L~~~~~~~-g~~------~~~~~~~~~~lLe~-~~L~~----~~~---~~~~~LSgGqkQRl 439 (601)
+.|+| .++..++..|.+.++.... |.. .....+.+.++... +++.. ..+ .....+|+||+||+
T Consensus 330 LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~~R~ 409 (511)
T 2oap_1 330 LRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTRLRR 409 (511)
T ss_dssp GGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCEEEE
T ss_pred hccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCceEE
Confidence 44544 3567788888776655443 421 11222222222211 22221 122 34456899999998
Q ss_pred HHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEE--EccChhHHHhhCC
Q psy7365 440 STAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL--TSHNMEECEALCT 498 (601)
Q Consensus 440 ~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVll--sTHdl~e~~~l~d 498 (601)
+++. + | |+||||.+++.+++.|.++..+|.|+++ +||++++++..|+
T Consensus 410 ~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 410 TKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp EEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred EEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 7652 1 7 9999999998888888888777899985 9999999999885
No 288
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.64 E-value=0.0098 Score=68.86 Aligned_cols=51 Identities=16% Similarity=0.136 Sum_probs=36.0
Q ss_pred CcEEEEecCCC-CCCHHHHHHHHHHHHHHhhhccccCCcEEEEE-ecchhHHHhcCCE
Q psy7365 278 ASTVILDEPTS-GVDPYSRRSIWELLIKVYYASHSLSGRTVILT-THYMDEADLLGDR 333 (601)
Q Consensus 278 ~~~liLDEPts-gLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~-tHdl~~~~~l~Dr 333 (601)
++++|+|||.. +||......+++.+.+. ....++++++ ||+.+.+..+.+.
T Consensus 209 ~~~lIlDEah~R~ld~d~~~~~l~~l~~~-----~~~~~iIl~SAT~~~~~l~~~~~~ 261 (773)
T 2xau_A 209 YSCIILDEAHERTLATDILMGLLKQVVKR-----RPDLKIIIMSATLDAEKFQRYFND 261 (773)
T ss_dssp EEEEEECSGGGCCHHHHHHHHHHHHHHHH-----CTTCEEEEEESCSCCHHHHHHTTS
T ss_pred CCEEEecCccccccchHHHHHHHHHHHHh-----CCCceEEEEeccccHHHHHHHhcC
Confidence 58999999996 99987665555555443 2245677775 9998877666653
No 289
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.59 E-value=0.00091 Score=66.69 Aligned_cols=54 Identities=26% Similarity=0.223 Sum_probs=41.6
Q ss_pred eecccCCCCCCCccccchhhhHHHhcc---CCCCCCeeEEE--------EccccCCC--chHHhcccEEEEccCC
Q psy7365 76 EQPLGPSGITLGLHTLGLEFVSRSMLM---GMLPVSSGTAK--------IYDHDIRT--DMTTIRRSLGVCPQYN 137 (601)
Q Consensus 76 ~~~~g~~g~~~g~~~~g~~~~~~~~l~---Gl~~~~~G~v~--------~~g~~~~~--~~~~~~~~ig~v~Q~~ 137 (601)
+.-.||||| |||| ++ ++|+ |+..+++|.+. .+|.++.. ....+++.+|++||.+
T Consensus 30 I~I~G~~Gs--GKST-----l~-k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 30 ITVDGPSGA--GKGT-----LC-KALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp EEEECCTTS--SHHH-----HH-HHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred EEEECCCCC--CHHH-----HH-HHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 334899999 4554 44 5888 99999999999 88988743 3455677899999864
No 290
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.54 E-value=0.0049 Score=63.19 Aligned_cols=69 Identities=14% Similarity=0.254 Sum_probs=49.2
Q ss_pred HHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH---hCCcEEEE-EccChhHHHhhCCEEEEEeCCEEEE
Q psy7365 438 KLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAV---SEGRCVIL-TSHNMEECEALCTKLTIMVNGQFTC 510 (601)
Q Consensus 438 Rl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~---~~G~tVll-sTHdl~e~~~l~drv~iL~~G~iv~ 510 (601)
+.+++ .+.+|+++|+| |+|+|+..+..++++.+-+. ..+.++++ +||..+++.++|+++..+..+.++.
T Consensus 174 ~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 174 QQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp HHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred HHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 44555 45999999999 99999987766666554432 12334555 4999999999999876666666654
No 291
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.51 E-value=0.00032 Score=73.32 Aligned_cols=52 Identities=21% Similarity=0.339 Sum_probs=43.7
Q ss_pred cccc-ccCcCChHHHHHHHHHHHHhC------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHh
Q psy7365 423 YSDR-EVRTLSGGNKRKLSTAIALLG------NTPLIFLDEPTSGMDPGARRFLWTCIERAVS 478 (601)
Q Consensus 423 ~~~~-~~~~LSgGqkQRl~lA~AL~~------~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~ 478 (601)
..|. ....+|+|++|++..+++++. +|++++ ||++|+.+..++++.|.++..
T Consensus 202 K~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 202 KADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp CCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred chhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 3453 346789999999999999987 688887 999999999999999988654
No 292
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.47 E-value=0.00066 Score=70.53 Aligned_cols=104 Identities=14% Similarity=0.071 Sum_probs=68.2
Q ss_pred cccccCCCCcccCCCCCHHHHHHHhHHhcCCC----hhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhC
Q psy7365 372 SYIGYCPQFDALNDRLTPREHLEFYSRVRNLP----SVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLG 447 (601)
Q Consensus 372 ~~ig~v~Q~~~l~~~lTv~E~L~~~~~~~g~~----~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~ 447 (601)
..|+|++|...+.+ ++.|++......++.. .....+.+...++.+++.. ..+++..||+|++||+.++
T Consensus 103 ~~v~~iDE~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~~~Ls~~l~sR~~l~----- 174 (334)
T 1in4_A 103 GDVLFIDEIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRSGLLSSPLRSRFGII----- 174 (334)
T ss_dssp TCEEEEETGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESCGGGSCHHHHTTCSEE-----
T ss_pred CCEEEEcchhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCCcccCCHHHHHhcCce-----
Confidence 45888888776654 6778775433322221 1122334556677777755 6778899999999998655
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCE
Q psy7365 448 NTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTK 499 (601)
Q Consensus 448 ~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~dr 499 (601)
.+|||.+..++.++|++.++. | ++|+.+.+..+|++
T Consensus 175 -----------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 175 -----------LELDFYTVKELKEIIKRAASLMD-----VEIEDAAAEMIAKR 211 (334)
T ss_dssp -----------EECCCCCHHHHHHHHHHHHHHTT-----CCBCHHHHHHHHHT
T ss_pred -----------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCHHHHHHHHHh
Confidence 788898999999999887643 4 36898888888875
No 293
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.16 E-value=0.0021 Score=60.63 Aligned_cols=29 Identities=34% Similarity=0.381 Sum_probs=20.9
Q ss_pred cccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEE
Q psy7365 78 PLGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKI 114 (601)
Q Consensus 78 ~~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~ 114 (601)
-+||||| |||| + .++|+|++++..|.+..
T Consensus 6 l~GpsGa--GKsT-----l-~~~L~~~~~~~~~~~~~ 34 (186)
T 3a00_A 6 ISGPSGT--GKST-----L-LKKLFAEYPDSFGFSVS 34 (186)
T ss_dssp EESSSSS--SHHH-----H-HHHHHHHCGGGEECCCE
T ss_pred EECCCCC--CHHH-----H-HHHHHhhCCccceEEee
Confidence 3899999 5655 4 57999999876665443
No 294
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.10 E-value=0.0025 Score=69.87 Aligned_cols=148 Identities=10% Similarity=0.026 Sum_probs=83.4
Q ss_pred cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCc---------ccccccccCCCCcccCC
Q psy7365 322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSA---------PQKSYIGYCPQFDALND 385 (601)
Q Consensus 322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~---------~~~~~ig~v~Q~~~l~~ 385 (601)
+++++...-+..+++++... +|++++++ ...++..+.+.+.... ..+++++|++|+..+++
T Consensus 284 ~~Isl~i~~GeVI~LVGpNG---SGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p 360 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNG---VGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS 360 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTT---SSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred CCceeeccCCeEEEEECCCc---ccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence 45555455667777886422 45554432 2223333333443221 12567999999988888
Q ss_pred CCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHh-CCCC-EEEEECCCCCCCH
Q psy7365 386 RLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL-GNTP-LIFLDEPTSGMDP 463 (601)
Q Consensus 386 ~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~-~~P~-lLlLDEPTsGLD~ 463 (601)
.+++++++.+... .+... -+++..|..+.......+| +|++.+++++. ..|. +||...||+|.|.
T Consensus 361 ~~tV~e~l~~a~~-~~~Dv--------VLIDTaGrl~~~~~lm~EL----~kiv~iar~l~~~~P~evLLvLDattGq~a 427 (503)
T 2yhs_A 361 ASVIFDAIQAAKA-RNIDV--------LIADTAGRLQNKSHLMEEL----KKIVRVMKKLDVEAPHEVMLTIDASTGQNA 427 (503)
T ss_dssp HHHHHHHHHHHHH-TTCSE--------EEECCCCSCCCHHHHHHHH----HHHHHHHHTTCTTCSSEEEEEEEGGGTHHH
T ss_pred HHHHHHHHHHHHh-cCCCE--------EEEeCCCccchhhhHHHHH----HHHHHHHHHhccCCCCeeEEEecCcccHHH
Confidence 8899999987543 22210 0223333322222222233 47888888763 4573 5555559998665
Q ss_pred HHHHHHHHHHHHHHh-CCcEEEEEccChhH
Q psy7365 464 GARRFLWTCIERAVS-EGRCVILTSHNMEE 492 (601)
Q Consensus 464 ~~~~~i~~lL~~l~~-~G~tVllsTHdl~e 492 (601)
. +.++.+.+ -|.|.+++|| ++.
T Consensus 428 l------~~ak~f~~~~~itgvIlTK-LD~ 450 (503)
T 2yhs_A 428 V------SQAKLFHEAVGLTGITLTK-LDG 450 (503)
T ss_dssp H------HHHHHHHHHTCCSEEEEEC-GGG
T ss_pred H------HHHHHHHhhcCCCEEEEEc-CCC
Confidence 4 33444543 3889999999 555
No 295
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.97 E-value=0.00048 Score=73.25 Aligned_cols=122 Identities=13% Similarity=0.126 Sum_probs=67.2
Q ss_pred cceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHHhcccEEEEccCCC-
Q psy7365 66 SYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNA- 138 (601)
Q Consensus 66 ~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~Q~~~- 138 (601)
..+++++|+.+.+ .||||+ ||||| + ++|+|. .+|.+.... .... ....++|++||.+.
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~Gs--GKSTl-----~-~~l~~~---~~g~~~~~~--~~~~--~~~~~lg~~~q~~~~ 220 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDS--GKTTL-----A-AALLEL---CGGKALNVN--LPLD--RLNFELGVAIDQFLV 220 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTS--SHHHH-----H-HHHHHH---HCCEEECCS--SCTT--THHHHHGGGTTCSCE
T ss_pred HHHHHhcccccCCCCEEEEECCCCC--CHHHH-----H-HHHHhh---cCCcEEEEe--ccch--hHHHHHHHhcchhHH
Confidence 3578888888876 999999 56554 4 577774 467776511 1111 11224778888764
Q ss_pred CCCCCCHHHHHHHhHhhcCCCh-HH--HHHHHHHHHHH---cCCC-------------cccCCccccCChHHHhhhhchh
Q psy7365 139 LFDKLTVEEHMWFYSQLKQVPK-DL--AQLEISNMIGD---LGIP-------------HKRTSLANTLSGGMQRKLDNVK 199 (601)
Q Consensus 139 ~~~~~tv~e~l~~~~~~~~~~~-~~--~~~~~~~~l~~---~gl~-------------~~~~~~~~~LSgG~~qr~~~~~ 199 (601)
++.+.+...++ ..+... .. ....+.+.++. +.+. ...+.....+++|++||+..++
T Consensus 221 l~dd~~~~~~~-----~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~ 295 (377)
T 1svm_A 221 VFEDVKGTGGE-----SRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQI 295 (377)
T ss_dssp EETTCCCSTTT-----TTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEE
T ss_pred HHHHHHHHHHH-----HhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhh
Confidence 34444332221 111110 00 01223334431 1111 2345677889999999998776
Q ss_pred hhcchhhH
Q psy7365 200 VWFNNKAW 207 (601)
Q Consensus 200 ~~~~~~~~ 207 (601)
++...|..
T Consensus 296 ~l~~~pDL 303 (377)
T 1svm_A 296 DFRPKDYL 303 (377)
T ss_dssp ECCCCHHH
T ss_pred ccCCCCCe
Confidence 66666654
No 296
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.90 E-value=0.0016 Score=65.34 Aligned_cols=47 Identities=21% Similarity=0.212 Sum_probs=24.3
Q ss_pred hhhhhccc-ccccccCCCccceeecceEEeec---------ccCCCCCCCccccchhhhHHHhccCCC
Q psy7365 48 YVSLFESL-SENRDKLGIDSYGISDTSLEEQP---------LGPSGITLGLHTLGLEFVSRSMLMGML 105 (601)
Q Consensus 48 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------~g~~g~~~g~~~~g~~~~~~~~l~Gl~ 105 (601)
++..+++| ++.|+ .+..+|+|+||++.+ +||||| ||||+ + ++|++.+
T Consensus 16 ~~l~~~~~~~~~~~---~~~~~l~~~~~~i~~~l~g~~i~l~G~~Gs--GKSTl-----~-~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFD---EEQQILKKKAEEVKPYLNGRSMYLVGMMGS--GKTTV-----G-KIMARSL 72 (250)
T ss_dssp -------------------CHHHHHHHHTTHHHHTTCCEEEECSTTS--CHHHH-----H-HHHHHHH
T ss_pred CceEEcceeeEEec---CcchhhhhhhhhhhhhcCCCEEEEECCCCC--CHHHH-----H-HHHHHhc
Confidence 35678999 99982 345799999999874 899999 56554 4 4676644
No 297
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.82 E-value=0.0028 Score=59.09 Aligned_cols=113 Identities=14% Similarity=0.127 Sum_probs=60.2
Q ss_pred ecceEEeec-----ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccc--c-CCCch----HHhcccEEEEccCC
Q psy7365 70 SDTSLEEQP-----LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDH--D-IRTDM----TTIRRSLGVCPQYN 137 (601)
Q Consensus 70 ~~~~~~~~~-----~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~--~-~~~~~----~~~~~~ig~v~Q~~ 137 (601)
+++++++.+ +||||| ||||+ .++|.+++.+++|...-.+. + +.... ...+..|.++||++
T Consensus 18 ~~~~~~~~~g~~~i~G~NGs--GKStl------l~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~ 89 (182)
T 3kta_A 18 KKVVIPFSKGFTAIVGANGS--GKSNI------GDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNE 89 (182)
T ss_dssp SCEEEECCSSEEEEEECTTS--SHHHH------HHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECT
T ss_pred ccEEEecCCCcEEEECCCCC--CHHHH------HHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCC
Confidence 567777766 999999 56554 46888888877665322221 1 11110 01345799999987
Q ss_pred CC-CC----CCCHHHHHHH-hH---hhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhh
Q psy7365 138 AL-FD----KLTVEEHMWF-YS---QLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKL 195 (601)
Q Consensus 138 ~~-~~----~~tv~e~l~~-~~---~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~ 195 (601)
.- ++ .+++...+.- +. ..-+.+ ....++.++++.+++.... ..-++.|+.+++
T Consensus 90 ~~~~~~~~~~~~i~r~~~~~~~~~~~i~g~~--~~~~~~~~~l~~~~l~~~~---~~~~~qg~~~~l 151 (182)
T 3kta_A 90 DRGFPIDEDEVVIRRRVYPDGRSSYWLNGRR--ATRSEILDILTAAMISPDG---YNIVLQGDITKF 151 (182)
T ss_dssp TCCSSSSSSEEEEEEEECTTSCEEEEETTEE--ECHHHHHHHHHHTTCCTTC---TTEECTTCTTHH
T ss_pred CcccccCCcEEEEEEEEEeCCcEEEEECCeE--cCHHHHHHHHHHcCCCCCC---CEEEEcccHHHH
Confidence 42 21 1222211100 00 011111 1235677888999987532 234677777765
No 298
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.81 E-value=0.00072 Score=64.60 Aligned_cols=33 Identities=30% Similarity=0.398 Sum_probs=25.6
Q ss_pred ccCCCCCCCccccchhhhHHHhccCCCCCCeeEE--EEccccCC
Q psy7365 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTA--KIYDHDIR 120 (601)
Q Consensus 79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v--~~~g~~~~ 120 (601)
+||||| |||| ++ ++|++.++ ..|.+ .++|.++.
T Consensus 31 ~G~sGs--GKST-----l~-~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 31 TGLSGS--GKST-----LA-CALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp ECSTTS--SHHH-----HH-HHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred ECCCCC--CHHH-----HH-HHHHHHHH-hcCceEEEecCchhh
Confidence 899999 4555 44 58899887 77888 88887663
No 299
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.73 E-value=0.0032 Score=59.58 Aligned_cols=49 Identities=18% Similarity=0.150 Sum_probs=28.6
Q ss_pred ccCCCCCCCccccchhhhHHHhccCCCCCCee-EEEEccccCCCchHHhcccEEEEccCCC
Q psy7365 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSG-TAKIYDHDIRTDMTTIRRSLGVCPQYNA 138 (601)
Q Consensus 79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G-~v~~~g~~~~~~~~~~~~~ig~v~Q~~~ 138 (601)
+||||| |||| ++ ++|+|.+.|+.| .+.. ....+......+++++||++.
T Consensus 12 ~G~~Gs--GKST-----l~-~~L~~~~~~~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~ 61 (207)
T 2j41_A 12 SGPSGV--GKGT-----VR-KRIFEDPSTSYKYSISM---TTRQMREGEVDGVDYFFKTRD 61 (207)
T ss_dssp ECSTTS--CHHH-----HH-HHHHHCTTCCEECCCCE---ECSCCCTTCCBTTTBEECCHH
T ss_pred ECCCCC--CHHH-----HH-HHHHHhhCCCeEEeccc---ccCCCCCCccCCCceEEcCHH
Confidence 899999 4554 44 689999977766 3322 221111111234778887653
No 300
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.70 E-value=0.018 Score=59.78 Aligned_cols=50 Identities=12% Similarity=0.009 Sum_probs=34.4
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhc
Q psy7365 278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLL 330 (601)
Q Consensus 278 ~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l 330 (601)
|.++++||+... |+.....+...+.+.... ...+.++|+++|+.+....+
T Consensus 126 ~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~--~~~~~~iI~~~~~~~~~~~l 175 (389)
T 1fnn_A 126 YMFLVLDDAFNL-APDILSTFIRLGQEADKL--GAFRIALVIVGHNDAVLNNL 175 (389)
T ss_dssp CEEEEEETGGGS-CHHHHHHHHHHTTCHHHH--SSCCEEEEEEESSTHHHHTS
T ss_pred eEEEEEECcccc-chHHHHHHHHHHHhCCCC--CcCCEEEEEEECCchHHHHh
Confidence 579999999875 887777777766543100 01477899999998755444
No 301
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.65 E-value=0.00074 Score=62.70 Aligned_cols=47 Identities=17% Similarity=0.096 Sum_probs=28.6
Q ss_pred cccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHHhcccEEEEccC
Q psy7365 78 PLGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQY 136 (601)
Q Consensus 78 ~~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~Q~ 136 (601)
-+||||| ||||+ + ++|++.+ |.+.+++.++.......+...|+.+|+
T Consensus 13 l~G~~Gs--GKSTl-----~-~~l~~~~----g~~~i~~d~~~~~~~~~~~~~g~~~~~ 59 (175)
T 1knq_A 13 LMGVSGS--GKSAV-----A-SEVAHQL----HAAFLDGDFLHPRRNIEKMASGEPLND 59 (175)
T ss_dssp EECSTTS--CHHHH-----H-HHHHHHH----TCEEEEGGGGCCHHHHHHHHTTCCCCH
T ss_pred EEcCCCC--CHHHH-----H-HHHHHhh----CcEEEeCccccchHHHHHhhcCcCCCc
Confidence 3899999 56554 4 4677654 788999887754211111134555554
No 302
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=94.53 E-value=0.0074 Score=68.68 Aligned_cols=40 Identities=20% Similarity=0.380 Sum_probs=29.6
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHH
Q psy7365 278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEA 327 (601)
Q Consensus 278 ~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~ 327 (601)
+-++++| |+.|+++.++. ++..+.+ .|.++|++.|.++..
T Consensus 100 ~~ilVvD-~~~g~~~qt~~-~~~~~~~--------~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 100 AALVAVS-AEAGVQVGTER-AWTVAER--------LGLPRMVVVTKLDKG 139 (665)
T ss_dssp EEEEEEE-TTTCSCHHHHH-HHHHHHH--------TTCCEEEEEECGGGC
T ss_pred cEEEEEc-CCcccchhHHH-HHHHHHH--------ccCCEEEEecCCchh
Confidence 3578889 99999988774 4444443 378888899998764
No 303
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.39 E-value=0.011 Score=64.74 Aligned_cols=49 Identities=22% Similarity=0.212 Sum_probs=30.9
Q ss_pred CcEEEEecC----------CCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHH
Q psy7365 278 ASTVILDEP----------TSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEA 327 (601)
Q Consensus 278 ~~~liLDEP----------tsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~ 327 (601)
|.+|++||+ ++|.|+...+.+.+++..+... ....+..||.+||+.+.+
T Consensus 109 p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~-~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 109 PCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGF-DSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp SEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHS-CGGGTEEEEEEESCGGGS
T ss_pred CCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhcc-CCCCCEEEEEecCChhhh
Confidence 689999999 3467777777677777665211 123477889999997654
No 304
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.35 E-value=0.0001 Score=76.59 Aligned_cols=40 Identities=20% Similarity=0.323 Sum_probs=30.2
Q ss_pred CCChHHHHHHHHHHH--HHcCCCcccCCccccCChHHHhhhh
Q psy7365 157 QVPKDLAQLEISNMI--GDLGIPHKRTSLANTLSGGMQRKLD 196 (601)
Q Consensus 157 ~~~~~~~~~~~~~~l--~~~gl~~~~~~~~~~LSgG~~qr~~ 196 (601)
..+.++...++.+.+ +.+++++...+.+.++|||+.|++.
T Consensus 168 ~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 168 PLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp CCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 355667777787777 4556777777888999999999963
No 305
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.04 E-value=0.062 Score=58.77 Aligned_cols=46 Identities=13% Similarity=0.085 Sum_probs=40.4
Q ss_pred ceeecceEEeec-----ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCC
Q psy7365 67 YGISDTSLEEQP-----LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIR 120 (601)
Q Consensus 67 ~~~~~~~~~~~~-----~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~ 120 (601)
.+++|+||++.+ +||||| ||||| .++|+|+++|++|+|.++|.++.
T Consensus 18 ~~l~~vsl~i~~e~~~liG~nGs--GKSTL------l~~l~Gl~~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 18 NGFFARTFDFDELVTTLSGGNGA--GKSTT------MAGFVTALIPDLTLLNFRNTTEA 68 (483)
T ss_dssp TTEEEEEEECCSSEEEEECCTTS--SHHHH------HHHHHHHHCCCTTTCCCCCTTSC
T ss_pred ccccceEEEEccceEEEECCCCC--cHHHH------HHHHhcCCCCCCCEEEECCEEcc
Confidence 489999999976 999999 56654 57999999999999999999875
No 306
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.03 E-value=0.00048 Score=76.80 Aligned_cols=83 Identities=18% Similarity=0.187 Sum_probs=48.3
Q ss_pred ecccCCCCCCCccccchhhhHHHhccCCCCCCee-EEE-EccccCCC-----------chHHhcccEEEEccCCCCCCCC
Q psy7365 77 QPLGPSGITLGLHTLGLEFVSRSMLMGMLPVSSG-TAK-IYDHDIRT-----------DMTTIRRSLGVCPQYNALFDKL 143 (601)
Q Consensus 77 ~~~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G-~v~-~~g~~~~~-----------~~~~~~~~ig~v~Q~~~~~~~~ 143 (601)
.-+||||| ||| |++ ++|+|.+.|++| ++. ++|.++.. ......+.+++++|+.
