RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7365
(601 letters)
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 221 bits (567), Expect = 7e-69
Identities = 80/162 (49%), Positives = 106/162 (65%), Gaps = 3/162 (1%)
Query: 357 RGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLN 416
GY + D K+A Q +GYCPQFDAL D LT REHL FY+R++ LP + V L
Sbjct: 62 NGYSIRTDRKAARQ--SLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLR 119
Query: 417 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERA 476
L +++ RTLSGG KRKLS AIAL+G ++ LDEPTSG+DP +RR +W I
Sbjct: 120 VLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILE- 178
Query: 477 VSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 518
V +GR +ILT+H+M+E EALC ++ IM +G+ C+GS LK
Sbjct: 179 VRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQELK 220
Score = 130 bits (329), Expect = 1e-34
Identities = 49/97 (50%), Positives = 65/97 (67%)
Query: 99 SMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV 158
ML G L +SGTA I + IRTD R+SLG CPQ++ALFD+LTV EH+ FY++LK +
Sbjct: 46 KMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGL 105
Query: 159 PKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKL 195
PK + E+ ++ LG+ K A TLSGGM+RKL
Sbjct: 106 PKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKL 142
Score = 114 bits (289), Expect = 4e-29
Identities = 43/83 (51%), Positives = 60/83 (72%), Gaps = 7/83 (8%)
Query: 271 FAMSFVPASTVI-LDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADL 329
A++ + +V+ LDEPTSG+DP SRR+IW+L+++V GR++ILTTH MDEA+
Sbjct: 144 LAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEV------RKGRSIILTTHSMDEAEA 197
Query: 330 LGDRIAIIAAGKLQCCGSSVFLK 352
L DRIAI++ GKL+C GS LK
Sbjct: 198 LCDRIAIMSDGKLRCIGSPQELK 220
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 227 bits (581), Expect = 8e-64
Identities = 113/232 (48%), Positives = 151/232 (65%), Gaps = 9/232 (3%)
Query: 374 IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSG 433
+GYCPQFDA++D LT REHL Y+R+R +P+ + + N S+ L Y+DR T SG
Sbjct: 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSG 2073
Query: 434 GNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC 493
GNKRKLSTAIAL+G PL+ LDEPT+GMDP ARR LW I + EGR V+LTSH+MEEC
Sbjct: 2074 GNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEEC 2133
Query: 494 EALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCAEGRS------ADAQTYLSLNL 547
EALCT+L IMV G F CLG+ HLKSK+G GY V ++ + + + N
Sbjct: 2134 EALCTRLAIMVKGAFQCLGTIQHLKSKFGDGYIVTMKIKSPKDDLLPDLNPVEQFFQGNF 2193
Query: 548 PVADLVETHATQLQYRISGAVSDLGALFRTLESAKTEAGLIVDYSLSQTSLE 599
P + E H LQ+++S S L +F+ L S K ++ LI +YS++QT+L+
Sbjct: 2194 PGSVQRERHYNMLQFQVSS--SSLARIFQLLISHK-DSLLIEEYSVTQTTLD 2242
Score = 128 bits (323), Expect = 9e-31
Identities = 70/139 (50%), Positives = 89/139 (64%), Gaps = 25/139 (17%)
Query: 272 AMSFV-PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLL 330
A++FV A V+LDEPTSGVDPYSRRSIW+LL+K SGRT+I++TH+MDEADLL
Sbjct: 1073 AIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR------SGRTIIMSTHHMDEADLL 1126
Query: 331 GDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSL--DMK-------------SAPQKSYIG 375
GDRIAII+ G+L C G+ +FLKN F G+YL+L MK S K +
Sbjct: 1127 GDRIAIISQGRLYCSGTPLFLKNCFGTGFYLTLVRKMKNIQSQRGGCEGTCSCTSKGFST 1186
Query: 376 YCPQFDALNDRLTPREHLE 394
CP A D +TP + L+
Sbjct: 1187 RCP---ARVDEITPEQVLD 1202
Score = 112 bits (280), Expect = 2e-25
Identities = 56/124 (45%), Positives = 76/124 (61%), Gaps = 12/124 (9%)
Query: 99 SMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV 158
S+L G+LP +SGT + DI T++ +R+SLG+CPQ+N LF LTV EH+ FY+QLK
Sbjct: 974 SILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGR 1033