T Consensus 373 ~LiG~sGS--GKS-----TLa-r~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l------ 438 (552)
T 3cr8_A 373 FFTGLSGA--GKS-----TLA-RALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI------ 438 (552)
T ss_dssp EEEESSCH--HHH-----HHH-HHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH------
T ss_pred EEECCCCC--hHH-----HHH-HHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH------
Confidence 33999999 455 444 599999999987 785 88876521 0011223456666642
Q ss_pred CHHHHHHHhHhhcCCChHHHHHHHHHHHHHcC
Q psy7365 144 TVEEHMWFYSQLKQVPKDLAQLEISNMIGDLG 175 (601)
Q Consensus 144 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g 175 (601)
++.+++.+.. .+.+....++++.++++.+|
T Consensus 439 ~~~~~ivi~~--~~~~~~~~r~~~r~lL~~~g 468 (552)
T 3cr8_A 439 TKNRGIAICA--PIAPYRQTRRDVRAMIEAVG 468 (552)
T ss_dssp HHTTCEEEEC--CCCCCHHHHHHHHHHHHTTS
T ss_pred HhcCCEEEEe--cCCccHHHHHHHHHHHHHcC
Confidence 2222222111 11233455667888899888
No 307
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.02 E-value=0.048 Score=57.31 Aligned_cols=59 Identities=19% Similarity=0.119 Sum_probs=32.1
Q ss_pred ccCCCCCCCccccchhhhHHHhccCCCCCCeeEE-EEccccCCCchHHhcccEEEEccCCCCCCCCCHHH
Q psy7365 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTA-KIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEE 147 (601)
Q Consensus 79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v-~~~g~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e 147 (601)
.||+|+ ||||| +. .+++...+..|.| ++++....... ..+++|+.+|+..+....++.+
T Consensus 67 ~GppGs--GKSTL-----al-~la~~~~~~gg~VlyId~E~s~~~~--ra~rlgv~~~~l~i~~~~~~e~ 126 (356)
T 3hr8_A 67 FGQESS--GKTTL-----AL-HAIAEAQKMGGVAAFIDAEHALDPV--YAKNLGVDLKSLLISQPDHGEQ 126 (356)
T ss_dssp EESTTS--SHHHH-----HH-HHHHHHHHTTCCEEEEESSCCCCHH--HHHHHTCCGGGCEEECCSSHHH
T ss_pred ECCCCC--CHHHH-----HH-HHHHHHHhcCCeEEEEecccccchH--HHHHcCCchhhhhhhhccCHHH
Confidence 799999 56554 54 4455555566765 55555432221 3345666666654443444443
No 308
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.86 E-value=0.0093 Score=56.71 Aligned_cols=27 Identities=22% Similarity=0.260 Sum_probs=9.4
Q ss_pred CCccceeecceEEeec------ccCCCCCCCcccc
Q psy7365 63 GIDSYGISDTSLEEQP------LGPSGITLGLHTL 91 (601)
Q Consensus 63 ~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~ 91 (601)
+...++++|+||++.+ +||+|| ||||+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~i~l~G~~Gs--GKsTl 41 (199)
T 3vaa_A 9 SGVDLGTENLYFQSNAMVRIFLTGYMGA--GKTTL 41 (199)
T ss_dssp ---------------CCCEEEEECCTTS--CHHHH
T ss_pred CCCCCCCCceeEecCCCCEEEEEcCCCC--CHHHH
Confidence 3456789999999876 899999 56655
No 309
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=93.64 E-value=0.073 Score=55.50 Aligned_cols=72 Identities=15% Similarity=0.203 Sum_probs=55.4
Q ss_pred CcccccccCcCChHHHHHHHHHHHHhCCCCEEEEE-CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEc--cChhHHH
Q psy7365 421 GHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLD-EPTSGMDPGARRFLWTCIERAVSEGRCVILTS--HNMEECE 494 (601)
Q Consensus 421 ~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLD-EPTsGLD~~~~~~i~~lL~~l~~~G~tVllsT--Hdl~e~~ 494 (601)
....+.++..+|+|++|++. +.+...++-++++| +|+.|+|......+++.+.+... +..++++. ||+....
T Consensus 222 ~G~~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~ 296 (357)
T 2e87_A 222 PGLLDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEE 296 (357)
T ss_dssp TTTSSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHH
T ss_pred CCccccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChH
Confidence 33345567789999998876 55556788899999 99999999998888887776543 67888887 8886443
No 310
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.48 E-value=0.0022 Score=60.47 Aligned_cols=52 Identities=15% Similarity=0.104 Sum_probs=36.4
Q ss_pred cCChHHHHHHHHHHHHhCCCCEE-------EEECCCCC---CCHHHHHHHHHHHHHHHhCCc
Q psy7365 430 TLSGGNKRKLSTAIALLGNTPLI-------FLDEPTSG---MDPGARRFLWTCIERAVSEGR 481 (601)
Q Consensus 430 ~LSgGqkQRl~lA~AL~~~P~lL-------lLDEPTsG---LD~~~~~~i~~lL~~l~~~G~ 481 (601)
.|||||+||++||||++.+|++. +=|.|..+ +|......+.++|.+...+|.
T Consensus 103 glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 103 GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFILSLLREGG 164 (171)
T ss_dssp SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHHHHHHHHTC--
T ss_pred CcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHHHHHHHHhccC
Confidence 49999999999999999999773 22444322 344556778888877666654
No 311
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=93.35 E-value=0.087 Score=57.51 Aligned_cols=62 Identities=18% Similarity=0.157 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEECC----------CCCCCHHHHHHHHHHHHHHH----hCCcEEEEEccChhHHH
Q psy7365 433 GGNKRKLSTAIALLGNTPLIFLDEP----------TSGMDPGARRFLWTCIERAV----SEGRCVILTSHNMEECE 494 (601)
Q Consensus 433 gGqkQRl~lA~AL~~~P~lLlLDEP----------TsGLD~~~~~~i~~lL~~l~----~~G~tVllsTHdl~e~~ 494 (601)
+++++|-.++.|....|.+||+||+ +.|.|+...+.+.+++..+. ..+..||.+||..+.+.
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 6778888999999999999999999 45778877777777777763 34678999999986543
No 312
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.34 E-value=0.068 Score=55.77 Aligned_cols=35 Identities=11% Similarity=0.045 Sum_probs=21.8
Q ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccC-CcEEEEEec
Q psy7365 279 STVILDEPTSGVDPYSRRSIWELLIKVYYASHSLS-GRTVILTTH 322 (601)
Q Consensus 279 ~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~-G~TVI~~tH 322 (601)
+++|.|+|...++ .+...+++++. .. |..+|++.|
T Consensus 129 ~l~I~d~~~~si~-----~i~~~ir~l~~----~~gg~~lIVIDy 164 (338)
T 4a1f_A 129 KLFFYDKSYVRIE-----QIRLQLRKLKS----QHKELGIAFIDY 164 (338)
T ss_dssp CEEEECCTTCCHH-----HHHHHHHHHHH----HCTTEEEEEEEE
T ss_pred CeEEeCCCCCcHH-----HHHHHHHHHHH----hcCCCCEEEEec
Confidence 6999999875433 45555555532 23 678877654
No 313
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.08 E-value=0.0047 Score=64.18 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=21.3
Q ss_pred ecccCCCCCCCccccchhhhHHHhccCCCC--CCeeEEEEcc
Q psy7365 77 QPLGPSGITLGLHTLGLEFVSRSMLMGMLP--VSSGTAKIYD 116 (601)
Q Consensus 77 ~~~g~~g~~~g~~~~g~~~~~~~~l~Gl~~--~~~G~v~~~g 116 (601)
.-.||||| ||| |++ ++|+|++. |++|.|.+-+
T Consensus 96 gI~GpsGS--GKS-----Tl~-~~L~~ll~~~~~~~~v~~i~ 129 (321)
T 3tqc_A 96 GIAGSVAV--GKS-----TTS-RVLKALLSRWPDHPNVEVIT 129 (321)
T ss_dssp EEECCTTS--SHH-----HHH-HHHHHHHTTSTTCCCEEEEE
T ss_pred EEECCCCC--CHH-----HHH-HHHHHHhcccCCCCeEEEEe
Confidence 33999999 455 455 58889887 4566654433
No 314
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=91.95 E-value=0.13 Score=52.74 Aligned_cols=57 Identities=12% Similarity=0.158 Sum_probs=41.4
Q ss_pred HHHHHHcCCCcccccccCcCChHHHHHH---HHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Q psy7365 412 NESLNKFALGHYSDREVRTLSGGNKRKL---STAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERA 476 (601)
Q Consensus 412 ~~lLe~~~L~~~~~~~~~~LSgGqkQRl---~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l 476 (601)
..+++.+++.- +..+|+|+.+++ ++++++..+|+++|+|||.. ......+++.++++
T Consensus 152 ~~~~~~~gl~~-----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l 211 (306)
T 1vma_A 152 KIWGERVGATV-----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKV 211 (306)
T ss_dssp HHHHHHHTCEE-----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHH
T ss_pred HHHHHHcCCcE-----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHH
Confidence 34556666642 336789999999 89999999999999999974 33445555555554
No 315
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=91.27 E-value=0.024 Score=53.07 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=21.2
Q ss_pred ccCCCCCCCccccchhhhHHHhccCCCCC-CeeEEEEcc
Q psy7365 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPV-SSGTAKIYD 116 (601)
Q Consensus 79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~-~~G~v~~~g 116 (601)
+||||| ||||| .++|+|.+++ ..|.|....
T Consensus 11 ~GpsGs--GKSTL------~~~L~~~~~~~~~~~i~~tt 41 (180)
T 1kgd_A 11 LGAHGV--GRRHI------KNTLITKHPDRFAYPIPHTT 41 (180)
T ss_dssp ECCTTS--SHHHH------HHHHHHHCTTTEECCCCEEC
T ss_pred ECCCCC--CHHHH------HHHHHhhCCccEEEeeeccC
Confidence 899999 56554 4688888874 567665543
No 316
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=91.12 E-value=0.0083 Score=66.60 Aligned_cols=62 Identities=13% Similarity=0.114 Sum_probs=32.0
Q ss_pred eeecceEEeec-----ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-chHHhcccEEEEccCC
Q psy7365 68 GISDTSLEEQP-----LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-DMTTIRRSLGVCPQYN 137 (601)
Q Consensus 68 ~~~~~~~~~~~-----~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~~~~~~~~ig~v~Q~~ 137 (601)
++.++++++.. +||||+ |||| +. ++|++.+.+..|.|.+.|..... .....+..+|+++|..
T Consensus 98 ~l~~~~~~~~g~~vll~Gp~Gt--GKTt-----la-r~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~ 165 (543)
T 3m6a_A 98 AVQKLTKSLKGPILCLAGPPGV--GKTS-----LA-KSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRI 165 (543)
T ss_dssp HHHHHSSSCCSCEEEEESSSSS--SHHH-----HH-HHHHHHHTCEEEEECCCC--------------------CH
T ss_pred HHHHhcccCCCCEEEEECCCCC--CHHH-----HH-HHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHH
Confidence 56666665533 899999 4554 44 68999999999999888754321 1122345677777653
No 317
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=91.10 E-value=0.019 Score=54.66 Aligned_cols=35 Identities=20% Similarity=0.106 Sum_probs=27.1
Q ss_pred ecccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccC
Q psy7365 77 QPLGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDI 119 (601)
Q Consensus 77 ~~~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~ 119 (601)
.-+||||| |||| ++ ++|++.+++..|.|.+.+.+.
T Consensus 26 ~i~G~~Gs--GKst-----l~-~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 26 GIDGLSRS--GKTT-----LA-NQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp EEEECTTS--SHHH-----HH-HHHHHHHHHTTCCEEEEEGGG
T ss_pred EEECCCCC--CHHH-----HH-HHHHHHHhhcCCeEEEeccCc
Confidence 33899999 4554 44 588999988899998887665
No 318
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=90.86 E-value=0.29 Score=49.80 Aligned_cols=42 Identities=21% Similarity=0.087 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhCCCCEEEEECC-CCCCCHHHHHHHHHHHHHH
Q psy7365 435 NKRKLSTAIALLGNTPLIFLDEP-TSGMDPGARRFLWTCIERA 476 (601)
Q Consensus 435 qkQRl~lA~AL~~~P~lLlLDEP-TsGLD~~~~~~i~~lL~~l 476 (601)
+.+|.+++.+...+++++|+||| +.|+|.....++.++.+.+
T Consensus 167 ~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 167 SIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhc
Confidence 44688999988899999999999 9999999999998887765
No 319
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=90.81 E-value=0.0098 Score=57.25 Aligned_cols=54 Identities=24% Similarity=0.240 Sum_probs=36.7
Q ss_pred eecccCCCCCCCccccchhhhHHHhccCCC---CCCeeEEEE--------ccccCCC--chHHhcccEEEEccCC
Q psy7365 76 EQPLGPSGITLGLHTLGLEFVSRSMLMGML---PVSSGTAKI--------YDHDIRT--DMTTIRRSLGVCPQYN 137 (601)
Q Consensus 76 ~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl~---~~~~G~v~~--------~g~~~~~--~~~~~~~~ig~v~Q~~ 137 (601)
+.-+||||| ||||+ + ++|++.+ .+++|.+.. .|.++.. ....+++.+|++||++
T Consensus 8 i~i~G~~Gs--GKSTl-----~-~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 8 ITIDGPSGA--GKGTL-----C-KAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp EEEECCTTS--SHHHH-----H-HHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred EEEECCCCC--CHHHH-----H-HHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 444899999 55554 4 4666544 788999887 6776643 2334567789999875
No 320
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=90.11 E-value=0.23 Score=51.68 Aligned_cols=54 Identities=13% Similarity=0.145 Sum_probs=43.1
Q ss_pred CcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C-CcEEEEEc
Q psy7365 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVS-E-GRCVILTS 487 (601)
Q Consensus 429 ~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~-~-G~tVllsT 487 (601)
+.||.++.+|+..|...+.+++++|.|+|... ..++...++++.+ . |..+|++-
T Consensus 108 g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l~~~~gg~~lIVID 163 (338)
T 4a1f_A 108 GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKLKSQHKELGIAFID 163 (338)
T ss_dssp TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 47999999999999999999999999998654 3366666666654 4 67888873
No 321
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=89.96 E-value=0.51 Score=50.78 Aligned_cols=33 Identities=15% Similarity=0.152 Sum_probs=23.9
Q ss_pred ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccC
Q psy7365 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDI 119 (601)
Q Consensus 79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~ 119 (601)
+||+|+ ||||++. .|++.+.+..++|.+-+.|+
T Consensus 103 vG~~Gs-------GKTTt~~-kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 103 VGVQGS-------GKTTTAG-KLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp CCCTTS-------CHHHHHH-HHHHHHHHTTCCEEEEEECC
T ss_pred ECCCCC-------CHHHHHH-HHHHHHHHcCCeEEEEecCc
Confidence 899999 5555665 56677778888887766554
No 322
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=89.85 E-value=0.055 Score=56.81 Aligned_cols=91 Identities=18% Similarity=0.054 Sum_probs=62.3
Q ss_pred ChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEE-
Q psy7365 432 SGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTC- 510 (601)
Q Consensus 432 SgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~- 510 (601)
+++..++-.|+.++..+|+.+++|||+. .+++++|+.+.....|++.++|..+ +...|||+..+..|....
T Consensus 236 ~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~g~~~~l~t~H~~~-~~~~~~Rl~~l~~~~~~~~ 307 (361)
T 2gza_A 236 NAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAASGHGGSITSCHAGS-CELTFERLALMVLQNRQGR 307 (361)
T ss_dssp ---CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHHTTCCSCEEEEECSS-HHHHHHHHHHHHTTSTTGG
T ss_pred ccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHHHHhcccccc
Confidence 3455688899999999999999999986 3567778777544457899999965 888999999998764321
Q ss_pred ecCHHHHHHHhCCceEEEEE
Q psy7365 511 LGSATHLKSKYGQGYSVKVR 530 (601)
Q Consensus 511 ~G~~~~L~~~~~~~~~l~i~ 530 (601)
..+.+.+...+.....+.+.
T Consensus 308 ~~~~~~i~~~l~~~~~~vv~ 327 (361)
T 2gza_A 308 QLPYEIIRRLLYLVVDVVVH 327 (361)
T ss_dssp GSCHHHHHHHHHHHCCEEEE
T ss_pred CCCHHHHHHHHHHHcCEEEE
Confidence 23344454444333333333
No 323
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=89.75 E-value=0.029 Score=57.74 Aligned_cols=51 Identities=24% Similarity=0.178 Sum_probs=27.7
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhc
Q psy7365 278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLL 330 (601)
Q Consensus 278 ~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l 330 (601)
|.++++||+....+......+..++..+.. ....+.++|+++|+.+....+
T Consensus 129 ~~vlilDE~~~l~~~~~~~~l~~l~~~~~~--~~~~~~~~I~~~~~~~~~~~~ 179 (386)
T 2qby_A 129 QVVIVLDEIDAFVKKYNDDILYKLSRINSE--VNKSKISFIGITNDVKFVDLL 179 (386)
T ss_dssp CEEEEEETHHHHHHSSCSTHHHHHHHHHHS--CCC--EEEEEEESCGGGGGGC
T ss_pred eEEEEEcChhhhhccCcCHHHHHHhhchhh--cCCCeEEEEEEECCCChHhhh
Confidence 579999999865422112233333332210 023467899999988654443
No 324
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=89.33 E-value=0.12 Score=55.59 Aligned_cols=70 Identities=14% Similarity=0.149 Sum_probs=36.1
Q ss_pred EEeecccCCCCCCCccccchhhhHHHhccCCCC------------CCeeEEEEccccCCC-chHHhcccEEEEccCCCCC
Q psy7365 74 LEEQPLGPSGITLGLHTLGLEFVSRSMLMGMLP------------VSSGTAKIYDHDIRT-DMTTIRRSLGVCPQYNALF 140 (601)
Q Consensus 74 ~~~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl~~------------~~~G~v~~~g~~~~~-~~~~~~~~ig~v~Q~~~~~ 140 (601)
+.+.-+|+||+ |||| +. +.|+|... +.+|.+.++|.++.- +....++..++.+|....|
T Consensus 181 ~kvaivG~~gv--GKST-----Ll-n~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~ 252 (439)
T 1mky_A 181 IKVAIVGRPNV--GKST-----LF-NAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKY 252 (439)
T ss_dssp EEEEEECSTTS--SHHH-----HH-HHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCS
T ss_pred ceEEEECCCCC--CHHH-----HH-HHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHH
Confidence 55666999999 4554 44 56777643 568999999986421 1111233445556666666
Q ss_pred CCCCHHHHHHH
Q psy7365 141 DKLTVEEHMWF 151 (601)
Q Consensus 141 ~~~tv~e~l~~ 151 (601)
..+++.+++..
T Consensus 253 ~~~~~~~~i~~ 263 (439)
T 1mky_A 253 SNYRVVDSIEK 263 (439)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 65566555543
No 325
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.18 E-value=0.07 Score=51.91 Aligned_cols=32 Identities=13% Similarity=0.055 Sum_probs=24.0
Q ss_pred eecccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccC
Q psy7365 76 EQPLGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDI 119 (601)
Q Consensus 76 ~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~ 119 (601)
+.-.||||| ||||+ .++|+|+ .|+|.+.|.+.
T Consensus 23 i~i~G~~Gs--GKSTl------~~~L~~~----~g~v~~~~~~~ 54 (230)
T 2vp4_A 23 VLIEGNIGS--GKTTY------LNHFEKY----KNDICLLTEPV 54 (230)
T ss_dssp EEEECSTTS--CHHHH------HHTTGGG----TTTEEEECCTH
T ss_pred EEEECCCCC--CHHHH------HHHHHhc----cCCeEEEecCH
Confidence 344899999 56554 4688887 78899988764
No 326
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=89.10 E-value=0.068 Score=57.57 Aligned_cols=44 Identities=11% Similarity=0.280 Sum_probs=37.6
Q ss_pred CCCCEEEEECCCCCCCH-HHHHHHHHHHHHHHhCCcEEEEEccCh
Q psy7365 447 GNTPLIFLDEPTSGMDP-GARRFLWTCIERAVSEGRCVILTSHNM 490 (601)
Q Consensus 447 ~~P~lLlLDEPTsGLD~-~~~~~i~~lL~~l~~~G~tVllsTHdl 490 (601)
.+|++|++||+..-.+. ..+..++..+..+.+.|+.||++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 48999999999876654 678889999998888899999999973
No 327
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=88.40 E-value=0.069 Score=56.00 Aligned_cols=57 Identities=18% Similarity=0.146 Sum_probs=31.9
Q ss_pred chhhhhcccccccccCCCccceeecceEEeecccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEcc
Q psy7365 47 AYVSLFESLSENRDKLGIDSYGISDTSLEEQPLGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYD 116 (601)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g 116 (601)
.|+. +.+|++.|+. ..+.++++|.+.-+|+||+ |||| ++ +.|.|...+..|.+...+
T Consensus 16 ~~v~-~~~l~~~~~~----k~~~~~~~~~I~vvG~~g~--GKST-----Ll-n~L~~~~~~~~~~~~~~~ 72 (361)
T 2qag_A 16 GYVG-FANLPNQVHR----KSVKKGFEFTLMVVGESGL--GKST-----LI-NSLFLTDLYPERVIPGAA 72 (361)
T ss_dssp ------CCHHHHHHT----HHHHHCCEECEEECCCTTS--CHHH-----HH-HHHTTCCC----------
T ss_pred ceEE-eccchHHhCC----eeecCCCCEEEEEEcCCCC--CHHH-----HH-HHHhCCCCCCCCcccCCC
Confidence 3444 8889888754 3478999999999999999 4554 44 466666555555554444
No 328
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=87.57 E-value=0.37 Score=49.35 Aligned_cols=11 Identities=18% Similarity=0.114 Sum_probs=9.1
Q ss_pred cCChHHHhhhh
Q psy7365 186 TLSGGMQRKLD 196 (601)
Q Consensus 186 ~LSgG~~qr~~ 196 (601)
.||.++++|+.
T Consensus 133 ~l~~~~~~~l~ 143 (315)
T 3bh0_A 133 DFASEDWGKLS 143 (315)
T ss_dssp HHCSSCHHHHH
T ss_pred CCCHHHHHHHH
Confidence 38999999975
No 329
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=87.39 E-value=0.012 Score=63.31 Aligned_cols=72 Identities=11% Similarity=-0.000 Sum_probs=47.2
Q ss_pred CCCCccc--CCC----CCHHHHHHHhHHhc----CCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHh
Q psy7365 377 CPQFDAL--NDR----LTPREHLEFYSRVR----NLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL 446 (601)
Q Consensus 377 v~Q~~~l--~~~----lTv~E~L~~~~~~~----g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~ 446 (601)
++|++.+ +.. .|+.+++.+...-+ ........+.+ ..|..+++.+. ..+.+|||||+|| ||++|+
T Consensus 233 Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i-~rL~~lgl~~~--~~~~~LSgg~~QR--LaraL~ 307 (418)
T 1p9r_A 233 LRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAV-TRLRDMGIEPF--LISSSLLGVLAQR--LVRTLC 307 (418)
T ss_dssp GGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHH-HHHHHHTCCHH--HHHHHEEEEEEEE--EEEEEC
T ss_pred hccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHH-HHHHHcCCcHH--HHHHHHHHHHHHH--hhhhhc
Confidence 4577754 343 58888887643110 01111122223 35677888764 3788999999999 999999
Q ss_pred CCCCEEE
Q psy7365 447 GNTPLIF 453 (601)
Q Consensus 447 ~~P~lLl 453 (601)
.+|++..
T Consensus 308 ~~p~~~~ 314 (418)
T 1p9r_A 308 PDCKEPY 314 (418)
T ss_dssp TTTCEEE
T ss_pred CCCCccC
Confidence 9999876
No 330
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=86.81 E-value=1.2 Score=45.74 Aligned_cols=51 Identities=14% Similarity=0.037 Sum_probs=40.7
Q ss_pred hCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCcEEEEEccChhHHHhhC
Q psy7365 446 LGNTPLIFLDEPTSGMDPGARRFLWTCIERAVS---EGRCVILTSHNMEECEALC 497 (601)
Q Consensus 446 ~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~---~G~tVllsTHdl~e~~~l~ 497 (601)
..+|.+|++||+... |+.....+.+++.++.. .+.++|++||+.+....+.
T Consensus 123 ~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~ 176 (389)
T 1fnn_A 123 RDLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLD 176 (389)
T ss_dssp TTCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSC
T ss_pred cCCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhC
Confidence 356889999999876 98888888888876655 5789999999987655543
No 331
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=86.78 E-value=0.12 Score=53.28 Aligned_cols=48 Identities=19% Similarity=0.221 Sum_probs=27.5
Q ss_pred CCcEEEEecCCCCCCH--------HHH-HHHHHHHHHHhhhccccCCcEEEEEecchh
Q psy7365 277 PASTVILDEPTSGVDP--------YSR-RSIWELLIKVYYASHSLSGRTVILTTHYMD 325 (601)
Q Consensus 277 ~~~~liLDEPtsgLD~--------~~~-~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~ 325 (601)
+++++|+|+.++-... ..+ ..+.+.+.++.... +..|.+||++.|-..