Query: 159 PKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAAN 218
+ AQLE+ M+ D G+ HKR A LSGGMQRKL A++F+ A
Sbjct: 1034 SWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLS------------VAIAFVGDAK 1081
Query: 219 NVIL 222
V+L
Sbjct: 1082 VVVL 1085
Score = 110 bits (277), Expect = 4e-25
Identities = 55/152 (36%), Positives = 90/152 (59%), Gaps = 1/152 (0%)
Query: 374 IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSG 433
+G CPQ + L LT EH+ FY++++ + L L H + E + LSG
Sbjct: 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSG 1064
Query: 434 GNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC 493
G +RKLS AIA +G+ ++ LDEPTSG+DP +RR +W + + S GR +I+++H+M+E
Sbjct: 1065 GMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRS-GRTIIMSTHHMDEA 1123
Query: 494 EALCTKLTIMVNGQFTCLGSATHLKSKYGQGY 525
+ L ++ I+ G+ C G+ LK+ +G G+
Sbjct: 1124 DLLGDRIAIISQGRLYCSGTPLFLKNCFGTGF 1155
Score = 103 bits (259), Expect = 7e-23
Identities = 46/87 (52%), Positives = 62/87 (71%)
Query: 196 DNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALET 255
DN+KVWFNNK W A VSF+N A+N ILRASLP + ++Y I I+ P+NLT +Q++ T
Sbjct: 1613 DNIKVWFNNKGWHALVSFLNVAHNAILRASLPKDRDPEEYGITVISQPLNLTKEQLSEIT 1672
Query: 256 LKKAGTSILVAVTVLFAMSFVPASTVI 282
+ +VA+ V+FAMSFVPAS V+
Sbjct: 1673 VLTTSVDAVVAICVIFAMSFVPASFVL 1699
Score = 77.4 bits (190), Expect = 1e-14
Identities = 42/113 (37%), Positives = 63/113 (55%), Gaps = 16/113 (14%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
V+LDEPT+G+DP +RR +W ++ + GR V+LT+H M+E + L R+AI+ G
Sbjct: 2092 VLLDEPTTGMDPQARRMLWNTIVSIIR-----EGRAVVLTSHSMEECEALCTRLAIMVKG 2146
Query: 341 KLQCCGSSVFLKNSFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHL 393
QC G+ LK+ F GY +++ +KS P+ D L D L P E
Sbjct: 2147 AFQCLGTIQHLKSKFGDGYIVTMKIKS----------PKDDLLPD-LNPVEQF 2188
Score = 67.7 bits (165), Expect = 1e-11
Identities = 35/96 (36%), Positives = 57/96 (59%)
Query: 100 MLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP 159
ML G V+SG A + I T+++ + +++G CPQ++A+ D LT EH++ Y++L+ VP
Sbjct: 1984 MLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVP 2043
Query: 160 KDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKL 195
+ + + I LG+ LA T SGG +RKL
Sbjct: 2044 AEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKL 2079
Score = 51.2 bits (122), Expect = 2e-06
Identities = 25/65 (38%), Positives = 36/65 (55%)
Query: 12 DVTQLIRSFLPAANIHKISGSEVTYVLPQDPASMGAYVSLFESLSENRDKLGIDSYGISD 71
++ L+ +P A + + G E+ ++LP AY SLF L E LG+ S+GISD
Sbjct: 1207 ELMDLVYHHVPEAKLVECIGQELIFLLPNKNFKQRAYASLFRELEETLADLGLSSFGISD 1266
Query: 72 TSLEE 76
T LEE
Sbjct: 1267 TPLEE 1271
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 159 bits (405), Expect = 2e-44
Identities = 64/174 (36%), Positives = 102/174 (58%), Gaps = 3/174 (1%)
Query: 358 GYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNK 417
GY + + ++ IGY PQ +L LT RE+LEF++R+ L + E L
Sbjct: 66 GYDVVKEPAKVRRR--IGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLEL 123
Query: 418 FALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAV 477
F L ++++VRTLSGG K++LS A+ALL + L+ LDEPTSG+DP +RR +W +
Sbjct: 124 FGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELA 183
Query: 478 SEGRC-VILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVR 530
EG ++L++H +EE E LC ++ I+ +G+ G+ LK K+G +++
Sbjct: 184 KEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIELE 237
Score = 90.4 bits (225), Expect = 5e-20
Identities = 30/97 (30%), Positives = 56/97 (57%)
Query: 100 MLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP 159
+L G+L +SG + +D+ + +RR +G PQ +L+ +LTV E++ F+++L +
Sbjct: 50 ILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS 109