T Consensus 203 ~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la-~~~~~~Vi~~nq~~~ 259 (324)
T 2z43_A 203 SIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLA-EVYDIAVIITNQVMA 259 (324)
T ss_dssp TEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHH-HHHTCEEEEEEEC--
T ss_pred CCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHH-HHhCCEEEEEcceee
Confidence 3689999999865432 121 23444444443221 234899999988654
No 332
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=86.74 E-value=0.08 Score=50.98 Aligned_cols=20 Identities=30% Similarity=0.657 Sum_probs=13.9
Q ss_pred ccCCCCCCCccccchhhhHHHhccCCCC
Q psy7365 79 LGPSGITLGLHTLGLEFVSRSMLMGMLP 106 (601)
Q Consensus 79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~ 106 (601)
+||||+ ||||| . +.|.+..+
T Consensus 25 ~GPSGa--GKsTL-----~-~~L~~~~~ 44 (197)
T 3ney_A 25 IGASGV--GRSHI-----K-NALLSQNP 44 (197)
T ss_dssp ECCTTS--SHHHH-----H-HHHHHHCT
T ss_pred ECcCCC--CHHHH-----H-HHHHhhCC
Confidence 899999 56554 4 46666665
No 333
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=86.68 E-value=0.13 Score=49.14 Aligned_cols=29 Identities=24% Similarity=0.272 Sum_probs=19.9
Q ss_pred cccCCCCCCCccccchhhhHHHhccCCCCC-CeeEEEE
Q psy7365 78 PLGPSGITLGLHTLGLEFVSRSMLMGMLPV-SSGTAKI 114 (601)
Q Consensus 78 ~~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~-~~G~v~~ 114 (601)
-+||||+ |||| ++ ++|++.+++ ..+.+..
T Consensus 13 l~GpsGs--GKsT-----l~-~~L~~~~~~~~~~~~~~ 42 (208)
T 3tau_A 13 LSGPSGV--GKGT-----VR-EAVFKDPETSFDYSISM 42 (208)
T ss_dssp EECCTTS--CHHH-----HH-HHHHHSTTCCCEECCCE
T ss_pred EECcCCC--CHHH-----HH-HHHHhhCCCcEEEEEec
Confidence 3899999 4554 44 588899887 4444444
No 334
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=86.51 E-value=0.13 Score=55.27 Aligned_cols=57 Identities=16% Similarity=0.140 Sum_probs=41.7
Q ss_pred hhcccccccccCCCccceeecceEEeec-----ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc
Q psy7365 51 LFESLSENRDKLGIDSYGISDTSLEEQP-----LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD 122 (601)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~ 122 (601)
..++|.+.|+... ++++|+ .+ +||+|+ ||||++. .|++.+.+..|+|.+.+.|+..+
T Consensus 78 v~~~L~~~~~~~~------~~i~l~-~~~vi~i~G~~Gs-------GKTT~~~-~LA~~l~~~g~~Vllvd~D~~r~ 139 (425)
T 2ffh_A 78 VYEALKEALGGEA------RLPVLK-DRNLWFLVGLQGS-------GKTTTAA-KLALYYKGKGRRPLLVAADTQRP 139 (425)
T ss_dssp HHHHHHHHTTSSC------CCCCCC-SSEEEEEECCTTS-------SHHHHHH-HHHHHHHTTTCCEEEEECCSSCH
T ss_pred HHHHHHHHhCCCc------ccccCC-CCeEEEEECCCCC-------CHHHHHH-HHHHHHHHcCCeEEEeeccccCc
Confidence 4677888876432 567776 33 899999 4555554 77899999999999998887553
No 335
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=86.26 E-value=0.0058 Score=71.12 Aligned_cols=78 Identities=9% Similarity=0.014 Sum_probs=43.2
Q ss_pred ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-chHHhcccEEEEccCCC-CCCCCCHHHHHHHhHhhc
Q psy7365 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-DMTTIRRSLGVCPQYNA-LFDKLTVEEHMWFYSQLK 156 (601)
Q Consensus 79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~~~~~~~~ig~v~Q~~~-~~~~~tv~e~l~~~~~~~ 156 (601)
.||||| |||| ++ ++|+|.+++. .+.++|.++.. ........++.+||++. .++...+.+++.+.+...
T Consensus 244 ~Gp~Gt--GKTt-----La-rala~~l~~~--~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~ 313 (806)
T 1ypw_A 244 YGPPGT--GKTL-----IA-RAVANETGAF--FFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR 313 (806)
T ss_dssp CSCTTS--SHHH-----HH-HHHHHTTTCE--EEEEEHHHHSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTT
T ss_pred ECcCCC--CHHH-----HH-HHHHHHcCCc--EEEEEchHhhhhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhcc
Confidence 899999 4554 44 6889988653 37788776533 12222334566666652 334444555555544444
Q ss_pred CCChHHHHHH
Q psy7365 157 QVPKDLAQLE 166 (601)
Q Consensus 157 ~~~~~~~~~~ 166 (601)
+....+...+
T Consensus 314 ~~~~~~~~~~ 323 (806)
T 1ypw_A 314 EKTHGEVERR 323 (806)
T ss_dssp SCCCSHHHHH
T ss_pred ccccchHHHH
Confidence 4333333333
No 336
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=86.19 E-value=0.14 Score=48.40 Aligned_cols=94 Identities=10% Similarity=0.132 Sum_probs=61.5
Q ss_pred HHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCh
Q psy7365 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490 (601)
Q Consensus 411 ~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl 490 (601)
+.++.+.+|.... .|.|+.+|..++..+..+|+.+..+ ++.++|..++.+++.+... .+.++|+.+|.+
T Consensus 47 ~~~i~~~~g~~~~-------~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l 115 (206)
T 1jjv_A 47 LSKIVEHFGAQIL-------TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLL 115 (206)
T ss_dssp HHHHHHHHCTTCC-------------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTT
T ss_pred HHHHHHHhCHHHh-------ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechh
Confidence 4455666665322 3678899999999888887644332 4567788777777766543 356899999999
Q ss_pred hHH--HhhCCEEEEEeCCEEEEecCHHHHHHHhC
Q psy7365 491 EEC--EALCTKLTIMVNGQFTCLGSATHLKSKYG 522 (601)
Q Consensus 491 ~e~--~~l~drv~iL~~G~iv~~G~~~~L~~~~~ 522 (601)
.+. ...||++++++ .+++.+.++..
T Consensus 116 ~e~~~~~~~d~vi~l~-------~~~e~~~~Rl~ 142 (206)
T 1jjv_A 116 IENKLTALCDRILVVD-------VSPQTQLARSA 142 (206)
T ss_dssp TTTTCGGGCSEEEEEE-------CCHHHHHHHHC
T ss_pred hhcCcHhhCCEEEEEE-------CCHHHHHHHHH
Confidence 887 77899998874 46777766654
No 337
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=85.88 E-value=0.026 Score=58.74 Aligned_cols=45 Identities=11% Similarity=-0.048 Sum_probs=31.6
Q ss_pred eeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCC
Q psy7365 68 GISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIR 120 (601)
Q Consensus 68 ~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~ 120 (601)
+++++++++.. +|++|+ ||| |++ +.|+|.+.+..|+|.+-+.++.
T Consensus 45 ~~~~l~~~~~~~~~i~i~G~~g~--GKS-----Tl~-~~l~~~~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 45 LLDAIMPYCGNTLRLGVTGTPGA--GKS-----TFL-EAFGMLLIREGLKVAVIAVDPS 95 (341)
T ss_dssp HHHHHGGGCSCSEEEEEEECTTS--CHH-----HHH-HHHHHHHHHTTCCEEEEEECCC
T ss_pred HHHhCCcccCCCEEEEEEcCCCC--CHH-----HHH-HHHHHHHHhcCCeEEEEeecCC
Confidence 55566654433 899999 455 444 5788998888888888776653
No 338
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=85.19 E-value=0.1 Score=53.24 Aligned_cols=58 Identities=16% Similarity=0.150 Sum_probs=39.8
Q ss_pred hhhcccccccccCCCccceeec-ceEEeec-----ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC
Q psy7365 50 SLFESLSENRDKLGIDSYGISD-TSLEEQP-----LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT 121 (601)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~ 121 (601)
+..++|.+.|+... ++ ++|+..+ +||+|+ |||| ++. .|++.+.+..|+|.+.+.++..
T Consensus 75 ~~~~~l~~~~~~~~------~~~i~~~~~~~vi~i~G~~G~--GKTT-----~~~-~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 75 IVYDELSNLFGGDK------EPKVIPDKIPYVIMLVGVQGT--GKTT-----TAG-KLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp HHHHHHHHHTTCSC------CCCCSCSSSSEEEEEECSSCS--STTH-----HHH-HHHHHHHHTTCCEEEEECCCSS
T ss_pred HHHHHHHHHhcccc------ccccccCCCCeEEEEECCCCC--CHHH-----HHH-HHHHHHHHCCCeEEEEecCCCC
Confidence 35778888876432 34 5554322 899999 4554 454 6788888888999998877643
No 339
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=82.91 E-value=0.26 Score=51.14 Aligned_cols=49 Identities=14% Similarity=0.118 Sum_probs=27.9
Q ss_pred CCcEEEEecCCCCCCHH--------HH-HHHHHHHHHHhhhccccCCcEEEEEecchhH
Q psy7365 277 PASTVILDEPTSGVDPY--------SR-RSIWELLIKVYYASHSLSGRTVILTTHYMDE 326 (601)
Q Consensus 277 ~~~~liLDEPtsgLD~~--------~~-~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~ 326 (601)
.++++|+|+.++-.... .+ ..+.+.+..+.... +..|.+||++.|-...
T Consensus 219 ~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la-~~~~~~Vi~~nq~~~~ 276 (343)
T 1v5w_A 219 IFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKIS-EEYNVAVFVTNQMTAD 276 (343)
T ss_dssp SEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHH-HHHTCEEEEEECC---
T ss_pred CccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHH-HHhCCEEEEEeeceec
Confidence 36899999999765432 11 12444444433221 2358999999986543
No 340
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=82.45 E-value=0.013 Score=64.65 Aligned_cols=71 Identities=13% Similarity=0.016 Sum_probs=55.2
Q ss_pred HHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccChhHH--HhhCCEEEEEeCCEEEEe-cCHHHHH
Q psy7365 443 IALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEEC--EALCTKLTIMVNGQFTCL-GSATHLK 518 (601)
Q Consensus 443 ~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~-G~tVllsTHdl~e~--~~l~drv~iL~~G~iv~~-G~~~~L~ 518 (601)
+||..| ++||+ ||++.+|| .+..+.. ++.++ +.++.++||+|+++ .++++++..+..+.++.. ++++++.
T Consensus 28 ralt~d-dvlLm-p~~s~~~p-~~v~l~~---eLt~~~~~~iP~vsa~md~~t~~~la~~ia~~gg~gii~~~~t~e~~~ 101 (514)
T 1jcn_A 28 DDLTYN-DFLIL-PGFIDFIA-DEVDLTS---ALTRKITLKTPLISSPMDTVTEADMAIAMALMGGIGFIHHNCTPEFQA 101 (514)
T ss_dssp SCCCGG-GEEEC-CCCCCSCG-GGCBCCE---ESSSSCEESSCEEECCCTTTCSHHHHHHHHHTTCEEEECCSSCHHHHH
T ss_pred cccccC-cEEec-cCccCCCc-ceeEEEe---eccCCeeEeceEEEEehhhhhhhhHHHHHHhcCCeeEEecCCCHHHHH
Confidence 788889 99999 99999999 4444332 33333 67889999999999 888999999888877754 6888764
Q ss_pred H
Q psy7365 519 S 519 (601)
Q Consensus 519 ~ 519 (601)
+
T Consensus 102 ~ 102 (514)
T 1jcn_A 102 N 102 (514)
T ss_dssp H
T ss_pred H
Confidence 3
No 341
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=82.14 E-value=0.39 Score=45.31 Aligned_cols=23 Identities=26% Similarity=0.237 Sum_probs=15.9
Q ss_pred eecccCCCCCCCccccchhhhHHHhccCCCC
Q psy7365 76 EQPLGPSGITLGLHTLGLEFVSRSMLMGMLP 106 (601)
Q Consensus 76 ~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl~~ 106 (601)
+.-+||||| |||| ++ ++|++.++
T Consensus 24 i~i~G~~Gs--GKST-----l~-~~L~~~~~ 46 (207)
T 2qt1_A 24 IGISGVTNS--GKTT-----LA-KNLQKHLP 46 (207)
T ss_dssp EEEEESTTS--SHHH-----HH-HHHHTTST
T ss_pred EEEECCCCC--CHHH-----HH-HHHHHhcC
Confidence 334899999 4554 45 58888764
No 342
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=81.91 E-value=1 Score=43.19 Aligned_cols=69 Identities=14% Similarity=0.107 Sum_probs=50.0
Q ss_pred HHHHHHHHHHh--CCCCEEEEECCCC--CCCHHHHHHHHHHHHHHHhCCcEEEEEccCh-hHHHhhCCEEEEEeC
Q psy7365 436 KRKLSTAIALL--GNTPLIFLDEPTS--GMDPGARRFLWTCIERAVSEGRCVILTSHNM-EECEALCTKLTIMVN 505 (601)
Q Consensus 436 kQRl~lA~AL~--~~P~lLlLDEPTs--GLD~~~~~~i~~lL~~l~~~G~tVllsTHdl-~e~~~l~drv~iL~~ 505 (601)
+..+..++..+ .+.+++||||.+. .++.....++.++|.+ +-+...||+|+.+. +++.++||-|.-|..
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~-Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~ 179 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA-RPGHQTVIITGRGCHRDILDLADTVSELRP 179 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT-SCTTCEEEEECSSCCHHHHHHCSEEEECCC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh-CcCCCEEEEECCCCcHHHHHhCcceeeecc
Confidence 45556666666 6789999999865 2344445667877764 23468899999876 578889999988864
No 343
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=80.99 E-value=1.5 Score=44.69 Aligned_cols=54 Identities=15% Similarity=0.318 Sum_probs=42.3
Q ss_pred cCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CcE--EEEEcc
Q psy7365 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRC--VILTSH 488 (601)
Q Consensus 430 ~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~-G~t--VllsTH 488 (601)
.||.++++|+..|...+.++++++.|+|... ..++...++++.++ |.. +|++-|
T Consensus 133 ~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 133 DFASEDWGKLSMAIGEISNSNINIFDKAGQS-----VNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HHCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----HHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----HHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 3999999999999999999999999998643 34566667776554 666 887755
No 344
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=80.54 E-value=0.29 Score=48.15 Aligned_cols=75 Identities=17% Similarity=0.230 Sum_probs=47.0
Q ss_pred HHHhCCCCEEEEECCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEEcc-----ChhHH----------H-------hhCCE
Q psy7365 443 IALLGNTPLIFLDEPTS-GMDPGARRFLWTCIERAVSEGRCVILTSH-----NMEEC----------E-------ALCTK 499 (601)
Q Consensus 443 ~AL~~~P~lLlLDEPTs-GLD~~~~~~i~~lL~~l~~~G~tVllsTH-----dl~e~----------~-------~l~dr 499 (601)
.++...|+++|+|||-. ..+.......|+.+.+....|..|+.++| .++++ + ..||.
T Consensus 79 ~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~~a~~ 158 (228)
T 2r8r_A 79 ALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQEAFD 158 (228)
T ss_dssp HHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHHTCSE
T ss_pred HHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHhhCCe
Confidence 33445899999999753 23433334456666666678889999998 44444 1 23444
Q ss_pred EEEEeCCEEEEecCHHHHHHHhCCc
Q psy7365 500 LTIMVNGQFTCLGSATHLKSKYGQG 524 (601)
Q Consensus 500 v~iL~~G~iv~~G~~~~L~~~~~~~ 524 (601)
|.++ +-+|++|.+++..+
T Consensus 159 v~lv-------D~~p~~l~~rl~~g 176 (228)
T 2r8r_A 159 LVLI-------DLPPRELLERLRDG 176 (228)
T ss_dssp EEEB-------CCCHHHHHHHHHTT
T ss_pred EEEe-------cCCHHHHHHHHHCC
Confidence 4333 45788887776554
No 345
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=80.51 E-value=0.18 Score=52.51 Aligned_cols=41 Identities=12% Similarity=0.114 Sum_probs=31.6
Q ss_pred hCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHH
Q psy7365 446 LGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECE 494 (601)
Q Consensus 446 ~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~ 494 (601)
..+|+++. +|++|..+..++++.|.++... +..||.+.+..
T Consensus 250 ~~~~~vi~----iSA~~g~Gi~~L~~~I~~~~~~----~~~~~~~~~~R 290 (349)
T 2www_A 250 VWKPKVIR----ISARSGEGISEMWDKMKDFQDL----MLASGELTAKR 290 (349)
T ss_dssp -CCCEEEE----CCTTTCTTHHHHHHHHHHHHHH----HHHHSHHHHHH
T ss_pred CCCceEEE----EecCCCCCHHHHHHHHHHHHHH----HhhCchHHHHH
Confidence 34677665 9999999999999999987643 35688887763
No 346
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=78.68 E-value=0.89 Score=42.22 Aligned_cols=35 Identities=23% Similarity=0.267 Sum_probs=31.1
Q ss_pred HHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Q psy7365 440 STAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERA 476 (601)
Q Consensus 440 ~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l 476 (601)
.+|++++.+|+++++| ||++|+.+..++++.|.+.
T Consensus 155 ~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 155 DEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp HHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 3588899999999999 9999999999999988653
No 347
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=75.27 E-value=11 Score=39.25 Aligned_cols=73 Identities=12% Similarity=0.053 Sum_probs=45.4
Q ss_pred HHHHHH--hCCCCEEEEECCCCCCCHH-------------HHHHHHHHHHHH----HhCCcEEEEEccChhH--------
Q psy7365 440 STAIAL--LGNTPLIFLDEPTSGMDPG-------------ARRFLWTCIERA----VSEGRCVILTSHNMEE-------- 492 (601)
Q Consensus 440 ~lA~AL--~~~P~lLlLDEPTsGLD~~-------------~~~~i~~lL~~l----~~~G~tVllsTHdl~e-------- 492 (601)
.+++.+ -.+++++++|+++.-.... ..+.+.+.++++ ++.+.+||+++|-...
T Consensus 131 ~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~fg~~ 210 (356)
T 1u94_A 131 EICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNP 210 (356)
T ss_dssp HHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC------------
T ss_pred HHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCC
Confidence 344444 3789999999998866311 112344455444 3459999999996432
Q ss_pred --------HHhhCCEEEEEeCCEEEEec
Q psy7365 493 --------CEALCTKLTIMVNGQFTCLG 512 (601)
Q Consensus 493 --------~~~l~drv~iL~~G~iv~~G 512 (601)
++.+||-++.+...+....|
T Consensus 211 ~~~~gG~~l~~~advrl~l~r~~~~k~g 238 (356)
T 1u94_A 211 ETTTGGNALKFYASVRLDIRRIGAVKEG 238 (356)
T ss_dssp --CTTCSHHHHHCSEEEEEEEEEEEESS
T ss_pred cccCCCcceeeeccEEEEEEEeeeeccC
Confidence 45678988888776655444
No 348
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=75.14 E-value=3 Score=43.49 Aligned_cols=47 Identities=11% Similarity=0.065 Sum_probs=27.6
Q ss_pred CcEEEEecCCCCCCHH-------------HHHHHHHHHHHHhhhccccCCcEEEEEecchh
Q psy7365 278 ASTVILDEPTSGVDPY-------------SRRSIWELLIKVYYASHSLSGRTVILTTHYMD 325 (601)
Q Consensus 278 ~~~liLDEPtsgLD~~-------------~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~ 325 (601)
++++|+|++++-.... ..+.+.+.++++.... +..+.+||++.|-..
T Consensus 142 ~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a-~~~~~~VI~~nq~~~ 201 (356)
T 1u94_A 142 VDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL-KQSNTLLIFINQIRM 201 (356)
T ss_dssp CSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHH-HHHTCEEEEEEC---
T ss_pred CCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHH-HHhCCEEEEEecccc
Confidence 6899999999765311 1124455555553221 235899999988643
No 349
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=74.98 E-value=0.024 Score=54.10 Aligned_cols=53 Identities=13% Similarity=0.085 Sum_probs=39.8
Q ss_pred HHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEe
Q psy7365 444 ALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMV 504 (601)
Q Consensus 444 AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~ 504 (601)
+++.+|++++|||||+++|..+.+.+.+.|....++ +..+|. . ..||+|++++
T Consensus 120 ~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~--~--~~~D~iivnd 172 (198)
T 1lvg_A 120 IFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKE--P--GLFDLVIIND 172 (198)
T ss_dssp EEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGS--T--TTCSEEEECS
T ss_pred EEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhc--c--CCceEEEECC
Confidence 567788899999999999999989998888776543 233451 1 5689887765
No 350
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=74.50 E-value=2.6 Score=43.04 Aligned_cols=57 Identities=19% Similarity=0.146 Sum_probs=36.2
Q ss_pred HHHHHHHHHh---CCCCEEEEECCCCCCCH--------HH----HHHHHHHHHHHHh-CCcEEEEEccChhHH
Q psy7365 437 RKLSTAIALL---GNTPLIFLDEPTSGMDP--------GA----RRFLWTCIERAVS-EGRCVILTSHNMEEC 493 (601)
Q Consensus 437 QRl~lA~AL~---~~P~lLlLDEPTsGLD~--------~~----~~~i~~lL~~l~~-~G~tVllsTHdl~e~ 493 (601)
+.+..+..++ .+|+++++|+.++-... .. ..++...|+.+++ .|.+||+++|-....
T Consensus 189 ~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~~~ 261 (324)
T 2z43_A 189 AIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMARP 261 (324)
T ss_dssp HHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC----
T ss_pred HHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceeecC
Confidence 4566667776 78999999999876532 12 2344444555544 389999999976543
No 351
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=73.99 E-value=2.3 Score=39.07 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=22.8
Q ss_pred ceEEeecccCCCCCCCccccchhhhHHHhccCC----CCCCee
Q psy7365 72 TSLEEQPLGPSGITLGLHTLGLEFVSRSMLMGM----LPVSSG 110 (601)
Q Consensus 72 ~~~~~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl----~~~~~G 110 (601)
-.+.+.-+|++|+ ||||+.++++.|. ..|+.|
T Consensus 19 ~~~ki~ivG~~~v-------GKSsL~~~~~~~~~~~~~~~t~~ 54 (184)
T 3ihw_A 19 PELKVGIVGNLSS-------GKSALVHRYLTGTYVQEESPEGG 54 (184)
T ss_dssp CEEEEEEECCTTS-------CHHHHHHHHHHSSCCCCCCTTCE
T ss_pred CeeEEEEECCCCC-------CHHHHHHHHhcCCCCCCcCCCcc
Confidence 3567777999999 5555677788776 456655
No 352
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=73.86 E-value=1.6 Score=40.31 Aligned_cols=30 Identities=13% Similarity=0.087 Sum_probs=12.9
Q ss_pred eeecceEEeec-----ccCCCCCCCccccchhhhHHHhccCC
Q psy7365 68 GISDTSLEEQP-----LGPSGITLGLHTLGLEFVSRSMLMGM 104 (601)
Q Consensus 68 ~~~~~~~~~~~-----~g~~g~~~g~~~~g~~~~~~~~l~Gl 104 (601)
++++++++... +|++|+ ||||+.+++..+-
T Consensus 13 ~l~~~~~~~~~~ki~~vG~~~v-------GKSsli~~l~~~~ 47 (190)
T 1m2o_B 13 VLASLGLWNKHGKLLFLGLDNA-------GKTTLLHMLKNDR 47 (190)
T ss_dssp -----------CEEEEEESTTS-------SHHHHHHHHHHSC
T ss_pred HHHHhhccCCccEEEEECCCCC-------CHHHHHHHHhcCC
Confidence 56777766544 999999 4555566665543
No 353
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=73.07 E-value=1.2 Score=40.46 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=15.6
Q ss_pred eEEeecccCCCCCCCccccchhhhHHHhccCC
Q psy7365 73 SLEEQPLGPSGITLGLHTLGLEFVSRSMLMGM 104 (601)
Q Consensus 73 ~~~~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl 104 (601)
.+.+.-+|++|+ |||| +++ .++|.
T Consensus 7 ~~~i~lvG~~gv--GKSt-----L~~-~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNV--GKST-----IFN-ALTGE 30 (188)
T ss_dssp EEEEEEECSTTS--SHHH-----HHH-HHHTT
T ss_pred CCEEEEECCCCC--CHHH-----HHH-HHhCC
Confidence 356677999999 4554 555 45553
No 354
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=72.50 E-value=0.11 Score=49.16 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=19.9
Q ss_pred eecccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCC
Q psy7365 76 EQPLGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIR 120 (601)
Q Consensus 76 ~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~ 120 (601)
+.-+||+|+ ||||+ ++ .|++.+ |...+++.++.
T Consensus 21 I~l~G~~Gs--GKSTl-----a~-~L~~~l----g~~~i~~d~~~ 53 (202)
T 3t61_A 21 IVVMGVSGS--GKSSV-----GE-AIAEAC----GYPFIEGDALH 53 (202)
T ss_dssp EEEECSTTS--CHHHH-----HH-HHHHHH----TCCEEEGGGGC
T ss_pred EEEECCCCC--CHHHH-----HH-HHHHHh----CCEEEeCCcCc
Confidence 344899999 56655 43 555443 55667666553
No 355
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=72.43 E-value=0.79 Score=41.55 Aligned_cols=27 Identities=26% Similarity=0.333 Sum_probs=18.0
Q ss_pred cccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEcc
Q psy7365 78 PLGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYD 116 (601)
Q Consensus 78 ~~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g 116 (601)
-+||||| |||| ++ ++|++.+.+ +.+++
T Consensus 9 l~G~~Gs--GKST-----l~-~~La~~l~~----~~id~ 35 (173)
T 1kag_A 9 LVGPMGA--GKST-----IG-RQLAQQLNM----EFYDS 35 (173)
T ss_dssp EECCTTS--CHHH-----HH-HHHHHHTTC----EEEEH
T ss_pred EECCCCC--CHHH-----HH-HHHHHHhCC----CEEec
Confidence 3899999 4555 44 588887654 45554
No 356
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=71.71 E-value=0.46 Score=43.72 Aligned_cols=34 Identities=32% Similarity=0.295 Sum_probs=22.8
Q ss_pred ecccCCCCCCCccccchhhhHHHhccCCCCCCee--EEEEccccC
Q psy7365 77 QPLGPSGITLGLHTLGLEFVSRSMLMGMLPVSSG--TAKIYDHDI 119 (601)
Q Consensus 77 ~~~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G--~v~~~g~~~ 119 (601)
.-+|++|| |||| ++ ++|++.+++ .| .+.++|..+
T Consensus 9 ~l~G~~Gs--GKST-----~~-~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 9 WLTGLSGA--GKTT-----VS-MALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp EEECCTTS--SHHH-----HH-HHHHHHHHH-TTCCEEEEEHHHH
T ss_pred EEECCCCC--CHHH-----HH-HHHHHHHhh-CCCcEEEECChHH
Confidence 34899999 4554 44 578887766 56 666676554
No 357
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=70.89 E-value=0.74 Score=44.78 Aligned_cols=29 Identities=24% Similarity=0.162 Sum_probs=19.1
Q ss_pred cccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEc
Q psy7365 78 PLGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIY 115 (601)
Q Consensus 78 ~~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~ 115 (601)
..||+|| |||| ++ +.|+..+++ .+.+...
T Consensus 31 i~G~~Gs--GKsT-----~~-~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 31 FEGPEGS--GKTT-----VI-NEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp EECCTTS--CHHH-----HH-HHHHHHHTT-TSCEEEE
T ss_pred EEcCCCC--CHHH-----HH-HHHHHHHhc-CCCceee
Confidence 3899999 4554 45 467777766 5666443
No 358
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=70.65 E-value=0.45 Score=45.21 Aligned_cols=36 Identities=19% Similarity=0.093 Sum_probs=25.8
Q ss_pred eecccCCCCCCCccccchhhhHHHhccCCCCCCee--EEEEccccC
Q psy7365 76 EQPLGPSGITLGLHTLGLEFVSRSMLMGMLPVSSG--TAKIYDHDI 119 (601)
Q Consensus 76 ~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G--~v~~~g~~~ 119 (601)
+.-.|++|| |||| ++ +.|++.++|..| .+.++|..+
T Consensus 28 i~~~G~~Gs--GKsT-----~~-~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 28 IWLTGLSAS--GKST-----LA-VELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp EEEECSTTS--SHHH-----HH-HHHHHHHHHHHCCCEEEECHHHH
T ss_pred EEEECCCCC--CHHH-----HH-HHHHHHhccccCCcEEEECChHH
Confidence 334899999 4554 44 578888887888 888876544
No 359
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=70.27 E-value=1.2 Score=41.55 Aligned_cols=29 Identities=14% Similarity=-0.057 Sum_probs=17.5
Q ss_pred eeecceEE-----eecccCCCCCCCccccchhhhHHHhccC
Q psy7365 68 GISDTSLE-----EQPLGPSGITLGLHTLGLEFVSRSMLMG 103 (601)
Q Consensus 68 ~~~~~~~~-----~~~~g~~g~~~g~~~~g~~~~~~~~l~G 103 (601)
+++++|+. +.-+|++|+ ||||+.+++..+
T Consensus 15 ~l~~~~~~~~~~ki~lvG~~~v-------GKSsLi~~l~~~ 48 (198)
T 1f6b_A 15 VLQFLGLYKKTGKLVFLGLDNA-------GKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHTCTTCCEEEEEEEETTS-------SHHHHHHHHSCC
T ss_pred HHHHhhccCCCcEEEEECCCCC-------CHHHHHHHHhcC
Confidence 45555543 444999999 445556655443
No 360
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=69.65 E-value=5.6 Score=40.96 Aligned_cols=56 Identities=13% Similarity=0.125 Sum_probs=35.4
Q ss_pred HHHHHHHHHh----CCCCEEEEECCCCCCCHH--------H----HHHHHHHHHHHHh-CCcEEEEEccChhH
Q psy7365 437 RKLSTAIALL----GNTPLIFLDEPTSGMDPG--------A----RRFLWTCIERAVS-EGRCVILTSHNMEE 492 (601)
Q Consensus 437 QRl~lA~AL~----~~P~lLlLDEPTsGLD~~--------~----~~~i~~lL~~l~~-~G~tVllsTHdl~e 492 (601)
+.+..+..++ .+++++++|+.++-.... . ..++...|+.+++ .|.+||+++|....
T Consensus 204 ~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~~ 276 (343)
T 1v5w_A 204 ELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTAD 276 (343)
T ss_dssp HHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC---
T ss_pred HHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeeceec
Confidence 3444455555 789999999999866432 1 2344455555554 48999999997654
No 361
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=69.40 E-value=3.3 Score=43.27 Aligned_cols=65 Identities=15% Similarity=0.116 Sum_probs=48.4
Q ss_pred HHHHHHHHcCCCccc----ccccCcCChHHHHHHHHH----HHH-hCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh
Q psy7365 410 IVNESLNKFALGHYS----DREVRTLSGGNKRKLSTA----IAL-LGNTPLIFLDEPTSGMDPGARRFLWTCIERAVS 478 (601)
Q Consensus 410 ~~~~lLe~~~L~~~~----~~~~~~LSgGqkQRl~lA----~AL-~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~ 478 (601)
.+.++++.+++.+.. ..++..+|+|+++|+.++ +++ ..+|++ +|+|++|..+..++++.|.++..
T Consensus 280 ~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 280 SSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp HHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 356678887765443 345777898988888877 555 444454 89999999999999999987643
No 362
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=69.25 E-value=6.7 Score=38.71 Aligned_cols=72 Identities=17% Similarity=0.139 Sum_probs=43.8
Q ss_pred ChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHH----------HHHHHHHHHHHHHh----CCcEEEEEccChhH----H
Q psy7365 432 SGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPG----------ARRFLWTCIERAVS----EGRCVILTSHNMEE----C 493 (601)
Q Consensus 432 SgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~----------~~~~i~~lL~~l~~----~G~tVllsTHdl~e----~ 493 (601)
+++++.|..+..+...+|.+|++||+.+.++.. ....+...+..... .+..||.+|++.+. +
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 457778888888888999999999997765532 22334444433211 23557778887542 2
Q ss_pred HhhCCEEEEE
Q psy7365 494 EALCTKLTIM 503 (601)
Q Consensus 494 ~~l~drv~iL 503 (601)
.+-|++++.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 2235555444
No 363
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=68.86 E-value=0.056 Score=54.42 Aligned_cols=88 Identities=13% Similarity=0.023 Sum_probs=56.4
Q ss_pred cccccCCCCc-ccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCC
Q psy7365 372 SYIGYCPQFD-ALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTP 450 (601)
Q Consensus 372 ~~ig~v~Q~~-~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~ 450 (601)
+.+++++|.. ..++.+++.|++.+....++. ... + .+....++.+.+|||||+||+.+++|+.++|+
T Consensus 90 ~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~------~~~----~--~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~ 157 (274)
T 2x8a_A 90 RAVRQVFQRAKNSAPCVIFFDEVDALCPRRSD------RET----G--ASVRVVNQLLTEMDGLEARQQVFIMAATNRPD 157 (274)
T ss_dssp HHHHHHHHHHHHTCSEEEEEETCTTTCC---------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGG
T ss_pred HHHHHHHHHHHhcCCCeEeeehhhhhhcccCC------Ccc----h--HHHHHHHHHHHhhhcccccCCEEEEeecCChh
Confidence 4577777764 345556666766543211110 000 0 12344567788999999999999999999999
Q ss_pred EEEEECCCC------------CCCHHHHHHHHHHH
Q psy7365 451 LIFLDEPTS------------GMDPGARRFLWTCI 473 (601)
Q Consensus 451 lLlLDEPTs------------GLD~~~~~~i~~lL 473 (601)
+| |||+. --|...|.++++.+
T Consensus 158 ~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 158 II--DPAILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp GS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred hC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 85 99864 23677777777654
No 364
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=68.35 E-value=0.91 Score=41.37 Aligned_cols=13 Identities=23% Similarity=0.146 Sum_probs=9.2
Q ss_pred ecccCCCCCCCcccc
Q psy7365 77 QPLGPSGITLGLHTL 91 (601)
Q Consensus 77 ~~~g~~g~~~g~~~~ 91 (601)
.-.||||+ ||||+
T Consensus 7 ~l~G~~Gs--GKST~ 19 (178)
T 1qhx_A 7 ILNGGSSA--GKSGI 19 (178)
T ss_dssp EEECCTTS--SHHHH
T ss_pred EEECCCCC--CHHHH
Confidence 34899999 55554
No 365
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Probab=68.01 E-value=2.3 Score=41.83 Aligned_cols=67 Identities=9% Similarity=-0.104 Sum_probs=48.2
Q ss_pred CCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchhh
Q psy7365 139 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKA 206 (601)
Q Consensus 139 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~~ 206 (601)
+|.......++...++..+++.....+++.++-+.+|. .+.+|.++.||||..|+.+.+++++..+.
T Consensus 27 ~f~~v~~~gs~~~aa~~l~~s~~~~s~~i~~le~~lg~-~L~~R~~~~lsg~~~~lt~~g~~l~~~~~ 93 (265)
T 1b9m_A 27 LLKHIALSGSISQGAKDAGISYKSAWDAINEMNQLSEH-ILVERATGGKGGGGAVLTRYGQRLIQLYD 93 (265)
T ss_dssp HHHHHHHHSSHHHHHHHHTCCHHHHHHHHHHHHHHHTS-CCEEECCCC-----EEECHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHHHHhCC-CeEEecCCCCCCCceEECHHHHHHHHHHH
Confidence 34333444445566777888888888889999999999 78899999999999999998888776654
No 366
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=67.27 E-value=17 Score=38.54 Aligned_cols=75 Identities=17% Similarity=0.096 Sum_probs=49.0
Q ss_pred CcCChHHHHHHHHHHHHh--CCCCEEEEECCCCCCCH----------HHHHHHHHHHHHHHhC-CcEEEEEccChh----
Q psy7365 429 RTLSGGNKRKLSTAIALL--GNTPLIFLDEPTSGMDP----------GARRFLWTCIERAVSE-GRCVILTSHNME---- 491 (601)
Q Consensus 429 ~~LSgGqkQRl~lA~AL~--~~P~lLlLDEPTsGLD~----------~~~~~i~~lL~~l~~~-G~tVllsTHdl~---- 491 (601)
..+|..+.. ..++.+. ++|+++++|..+.=.+. ....++...|+.++++ +.+||+++|--.
T Consensus 291 ~~~s~~~l~--~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~ 368 (444)
T 2q6t_A 291 PDLTLMEVR--ARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEA 368 (444)
T ss_dssp TTCBHHHHH--HHHHHHHHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGS
T ss_pred CCCCHHHHH--HHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCccccc
Confidence 356665543 3444443 68999999997653322 1224566667777655 999999998311
Q ss_pred ---------------HHHhhCCEEEEEeC
Q psy7365 492 ---------------ECEALCTKLTIMVN 505 (601)
Q Consensus 492 ---------------e~~~l~drv~iL~~ 505 (601)
.++..||.|++|..
T Consensus 369 r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 369 RPNKRPMLSDLRESGSIEQDADLVMFIYR 397 (444)
T ss_dssp SSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred CCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence 35778999999864
No 367
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=66.95 E-value=0.37 Score=49.52 Aligned_cols=64 Identities=14% Similarity=0.160 Sum_probs=43.8
Q ss_pred cccCCCCcccCC----CCCHHHHHH-HhHHh---------cC-CChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHH
Q psy7365 374 IGYCPQFDALND----RLTPREHLE-FYSRV---------RN-LPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRK 438 (601)
Q Consensus 374 ig~v~Q~~~l~~----~lTv~E~L~-~~~~~---------~g-~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQR 438 (601)
+||++|.|.+.. .+|+ |++. ++..+ ++ ....+....+.++++.++|.+.+.+...+|+.|++||
T Consensus 225 ~g~v~dtpg~~~~~l~~lt~-e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~~ 303 (307)
T 1t9h_A 225 GGLVADTPGFSSLEFTDIEE-EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDR 303 (307)
T ss_dssp TEEEESSCSCSSCCCTTCCH-HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHTT
T ss_pred CEEEecCCCccccccccCCH-HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhc
Confidence 799999988765 6889 8883 22211 22 1222334568899999999876666777788888874
No 368
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=66.81 E-value=0.98 Score=41.88 Aligned_cols=12 Identities=25% Similarity=0.493 Sum_probs=8.9
Q ss_pred cccCCCCCCCcccc
Q psy7365 78 PLGPSGITLGLHTL 91 (601)
Q Consensus 78 ~~g~~g~~~g~~~~ 91 (601)
-+|++|| ||||+
T Consensus 15 l~G~~Gs--GKSTv 26 (184)
T 1y63_A 15 ITGTPGT--GKTSM 26 (184)
T ss_dssp EECSTTS--SHHHH
T ss_pred EECCCCC--CHHHH
Confidence 3999999 55554
No 369
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=66.54 E-value=0.26 Score=50.07 Aligned_cols=58 Identities=10% Similarity=0.064 Sum_probs=42.1
Q ss_pred cccccCCCCcc----------------cCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCC-cccccccCcCCh
Q psy7365 372 SYIGYCPQFDA----------------LNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALG-HYSDREVRTLSG 433 (601)
Q Consensus 372 ~~ig~v~Q~~~----------------l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~-~~~~~~~~~LSg 433 (601)
+.+||++|.|. +++++|+ +|+.|... .. ..+...++.++|+.++|. +..++++..||.
T Consensus 220 ~~~g~v~q~p~~~~~~~~~~~~~~~~~l~~~~~~-~n~~~~~~-~~--~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 220 DFGGYVVDTPGFANLEINDIEPEELKHYFKEFGD-KQCFFSDC-NH--VDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp TTSCEEESSCSSTTCCCCSSCHHHHGGGSTTSSS-CCCSSTTC-CS--SSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred CCCCEEEECcCCCccCCCcCCHHHHHHHHHhccc-ccCcCCCC-cC--CCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 35788888864 5788899 88877421 11 223345688999999995 778888998885
No 370
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=65.85 E-value=3.1 Score=37.20 Aligned_cols=16 Identities=31% Similarity=0.443 Sum_probs=12.7
Q ss_pred CCcEEEEEecchhHHH
Q psy7365 313 SGRTVILTTHYMDEAD 328 (601)
Q Consensus 313 ~G~TVI~~tHdl~~~~ 328 (601)
.+..++++.|..+...
T Consensus 107 ~~~p~ilv~nK~Dl~~ 122 (165)
T 2wji_A 107 MGANLLLALNKMDLAK 122 (165)
T ss_dssp TTCCEEEEEECHHHHH
T ss_pred cCCCEEEEEEchHhcc
Confidence 3678899999988764
No 371
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=65.75 E-value=2.7 Score=38.89 Aligned_cols=33 Identities=24% Similarity=0.258 Sum_probs=29.9
Q ss_pred HHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Q psy7365 442 AIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERA 476 (601)
Q Consensus 442 A~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l 476 (601)
|++++.+|++.++| ||++|+.+..++++.|.+.
T Consensus 133 a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 133 ARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTE 165 (199)
T ss_dssp HHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHH
Confidence 77888899999999 9999999999999988764
No 372
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Probab=65.71 E-value=2.6 Score=41.42 Aligned_cols=54 Identities=11% Similarity=-0.041 Sum_probs=41.1
Q ss_pred hHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCC
Q psy7365 396 YSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTP 450 (601)
Q Consensus 396 ~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~ 450 (601)
.++..+++.....++++++-+.+|. .+.+|.++.||||..|+...+++|+..|+
T Consensus 40 aa~~l~~s~~~~s~~i~~le~~lg~-~L~~R~~~~lsg~~~~lt~~g~~l~~~~~ 93 (265)
T 1b9m_A 40 GAKDAGISYKSAWDAINEMNQLSEH-ILVERATGGKGGGGAVLTRYGQRLIQLYD 93 (265)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHTS-CCEEECCCC-----EEECHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHhCC-CeEEecCCCCCCCceEECHHHHHHHHHHH
Confidence 4444567766677778888899999 78899999999999999999999998887
No 373
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=65.56 E-value=79 Score=32.69 Aligned_cols=71 Identities=18% Similarity=0.127 Sum_probs=45.4
Q ss_pred HHHHHHHHHh--CCCCEEEEECCCCCCC----------------HHHHHHHHHHHHHHHhC-CcEEEEEccCh-------
Q psy7365 437 RKLSTAIALL--GNTPLIFLDEPTSGMD----------------PGARRFLWTCIERAVSE-GRCVILTSHNM------- 490 (601)
Q Consensus 437 QRl~lA~AL~--~~P~lLlLDEPTsGLD----------------~~~~~~i~~lL~~l~~~-G~tVllsTHdl------- 490 (601)
+-+.++..++ ..|+++++|+-++=.. .....+++..|..++++ |.|||++.|-.
T Consensus 126 ~~l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv~~k~g~~f 205 (356)
T 3hr8_A 126 QALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQIRMKIGVMF 205 (356)
T ss_dssp HHHHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEESSSCSSSSS
T ss_pred HHHHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeecccccc
Confidence 3345555554 6799999998654443 11122344455566544 89999999872
Q ss_pred ---------hHHHhhCCEEEEEeCCE
Q psy7365 491 ---------EECEALCTKLTIMVNGQ 507 (601)
Q Consensus 491 ---------~e~~~l~drv~iL~~G~ 507 (601)
.-++.++|-++.+.++.
T Consensus 206 g~p~~~~GG~~l~h~~~~rl~l~k~~ 231 (356)
T 3hr8_A 206 GSPETTTGGLALKFYATMRMEVRRGE 231 (356)
T ss_dssp CSCSSCTHHHHHHHHCSEEEEEEEEE
T ss_pred CCcccCCCcchhhhhCcEEEEEEecc
Confidence 22577899999998643
No 374
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=64.55 E-value=1.8 Score=39.59 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=15.2
Q ss_pred EEeecccCCCCCCCccccchhhhHHHhccCCCCC
Q psy7365 74 LEEQPLGPSGITLGLHTLGLEFVSRSMLMGMLPV 107 (601)
Q Consensus 74 ~~~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~ 107 (601)
+.+.-+|++|+ |||| +++ .+.|...+
T Consensus 3 ~kv~ivG~~gv--GKSt-----Ll~-~l~~~~~~ 28 (184)
T 2zej_A 3 MKLMIVGNTGS--GKTT-----LLQ-QLMKTKKS 28 (184)
T ss_dssp CEEEEESCTTS--SHHH-----HHH-HHTCC---
T ss_pred eEEEEECCCCC--CHHH-----HHH-HHhcCCCc
Confidence 34556999999 4554 454 56665433
No 375
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=62.34 E-value=11 Score=36.55 Aligned_cols=53 Identities=19% Similarity=0.243 Sum_probs=40.0
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccC----------hhHHHhhCCEEEEEe
Q psy7365 447 GNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN----------MEECEALCTKLTIMV 504 (601)
Q Consensus 447 ~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHd----------l~e~~~l~drv~iL~ 504 (601)
.+|+++++||--. |++. +.+.++.+++.|.+||++.|+ ...+..+||+|.-|+
T Consensus 88 ~~~dvViIDEaQ~-l~~~----~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 88 DETKVIGIDEVQF-FDDR----ICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TTCCEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCCEEEEecCcc-CcHH----HHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 3589999999853 5543 455566666679999999993 356677999999875
No 376
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=61.38 E-value=0.059 Score=51.49 Aligned_cols=73 Identities=11% Similarity=0.168 Sum_probs=47.2
Q ss_pred CcCChHHHHHHHHH-HHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhH-HHhhCCEEEEEeCC
Q psy7365 429 RTLSGGNKRKLSTA-IALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEE-CEALCTKLTIMVNG 506 (601)
Q Consensus 429 ~~LSgGqkQRl~lA-~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e-~~~l~drv~iL~~G 506 (601)
..+|+||+||++++ ++++.++.++++|||. |..+.++ --.+++++++.+. +.+++.|. +..|
T Consensus 110 ~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~-----------~~~l~~~---~d~~i~vd~~~~~~~~R~~~R~--~~~g 173 (208)
T 3c8u_A 110 RDIAIAGAAEVGPECRVAIIEGNYLLFDAPG-----------WRDLTAI---WDVSIRLEVPMADLEARLVQRW--LDHG 173 (208)
T ss_dssp TTEEEEEEEEECTTCCEEEEEESSTTBCSTT-----------GGGGGGT---CSEEEEECCCHHHHHHHHHHHH--HHTT
T ss_pred ccCCCCCceEEcCCCcEEEECCceeccCCch-----------hHHHHHh---cCEEEEEeCCHHHHHHHHHHHH--HhcC
Confidence 35799999999876 6666666666666662 2222222 2367888888886 67777773 3445
Q ss_pred EEEEecCHHHHHHHhC
Q psy7365 507 QFTCLGSATHLKSKYG 522 (601)
Q Consensus 507 ~iv~~G~~~~L~~~~~ 522 (601)
. +.+++.+++.
T Consensus 174 ~-----t~~~~~~~~~ 184 (208)
T 3c8u_A 174 L-----NHDAAVARAQ 184 (208)
T ss_dssp C-----CHHHHHHHHH
T ss_pred C-----CHHHHHHHHH
Confidence 4 6777766553
No 377
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=61.19 E-value=1.2 Score=41.59 Aligned_cols=33 Identities=30% Similarity=0.269 Sum_probs=18.8
Q ss_pred cccCCCCCCCccccchhhhHHHhccCCCCCC---eeEEEEcccc
Q psy7365 78 PLGPSGITLGLHTLGLEFVSRSMLMGMLPVS---SGTAKIYDHD 118 (601)
Q Consensus 78 ~~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~---~G~v~~~g~~ 118 (601)
-.||||+ |||| ++. .|.+.+++. -|.|..++++
T Consensus 11 i~G~sGs--GKTT-----l~~-~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 11 FAAWSGT--GKTT-----LLK-KLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp EECCTTS--CHHH-----HHH-HHHHHHHHTTCCEEEEEECCC-
T ss_pred EEeCCCC--CHHH-----HHH-HHHHhccccCCceeEEeeCCCc
Confidence 4899999 4554 454 444444432 4666665543
No 378
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=60.52 E-value=1.6 Score=40.05 Aligned_cols=14 Identities=29% Similarity=0.515 Sum_probs=9.9
Q ss_pred ecccCCCCCCCccccc
Q psy7365 77 QPLGPSGITLGLHTLG 92 (601)
Q Consensus 77 ~~~g~~g~~~g~~~~g 92 (601)
.-+||+|| ||||+|
T Consensus 9 ~l~G~~Gs--GKst~a 22 (185)
T 3trf_A 9 YLIGLMGA--GKTSVG 22 (185)
T ss_dssp EEECSTTS--SHHHHH
T ss_pred EEECCCCC--CHHHHH
Confidence 34899999 566553
No 379
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=60.37 E-value=3.4 Score=37.43 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=14.7
Q ss_pred EeecccCCCCCCCccccchhhhHHHhccCCC
Q psy7365 75 EEQPLGPSGITLGLHTLGLEFVSRSMLMGML 105 (601)
Q Consensus 75 ~~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl~ 105 (601)
.+.-+|++|+ |||| +.+ .++|..