Query: 160 KDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLD 196
K+ A+ I ++ G+ K TLSGGM+++L
Sbjct: 110 KEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLS 146
Score = 88.1 bits (219), Expect = 3e-19
Identities = 37/84 (44%), Positives = 52/84 (61%), Gaps = 4/84 (4%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
+ILDEPTSG+DP SRR IWELL + A G T++L+TH ++EA+ L DR+ I+ G
Sbjct: 158 LILDEPTSGLDPESRREIWELLRE--LAKEG--GVTILLSTHILEEAEELCDRVIILNDG 213
Query: 341 KLQCCGSSVFLKNSFARGYYLSLD 364
K+ G+ LK F + L+
Sbjct: 214 KIIAEGTPEELKEKFGGKGVIELE 237
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 132 bits (333), Expect = 2e-34
Identities = 77/256 (30%), Positives = 117/256 (45%), Gaps = 3/256 (1%)
Query: 348 SVFLKNSFARGYYLSLDMKSAPQK--SYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSV 405
+ L+ + D+ P+K IG PQ+ ++++ LT RE+LE R+ LP
Sbjct: 40 TTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKD 99
Query: 406 LLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGA 465
E L F LG +DR V T SGG +R+L A +L+ ++FLDEPT+G+DP
Sbjct: 100 EAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRT 159
Query: 466 RRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGY 525
RR +W I EG ++LT+H MEE + LC ++ I+ +G+ G+ LK + G+
Sbjct: 160 RRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGKDT 219
Query: 526 SVKVRCAEGRSADAQTYLSLNLPVADLVETHATQLQYRISGAVSDLG-ALFRTLESAKTE 584
+ L L L T RI V D + +E+A
Sbjct: 220 LESRPRDIQSLKVEVSMLIAELGETGLGLLAVTVDSDRIKILVPDGDETVPEIVEAAIRN 279
Query: 585 AGLIVDYSLSQTSLED 600
I S + SL+D
Sbjct: 280 GIRIRSISTERPSLDD 295
Score = 79.7 bits (197), Expect = 2e-16
Identities = 38/82 (46%), Positives = 52/82 (63%), Gaps = 6/82 (7%)
Query: 272 AMSFVPASTVI-LDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLL 330
A S + V+ LDEPT+G+DP +RR+IW+ Y + G T++LTTHYM+EAD L
Sbjct: 136 AASLIHQPDVLFLDEPTTGLDPRTRRAIWD-----YIRALKEEGVTILLTTHYMEEADKL 190
Query: 331 GDRIAIIAAGKLQCCGSSVFLK 352
DRIAII G++ G+ LK
Sbjct: 191 CDRIAIIDHGRIIAEGTPEELK 212
Score = 77.4 bits (191), Expect = 1e-15
Identities = 31/98 (31%), Positives = 54/98 (55%)
Query: 99 SMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV 158
ML +L +SGTA++ +D+ + +RRS+G+ PQY ++ + LT E++ +L +
Sbjct: 37 RMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGL 96
Query: 159 PKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLD 196
PKD A+ ++ + T SGGM+R+LD
Sbjct: 97 PKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLD 134
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 123 bits (310), Expect = 4e-32
Identities = 53/146 (36%), Positives = 84/146 (57%), Gaps = 1/146 (0%)
Query: 374 IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSG 433
IG Q +++D LT E+L ++R+ +P ++E L+ L +DR V+T SG
Sbjct: 75 IGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSG 134
Query: 434 GNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEE 492
G +R+L A +L+ ++FLDEPT G+DP R +W IE+ E G ++LT+H MEE
Sbjct: 135 GMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEE 194
Query: 493 CEALCTKLTIMVNGQFTCLGSATHLK 518
E LC ++ I+ +G+ G+ LK
Sbjct: 195 AEQLCDRVAIIDHGRIIAEGTPEELK 220
Score = 80.5 bits (199), Expect = 3e-17
Identities = 36/82 (43%), Positives = 49/82 (59%), Gaps = 5/82 (6%)
Query: 272 AMSFVPASTVI-LDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLL 330
A S V V+ LDEPT G+DP +R +WE I+ G T++LTTHYM+EA+ L
Sbjct: 143 ARSLVHRPEVLFLDEPTIGLDPQTRAHVWEY-IEKLKEEF---GMTILLTTHYMEEAEQL 198
Query: 331 GDRIAIIAAGKLQCCGSSVFLK 352
DR+AII G++ G+ LK
Sbjct: 199 CDRVAIIDHGRIIAEGTPEELK 220
Score = 74.3 bits (183), Expect = 4e-15
Identities = 29/98 (29%), Positives = 54/98 (55%)
Query: 99 SMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV 158