T Consensus 6 ki~ivG~~g~--GKSt-----Ll~-~l~~~~ 28 (172)
T 2gj8_A 6 KVVIAGRPNA--GKSS-----LLN-ALAGRE 28 (172)
T ss_dssp EEEEEESTTS--SHHH-----HHH-HHHTSC
T ss_pred EEEEECCCCC--CHHH-----HHH-HHhCCC
Confidence 4556999999 4554 454 556643
No 380
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=60.32 E-value=1.3 Score=45.09 Aligned_cols=49 Identities=14% Similarity=0.097 Sum_probs=29.1
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHH---HhCCcEEEEEccChhHHHhh
Q psy7365 448 NTPLIFLDEPTSGMDPGARRFLWTCIERA---VSEGRCVILTSHNMEECEAL 496 (601)
Q Consensus 448 ~P~lLlLDEPTsGLD~~~~~~i~~lL~~l---~~~G~tVllsTHdl~e~~~l 496 (601)
.|.+|++||+....+......+..+++.+ ...+.++|++||+.+..+.+
T Consensus 128 ~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~ 179 (386)
T 2qby_A 128 SQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLL 179 (386)
T ss_dssp SCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGC
T ss_pred CeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhh
Confidence 38999999997755321122333444333 22367899999988654443
No 381
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=60.04 E-value=2.6 Score=44.67 Aligned_cols=35 Identities=17% Similarity=0.242 Sum_probs=22.1
Q ss_pred EEeecccCCCCCCCccccchhhhHHHhccCC-----------CCCCeeEEEEcc
Q psy7365 74 LEEQPLGPSGITLGLHTLGLEFVSRSMLMGM-----------LPVSSGTAKIYD 116 (601)
Q Consensus 74 ~~~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl-----------~~~~~G~v~~~g 116 (601)
+.+.-+|++|+ ||||| .+.|+|. +.|..|.+.+.|
T Consensus 23 ~kvgIVG~pnv--GKSTL------~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 23 LKIGIVGLPNV--GKSTF------FNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CCEEEECCSSS--SHHHH------HHHHHC-------------CCSEEEEECCC
T ss_pred CEEEEECCCCC--CHHHH------HHHHHCCCccccCCCccccCceeEEEEECC
Confidence 44556999999 56554 4577776 456667666654
No 382
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=58.81 E-value=7.8 Score=41.31 Aligned_cols=43 Identities=7% Similarity=0.187 Sum_probs=33.4
Q ss_pred CCcEEEEecCCCCCCH-HHHHHHHHHHHHHhhhccccCCcEEEEEecch
Q psy7365 277 PASTVILDEPTSGVDP-YSRRSIWELLIKVYYASHSLSGRTVILTTHYM 324 (601)
Q Consensus 277 ~~~~liLDEPtsgLD~-~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl 324 (601)
.+++|++||+..-.+. .++..++..+..+. ..|+.+|++||+.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~-----~~~~~iIitt~~~ 237 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELH-----DSGKQIVICSDRE 237 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHH-----TTTCEEEEEESSC
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHH-----HCCCeEEEEECCC
Confidence 3689999999876653 67778888887763 3588999999974
No 383
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=57.38 E-value=2.8 Score=37.75 Aligned_cols=11 Identities=36% Similarity=0.749 Sum_probs=8.6
Q ss_pred ccCCCCCCCcccc
Q psy7365 79 LGPSGITLGLHTL 91 (601)
Q Consensus 79 ~g~~g~~~g~~~~ 91 (601)
.||||+ ||||+
T Consensus 29 ~G~NGs--GKSti 39 (149)
T 1f2t_A 29 IGQNGS--GKSSL 39 (149)
T ss_dssp ECCTTS--SHHHH
T ss_pred ECCCCC--CHHHH
Confidence 999999 56654
No 384
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=57.36 E-value=1.9 Score=39.31 Aligned_cols=12 Identities=42% Similarity=0.446 Sum_probs=8.9
Q ss_pred cccCCCCCCCcccc
Q psy7365 78 PLGPSGITLGLHTL 91 (601)
Q Consensus 78 ~~g~~g~~~g~~~~ 91 (601)
-.||+|+ ||||+
T Consensus 9 i~G~~Gs--GKsTl 20 (175)
T 1via_A 9 FIGFMGS--GKSTL 20 (175)
T ss_dssp EECCTTS--CHHHH
T ss_pred EEcCCCC--CHHHH
Confidence 3899999 56554
No 385
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=56.58 E-value=11 Score=37.94 Aligned_cols=43 Identities=14% Similarity=0.151 Sum_probs=32.8
Q ss_pred CCCCEEEEECCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEEccC
Q psy7365 447 GNTPLIFLDEPTS-GMDPGARRFLWTCIERAVSEGRCVILTSHN 489 (601)
Q Consensus 447 ~~P~lLlLDEPTs-GLD~~~~~~i~~lL~~l~~~G~tVllsTHd 489 (601)
.+|++|++||+.. .-+...+..+...+..+.+.|..+|++|+.
T Consensus 97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~ 140 (324)
T 1l8q_A 97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR 140 (324)
T ss_dssp HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4699999999854 335578888999998887777777776653
No 386
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=54.65 E-value=4.2 Score=39.02 Aligned_cols=42 Identities=10% Similarity=0.063 Sum_probs=26.6
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEec
Q psy7365 278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTH 322 (601)
Q Consensus 278 ~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tH 322 (601)
++++|+..+.+.++......+..++..+... ....++|+.+|
T Consensus 113 ~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~---~~~~~iiv~nK 154 (239)
T 3lxx_A 113 PHALLLVVPLGRYTEEEHKATEKILKMFGER---ARSFMILIFTR 154 (239)
T ss_dssp CSEEEEEEETTCCSSHHHHHHHHHHHHHHHH---HGGGEEEEEEC
T ss_pred CcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh---ccceEEEEEeC
Confidence 5788888888888887766666555433110 11247777777
No 387
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=54.14 E-value=9.9 Score=36.26 Aligned_cols=58 Identities=22% Similarity=0.130 Sum_probs=41.7
Q ss_pred CCcEEEEecCCCC--CCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchh-HHHhcCCEEEEecCC
Q psy7365 277 PASTVILDEPTSG--VDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMD-EADLLGDRIAIIAAG 340 (601)
Q Consensus 277 ~~~~liLDEPtsg--LD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~-~~~~l~Drv~vL~~G 340 (601)
..+++||||.+.. ++......+.++|.+ +.....||+++.+.. ++.+++|-|--|..-
T Consensus 120 ~yDlvILDEi~~al~~g~l~~~ev~~~l~~------Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~v 180 (196)
T 1g5t_A 120 LLDMVVLDELTYMVAYDYLPLEEVISALNA------RPGHQTVIITGRGCHRDILDLADTVSELRPV 180 (196)
T ss_dssp TCSEEEEETHHHHHHTTSSCHHHHHHHHHT------SCTTCEEEEECSSCCHHHHHHCSEEEECCCS
T ss_pred CCCEEEEeCCCccccCCCCCHHHHHHHHHh------CcCCCEEEEECCCCcHHHHHhCcceeeecce
Confidence 3689999999752 333344557777754 356789999988854 678899999888753
No 388
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=54.07 E-value=3.1 Score=46.34 Aligned_cols=49 Identities=12% Similarity=0.229 Sum_probs=40.3
Q ss_pred cccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Q psy7365 426 REVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIER 475 (601)
Q Consensus 426 ~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~ 475 (601)
...+.+|+|++|++..++....++.+|||||... |++..+..+.+.|.+
T Consensus 179 ~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 179 FQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp C----CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred hhcCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 3446799999999999999999999999999988 899888888888864
No 389
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=53.70 E-value=2.4 Score=39.18 Aligned_cols=13 Identities=31% Similarity=0.521 Sum_probs=9.5
Q ss_pred ecccCCCCCCCcccc
Q psy7365 77 QPLGPSGITLGLHTL 91 (601)
Q Consensus 77 ~~~g~~g~~~g~~~~ 91 (601)
.-.|++|| ||||+
T Consensus 4 ~i~G~~Gs--GKsT~ 16 (205)
T 2jaq_A 4 AIFGTVGA--GKSTI 16 (205)
T ss_dssp EEECCTTS--CHHHH
T ss_pred EEECCCcc--CHHHH
Confidence 34799999 56665
No 390
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=52.55 E-value=20 Score=35.15 Aligned_cols=52 Identities=17% Similarity=0.173 Sum_probs=41.5
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccC----------hhHHHhhCCEEEEEe
Q psy7365 447 GNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN----------MEECEALCTKLTIMV 504 (601)
Q Consensus 447 ~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHd----------l~e~~~l~drv~iL~ 504 (601)
.+.+++++||----.| +.++++.+.+.|+.||++.++ ..++..+||.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999755543 666666666689999999999 456778999999875
No 391
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=51.49 E-value=2.7 Score=41.27 Aligned_cols=11 Identities=27% Similarity=0.573 Sum_probs=8.7
Q ss_pred ccCCCCCCCcccc
Q psy7365 79 LGPSGITLGLHTL 91 (601)
Q Consensus 79 ~g~~g~~~g~~~~ 91 (601)
+||+|+ ||||+
T Consensus 7 ~G~~GS--GKSTl 17 (253)
T 2ze6_A 7 YGPTCS--GKTDM 17 (253)
T ss_dssp ECCTTS--SHHHH
T ss_pred ECCCCc--CHHHH
Confidence 799999 56665
No 392
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=49.02 E-value=7.4 Score=39.19 Aligned_cols=64 Identities=8% Similarity=0.058 Sum_probs=48.8
Q ss_pred CChHHHHHHHHHHHHh--CCCCEEEEECCCCCCCHHH-HHHHHHHHHHHHhC-Cc--EEEEEccChhHHHhhCCEEE
Q psy7365 431 LSGGNKRKLSTAIALL--GNTPLIFLDEPTSGMDPGA-RRFLWTCIERAVSE-GR--CVILTSHNMEECEALCTKLT 501 (601)
Q Consensus 431 LSgGqkQRl~lA~AL~--~~P~lLlLDEPTsGLD~~~-~~~i~~lL~~l~~~-G~--tVllsTHdl~e~~~l~drv~ 501 (601)
+|.|++ .++..+. ..|.++++ +.+|... +..+.+.+.++.+. |. .+.+|+|+-+.++.++|.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHH
Confidence 888876 4556665 78999999 8999887 77788888888764 43 67778888887777777654
No 393
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=48.94 E-value=52 Score=34.14 Aligned_cols=69 Identities=12% Similarity=0.107 Sum_probs=43.8
Q ss_pred HHHHHHHh--CCCCEEEEECCCCCCC---H----------HHHHHHHHHHHHH---H-hCCcEEEEEccChhH-------
Q psy7365 439 LSTAIALL--GNTPLIFLDEPTSGMD---P----------GARRFLWTCIERA---V-SEGRCVILTSHNMEE------- 492 (601)
Q Consensus 439 l~lA~AL~--~~P~lLlLDEPTsGLD---~----------~~~~~i~~lL~~l---~-~~G~tVllsTHdl~e------- 492 (601)
+.++..++ .+++++|+|..++=.- . ...+.+.+.+++| + +.+.+||+++|-...
T Consensus 141 l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~~~~~~fg~ 220 (366)
T 1xp8_A 141 LEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMYGN 220 (366)
T ss_dssp HHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC----------
T ss_pred HHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEecccccCcccCC
Confidence 34444454 5799999999876441 0 1124456666665 3 348999999886532
Q ss_pred ---------HHhhCCEEEEEeCCE
Q psy7365 493 ---------CEALCTKLTIMVNGQ 507 (601)
Q Consensus 493 ---------~~~l~drv~iL~~G~ 507 (601)
++.+||.++.|.+++
T Consensus 221 p~~~~gg~al~~~a~~rl~L~r~~ 244 (366)
T 1xp8_A 221 PETTTGGRALKFYASVRLDVRKIG 244 (366)
T ss_dssp -----CHHHHHHHCSEEEEEEEES
T ss_pred ccccCCcchhhheeeEEEEEEecc
Confidence 356788888887665
No 394
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=47.81 E-value=4.9 Score=38.04 Aligned_cols=11 Identities=36% Similarity=0.749 Sum_probs=8.8
Q ss_pred ccCCCCCCCcccc
Q psy7365 79 LGPSGITLGLHTL 91 (601)
Q Consensus 79 ~g~~g~~~g~~~~ 91 (601)
.||||+ ||||+
T Consensus 29 ~G~Ngs--GKSti 39 (203)
T 3qks_A 29 IGQNGS--GKSSL 39 (203)
T ss_dssp ECCTTS--SHHHH
T ss_pred EcCCCC--CHHHH
Confidence 899999 56654
No 395
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=47.62 E-value=6 Score=37.27 Aligned_cols=18 Identities=28% Similarity=0.490 Sum_probs=11.6
Q ss_pred cccCCCCCCCccccchhhhHHHhcc
Q psy7365 78 PLGPSGITLGLHTLGLEFVSRSMLM 102 (601)
Q Consensus 78 ~~g~~g~~~g~~~~g~~~~~~~~l~ 102 (601)
-.||||+ ||| |+..+++.
T Consensus 6 i~GPSG~--GK~-----Tl~~~L~~ 23 (186)
T 1ex7_A 6 ISGPSGT--GKS-----TLLKKLFA 23 (186)
T ss_dssp EECCTTS--SHH-----HHHHHHHH
T ss_pred EECCCCC--CHH-----HHHHHHHH
Confidence 3799999 455 45555543
No 396
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=47.31 E-value=6.7 Score=36.31 Aligned_cols=49 Identities=16% Similarity=0.289 Sum_probs=26.6
Q ss_pred CCCCEEEEECCCC-CCCHHHHHHHH-HHHHHHHhCCcEEEEE-ccChhHHHh
Q psy7365 447 GNTPLIFLDEPTS-GMDPGARRFLW-TCIERAVSEGRCVILT-SHNMEECEA 495 (601)
Q Consensus 447 ~~P~lLlLDEPTs-GLD~~~~~~i~-~lL~~l~~~G~tVlls-THdl~e~~~ 495 (601)
.++++|++||+-. .+++..+..+. .++.....++..+|++ .+++++...
T Consensus 114 ~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~~~~l~~ 165 (202)
T 2w58_A 114 KKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFDMQQLAH 165 (202)
T ss_dssp HHSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSCHHHHHH
T ss_pred cCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHH
Confidence 3578999999922 33433344344 4665543444445554 556666554
No 397
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=46.48 E-value=3.1 Score=38.19 Aligned_cols=33 Identities=18% Similarity=0.185 Sum_probs=21.3
Q ss_pred eecccCCCCCCCccccchhhhHHHhccCCCCCCeeEEE-Ecc
Q psy7365 76 EQPLGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAK-IYD 116 (601)
Q Consensus 76 ~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~-~~g 116 (601)
+.-.|++|+ |||| ++ +.|++.+.+..|.+. +++
T Consensus 16 i~l~G~~Gs--GKsT-----~~-~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 16 VWLTGLPGS--GKTT-----IA-TRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp EEEECCTTS--SHHH-----HH-HHHHHHHHHTTCCEEEEEH
T ss_pred EEEEcCCCC--CHHH-----HH-HHHHHHHHhcCCeEEEeeH
Confidence 344899999 4555 44 467777776666653 444
No 398
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=46.36 E-value=0.15 Score=55.96 Aligned_cols=56 Identities=13% Similarity=0.007 Sum_probs=40.8
Q ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHH--HhcCCEEEEecCCccc
Q psy7365 279 STVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEA--DLLGDRIAIIAAGKLQ 343 (601)
Q Consensus 279 ~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~--~~l~Drv~vL~~GkIv 343 (601)
++||+ ||++.+|| .+..+..-|. +.-++++.+++|+|+++ .+++++++.++.+.++
T Consensus 34 dvlLm-p~~s~~~p-~~v~l~~eLt-------~~~~~~iP~vsa~md~~t~~~la~~ia~~gg~gii 91 (514)
T 1jcn_A 34 DFLIL-PGFIDFIA-DEVDLTSALT-------RKITLKTPLISSPMDTVTEADMAIAMALMGGIGFI 91 (514)
T ss_dssp GEEEC-CCCCCSCG-GGCBCCEESS-------SSCEESSCEEECCCTTTCSHHHHHHHHHTTCEEEE
T ss_pred cEEec-cCccCCCc-ceeEEEeecc-------CCeeEeceEEEEehhhhhhhhHHHHHHhcCCeeEE
Confidence 79999 99999999 4433332121 12357788899999998 8888888887766554
No 399
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=46.33 E-value=6.6 Score=34.93 Aligned_cols=12 Identities=25% Similarity=0.094 Sum_probs=8.8
Q ss_pred cccCCCCCCCcccc
Q psy7365 78 PLGPSGITLGLHTL 91 (601)
Q Consensus 78 ~~g~~g~~~g~~~~ 91 (601)
-.||+|+ ||||+
T Consensus 6 l~G~~Gs--GKsT~ 17 (173)
T 3kb2_A 6 LEGPDCC--FKSTV 17 (173)
T ss_dssp EECSSSS--SHHHH
T ss_pred EECCCCC--CHHHH
Confidence 3899999 56554
No 400
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=46.15 E-value=2.6 Score=42.74 Aligned_cols=72 Identities=7% Similarity=-0.027 Sum_probs=43.9
Q ss_pred ccccccCCCCcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCC
Q psy7365 371 KSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTP 450 (601)
Q Consensus 371 ~~~ig~v~Q~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~ 450 (601)
++.+|++ |...+++.+++.+++.+...++.... ....+....+.+ +|+..+.+.+.+|+
T Consensus 128 ~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~------------------~i~~P~~~~~~~--~~~~~~~~~~~~~~ 186 (308)
T 1sq5_A 128 LKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVP------------------NVTAPVYSHLIY--DVIPDGDKTVVQPD 186 (308)
T ss_dssp HHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCS------------------CEEECCEETTTT--EECTTCCEEEC-CC
T ss_pred HHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCC------------------ceeccccccccc--CcccccceecCCCC
Confidence 4568999 87778888999999987665543110 011222222222 33332224456799
Q ss_pred EEEEECCCCCCCH
Q psy7365 451 LIFLDEPTSGMDP 463 (601)
Q Consensus 451 lLlLDEPTsGLD~ 463 (601)
++|+|.|....++
T Consensus 187 ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 187 ILILEGLNVLQSG 199 (308)
T ss_dssp EEEEECTTTTCCG
T ss_pred EEEECchhhCCCc
Confidence 9999999998874
No 401
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=45.77 E-value=4 Score=39.55 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=13.9
Q ss_pred cccCCCCCCCccccchhhhHHHhccCCCC
Q psy7365 78 PLGPSGITLGLHTLGLEFVSRSMLMGMLP 106 (601)
Q Consensus 78 ~~g~~g~~~g~~~~g~~~~~~~~l~Gl~~ 106 (601)
-.||+|+ |||| ++ +.|++.+.
T Consensus 50 l~G~~Gt--GKT~-----la-~~la~~~~ 70 (257)
T 1lv7_A 50 MVGPPGT--GKTL-----LA-KAIAGEAK 70 (257)
T ss_dssp EECCTTS--CHHH-----HH-HHHHHHHT
T ss_pred EECcCCC--CHHH-----HH-HHHHHHcC
Confidence 3899999 5555 44 46666543
No 402
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=45.56 E-value=28 Score=32.64 Aligned_cols=52 Identities=23% Similarity=0.284 Sum_probs=39.7
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCh----------hHHHhhCCEEEEEe
Q psy7365 448 NTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM----------EECEALCTKLTIMV 504 (601)
Q Consensus 448 ~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl----------~e~~~l~drv~iL~ 504 (601)
+.+++++||--- +|+.. .+.++++...|..||++.++. .++..+||.|.-|+
T Consensus 81 ~~dvViIDEaqf-l~~~~----v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDEI----VEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTHH----HHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHHH----HHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 579999999433 66442 556777777799999999866 67778999998775
No 403
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=45.53 E-value=6.8 Score=36.64 Aligned_cols=12 Identities=58% Similarity=0.899 Sum_probs=8.8
Q ss_pred cccCCCCCCCcccc
Q psy7365 78 PLGPSGITLGLHTL 91 (601)
Q Consensus 78 ~~g~~g~~~g~~~~ 91 (601)
-+||||+ ||||+
T Consensus 17 l~G~sGs--GKsTl 28 (204)
T 2qor_A 17 VCGPSGV--GKGTL 28 (204)
T ss_dssp EECCTTS--CHHHH
T ss_pred EECCCCC--CHHHH
Confidence 3899999 55554
No 404
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=45.42 E-value=18 Score=37.42 Aligned_cols=59 Identities=20% Similarity=0.211 Sum_probs=46.7
Q ss_pred CCCEEEEECCCCCC---CHHHHHHHHHHHHHHHhCCcEEEEEccChhHHH------------hhCCEEEEEeCC
Q psy7365 448 NTPLIFLDEPTSGM---DPGARRFLWTCIERAVSEGRCVILTSHNMEECE------------ALCTKLTIMVNG 506 (601)
Q Consensus 448 ~P~lLlLDEPTsGL---D~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~------------~l~drv~iL~~G 506 (601)
.|.++++||--.=+ +|.....+.+++++.++.|..++++||+++.+. .-|+..+++...
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~~ 335 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQG 335 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSCC
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCCC
Confidence 38999999976666 477888889999998888999999999998654 346666666543
No 405
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=43.84 E-value=3.5 Score=37.70 Aligned_cols=69 Identities=13% Similarity=0.034 Sum_probs=39.3
Q ss_pred cchhHHHhcCCEEEEecCCccccccCccccc------cccccccccccccCCcccccccccCCCCcccCCCCCHHHHHHH
Q psy7365 322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK------NSFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLEF 395 (601)
Q Consensus 322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk------~~~g~g~~igld~~~~~~~~~ig~v~Q~~~l~~~lTv~E~L~~ 395 (601)
+++++...-++.++++++.. .|++++++ +..+.....+.++......+ .+++|+..+| .+|+.|++.+
T Consensus 24 ~~vsl~i~~Ge~v~L~G~nG---aGKTTLlr~l~g~l~~~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~e~l~~ 97 (158)
T 1htw_A 24 ILLKLHTEKAIMVYLNGDLG---AGKTTLTRGMLQGIGHQGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADPEELEF 97 (158)
T ss_dssp HHHHHCCSSCEEEEEECSTT---SSHHHHHHHHHHHTTCCSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCTTHHHH
T ss_pred hccccccCCCCEEEEECCCC---CCHHHHHHHHHHhCCCCCeEEECCEeeeeeccCC--Ccceeccccc-cCCcHHHHHH
Confidence 45566666777888887421 45554432 22233333333332111111 3799998888 8999999976
Q ss_pred h
Q psy7365 396 Y 396 (601)
Q Consensus 396 ~ 396 (601)
.
T Consensus 98 ~ 98 (158)
T 1htw_A 98 M 98 (158)
T ss_dssp S
T ss_pred c
Confidence 4
No 406
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=43.82 E-value=3.9 Score=37.74 Aligned_cols=28 Identities=25% Similarity=0.188 Sum_probs=16.5
Q ss_pred eecccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEcc
Q psy7365 76 EQPLGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYD 116 (601)
Q Consensus 76 ~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g 116 (601)
+.-.|++|| |||| ++. .|+.. |...++.
T Consensus 11 I~i~G~~Gs--GKST-----~~~-~La~~-----g~~~id~ 38 (203)
T 1uf9_A 11 IGITGNIGS--GKST-----VAA-LLRSW-----GYPVLDL 38 (203)
T ss_dssp EEEEECTTS--CHHH-----HHH-HHHHT-----TCCEEEH
T ss_pred EEEECCCCC--CHHH-----HHH-HHHHC-----CCEEEcc
Confidence 344899999 4554 453 55543 5555543
No 407
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=43.65 E-value=12 Score=34.83 Aligned_cols=43 Identities=16% Similarity=0.223 Sum_probs=30.2
Q ss_pred CCCCEEEEECCCCC-CCHHHHHHHHHHHHHHHhCCcE-EEEEccC
Q psy7365 447 GNTPLIFLDEPTSG-MDPGARRFLWTCIERAVSEGRC-VILTSHN 489 (601)
Q Consensus 447 ~~P~lLlLDEPTsG-LD~~~~~~i~~lL~~l~~~G~t-VllsTHd 489 (601)
.+|.++++||...- -+......+.+++....+.+.. +|++|+.