ML +L +SG A + HD+ + +RR +G+ Q ++ D+LT E+++ +++L V
Sbjct: 44 KMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGV 103
Query: 159 PKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLD 196
P + I ++ +G+ L T SGGM+R+L+
Sbjct: 104 PGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLE 141
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 120 bits (303), Expect = 1e-31
Identities = 53/161 (32%), Positives = 77/161 (47%), Gaps = 38/161 (23%)
Query: 350 FLKNSFARGYYLSLDMKSAPQ--KSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLL 407
LK L D+K P+ K IGY P+ +L + LT RE+L+
Sbjct: 49 LLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK------------- 95
Query: 408 NTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARR 467
LSGG K++L+ A ALL + L+ LDEPTSG+DP +RR
Sbjct: 96 -----------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRR 132
Query: 468 FLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQF 508
W + EG+ ++L+SH +EE E LC ++ I+ NG+
Sbjct: 133 EFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
Score = 84.4 bits (210), Expect = 5e-19
Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 6/75 (8%)
Query: 269 VLFAMSFVP-ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEA 327
+ A + + +ILDEPTSG+DP SRR WELL + G+T++L++H ++EA
Sbjct: 104 LALAQALLHDPELLILDEPTSGLDPESRREFWELLRE--LKKE---GKTILLSSHILEEA 158
Query: 328 DLLGDRIAIIAAGKL 342
+ L DR+AI+ G++
Sbjct: 159 ERLCDRVAILNNGRI 173
Score = 57.8 bits (141), Expect = 9e-10
Identities = 15/52 (28%), Positives = 31/52 (59%)
Query: 100 MLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWF 151
+++G+L SG K+ DI+ + ++R +G P+ +L++ LTV E++
Sbjct: 45 IILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKL 96
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 109 bits (273), Expect = 3e-26
Identities = 62/180 (34%), Positives = 95/180 (52%), Gaps = 18/180 (10%)
Query: 329 LLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLT 388
LLG + AG + CG V + AR +G PQFD L+ T
Sbjct: 53 LLG--LTHPDAGSISLCGEPVPSRARHAR--------------QRVGVVPQFDNLDPDFT 96
Query: 389 PREHLEFYSRVRNLPSVLLNTIVNESLNKFA-LGHYSDREVRTLSGGNKRKLSTAIALLG 447
RE+L + R L + +V L +FA L + +D +V LSGG KR+L+ A AL+
Sbjct: 97 VRENLLVFGRYFGLSAAAARALV-PPLLEFAKLENKADAKVGELSGGMKRRLTLARALVN 155
Query: 448 NTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 507
+ ++ LDEPT+G+DP AR +W + ++ G+ ++LT+H MEE E LC +L ++ G+
Sbjct: 156 DPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGR 215
Score = 64.8 bits (158), Expect = 2e-11
Identities = 41/118 (34%), Positives = 56/118 (47%), Gaps = 35/118 (29%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
++LDEPT+G+DP +R +WE L S G+T++LTTH+M+EA+ L DR+ +I G
Sbjct: 160 LVLDEPTTGLDPQARHLMWERL-----RSLLARGKTILLTTHFMEEAERLCDRLCVIEEG 214
Query: 341 KLQCCGSSVFLKNSFARGYYLSLDMKSAPQK---SYIG------YCPQFDALNDRLTP 389
+ A G AP S IG Y P AL D L P
Sbjct: 215 R------------KIAEG---------APHALIESEIGCDVIEIYGPDPVALRDELAP 251
Score = 36.7 bits (85), Expect = 0.027
Identities = 22/96 (22%), Positives = 47/96 (48%)
Query: 100 MLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP 159
ML+G+ +G+ + + + R+ +GV PQ++ L TV E++ + + +
Sbjct: 52 MLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLS 111
Query: 160 KDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKL 195
A+ + ++ + +K + LSGGM+R+L
Sbjct: 112 AAAARALVPPLLEFAKLENKADAKVGELSGGMKRRL 147
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 102 bits (257), Expect = 6e-25
Identities = 51/149 (34%), Positives = 87/149 (58%), Gaps = 5/149 (3%)
Query: 364 DMKSAPQK--SYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALG 421
D+ PQK IGY PQ + T RE L++ + ++ +PS + V+E L LG