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~ 147 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASA 147 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESS
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 57899999996442 1233377788888887666655 7777764
No 408
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=43.49 E-value=5.2 Score=37.12 Aligned_cols=19 Identities=32% Similarity=0.354 Sum_probs=13.1
Q ss_pred ecccCCCCCCCccccchhhhHHHhccC
Q psy7365 77 QPLGPSGITLGLHTLGLEFVSRSMLMG 103 (601)
Q Consensus 77 ~~~g~~g~~~g~~~~g~~~~~~~~l~G 103 (601)
.-+||||| |||| ++ ++|++
T Consensus 5 ~i~G~~Gs--GKST-----l~-~~L~~ 23 (204)
T 2if2_A 5 GLTGNIGC--GKST-----VA-QMFRE 23 (204)
T ss_dssp EEEECTTS--SHHH-----HH-HHHHH
T ss_pred EEECCCCc--CHHH-----HH-HHHHH
Confidence 34899999 4554 44 47777
No 409
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=42.91 E-value=4.3 Score=43.22 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=30.5
Q ss_pred hhhcccccccccCCCccceee--------------cceEEeec------ccCCCCCCCccccchhhhHHHhccCCC
Q psy7365 50 SLFESLSENRDKLGIDSYGIS--------------DTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGML 105 (601)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~ 105 (601)
+.|++|+..|.. ....++ |+++.+.+ .||+|+ ||||| . ++|++.+
T Consensus 134 i~Fe~ltp~yP~---er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~--GKTtL-----l-~~Iar~i 198 (422)
T 3ice_A 134 ILFENLTPLHAN---SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKA--GKTML-----L-QNIAQSI 198 (422)
T ss_dssp CCTTTSCEESCC---SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSS--SHHHH-----H-HHHHHHH
T ss_pred ceeccccccCCC---CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCC--ChhHH-----H-HHHHHHH
Confidence 348888888632 344677 88888876 999999 56654 4 4565554
No 410
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=42.80 E-value=9.6 Score=35.16 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=13.4
Q ss_pred ecceEEeecccCCCCCCCcccc
Q psy7365 70 SDTSLEEQPLGPSGITLGLHTL 91 (601)
Q Consensus 70 ~~~~~~~~~~g~~g~~~g~~~~ 91 (601)
.+-.+.+.-+|++|+ |||||
T Consensus 20 ~~~~~ki~vvG~~~v--GKSsL 39 (195)
T 3cbq_A 20 KDGIFKVMLVGESGV--GKSTL 39 (195)
T ss_dssp --CEEEEEEECSTTS--SHHHH
T ss_pred CCcEEEEEEECCCCC--CHHHH
Confidence 445678888999999 45543
No 411
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=42.62 E-value=4.8 Score=36.45 Aligned_cols=13 Identities=31% Similarity=0.396 Sum_probs=6.4
Q ss_pred ecccCCCCCCCcccc
Q psy7365 77 QPLGPSGITLGLHTL 91 (601)
Q Consensus 77 ~~~g~~g~~~g~~~~ 91 (601)
.-.|++|+ ||||+
T Consensus 9 ~l~G~~Gs--GKST~ 21 (183)
T 2vli_A 9 WINGPFGV--GKTHT 21 (183)
T ss_dssp EEECCC------CHH
T ss_pred EEECCCCC--CHHHH
Confidence 34899999 56665
No 412
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=42.42 E-value=8.4 Score=34.00 Aligned_cols=12 Identities=25% Similarity=0.326 Sum_probs=8.7
Q ss_pred cccCCCCCCCcccc
Q psy7365 78 PLGPSGITLGLHTL 91 (601)
Q Consensus 78 ~~g~~g~~~g~~~~ 91 (601)
-.||+|+ ||||+
T Consensus 6 l~G~~Gs--GKsT~ 17 (179)
T 3lw7_A 6 ITGMPGS--GKSEF 17 (179)
T ss_dssp EECCTTS--CHHHH
T ss_pred EECCCCC--CHHHH
Confidence 4899999 45554
No 413
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=42.27 E-value=21 Score=38.20 Aligned_cols=52 Identities=8% Similarity=0.089 Sum_probs=37.7
Q ss_pred HHHHHHhCCCCEEEEECCC-CC--CCHHHHHHHHHHHHHHHhCCcEEEEEccChh
Q psy7365 440 STAIALLGNTPLIFLDEPT-SG--MDPGARRFLWTCIERAVSEGRCVILTSHNME 491 (601)
Q Consensus 440 ~lA~AL~~~P~lLlLDEPT-sG--LD~~~~~~i~~lL~~l~~~G~tVllsTHdl~ 491 (601)
+++.+...+++++|+|+|. .+ .|+....++.++++........+++.+|.-.
T Consensus 171 al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq 225 (433)
T 3kl4_A 171 GVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQ 225 (433)
T ss_dssp HHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGG
T ss_pred HHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccch
Confidence 4556666799999999986 45 8998888888877766444555666666543
No 414
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=41.67 E-value=17 Score=33.80 Aligned_cols=29 Identities=21% Similarity=0.427 Sum_probs=20.1
Q ss_pred ceEEeecccCCCCCCCccccchhhhHHHhccCCCCC
Q psy7365 72 TSLEEQPLGPSGITLGLHTLGLEFVSRSMLMGMLPV 107 (601)
Q Consensus 72 ~~~~~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~ 107 (601)
-.+.+.-+|++|+ ||||+.++++.+..++
T Consensus 25 ~~~ki~lvG~~~v-------GKSsLi~~l~~~~~~~ 53 (201)
T 2ew1_A 25 FLFKIVLIGNAGV-------GKTCLVRRFTQGLFPP 53 (201)
T ss_dssp EEEEEEEEESTTS-------SHHHHHHHHHHSSCCT
T ss_pred cceEEEEECcCCC-------CHHHHHHHHHhCCCCC
Confidence 3567777999999 5555677777665443
No 415
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=41.02 E-value=9.2 Score=38.44 Aligned_cols=42 Identities=21% Similarity=0.218 Sum_probs=31.7
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChh
Q psy7365 448 NTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 491 (601)
Q Consensus 448 ~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~ 491 (601)
++.++++|| ...+++..+..+.+.+.+... ...+|++|++.+
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchh
Confidence 678999999 788999988888888877533 345666666554
No 416
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=40.64 E-value=50 Score=35.11 Aligned_cols=59 Identities=10% Similarity=0.075 Sum_probs=38.9
Q ss_pred CCCC--EEEEECCCC----CCC---HHHHHHHHHHHHHHHhC-CcEEEEEccChh-------------------HHHhhC
Q psy7365 447 GNTP--LIFLDEPTS----GMD---PGARRFLWTCIERAVSE-GRCVILTSHNME-------------------ECEALC 497 (601)
Q Consensus 447 ~~P~--lLlLDEPTs----GLD---~~~~~~i~~lL~~l~~~-G~tVllsTHdl~-------------------e~~~l~ 497 (601)
++|+ ++++|--+. +.. .....++...|+.++++ |.+||+++|--. -++..|
T Consensus 307 ~~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~krp~lsdlr~Sg~ieq~a 386 (444)
T 3bgw_A 307 NPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDA 386 (444)
T ss_dssp SCSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCGGGGGSSCCCCCGGGCCSCSHHHHHC
T ss_pred hCCCCeEEEEecHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCccccccCCCCCchhhhhhhhhHHhhC
Confidence 5899 999995321 111 12234555666666655 999999999321 277889
Q ss_pred CEEEEEeC
Q psy7365 498 TKLTIMVN 505 (601)
Q Consensus 498 drv~iL~~ 505 (601)
|-|++|..
T Consensus 387 D~Vi~L~r 394 (444)
T 3bgw_A 387 DIIEFLYR 394 (444)
T ss_dssp SEEEECCB
T ss_pred CEEEEEec
Confidence 99998864
No 417
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=40.62 E-value=11 Score=34.11 Aligned_cols=24 Identities=13% Similarity=0.119 Sum_probs=16.4
Q ss_pred eEEeecccCCCCCCCccccchhhhHHHhccC
Q psy7365 73 SLEEQPLGPSGITLGLHTLGLEFVSRSMLMG 103 (601)
Q Consensus 73 ~~~~~~~g~~g~~~g~~~~g~~~~~~~~l~G 103 (601)
.+.+.-+|++|+ ||||+.+++..+
T Consensus 16 ~~ki~ivG~~~v-------GKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNA-------GKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTS-------SHHHHHHHHCCS
T ss_pred ceEEEEECCCCC-------CHHHHHHHHhcC
Confidence 466777999999 455556655544
No 418
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=40.24 E-value=5.7 Score=38.74 Aligned_cols=34 Identities=21% Similarity=0.168 Sum_probs=21.3
Q ss_pred eecccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccC
Q psy7365 76 EQPLGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDI 119 (601)
Q Consensus 76 ~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~ 119 (601)
+.-+||+|| ||||+ ++ .|+..+. .|.+.++|..+
T Consensus 35 i~l~G~~Gs--GKSTl-----a~-~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 35 ILLGGQSGA--GKTTI-----HR-IKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp EEEESCGGG--TTHHH-----HH-HHHHHTT--TCCEEECGGGG
T ss_pred EEEECCCCC--CHHHH-----HH-HHHHhcC--CCcEEEecHHH
Confidence 344899999 56654 43 5555443 25677887665
No 419
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=38.26 E-value=24 Score=32.41 Aligned_cols=43 Identities=16% Similarity=0.232 Sum_probs=31.0
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChh
Q psy7365 447 GNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 491 (601)
Q Consensus 447 ~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~ 491 (601)
.+|.++++||.-. +|+.....+...+.+. ..+..+|++|++.+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChH
Confidence 4688999999765 7887777776666532 23567888888754
No 420
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=37.31 E-value=8.7 Score=40.17 Aligned_cols=22 Identities=18% Similarity=0.218 Sum_probs=14.0
Q ss_pred EEeecccCCCCCCCccccchhhhHHHhccC
Q psy7365 74 LEEQPLGPSGITLGLHTLGLEFVSRSMLMG 103 (601)
Q Consensus 74 ~~~~~~g~~g~~~g~~~~g~~~~~~~~l~G 103 (601)
+.+.-+|++|+ |||| +.+ .|+|
T Consensus 3 ~kI~IVG~pnv--GKST-----L~n-~Lt~ 24 (363)
T 1jal_A 3 FKCGIVGLPNV--GKST-----LFN-ALTK 24 (363)
T ss_dssp CEEEEECCTTS--SHHH-----HHH-HHHH
T ss_pred CEEEEECCCCC--CHHH-----HHH-HHHC
Confidence 45566899999 4554 454 5555
No 421
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=37.28 E-value=19 Score=31.16 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=16.8
Q ss_pred EEeecccCCCCCCCccccchhhhHHHhccCC
Q psy7365 74 LEEQPLGPSGITLGLHTLGLEFVSRSMLMGM 104 (601)
Q Consensus 74 ~~~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl 104 (601)
+.+.-+|++|+ ||||+.++++.|-
T Consensus 4 ~~i~v~G~~~~-------GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGV-------GKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTS-------SHHHHHHHHHHSC
T ss_pred EEEEEECCCCC-------CHHHHHHHHHcCC
Confidence 56667999999 4555567666654
No 422
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=37.27 E-value=5.3 Score=40.08 Aligned_cols=31 Identities=19% Similarity=0.320 Sum_probs=0.0
Q ss_pred ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccC
Q psy7365 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDI 119 (601)
Q Consensus 79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~ 119 (601)
.||+|+ ||||| .+.|++.+. .+.+.+++.++
T Consensus 55 ~Gp~Gt--GKT~l------a~ala~~~~--~~~i~v~~~~l 85 (301)
T 3cf0_A 55 YGPPGC--GKTLL------AKAIANECQ--ANFISIKGPEL 85 (301)
T ss_dssp ECSSSS--SHHHH------HHHHHHHTT--CEEEEECHHHH
T ss_pred ECCCCc--CHHHH------HHHHHHHhC--CCEEEEEhHHH
No 423
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=36.80 E-value=1.9e+02 Score=24.41 Aligned_cols=44 Identities=18% Similarity=0.141 Sum_probs=39.3
Q ss_pred CCCCEEEEE-CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCh
Q psy7365 447 GNTPLIFLD-EPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490 (601)
Q Consensus 447 ~~P~lLlLD-EPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl 490 (601)
.+|+.++|| ...+.+|..+...+.++.+++.+.|..+.++.-.-
T Consensus 47 ~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~ 91 (130)
T 4dgh_A 47 ETPQILILRLKWVPFMDITGIQTLEEMIQSFHKRGIKVLISGANS 91 (130)
T ss_dssp SCCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred cCCCEEEEECCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 478999999 89999999999999999999998899998886543
No 424
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=36.66 E-value=4.3 Score=40.28 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=21.0
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHH
Q psy7365 278 ASTVILDEPTSGVDPYSRRSIWELLIK 304 (601)
Q Consensus 278 ~~~liLDEPtsgLD~~~~~~l~~~l~~ 304 (601)
..++++||. ..+++..+..+.+.+.+
T Consensus 120 ~~vl~lDEi-~~l~~~~~~~Ll~~le~ 145 (311)
T 4fcw_A 120 YSVILFDAI-EKAHPDVFNILLQMLDD 145 (311)
T ss_dssp SEEEEEETG-GGSCHHHHHHHHHHHHH
T ss_pred CeEEEEeCh-hhcCHHHHHHHHHHHhc
Confidence 369999998 56888888888888765
No 425
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=36.35 E-value=8.6 Score=37.76 Aligned_cols=44 Identities=9% Similarity=0.007 Sum_probs=22.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCE
Q psy7365 286 PTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDR 333 (601)
Q Consensus 286 PtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Dr 333 (601)
|+|+++......+++.+.+... ..+.+..+..|..+++...+++
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~----~~~~~~~~~~~~~~~~e~~~~~ 187 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAE----GKVTTNPIIPRYDEDIEREIKH 187 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHH----TCCCCCCCCCCCCHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHh----ccccCCCCCcCCCHHHHHHHHH
Confidence 6666666666666666655421 1222323344555555554444
No 426
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=35.76 E-value=21 Score=30.96 Aligned_cols=26 Identities=12% Similarity=0.287 Sum_probs=17.5
Q ss_pred eEEeecccCCCCCCCccccchhhhHHHhccCCC
Q psy7365 73 SLEEQPLGPSGITLGLHTLGLEFVSRSMLMGML 105 (601)
Q Consensus 73 ~~~~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl~ 105 (601)
.+.+.-+|++|+ ||||+.++++.+..
T Consensus 5 ~~~i~v~G~~~~-------GKssl~~~l~~~~~ 30 (168)
T 1z2a_A 5 AIKMVVVGNGAV-------GKSSMIQRYCKGIF 30 (168)
T ss_dssp EEEEEEECSTTS-------SHHHHHHHHHHCCC
T ss_pred eEEEEEECcCCC-------CHHHHHHHHHcCCC
Confidence 456677999999 55555776665543
No 427
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=35.35 E-value=5.1 Score=39.24 Aligned_cols=15 Identities=20% Similarity=0.279 Sum_probs=10.8
Q ss_pred CHHHHHHHHHHHHHH
Q psy7365 291 DPYSRRSIWELLIKV 305 (601)
Q Consensus 291 D~~~~~~l~~~l~~l 305 (601)
+|.-++.+.+.-+++
T Consensus 110 ~~~vr~~l~~~qr~~ 124 (233)
T 3r20_A 110 VPAVRTRLVDIQRKL 124 (233)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH
Confidence 567777777777765
No 428
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=35.12 E-value=21 Score=30.98 Aligned_cols=24 Identities=13% Similarity=0.185 Sum_probs=16.4
Q ss_pred EEeecccCCCCCCCccccchhhhHHHhccCC
Q psy7365 74 LEEQPLGPSGITLGLHTLGLEFVSRSMLMGM 104 (601)
Q Consensus 74 ~~~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl 104 (601)
+.+.-+|++|+ ||||+.++++.+-
T Consensus 4 ~~i~v~G~~~~-------GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAV-------GKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTS-------SHHHHHHHHHHSC
T ss_pred EEEEEECCCCC-------CHHHHHHHHhcCC
Confidence 55666999999 4555566666554
No 429
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=34.51 E-value=11 Score=36.96 Aligned_cols=20 Identities=35% Similarity=0.449 Sum_probs=13.8
Q ss_pred ecceEEeecccCCCCCCCcccc
Q psy7365 70 SDTSLEEQPLGPSGITLGLHTL 91 (601)
Q Consensus 70 ~~~~~~~~~~g~~g~~~g~~~~ 91 (601)
++..|.|.-+|++|+ |||||
T Consensus 5 ~g~~~~I~vvG~~g~--GKSTL 24 (274)
T 3t5d_A 5 SGFEFTLMVVGESGL--GKSTL 24 (274)
T ss_dssp --CEEEEEEEECTTS--SHHHH
T ss_pred CccEEEEEEECCCCC--CHHHH
Confidence 346788888999999 45544
No 430
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=33.97 E-value=27 Score=35.02 Aligned_cols=60 Identities=17% Similarity=0.122 Sum_probs=36.9
Q ss_pred CCCCEEEEECCCCCC--------CHHHH----HHHHHHHHHHH-hCCcEEEEEccChh----------------HHHhhC
Q psy7365 447 GNTPLIFLDEPTSGM--------DPGAR----RFLWTCIERAV-SEGRCVILTSHNME----------------ECEALC 497 (601)
Q Consensus 447 ~~P~lLlLDEPTsGL--------D~~~~----~~i~~lL~~l~-~~G~tVllsTHdl~----------------e~~~l~ 497 (601)
.+++++++|.-++-. +...+ .++...|+.++ +.|.+||+++|-.. .++..|
T Consensus 203 ~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~~g~~~~~~g~~~~~~~~ 282 (322)
T 2i1q_A 203 NNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAKPDAFFGMAEQAIGGHIVGHAA 282 (322)
T ss_dssp CEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECEECC-------CCEESSHHHHHHHC
T ss_pred cCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECceeecCCCCCCCCcCCCCcHHHHhcC
Confidence 579999999877532 12222 33444455554 45899999988432 245567
Q ss_pred CEEEEEeCC
Q psy7365 498 TKLTIMVNG 506 (601)
Q Consensus 498 drv~iL~~G 506 (601)
|.++.+++.
T Consensus 283 d~~i~l~~~ 291 (322)
T 2i1q_A 283 TFRFFVRKG 291 (322)
T ss_dssp SEEEEEEEC
T ss_pred cEEEEEEec
Confidence 777777643
No 431
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=33.76 E-value=1e+02 Score=26.60 Aligned_cols=44 Identities=16% Similarity=0.277 Sum_probs=38.9
Q ss_pred CCCCEEEEE-CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCh
Q psy7365 447 GNTPLIFLD-EPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490 (601)
Q Consensus 447 ~~P~lLlLD-EPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl 490 (601)
.+++.++|| ...+.+|..+...+.++.+++.+.|..+.++.-.-
T Consensus 50 ~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~ 94 (135)
T 4dgf_A 50 ETPKVFILRMRRVPVIDATGMHALWEFQESCEKRGTILLLSGVSD 94 (135)
T ss_dssp SCCSEEEEECTTCSCBCHHHHHHHHHHHHHHHHHTCEEEEESCCH
T ss_pred CCCcEEEEEcCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 378999999 89999999999999999999988899988886543
No 432
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=33.66 E-value=26 Score=30.45 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=16.2
Q ss_pred EEeecccCCCCCCCccccchhhhHHHhccCC
Q psy7365 74 LEEQPLGPSGITLGLHTLGLEFVSRSMLMGM 104 (601)
Q Consensus 74 ~~~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl 104 (601)
+.+.-+|+.|+ ||||+.++++.+-
T Consensus 4 ~~i~v~G~~~~-------GKssli~~l~~~~ 27 (172)
T 2erx_A 4 YRVAVFGAGGV-------GKSSLVLRFVKGT 27 (172)
T ss_dssp EEEEEECCTTS-------SHHHHHHHHHTCC
T ss_pred eEEEEECCCCC-------CHHHHHHHHHcCC
Confidence 55666999999 4555566666543
No 433
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=33.62 E-value=14 Score=33.00 Aligned_cols=13 Identities=31% Similarity=0.414 Sum_probs=9.0
Q ss_pred ecccCCCCCCCcccc
Q psy7365 77 QPLGPSGITLGLHTL 91 (601)
Q Consensus 77 ~~~g~~g~~~g~~~~ 91 (601)
.-.||+|+ ||||+
T Consensus 6 ~i~G~~Gs--GKST~ 18 (181)
T 1ly1_A 6 LTIGCPGS--GKSTW 18 (181)
T ss_dssp EEECCTTS--SHHHH
T ss_pred EEecCCCC--CHHHH
Confidence 34899999 45544
No 434
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=33.57 E-value=1.3e+02 Score=25.93 Aligned_cols=44 Identities=20% Similarity=0.151 Sum_probs=38.5
Q ss_pred CCCCEEEEE-CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCh
Q psy7365 447 GNTPLIFLD-EPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490 (601)
Q Consensus 447 ~~P~lLlLD-EPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl 490 (601)
.+++.++|| ...+.+|..+...+.++.+++.+.|..+.++.-.-
T Consensus 62 ~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~ 106 (143)
T 3llo_A 62 ENIHTVILDFTQVNFMDSVGVKTLAGIVKEYGDVGIYVYLAGCSA 106 (143)
T ss_dssp -CCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEEEESCCH
T ss_pred CCceEEEEECCCCccccHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 368899999 89999999999999999999988899988886543
No 435
>3oiz_A Antisigma-factor antagonist, STAS; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, STAS domain; 1.65A {Rhodobacter sphaeroides} PDB: 3lkl_A
Probab=33.52 E-value=41 Score=27.65 Aligned_cols=41 Identities=15% Similarity=0.071 Sum_probs=37.1
Q ss_pred CCCCEEEEE-CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEc
Q psy7365 447 GNTPLIFLD-EPTSGMDPGARRFLWTCIERAVSEGRCVILTS 487 (601)
Q Consensus 447 ~~P~lLlLD-EPTsGLD~~~~~~i~~lL~~l~~~G~tVllsT 487 (601)
.+|+.+++| .....+|..+...+.++.+++.++|.++.++.
T Consensus 42 ~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~ 83 (99)
T 3oiz_A 42 EALDRVVIDVSRAHIWDISSVQALDMAVLKFRREGAEVRIVG 83 (99)
T ss_dssp SCCSEEEEEEEEEEECSHHHHHHHHHHHHHHHHTTCEEEEES
T ss_pred CCCCEEEEECCCCCccCHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 467899999 88999999999999999999999999988874
No 436
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=33.45 E-value=14 Score=33.34 Aligned_cols=14 Identities=29% Similarity=0.311 Sum_probs=9.9
Q ss_pred eecccCCCCCCCcccc
Q psy7365 76 EQPLGPSGITLGLHTL 91 (601)
Q Consensus 76 ~~~~g~~g~~~g~~~~ 91 (601)
+.-.||+|+ ||||+
T Consensus 6 I~i~G~~Gs--GKsT~ 19 (192)
T 1kht_A 6 VVVTGVPGV--GSTTS 19 (192)
T ss_dssp EEEECCTTS--CHHHH
T ss_pred EEEECCCCC--CHHHH
Confidence 344899999 56654
No 437
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=32.74 E-value=25 Score=30.45 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=16.4
Q ss_pred EEeecccCCCCCCCccccchhhhHHHhccCC
Q psy7365 74 LEEQPLGPSGITLGLHTLGLEFVSRSMLMGM 104 (601)
Q Consensus 74 ~~~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl 104 (601)
+.+.-+|++|+ ||||+.++++.+-
T Consensus 4 ~ki~v~G~~~~-------GKssli~~l~~~~ 27 (167)
T 1c1y_A 4 YKLVVLGSGGV-------GKSALTVQFVQGI 27 (167)
T ss_dssp EEEEEECSTTS-------SHHHHHHHHHHCC
T ss_pred eEEEEECCCCC-------CHHHHHHHHHcCC
Confidence 45666999999 5555577666554
No 438
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=32.73 E-value=24 Score=30.65 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=17.2
Q ss_pred eEEeecccCCCCCCCccccchhhhHHHhccCC
Q psy7365 73 SLEEQPLGPSGITLGLHTLGLEFVSRSMLMGM 104 (601)
Q Consensus 73 ~~~~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl 104 (601)
.+.+.-+|+.|+ ||||+.++++.+-
T Consensus 6 ~~~i~v~G~~~~-------GKSsli~~l~~~~ 30 (170)
T 1z0j_A 6 ELKVCLLGDTGV-------GKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEEECCTTS-------SHHHHHHHHHHSC
T ss_pred ceEEEEECcCCC-------CHHHHHHHHHcCC
Confidence 456677999999 5555677666554
No 439
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=32.34 E-value=15 Score=33.21 Aligned_cols=14 Identities=43% Similarity=0.496 Sum_probs=9.9
Q ss_pred eecccCCCCCCCcccc
Q psy7365 76 EQPLGPSGITLGLHTL 91 (601)
Q Consensus 76 ~~~~g~~g~~~g~~~~ 91 (601)
+.-+||+|| ||||+
T Consensus 7 I~l~G~~Gs--GKST~ 20 (186)
T 3cm0_A 7 VIFLGPPGA--GKGTQ 20 (186)
T ss_dssp EEEECCTTS--CHHHH
T ss_pred EEEECCCCC--CHHHH
Confidence 445899999 55554
No 440
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=32.25 E-value=16 Score=36.94 Aligned_cols=50 Identities=18% Similarity=0.239 Sum_probs=26.3
Q ss_pred hCCCCEEEEECCC-CCCCHHHHHHHHH-HHHHHHhCCcEEEEEcc-ChhHHHh
Q psy7365 446 LGNTPLIFLDEPT-SGMDPGARRFLWT-CIERAVSEGRCVILTSH-NMEECEA 495 (601)
Q Consensus 446 ~~~P~lLlLDEPT-sGLD~~~~~~i~~-lL~~l~~~G~tVllsTH-dl~e~~~ 495 (601)
+.++++||+||.- ..+++..+..++. +|.....+++.+|++|+ .+++...