Sbjct: 62 DVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLG 121
Query: 422 HYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGAR-RFLWTCIERAVSEG 480
+ +++ +LSGG +R++ A AL+G+ ++ +DEPT+G+DP R RF E + E
Sbjct: 122 DRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSE--LGED 179
Query: 481 RCVILTSHNMEECEALCTKLTIMVNGQFT 509
R VIL++H +E+ E+LC ++ ++ G+
Sbjct: 180 RIVILSTHIVEDVESLCNQVAVLNKGKLV 208
Score = 61.1 bits (149), Expect = 1e-10
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 8/117 (6%)
Query: 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNA 138
LGP+G G TL +L + P SSGT +I D+ +RR +G PQ
Sbjct: 31 LGPNGA--GKTTL------MRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFG 82
Query: 139 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKL 195
++ TV E + + + LK +P + + ++ + + + +LSGGM+R++
Sbjct: 83 VYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRV 139
Score = 53.7 bits (130), Expect = 4e-08
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 6/66 (9%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
+I+DEPT+G+DP R LL ++ R VIL+TH +++ + L +++A++ G
Sbjct: 152 LIVDEPTAGLDPEERIRFRNLLSELG------EDRIVILSTHIVEDVESLCNQVAVLNKG 205
Query: 341 KLQCCG 346
KL G
Sbjct: 206 KLVFEG 211
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 103 bits (259), Expect = 3e-24
Identities = 53/137 (38%), Positives = 83/137 (60%), Gaps = 2/137 (1%)
Query: 371 KSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFA-LGHYSDREVR 429
++ IG PQFD L+ T RE+L + R + + + ++ SL +FA L +D V
Sbjct: 113 RARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVI-PSLLEFARLESKADARVS 171
Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 489
LSGG KR+L+ A AL+ + L+ LDEPT+G+DP AR +W + ++ G+ ++LT+H
Sbjct: 172 DLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHF 231
Query: 490 MEECEALCTKLTIMVNG 506
MEE E LC +L ++ G
Sbjct: 232 MEEAERLCDRLCVLEAG 248
Score = 66.0 bits (161), Expect = 1e-11
Identities = 30/63 (47%), Positives = 45/63 (71%), Gaps = 9/63 (14%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSL--SGRTVILTTHYMDEADLLGDRIAIIA 338
+ILDEPT+G+DP++R IWE L SL G+T++LTTH+M+EA+ L DR+ ++
Sbjct: 194 LILDEPTTGLDPHARHLIWERL-------RSLLARGKTILLTTHFMEEAERLCDRLCVLE 246
Query: 339 AGK 341
AG+
Sbjct: 247 AGR 249
Score = 42.1 bits (99), Expect = 6e-04
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNA 138
LGP+G G ++R M++GM +G + + R +GV PQ++
Sbjct: 73 LGPNGA-------GKSTIAR-MILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDN 124
Query: 139 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKL 195
L + TV E++ + + + + I +++ + K + + LSGGM+R+L
Sbjct: 125 LDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRL 181
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with NodJ
to export a nodulation signal molecule. This model does
not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 102 bits (255), Expect = 5e-24
Identities = 53/137 (38%), Positives = 83/137 (60%), Gaps = 2/137 (1%)
Query: 371 KSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFA-LGHYSDREVR 429
+ IG PQFD L+ T RE+L + R + + + ++ SL +FA L +D V
Sbjct: 76 RVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVI-PSLLEFARLESKADVRVA 134
Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 489
LSGG KR+L+ A AL+ + L+ LDEPT+G+DP AR +W + ++ G+ ++LT+H
Sbjct: 135 LLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHF 194
Query: 490 MEECEALCTKLTIMVNG 506
MEE E LC +L ++ +G
Sbjct: 195 MEEAERLCDRLCVLESG 211
Score = 65.0 bits (158), Expect = 2e-11
Identities = 28/61 (45%), Positives = 44/61 (72%), Gaps = 5/61 (8%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
+ILDEPT+G+DP++R IWE L S G+T++LTTH+M+EA+ L DR+ ++ +G
Sbjct: 157 LILDEPTTGLDPHARHLIWERL-----RSLLARGKTILLTTHFMEEAERLCDRLCVLESG 211
Query: 341 K 341
+
Sbjct: 212 R 212
Score = 44.1 bits (104), Expect = 1e-04
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 16/121 (13%)
Query: 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNA 138
LGP+G G ++R ML+GM+ G + + + R ++GV PQ++
Sbjct: 36 LGPNGA-------GKSTIAR-MLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDN 87
Query: 139 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANT----LSGGMQRK 194
L + TV E++ + + ++ EI +I L + S A+ LSGGM+R+
Sbjct: 88 LDPEFTVRENLLVFGRYFG----MSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRR 143
Query: 195 L 195
L
Sbjct: 144 L 144
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of a single ATP-binding
protein and a single integral membrane protein.
Length = 218
Score = 99.7 bits (249), Expect = 6e-24
Identities = 45/146 (30%), Positives = 80/146 (54%), Gaps = 2/146 (1%)
Query: 363 LDMKSAPQ--KSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFAL 420
D+ P + +G+ L DRLT RE+LE+++ + L L + E ++ +
Sbjct: 67 FDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGM 126
Query: 421 GHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEG 480
DR V S G ++K++ A AL+ + P++ LDEPT+G+D A R L I + + G
Sbjct: 127 EELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALG 186
Query: 481 RCVILTSHNMEECEALCTKLTIMVNG 506
+C++ ++H M+E E LC ++ ++ G
Sbjct: 187 KCILFSTHIMQEVERLCDRVVVLHRG 212
Score = 52.0 bits (125), Expect = 2e-07
Identities = 20/62 (32%), Positives = 38/62 (61%), Gaps = 5/62 (8%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
++LDEPT+G+D + R++ E I+ A G+ ++ +TH M E + L DR+ ++ G
Sbjct: 158 LLLDEPTTGLDVMATRALREF-IRQLRAL----GKCILFSTHIMQEVERLCDRVVVLHRG 212
Query: 341 KL 342
++
Sbjct: 213 RV 214
Score = 42.4 bits (100), Expect = 3e-04
Identities = 24/95 (25%), Positives = 42/95 (44%)
Query: 100 MLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP 159
ML G+L +G A + D+ + RR LG L+D+LT E++ +++ L +
Sbjct: 50 MLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLK 109
Query: 160 KDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRK 194
D + + LG+ S GM++K
Sbjct: 110 GDELTARLEELADRLGMEELLDRRVGGFSTGMRQK 144
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 97.2 bits (243), Expect = 5e-23
Identities = 36/121 (29%), Positives = 65/121 (53%)
Query: 387 LTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL 446
T E + F LP + V E+L L DR TLSGG K++++ A L
Sbjct: 91 PTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLA 150
Query: 447 GNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNG 506
+ ++ LDEPT+G+DP RR L +++ +EG+ +I+ +H+++ L ++ ++ +G
Sbjct: 151 MDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDG 210
Query: 507 Q 507
+
Sbjct: 211 K 211
Score = 63.3 bits (155), Expect = 2e-11
Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 5/61 (8%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
++LDEPT+G+DP RR + ELL K+ G+T+I+ TH +D L DR+ ++ G
Sbjct: 156 LLLDEPTAGLDPAGRRELLELLKKL-----KAEGKTIIIVTHDLDLLLELADRVIVLEDG 210
Query: 341 K 341
K
Sbjct: 211 K 211
Score = 36.7 bits (86), Expect = 0.020
Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 16/122 (13%)
Query: 79 LGPSGI---TLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIR-TDMTTIRRSLGVCP 134
+GP+G TL L G+L +SG + D+ + +RR +G+
Sbjct: 33 VGPNGSGKSTLLRL-----------LNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVF 81
Query: 135 QY-NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQR 193
Q + F TVEE + F + +P++ + + + +G+ R TLSGG ++
Sbjct: 82 QNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQ 141
Query: 194 KL 195
++
Sbjct: 142 RV 143