T Consensus 212 ~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~~~~l~~ 264 (308)
T 2qgz_A 212 VKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYSFADLER 264 (308)
T ss_dssp HHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSCHHHHHT
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHH
Confidence 3468999999982 3445444554544 66554333455566665 5555544
No 441
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=31.77 E-value=19 Score=36.75 Aligned_cols=45 Identities=13% Similarity=0.200 Sum_probs=27.3
Q ss_pred ccceeecceEEeec-----ccCCCCCCCccccchhhhHHHhcc-C--CCCCCeeEEEEcc
Q psy7365 65 DSYGISDTSLEEQP-----LGPSGITLGLHTLGLEFVSRSMLM-G--MLPVSSGTAKIYD 116 (601)
Q Consensus 65 ~~~~~~~~~~~~~~-----~g~~g~~~g~~~~g~~~~~~~~l~-G--l~~~~~G~v~~~g 116 (601)
+...+++..+++.- +|+||+ ||||++..++. | ++..|...|...+
T Consensus 131 ~~~~~H~~~v~~~g~~vl~~G~sG~-------GKSt~a~~l~~~g~~lv~dD~~~i~~~~ 183 (314)
T 1ko7_A 131 RTTSLHGVLVDVYGVGVLITGDSGI-------GKSETALELIKRGHRLVADDNVEIREIS 183 (314)
T ss_dssp EEEEEESEEEEETTEEEEEEESTTS-------SHHHHHHHHHHTTCEEEESSEEEEEESS
T ss_pred cceeeeEEEEEECCEEEEEEeCCCC-------CHHHHHHHHHhcCCceecCCeEEEEEcC
Confidence 34578888887754 999999 45555665543 2 3444555554443
No 442
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=31.66 E-value=56 Score=31.40 Aligned_cols=52 Identities=17% Similarity=0.244 Sum_probs=39.9
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccC----------hhHHHhhCCEEEEEe
Q psy7365 448 NTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN----------MEECEALCTKLTIMV 504 (601)
Q Consensus 448 ~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHd----------l~e~~~l~drv~iL~ 504 (601)
+.+++++||--- +|+. . .+.+++++..|+.||++.+| ...+..+||.|.-|+
T Consensus 101 ~~dvViIDEaQF-~~~~---~-V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD---I-VEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT---H-HHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH---H-HHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 589999999754 6543 2 36677777779999999994 456778899998875
No 443
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=31.52 E-value=15 Score=36.59 Aligned_cols=32 Identities=16% Similarity=0.128 Sum_probs=17.9
Q ss_pred eecccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccc
Q psy7365 76 EQPLGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDH 117 (601)
Q Consensus 76 ~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~ 117 (601)
+.-.||||+ ||||+ +..+. .-++ .|.+.+++.
T Consensus 36 ivl~G~sGs--GKSTl-----a~~L~-~~~~--~~~~~Is~D 67 (287)
T 1gvn_B 36 FLLGGQPGS--GKTSL-----RSAIF-EETQ--GNVIVIDND 67 (287)
T ss_dssp EEEECCTTS--CTHHH-----HHHHH-HHTT--TCCEEECTH
T ss_pred EEEECCCCC--CHHHH-----HHHHH-HHhC--CCeEEEech
Confidence 344899999 56554 54332 2222 356677653
No 444
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=31.43 E-value=25 Score=30.44 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=17.9
Q ss_pred eEEeecccCCCCCCCccccchhhhHHHhccCCC
Q psy7365 73 SLEEQPLGPSGITLGLHTLGLEFVSRSMLMGML 105 (601)
Q Consensus 73 ~~~~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl~ 105 (601)
.+.+.-+|++|+ ||||+.++++.+-.
T Consensus 6 ~~~i~v~G~~~~-------GKssli~~l~~~~~ 31 (170)
T 1r2q_A 6 QFKLVLLGESAV-------GKSSLVLRFVKGQF 31 (170)
T ss_dssp EEEEEEECSTTS-------SHHHHHHHHHHSCC
T ss_pred eEEEEEECCCCC-------CHHHHHHHHHcCCC
Confidence 456677999999 55556776766543
No 445
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=31.22 E-value=25 Score=30.58 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=17.0
Q ss_pred eEEeecccCCCCCCCccccchhhhHHHhccCC
Q psy7365 73 SLEEQPLGPSGITLGLHTLGLEFVSRSMLMGM 104 (601)
Q Consensus 73 ~~~~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl 104 (601)
.+.+.-+|++|+ ||||+.++++.+-
T Consensus 3 ~~~i~v~G~~~~-------GKssli~~l~~~~ 27 (170)
T 1g16_A 3 IMKILLIGDSGV-------GKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEEEESTTS-------SHHHHHHHHHHCC
T ss_pred ceEEEEECcCCC-------CHHHHHHHHHhCC
Confidence 356677999999 5555677666544
No 446
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=30.81 E-value=26 Score=30.69 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=16.0
Q ss_pred eEEeecccCCCCCCCccccchhhhHHHhccC
Q psy7365 73 SLEEQPLGPSGITLGLHTLGLEFVSRSMLMG 103 (601)
Q Consensus 73 ~~~~~~~g~~g~~~g~~~~g~~~~~~~~l~G 103 (601)
.+.+.-+|++|+ ||||+.++++.+
T Consensus 4 ~~ki~i~G~~~v-------GKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGV-------GKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTS-------SHHHHHHHHHCC
T ss_pred EEEEEEECCCCc-------cHHHHHHHHhcC
Confidence 456777999999 455556655543
No 447
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=30.55 E-value=27 Score=30.36 Aligned_cols=26 Identities=15% Similarity=0.063 Sum_probs=17.9
Q ss_pred ceEEeecccCCCCCCCccccchhhhHHHhccCC
Q psy7365 72 TSLEEQPLGPSGITLGLHTLGLEFVSRSMLMGM 104 (601)
Q Consensus 72 ~~~~~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl 104 (601)
-.+.+.-+|++|+ ||||+.++++.+-
T Consensus 5 ~~~~i~v~G~~~~-------GKssli~~l~~~~ 30 (170)
T 1z08_A 5 YSFKVVLLGEGCV-------GKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEEEECCTTS-------CHHHHHHHHHHCC
T ss_pred cceEEEEECcCCC-------CHHHHHHHHHcCC
Confidence 3567777999999 4555566666554
No 448
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=30.55 E-value=16 Score=33.17 Aligned_cols=14 Identities=29% Similarity=0.211 Sum_probs=9.8
Q ss_pred eecccCCCCCCCcccc
Q psy7365 76 EQPLGPSGITLGLHTL 91 (601)
Q Consensus 76 ~~~~g~~g~~~g~~~~ 91 (601)
+.-.||+|+ ||||+
T Consensus 8 I~l~G~~Gs--GKST~ 21 (193)
T 2rhm_A 8 IIVTGHPAT--GKTTL 21 (193)
T ss_dssp EEEEESTTS--SHHHH
T ss_pred EEEECCCCC--CHHHH
Confidence 344899999 56655
No 449
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=30.45 E-value=28 Score=29.97 Aligned_cols=24 Identities=13% Similarity=0.252 Sum_probs=16.1
Q ss_pred EEeecccCCCCCCCccccchhhhHHHhccCC
Q psy7365 74 LEEQPLGPSGITLGLHTLGLEFVSRSMLMGM 104 (601)
Q Consensus 74 ~~~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl 104 (601)
+.+.-+|++|+ ||||+.++++.+-
T Consensus 5 ~~i~v~G~~~~-------GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGV-------GKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTS-------SHHHHHHHHHHSC
T ss_pred EEEEEECCCCC-------CHHHHHHHHHhCc
Confidence 55666999999 4555566665443
No 450
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=30.42 E-value=16 Score=33.00 Aligned_cols=13 Identities=31% Similarity=0.455 Sum_probs=9.4
Q ss_pred ecccCCCCCCCcccc
Q psy7365 77 QPLGPSGITLGLHTL 91 (601)
Q Consensus 77 ~~~g~~g~~~g~~~~ 91 (601)
.-.||+|+ ||||+
T Consensus 5 ~i~G~~Gs--GKsT~ 17 (194)
T 1nks_A 5 IVTGIPGV--GKSTV 17 (194)
T ss_dssp EEEECTTS--CHHHH
T ss_pred EEECCCCC--CHHHH
Confidence 34899999 56655
No 451
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=30.23 E-value=17 Score=33.01 Aligned_cols=13 Identities=31% Similarity=0.205 Sum_probs=9.0
Q ss_pred ecccCCCCCCCcccc
Q psy7365 77 QPLGPSGITLGLHTL 91 (601)
Q Consensus 77 ~~~g~~g~~~g~~~~ 91 (601)
.-.||+|| ||||+
T Consensus 4 ~l~G~~Gs--GKsT~ 16 (197)
T 2z0h_A 4 TFEGIDGS--GKSTQ 16 (197)
T ss_dssp EEECSTTS--SHHHH
T ss_pred EEECCCCC--CHHHH
Confidence 34799999 45554
No 452
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=30.12 E-value=28 Score=30.61 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=17.3
Q ss_pred eEEeecccCCCCCCCccccchhhhHHHhccCC
Q psy7365 73 SLEEQPLGPSGITLGLHTLGLEFVSRSMLMGM 104 (601)
Q Consensus 73 ~~~~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl 104 (601)
.+.+.-+|++|+ ||||+.++++.+.
T Consensus 8 ~~~i~v~G~~~~-------GKSsli~~l~~~~ 32 (182)
T 1ky3_A 8 ILKVIILGDSGV-------GKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEEECCTTS-------SHHHHHHHHHHSC
T ss_pred eEEEEEECCCCC-------CHHHHHHHHHhCc
Confidence 466777999999 4555566666554
No 453
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=29.70 E-value=26 Score=30.07 Aligned_cols=24 Identities=13% Similarity=0.295 Sum_probs=15.8
Q ss_pred EEeecccCCCCCCCccccchhhhHHHhccCC
Q psy7365 74 LEEQPLGPSGITLGLHTLGLEFVSRSMLMGM 104 (601)
Q Consensus 74 ~~~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl 104 (601)
+.+.-+|++|+ ||||+.++++.+.
T Consensus 4 ~~i~v~G~~~~-------GKssl~~~l~~~~ 27 (166)
T 2ce2_X 4 YKLVVVGAGGV-------GKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEEESTTS-------SHHHHHHHHHHSS
T ss_pred eEEEEECCCCC-------CHHHHHHHHHhCc
Confidence 45666999999 4555566665543
No 454
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=29.01 E-value=74 Score=35.67 Aligned_cols=44 Identities=14% Similarity=0.284 Sum_probs=33.6
Q ss_pred HhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHH
Q psy7365 445 LLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC 493 (601)
Q Consensus 445 L~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~ 493 (601)
-..+.-++++| |+.|+++..+ .+|+.+ .+.+.++|++.|.++..
T Consensus 96 ~~ad~~ilVvD-~~~g~~~qt~-~~~~~~---~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 96 EAADAALVAVS-AEAGVQVGTE-RAWTVA---ERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHCSEEEEEEE-TTTCSCHHHH-HHHHHH---HHTTCCEEEEEECGGGC
T ss_pred hhcCcEEEEEc-CCcccchhHH-HHHHHH---HHccCCEEEEecCCchh
Confidence 35788899999 9999999876 344433 34588899999998864
No 455
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=28.97 E-value=19 Score=32.53 Aligned_cols=12 Identities=42% Similarity=0.664 Sum_probs=9.1
Q ss_pred cccCCCCCCCcccc
Q psy7365 78 PLGPSGITLGLHTL 91 (601)
Q Consensus 78 ~~g~~g~~~g~~~~ 91 (601)
-+||+|+ ||||+
T Consensus 16 i~G~~Gs--GKst~ 27 (180)
T 3iij_A 16 LTGTPGV--GKTTL 27 (180)
T ss_dssp EECSTTS--SHHHH
T ss_pred EEeCCCC--CHHHH
Confidence 3899999 56655
No 456
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=28.77 E-value=25 Score=33.03 Aligned_cols=28 Identities=18% Similarity=0.124 Sum_probs=16.6
Q ss_pred eeecceEEeec-----ccCCCCCCCccccchhhhHHHhcc
Q psy7365 68 GISDTSLEEQP-----LGPSGITLGLHTLGLEFVSRSMLM 102 (601)
Q Consensus 68 ~~~~~~~~~~~-----~g~~g~~~g~~~~g~~~~~~~~l~ 102 (601)
.++..-+++.- +|+||+ ||| |++..++.
T Consensus 6 ~lHas~v~v~G~gvli~G~SGa--GKS-----tlal~L~~ 38 (181)
T 3tqf_A 6 TWHANFLVIDKMGVLITGEANI--GKS-----ELSLALID 38 (181)
T ss_dssp EEESEEEEETTEEEEEEESSSS--SHH-----HHHHHHHH
T ss_pred EEEEEEEEECCEEEEEEcCCCC--CHH-----HHHHHHHH
Confidence 34555555543 999999 455 45555543
No 457
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=28.52 E-value=21 Score=31.68 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=16.1
Q ss_pred eEEeecccCCCCCCCccccchhhhHHHhccC
Q psy7365 73 SLEEQPLGPSGITLGLHTLGLEFVSRSMLMG 103 (601)
Q Consensus 73 ~~~~~~~g~~g~~~g~~~~g~~~~~~~~l~G 103 (601)
.+.+.-+|++|+ ||||+.++++.|
T Consensus 18 ~~~i~v~G~~~~-------GKssli~~l~~~ 41 (183)
T 1moz_A 18 ELRILILGLDGA-------GKTTILYRLQIG 41 (183)
T ss_dssp CEEEEEEEETTS-------SHHHHHHHTCCS
T ss_pred ccEEEEECCCCC-------CHHHHHHHHhcC
Confidence 467777999999 445556655433
No 458
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=28.50 E-value=28 Score=33.36 Aligned_cols=29 Identities=14% Similarity=0.197 Sum_probs=18.5
Q ss_pred ceeecceEEeec-----ccCCCCCCCccccchhhhHHHhcc
Q psy7365 67 YGISDTSLEEQP-----LGPSGITLGLHTLGLEFVSRSMLM 102 (601)
Q Consensus 67 ~~~~~~~~~~~~-----~g~~g~~~g~~~~g~~~~~~~~l~ 102 (601)
..+...-+++.. +||||+ ||| |++..++.
T Consensus 23 ~~lHa~~v~~~g~~ilI~GpsGs--GKS-----tLA~~La~ 56 (205)
T 2qmh_A 23 RSMHGVLVDIYGLGVLITGDSGV--GKS-----ETALELVQ 56 (205)
T ss_dssp CCEESEEEEETTEEEEEECCCTT--TTH-----HHHHHHHT
T ss_pred eeeeEEEEEECCEEEEEECCCCC--CHH-----HHHHHHHH
Confidence 356666666644 999999 455 45665543
No 459
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=28.47 E-value=12 Score=37.67 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=13.5
Q ss_pred eecccCCCCCCCccccchhhhHHHhccCC
Q psy7365 76 EQPLGPSGITLGLHTLGLEFVSRSMLMGM 104 (601)
Q Consensus 76 ~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl 104 (601)
+.-+|++|+ ||| |+++ .|.|.
T Consensus 11 VaIvG~~nv--GKS-----TLln-~L~g~ 31 (301)
T 1ega_A 11 IAIVGRPNV--GKS-----TLLN-KLLGQ 31 (301)
T ss_dssp EEEECSSSS--SHH-----HHHH-HHHTC
T ss_pred EEEECCCCC--CHH-----HHHH-HHHCC
Confidence 344999999 455 4555 55665
No 460
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=28.34 E-value=29 Score=30.44 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=17.1
Q ss_pred eEEeecccCCCCCCCccccchhhhHHHhccCC
Q psy7365 73 SLEEQPLGPSGITLGLHTLGLEFVSRSMLMGM 104 (601)
Q Consensus 73 ~~~~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl 104 (601)
.+.+.-+|++|+ ||||+.++++.+-
T Consensus 7 ~~~i~v~G~~~~-------GKSsli~~l~~~~ 31 (177)
T 1wms_A 7 LFKVILLGDGGV-------GKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEEECCTTS-------SHHHHHHHHHHSC
T ss_pred eeEEEEECCCCC-------CHHHHHHHHHcCC
Confidence 466777999999 4555566666543
No 461
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=27.67 E-value=11 Score=39.31 Aligned_cols=14 Identities=29% Similarity=0.475 Sum_probs=10.1
Q ss_pred ecccCCCCCCCccccc
Q psy7365 77 QPLGPSGITLGLHTLG 92 (601)
Q Consensus 77 ~~~g~~g~~~g~~~~g 92 (601)
.-+||+|+ ||||+|
T Consensus 28 ~l~G~~G~--GKTTl~ 41 (359)
T 2ga8_A 28 ILVGSPGS--GKSTIA 41 (359)
T ss_dssp EEECCTTS--SHHHHH
T ss_pred EEECCCCC--cHHHHH
Confidence 34999999 566653
No 462
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=27.34 E-value=35 Score=29.98 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=19.0
Q ss_pred cceEEeecccCCCCCCCccccchhhhHHHhccCCC
Q psy7365 71 DTSLEEQPLGPSGITLGLHTLGLEFVSRSMLMGML 105 (601)
Q Consensus 71 ~~~~~~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl~ 105 (601)
+-.+.+.-+|++|+ ||||+.++++.+-.
T Consensus 8 ~~~~~i~v~G~~~~-------GKssli~~l~~~~~ 35 (180)
T 2g6b_A 8 DVAFKVMLVGDSGV-------GKTCLLVRFKDGAF 35 (180)
T ss_dssp SEEEEEEEECSTTS-------SHHHHHHHHHHSCC
T ss_pred CcceEEEEECcCCC-------CHHHHHHHHHhCCC
Confidence 45677777999999 45555666655543
No 463
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=27.33 E-value=66 Score=30.39 Aligned_cols=52 Identities=12% Similarity=0.137 Sum_probs=31.1
Q ss_pred hCCCCEEEEECCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEE-ccChhHHHhhC
Q psy7365 446 LGNTPLIFLDEPTS-GMDPGARRFLWTCIERAVSEGRCVILT-SHNMEECEALC 497 (601)
Q Consensus 446 ~~~P~lLlLDEPTs-GLD~~~~~~i~~lL~~l~~~G~tVlls-THdl~e~~~l~ 497 (601)
+.+-+++++||.-. ++|........+.+.....+-.++++| |.+.+...++.
T Consensus 174 l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~ 227 (235)
T 3llm_A 174 IRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYF 227 (235)
T ss_dssp CTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHT
T ss_pred hcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHc
Confidence 56789999999965 677766544444443332333455555 55655554443
No 464
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=27.27 E-value=31 Score=30.23 Aligned_cols=24 Identities=17% Similarity=0.165 Sum_probs=16.0
Q ss_pred eEEeecccCCCCCCCccccchhhhHHHhccC
Q psy7365 73 SLEEQPLGPSGITLGLHTLGLEFVSRSMLMG 103 (601)
Q Consensus 73 ~~~~~~~g~~g~~~g~~~~g~~~~~~~~l~G 103 (601)
.+.|.-+|++|+ ||||+.++++.+
T Consensus 9 ~~~i~v~G~~~~-------GKssl~~~l~~~ 32 (181)
T 3tw8_B 9 LFKLLIIGDSGV-------GKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEECCTTS-------CHHHHHHHHCSC
T ss_pred ceEEEEECCCCC-------CHHHHHHHHhcC
Confidence 456666999999 455556655544
No 465
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=27.22 E-value=15 Score=40.18 Aligned_cols=18 Identities=6% Similarity=-0.038 Sum_probs=12.9
Q ss_pred EEeecccCCCCCCCccccch
Q psy7365 74 LEEQPLGPSGITLGLHTLGL 93 (601)
Q Consensus 74 ~~~~~~g~~g~~~g~~~~g~ 93 (601)
+.+...|+||| ||||+|+
T Consensus 396 ~~I~l~GlsGs--GKSTIa~ 413 (511)
T 1g8f_A 396 FSIVLGNSLTV--SREQLSI 413 (511)
T ss_dssp EEEEECTTCCS--CHHHHHH
T ss_pred eEEEecccCCC--CHHHHHH
Confidence 45666999999 5666543
No 466
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=27.08 E-value=21 Score=33.08 Aligned_cols=12 Identities=33% Similarity=0.310 Sum_probs=8.4
Q ss_pred cccCCCCCCCcccc
Q psy7365 78 PLGPSGITLGLHTL 91 (601)
Q Consensus 78 ~~g~~g~~~g~~~~ 91 (601)
-.|+||+ |||||
T Consensus 9 i~G~sGs--GKTTl 20 (169)
T 1xjc_A 9 VVGYKHS--GKTTL 20 (169)
T ss_dssp EECCTTS--SHHHH
T ss_pred EECCCCC--CHHHH
Confidence 3799999 45543
No 467
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=27.05 E-value=32 Score=35.19 Aligned_cols=59 Identities=10% Similarity=-0.018 Sum_probs=41.8
Q ss_pred CcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEcc
Q psy7365 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEG-RCVILTSH 488 (601)
Q Consensus 429 ~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G-~tVllsTH 488 (601)
.+.++.++++..+++..+.+|+++||.-..+..|... ...+.+++++...| .+|++.|.
T Consensus 153 ~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 153 GQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp TCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred CCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 3467888999999999999999888884334445443 45566677765555 57777765
No 468
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=26.91 E-value=8.4 Score=35.60 Aligned_cols=46 Identities=13% Similarity=0.313 Sum_probs=22.7
Q ss_pred CcEEEEecCCC-CCCHHHHHHHH-HHHHHHhhhccccCCcEEEEEec-chhHHH
Q psy7365 278 ASTVILDEPTS-GVDPYSRRSIW-ELLIKVYYASHSLSGRTVILTTH-YMDEAD 328 (601)
Q Consensus 278 ~~~liLDEPts-gLD~~~~~~l~-~~l~~l~~~~~~~~G~TVI~~tH-dl~~~~ 328 (601)
+++|++||+-. .+++..+..++ .++.... ..+..+|++|+ ..+.+.
T Consensus 116 ~~~lilDei~~~~~~~~~~~~ll~~~l~~~~-----~~~~~~i~tsn~~~~~l~ 164 (202)
T 2w58_A 116 VPVLMLDDLGAEAMSSWVRDDVFGPILQYRM-----FENLPTFFTSNFDMQQLA 164 (202)
T ss_dssp SSEEEEEEECCC---CCGGGTTHHHHHHHHH-----HTTCCEEEEESSCHHHHH
T ss_pred CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHH-----hCCCCEEEEcCCCHHHHH
Confidence 37999999932 23433344343 4554331 13445555555 455444
No 469
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=26.70 E-value=17 Score=36.03 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=15.5
Q ss_pred EEeecccCCCCCCCccccchhhhHHHhccCC
Q psy7365 74 LEEQPLGPSGITLGLHTLGLEFVSRSMLMGM 104 (601)
Q Consensus 74 ~~~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl 104 (601)
+.+.-+|++|+ |||| +. +.++|.