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 96.2 bits (240), Expect = 1e-22
Identities = 40/142 (28%), Positives = 73/142 (51%)
Query: 366 KSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSD 425
++ IGY P+ L ++ + L + ++++ L ++E L + L Y++
Sbjct: 64 LDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYAN 123
Query: 426 REVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL 485
+ V LS GN++K+ A++ + L+ LDEP SG+DP L I G+ VIL
Sbjct: 124 KRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVIL 183
Query: 486 TSHNMEECEALCTKLTIMVNGQ 507
++H ME E LC ++ ++ G+
Sbjct: 184 STHQMELVEELCDRVLLLNKGR 205
Score = 53.4 bits (129), Expect = 5e-08
Identities = 22/61 (36%), Positives = 39/61 (63%), Gaps = 5/61 (8%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
+ILDEP SG+DP + + +++ + A +G+TVIL+TH M+ + L DR+ ++ G
Sbjct: 150 LILDEPFSGLDPVNVELLKDVIRE--LAR---AGKTVILSTHQMELVEELCDRVLLLNKG 204
Query: 341 K 341
+
Sbjct: 205 R 205
Score = 46.1 bits (110), Expect = 1e-05
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
Query: 100 MLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP 159
M++G++ SG + R +G P+ L+ K+ V + + + +QLK +
Sbjct: 45 MILGIILPDSGEVLFDGKPLDIA---ARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLK 101
Query: 160 KDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRK 194
K+ A+ I + L + LS G Q+K
Sbjct: 102 KEEARRRIDEWLERLELSEYANKRVEELSKGNQQK 136
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 93.6 bits (233), Expect = 2e-21
Identities = 52/149 (34%), Positives = 81/149 (54%)
Query: 374 IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSG 433
IG L RLT RE+L++++R+ L + + E + L Y DR V S
Sbjct: 77 IGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFST 136
Query: 434 GNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC 493
G K+K++ A AL+ + ++ LDEPTSG+D RR I++ +EGR VI +SH M+E
Sbjct: 137 GMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEV 196
Query: 494 EALCTKLTIMVNGQFTCLGSATHLKSKYG 522
EALC ++ ++ G+ GS L ++
Sbjct: 197 EALCDRVIVLHKGEVVLEGSIEALDARTV 225
Score = 54.7 bits (132), Expect = 3e-08
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAII 337
S ++LDEPTSG+D +RR + + ++ GR VI ++H M E + L DR+ ++
Sbjct: 152 PSILVLDEPTSGLDIRTRRKFHDFIKQL-----KNEGRAVIFSSHIMQEVEALCDRVIVL 206
Query: 338 AAGKLQCCGS 347
G++ GS
Sbjct: 207 HKGEVVLEGS 216
Score = 53.2 bits (128), Expect = 9e-08
Identities = 22/97 (22%), Positives = 44/97 (45%)
Query: 100 MLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP 159
M+ +L SG I D D + +RR +GV L+ +LT E++ ++++L +
Sbjct: 47 MIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLS 106
Query: 160 KDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLD 196
+ + I+ + L + S GM++K+
Sbjct: 107 RKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVA 143
>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 94.7 bits (236), Expect = 2e-21
Identities = 55/234 (23%), Positives = 97/234 (41%), Gaps = 11/234 (4%)
Query: 367 SAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDR 426
S K+ IGY P+ L ++T + L++ + ++ +P + + L + + +
Sbjct: 67 SQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTK 126
Query: 427 EVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILT 486
+++ LS GN++K+ A++ L+ LDEP SG+DP L I EG +I +
Sbjct: 127 KIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFS 186
Query: 487 SHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCAEGRSADAQTYLSLN 546
SH ME E LC +L ++ GQ G+ ++ +G+ K E D N
Sbjct: 187 SHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFGK----KRLVIES---DLSLEELAN 239
Query: 547 LPVADLVETHATQLQYRISGAVSDLGALFRTLESAKTEAGLIVDYSLSQTSLED 600
+P + + +F G I + L + SL D
Sbjct: 240 IPGILKITETKDGSWRIQIENETVAREIF----QEVARDGYIQRFELQEPSLHD 289