T Consensus 4 ~kI~lvG~~nv--GKST-----L~-n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNS--GKTS-----LF-NLITGH 26 (272)
T ss_dssp EEEEEECCTTS--SHHH-----HH-HHHHCC
T ss_pred eEEEEECCCCC--CHHH-----HH-HHHHCC
Confidence 45666999999 4554 45 466665
No 470
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=26.70 E-value=35 Score=30.22 Aligned_cols=26 Identities=12% Similarity=0.284 Sum_probs=17.8
Q ss_pred ceEEeecccCCCCCCCccccchhhhHHHhccCC
Q psy7365 72 TSLEEQPLGPSGITLGLHTLGLEFVSRSMLMGM 104 (601)
Q Consensus 72 ~~~~~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl 104 (601)
-.+.|.-+|++|+ ||||+.++++.+.
T Consensus 17 ~~~ki~v~G~~~~-------GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 17 PTYKLVVVGDGGV-------GKSALTIQFFQKI 42 (183)
T ss_dssp CEEEEEEECSTTS-------SHHHHHHHHHHSC
T ss_pred CceEEEEECCCCC-------CHHHHHHHHHhCC
Confidence 3567777999999 4555566666543
No 471
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=26.58 E-value=33 Score=29.98 Aligned_cols=24 Identities=13% Similarity=0.183 Sum_probs=16.6
Q ss_pred EEeecccCCCCCCCccccchhhhHHHhccCC
Q psy7365 74 LEEQPLGPSGITLGLHTLGLEFVSRSMLMGM 104 (601)
Q Consensus 74 ~~~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl 104 (601)
+.+.-+|++|+ ||||+.++++.+-
T Consensus 15 ~~i~v~G~~~~-------GKssli~~l~~~~ 38 (179)
T 2y8e_A 15 FKLVFLGEQSV-------GKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEEESTTS-------SHHHHHHHHHHSC
T ss_pred eEEEEECCCCC-------CHHHHHHHHHcCC
Confidence 56777999999 4555566666443
No 472
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=26.57 E-value=27 Score=30.73 Aligned_cols=24 Identities=13% Similarity=0.264 Sum_probs=16.5
Q ss_pred eEEeecccCCCCCCCccccchhhhHHHhccC
Q psy7365 73 SLEEQPLGPSGITLGLHTLGLEFVSRSMLMG 103 (601)
Q Consensus 73 ~~~~~~~g~~g~~~g~~~~g~~~~~~~~l~G 103 (601)
.+.+.-+|++|+ ||||+.++++.+
T Consensus 9 ~~~i~v~G~~~~-------GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGV-------GKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTS-------SHHHHHHHHHHS
T ss_pred ceEEEEECCCCC-------CHHHHHHHHHhC
Confidence 456677999999 455556666655
No 473
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=26.41 E-value=22 Score=33.06 Aligned_cols=14 Identities=29% Similarity=0.259 Sum_probs=9.4
Q ss_pred eecccCCCCCCCcccc
Q psy7365 76 EQPLGPSGITLGLHTL 91 (601)
Q Consensus 76 ~~~~g~~g~~~g~~~~ 91 (601)
+.-+||+|+ ||||+
T Consensus 3 I~l~G~~Gs--GKsT~ 16 (216)
T 3fb4_A 3 IVLMGLPGA--GKGTQ 16 (216)
T ss_dssp EEEECSTTS--SHHHH
T ss_pred EEEECCCCC--CHHHH
Confidence 344799999 45544
No 474
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=26.36 E-value=34 Score=30.63 Aligned_cols=24 Identities=13% Similarity=0.295 Sum_probs=16.7
Q ss_pred EEeecccCCCCCCCccccchhhhHHHhccCC
Q psy7365 74 LEEQPLGPSGITLGLHTLGLEFVSRSMLMGM 104 (601)
Q Consensus 74 ~~~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl 104 (601)
+.|.-+|++|+ ||||+.++++.+.
T Consensus 22 ~ki~vvG~~~~-------GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGV-------GKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTS-------SHHHHHHHHHHSS
T ss_pred eEEEEECcCCC-------CHHHHHHHHHcCC
Confidence 56777999999 4555577666553
No 475
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=26.30 E-value=35 Score=30.23 Aligned_cols=25 Identities=12% Similarity=0.287 Sum_probs=16.7
Q ss_pred eEEeecccCCCCCCCccccchhhhHHHhccCC
Q psy7365 73 SLEEQPLGPSGITLGLHTLGLEFVSRSMLMGM 104 (601)
Q Consensus 73 ~~~~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl 104 (601)
.+.+.-+|++|+ ||||+.++++.+-
T Consensus 4 ~~ki~v~G~~~~-------GKSsli~~l~~~~ 28 (189)
T 4dsu_A 4 EYKLVVVGADGV-------GKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEEECCTTS-------SHHHHHHHHHHSS
T ss_pred EEEEEEECCCCC-------CHHHHHHHHHhCC
Confidence 456777999999 4555566665443
No 476
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=26.24 E-value=36 Score=30.05 Aligned_cols=25 Identities=12% Similarity=0.151 Sum_probs=16.3
Q ss_pred eEEeecccCCCCCCCccccchhhhHHHhccCC
Q psy7365 73 SLEEQPLGPSGITLGLHTLGLEFVSRSMLMGM 104 (601)
Q Consensus 73 ~~~~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl 104 (601)
.+.+.-+|++|+ ||||+.+++..+-
T Consensus 5 ~~~i~~~G~~~~-------GKssl~~~l~~~~ 29 (186)
T 1mh1_A 5 AIKCVVVGDGAV-------GKTCLLISYTTNA 29 (186)
T ss_dssp EEEEEEECSTTS-------SHHHHHHHHHHSS
T ss_pred EEEEEEECCCCC-------CHHHHHHHHHcCC
Confidence 356667999999 4445566665444
No 477
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=26.02 E-value=38 Score=30.46 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=17.8
Q ss_pred ceEEeecccCCCCCCCccccchhhhHHHhccCC
Q psy7365 72 TSLEEQPLGPSGITLGLHTLGLEFVSRSMLMGM 104 (601)
Q Consensus 72 ~~~~~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl 104 (601)
-.+.|.-+|++|+ ||||+.++++.+-
T Consensus 24 ~~~ki~v~G~~~~-------GKSsLi~~l~~~~ 49 (193)
T 2oil_A 24 FVFKVVLIGESGV-------GKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEEEESSTTS-------SHHHHHHHHHHSC
T ss_pred cceEEEEECcCCC-------CHHHHHHHHhcCC
Confidence 3567777999999 4555566665544
No 478
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=25.97 E-value=1.5e+02 Score=31.04 Aligned_cols=54 Identities=19% Similarity=0.234 Sum_probs=39.3
Q ss_pred CcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEc
Q psy7365 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVS-EGRCVILTS 487 (601)
Q Consensus 429 ~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~-~G~tVllsT 487 (601)
+.||..+.+|+.-|...+.+.++++.|+|. +++ .++...++++.+ .|..+|++-
T Consensus 263 g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~--~s~---~~l~~~~~~l~~~~~~~lIvID 317 (444)
T 2q6t_A 263 GQLTDRDFSRLVDVASRLSEAPIYIDDTPD--LTL---MEVRARARRLVSQNQVGLIIID 317 (444)
T ss_dssp GGCCHHHHHHHHHHHHHHHTSCEEEECCTT--CBH---HHHHHHHHHHHHHSCCCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhcCCEEEECCCC--CCH---HHHHHHHHHHHHHcCCCEEEEc
Confidence 579999999999988888888899988774 333 345555666543 477777774
No 479
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=25.87 E-value=38 Score=30.03 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=17.6
Q ss_pred eEEeecccCCCCCCCccccchhhhHHHhccCCC
Q psy7365 73 SLEEQPLGPSGITLGLHTLGLEFVSRSMLMGML 105 (601)
Q Consensus 73 ~~~~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl~ 105 (601)
.+.|.-+|++|+ ||||+.++++.+-.
T Consensus 11 ~~ki~v~G~~~~-------GKSsli~~l~~~~~ 36 (195)
T 3bc1_A 11 LIKFLALGDSGV-------GKTSVLYQYTDGKF 36 (195)
T ss_dssp EEEEEEECSTTS-------SHHHHHHHHHHSCC
T ss_pred eEEEEEECCCCC-------CHHHHHHHHhcCCC
Confidence 466777999999 45555666665543
No 480
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=25.76 E-value=29 Score=30.25 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=16.8
Q ss_pred eEEeecccCCCCCCCccccchhhhHHHhccCC
Q psy7365 73 SLEEQPLGPSGITLGLHTLGLEFVSRSMLMGM 104 (601)
Q Consensus 73 ~~~~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl 104 (601)
.+.+.-+|++|+ ||||+.+++..+-
T Consensus 7 ~~~i~v~G~~~~-------GKssl~~~l~~~~ 31 (171)
T 1upt_A 7 EMRILILGLDGA-------GKTTILYRLQVGE 31 (171)
T ss_dssp CEEEEEECSTTS-------SHHHHHHHHHHSS
T ss_pred ccEEEEECCCCC-------CHHHHHHHHhcCC
Confidence 356667999999 4555566665554
No 481
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=25.72 E-value=2.3e+02 Score=22.54 Aligned_cols=41 Identities=29% Similarity=0.285 Sum_probs=35.8
Q ss_pred CCEEEEE-CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccC
Q psy7365 449 TPLIFLD-EPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 489 (601)
Q Consensus 449 P~lLlLD-EPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHd 489 (601)
++.+++| .-...+|......+..+.+++.++|..+.++.-.
T Consensus 44 ~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~ 85 (110)
T 1sbo_A 44 KKKIVLDLSSVSYMDSAGLGTLVVILKDAKINGKEFILSSLK 85 (110)
T ss_dssp CSEEEEECTTCCCBCHHHHHHHHHHHHHHHHTTCEEEEESCC
T ss_pred CcEEEEECCCCcEEccHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 3788999 8999999999999999999998889888887543
No 482
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=25.72 E-value=23 Score=32.41 Aligned_cols=14 Identities=21% Similarity=-0.088 Sum_probs=9.8
Q ss_pred eecccCCCCCCCcccc
Q psy7365 76 EQPLGPSGITLGLHTL 91 (601)
Q Consensus 76 ~~~~g~~g~~~g~~~~ 91 (601)
|.-.||+|| ||||+
T Consensus 7 I~l~G~~Gs--GKsT~ 20 (204)
T 2v54_A 7 IVFEGLDKS--GKTTQ 20 (204)
T ss_dssp EEEECCTTS--SHHHH
T ss_pred EEEEcCCCC--CHHHH
Confidence 445899999 45554
No 483
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Probab=25.53 E-value=92 Score=26.27 Aligned_cols=42 Identities=12% Similarity=0.215 Sum_probs=37.5
Q ss_pred CCCCEEEEE-CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccC
Q psy7365 447 GNTPLIFLD-EPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 489 (601)
Q Consensus 447 ~~P~lLlLD-EPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHd 489 (601)
.+|+.++|| ...+.+|..+...+.++.+++.+ |..++++.-.
T Consensus 44 ~~~~~vilDl~~v~~iDssgl~~L~~~~~~~~~-g~~l~l~~~~ 86 (118)
T 3ny7_A 44 EGKRIVILKWDAVPVLDAGGLDAFQRFVKRLPE-GCELRVCNVE 86 (118)
T ss_dssp TTCSEEEEEEEECCCBCHHHHHHHHHHHHHCCT-TCEEEEECCC
T ss_pred CCCcEEEEEcCCCCeecHHHHHHHHHHHHHHHC-CCEEEEecCC
Confidence 468999999 89999999999999999999988 9999888654
No 484
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=25.27 E-value=39 Score=29.78 Aligned_cols=25 Identities=12% Similarity=0.214 Sum_probs=16.9
Q ss_pred eEEeecccCCCCCCCccccchhhhHHHhccCC
Q psy7365 73 SLEEQPLGPSGITLGLHTLGLEFVSRSMLMGM 104 (601)
Q Consensus 73 ~~~~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl 104 (601)
.+.|.-+|++|+ ||||+.++++.+-
T Consensus 18 ~~ki~v~G~~~~-------GKSsli~~l~~~~ 42 (187)
T 2a9k_A 18 LHKVIMVGSGGV-------GKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEEECSTTS-------SHHHHHHHHHHSC
T ss_pred ceEEEEECCCCC-------CHHHHHHHHhhCC
Confidence 466777999999 4555566665443
No 485
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=25.20 E-value=33 Score=30.49 Aligned_cols=23 Identities=13% Similarity=-0.031 Sum_probs=14.8
Q ss_pred EeecccCCCCCCCccccchhhhHHHhccCC
Q psy7365 75 EEQPLGPSGITLGLHTLGLEFVSRSMLMGM 104 (601)
Q Consensus 75 ~~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl 104 (601)
.+.-+|++|+ ||||+.++++.+.
T Consensus 3 ki~v~G~~~~-------GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNV-------GKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTS-------SHHHHHHHHHSCC
T ss_pred EEEEECCCCC-------CHHHHHHHHhCcC
Confidence 3455899999 5555676665543
No 486
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=25.11 E-value=28 Score=30.17 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=14.4
Q ss_pred EEeecccCCCCCCCccccchhhhHHHhccCC
Q psy7365 74 LEEQPLGPSGITLGLHTLGLEFVSRSMLMGM 104 (601)
Q Consensus 74 ~~~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl 104 (601)
+.+.-+|++|+ ||| |+.+++ .|.
T Consensus 3 ~ki~~vG~~~~--GKS-----sli~~l-~~~ 25 (166)
T 3q72_A 3 YKVLLLGAPGV--GKS-----ALARIF-GGV 25 (166)
T ss_dssp CEEEEEESTTS--SHH-----HHHHHH-CCC
T ss_pred EEEEEECCCCC--CHH-----HHHHHH-cCc
Confidence 45566899999 454 556544 443
No 487
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=25.01 E-value=29 Score=31.62 Aligned_cols=19 Identities=32% Similarity=0.450 Sum_probs=14.6
Q ss_pred cceEEeecccCCCCCCCcccc
Q psy7365 71 DTSLEEQPLGPSGITLGLHTL 91 (601)
Q Consensus 71 ~~~~~~~~~g~~g~~~g~~~~ 91 (601)
+-.+.|.-+|++|+ |||||
T Consensus 31 ~~~~ki~vvG~~~~--GKSsl 49 (199)
T 3l0i_B 31 DYLFKLLLIGDSGV--GKSCL 49 (199)
T ss_dssp SEEEEEEEECCTTS--CCTTT
T ss_pred CcceEEEEECCCCC--CHHHH
Confidence 44577788999999 67765
No 488
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=24.99 E-value=36 Score=30.09 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=16.8
Q ss_pred eEEeecccCCCCCCCccccchhhhHHHhccCC
Q psy7365 73 SLEEQPLGPSGITLGLHTLGLEFVSRSMLMGM 104 (601)
Q Consensus 73 ~~~~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl 104 (601)
.+.+.-+|++|+ ||||+.++++.|-
T Consensus 6 ~~ki~~~G~~~~-------GKSsli~~l~~~~ 30 (181)
T 3t5g_A 6 SRKIAILGYRSV-------GKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEEEEESTTS-------SHHHHHHHHHHSS
T ss_pred eEEEEEECcCCC-------CHHHHHHHHHcCC
Confidence 455666999999 4555567666444
No 489
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=24.97 E-value=39 Score=30.29 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=18.0
Q ss_pred eEEeecccCCCCCCCccccchhhhHHHhccCCC
Q psy7365 73 SLEEQPLGPSGITLGLHTLGLEFVSRSMLMGML 105 (601)
Q Consensus 73 ~~~~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl~ 105 (601)
.+.|.-+|++|+ ||||+.++++.+-.
T Consensus 20 ~~ki~v~G~~~~-------GKSsli~~l~~~~~ 45 (189)
T 1z06_A 20 IFKIIVIGDSNV-------GKTCLTYRFCAGRF 45 (189)
T ss_dssp EEEEEEECCTTS-------SHHHHHHHHHHSSC
T ss_pred eEEEEEECCCCC-------CHHHHHHHHHcCCC
Confidence 466777999999 45555776665543
No 490
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=24.85 E-value=23 Score=32.15 Aligned_cols=14 Identities=29% Similarity=0.214 Sum_probs=9.6
Q ss_pred eecccCCCCCCCcccc
Q psy7365 76 EQPLGPSGITLGLHTL 91 (601)
Q Consensus 76 ~~~~g~~g~~~g~~~~ 91 (601)
+.-.||+|| ||||+
T Consensus 12 I~l~G~~Gs--GKsT~ 25 (196)
T 2c95_A 12 IFVVGGPGS--GKGTQ 25 (196)
T ss_dssp EEEEECTTS--SHHHH
T ss_pred EEEECCCCC--CHHHH
Confidence 344899999 45554
No 491
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=24.80 E-value=37 Score=30.11 Aligned_cols=26 Identities=12% Similarity=0.149 Sum_probs=17.8
Q ss_pred ceEEeecccCCCCCCCccccchhhhHHHhccCC
Q psy7365 72 TSLEEQPLGPSGITLGLHTLGLEFVSRSMLMGM 104 (601)
Q Consensus 72 ~~~~~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl 104 (601)
-.+.+.-+|++|+ ||||+.++++.+-
T Consensus 9 ~~~ki~v~G~~~~-------GKSsli~~l~~~~ 34 (186)
T 2bme_A 9 FLFKFLVIGNAGT-------GKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEEEESTTS-------SHHHHHHHHHHSS
T ss_pred cceEEEEECCCCC-------CHHHHHHHHHcCC
Confidence 3467777999999 4555566666554
No 492
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=24.78 E-value=30 Score=31.09 Aligned_cols=25 Identities=12% Similarity=0.020 Sum_probs=16.3
Q ss_pred eEEeecccCCCCCCCccccchhhhHHHhccCC
Q psy7365 73 SLEEQPLGPSGITLGLHTLGLEFVSRSMLMGM 104 (601)
Q Consensus 73 ~~~~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl 104 (601)
.+.+.-+|++|+ ||||+.+++..+.
T Consensus 48 ~~~i~vvG~~g~-------GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNS-------GKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTS-------SHHHHHHHHHHSS
T ss_pred CCEEEEECCCCC-------CHHHHHHHHhcCC
Confidence 456666999999 4555566555443
No 493
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=24.78 E-value=32 Score=30.19 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=16.8
Q ss_pred eEEeecccCCCCCCCccccchhhhHHHhccCC
Q psy7365 73 SLEEQPLGPSGITLGLHTLGLEFVSRSMLMGM 104 (601)
Q Consensus 73 ~~~~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl 104 (601)
.+.+.-+|++|+ ||||+.+++..+-
T Consensus 6 ~~ki~v~G~~~~-------GKssl~~~l~~~~ 30 (178)
T 2hxs_A 6 QLKIVVLGDGAS-------GKTSLTTCFAQET 30 (178)
T ss_dssp EEEEEEECCTTS-------SHHHHHHHHHGGG
T ss_pred eEEEEEECcCCC-------CHHHHHHHHHhCc
Confidence 466777999999 4555566665443
No 494
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=24.74 E-value=38 Score=30.25 Aligned_cols=26 Identities=12% Similarity=0.018 Sum_probs=17.9
Q ss_pred ceEEeecccCCCCCCCccccchhhhHHHhccCC
Q psy7365 72 TSLEEQPLGPSGITLGLHTLGLEFVSRSMLMGM 104 (601)
Q Consensus 72 ~~~~~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl 104 (601)
..+.+.-+|++|+ ||||+.++++.+-
T Consensus 6 ~~~ki~v~G~~~v-------GKSsli~~l~~~~ 31 (184)
T 1m7b_A 6 VKCKIVVVGDSQC-------GKTALLHVFAKDC 31 (184)
T ss_dssp CEEEEEEEESTTS-------SHHHHHHHHHHSC
T ss_pred eEEEEEEECCCCC-------CHHHHHHHHhcCC
Confidence 4566777999999 4555577666554
No 495
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=24.72 E-value=25 Score=32.76 Aligned_cols=14 Identities=29% Similarity=0.257 Sum_probs=9.3
Q ss_pred eecccCCCCCCCcccc
Q psy7365 76 EQPLGPSGITLGLHTL 91 (601)
Q Consensus 76 ~~~~g~~g~~~g~~~~ 91 (601)
+.-+||+|+ ||||+
T Consensus 3 I~l~G~~Gs--GKsT~ 16 (216)
T 3dl0_A 3 LVLMGLPGA--GKGTQ 16 (216)
T ss_dssp EEEECSTTS--SHHHH
T ss_pred EEEECCCCC--CHHHH
Confidence 344799999 45544
No 496
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=24.69 E-value=1.1e+02 Score=31.06 Aligned_cols=52 Identities=19% Similarity=0.208 Sum_probs=28.6
Q ss_pred HHHHHHhCCCCEEEEECC-------CCCCCHHHHHHHHHHHHHHHh------CCcEEEEEccChh
Q psy7365 440 STAIALLGNTPLIFLDEP-------TSGMDPGARRFLWTCIERAVS------EGRCVILTSHNME 491 (601)
Q Consensus 440 ~lA~AL~~~P~lLlLDEP-------TsGLD~~~~~~i~~lL~~l~~------~G~tVllsTHdl~ 491 (601)
.+..+-...|.+|++||. ..+.+....+.+..++..+.. .+..||.+|+..+
T Consensus 168 ~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~ 232 (357)
T 3d8b_A 168 LFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQ 232 (357)
T ss_dssp HHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGG
T ss_pred HHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChh
Confidence 344555678999999997 344444444444455554431 2345666787654
No 497
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=24.65 E-value=25 Score=31.18 Aligned_cols=13 Identities=31% Similarity=0.575 Sum_probs=9.1
Q ss_pred ecccCCCCCCCcccc
Q psy7365 77 QPLGPSGITLGLHTL 91 (601)
Q Consensus 77 ~~~g~~g~~~g~~~~ 91 (601)
.-.|++|+ ||||+
T Consensus 6 ~l~G~~Gs--GKsT~ 18 (173)
T 1e6c_A 6 FMVGARGC--GMTTV 18 (173)
T ss_dssp EEESCTTS--SHHHH
T ss_pred EEECCCCC--CHHHH
Confidence 34899999 55554
No 498
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=24.60 E-value=38 Score=29.70 Aligned_cols=24 Identities=8% Similarity=-0.036 Sum_probs=15.6
Q ss_pred EEeecccCCCCCCCccccchhhhHHHhccCC
Q psy7365 74 LEEQPLGPSGITLGLHTLGLEFVSRSMLMGM 104 (601)
Q Consensus 74 ~~~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl 104 (601)
+.|.-+|++|+ ||||+.++++.+-
T Consensus 9 ~~i~v~G~~~~-------GKssl~~~l~~~~ 32 (178)
T 2lkc_A 9 PVVTIMGHVDH-------GKTTLLDAIRHSK 32 (178)
T ss_dssp CEEEEESCTTT-------THHHHHHHHHTTC
T ss_pred CEEEEECCCCC-------CHHHHHHHHhCCc
Confidence 44556999999 4555566665443
No 499
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=24.50 E-value=57 Score=29.99 Aligned_cols=53 Identities=17% Similarity=0.249 Sum_probs=36.9
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChh----------HHHhhCCEEEEEe
Q psy7365 447 GNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME----------ECEALCTKLTIMV 504 (601)
Q Consensus 447 ~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~----------e~~~l~drv~iL~ 504 (601)
.+++++++||--. +++ .+.+.++.+.++|..|+++.++.+ ....+||.|.-|+
T Consensus 75 ~~~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 75 EDTRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TTEEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 3678999999532 443 355667777777999999988655 2344688886654
No 500
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=24.47 E-value=45 Score=30.18 Aligned_cols=25 Identities=12% Similarity=-0.003 Sum_probs=17.4
Q ss_pred eEEeecccCCCCCCCccccchhhhHHHhccCC
Q psy7365 73 SLEEQPLGPSGITLGLHTLGLEFVSRSMLMGM 104 (601)
Q Consensus 73 ~~~~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl 104 (601)
.+.|.-+|++|+ ||||+.++++.+-
T Consensus 8 ~~ki~v~G~~~~-------GKSsli~~l~~~~ 32 (203)
T 1zbd_A 8 MFKILIIGNSSV-------GKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEEECSTTS-------SHHHHHHHHHTCC
T ss_pred eeEEEEECCCCC-------CHHHHHHHHhcCC
Confidence 466777999999 4555566666554
Done!