Score = 58.5 bits (142), Expect = 2e-09
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 100 MLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP 159
M++G+L + G + I+ +G P+ L+ K+TVE+ + + ++LK +P
Sbjct: 47 MILGLLEPTEGEITWNGGPLSQ---EIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMP 103
Query: 160 KDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKL 195
K Q ++ + L I K+T LS G Q+K+
Sbjct: 104 KAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKI 139
Score = 52.7 bits (127), Expect = 2e-07
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
+ILDEP SG+DP + ELL + G T+I ++H M+ + L DR+ ++ G
Sbjct: 152 LILDEPFSGLDPVNV----ELLKDAIFELKE-EGATIIFSSHRMEHVEELCDRLLMLKKG 206
Query: 341 KLQCCGSSVFLKNSFAR 357
+ G+ ++ SF +
Sbjct: 207 QTVLYGTVEDIRRSFGK 223
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 87.3 bits (217), Expect = 4e-20
Identities = 30/77 (38%), Positives = 48/77 (62%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
LSGG +++++ A ALL N L+ LDEPTSG+DP +R L + EGR VI+ +H+
Sbjct: 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP 140
Query: 491 EECEALCTKLTIMVNGQ 507
E E ++ ++ +G+
Sbjct: 141 ELAELAADRVIVLKDGK 157
Score = 70.7 bits (174), Expect = 2e-14
Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
Query: 278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAII 337
++LDEPTSG+DP SR + ELL + + GRTVI+ TH + A+L DR+ ++
Sbjct: 99 PDLLLLDEPTSGLDPASRERLLELLRE-----LAEEGRTVIIVTHDPELAELAADRVIVL 153
Query: 338 AAGK 341
GK
Sbjct: 154 KDGK 157
Score = 30.7 bits (70), Expect = 1.1
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 100 MLMGMLPVSSGTAKIYDHDI-RTDMTTIRRSLGVCPQ 135
+ G+L +SG I DI + + +RR +G PQ
Sbjct: 44 AIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ 80
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 85.3 bits (212), Expect = 5e-19
Identities = 38/126 (30%), Positives = 67/126 (53%), Gaps = 4/126 (3%)
Query: 382 ALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLST 441
LT RE+L +R+ + ++E L+ L + ++V+ S G K++L
Sbjct: 82 GFYPNLTARENLRLLARLLGIR----KKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGI 137
Query: 442 AIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLT 501
A+ALLGN L+ LDEPT+G+DP + L I +G V+++SH + E + + ++
Sbjct: 138 ALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIG 197
Query: 502 IMVNGQ 507
I+ G+
Sbjct: 198 IINKGK 203
Score = 55.7 bits (135), Expect = 8e-09
Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 5/62 (8%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
+ILDEPT+G+DP + + EL++ S G TV++++H + E + DRI II G
Sbjct: 148 LILDEPTNGLDPDGIKELRELIL-----SLRDQGITVLISSHLLSEIQKVADRIGIINKG 202
Query: 341 KL 342
KL
Sbjct: 203 KL 204
Score = 39.5 bits (93), Expect = 0.002
Identities = 17/96 (17%), Positives = 38/96 (39%), Gaps = 5/96 (5%)
Query: 100 MLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP 159
+++G++ SG R +G + + LT E++ ++L +
Sbjct: 45 IILGLIKPDSGEITFDGKSY-QKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIR 103
Query: 160 KDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKL 195
K E+ +++G K+ S GM+++L
Sbjct: 104 KKRID-EVLDVVGLKDSAKKKVK---GFSLGMKQRL 135
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 79.6 bits (197), Expect = 8e-17
Identities = 29/99 (29%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 410 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFL 469
V E+L L DR LSGG K++++ A L ++ LDEPT+G+DP RR L
Sbjct: 118 RVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRREL 177
Query: 470 WTCIER-AVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 507
+++ G+ +I+ +H++E ++ ++ +G+
Sbjct: 178 LELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGK 216
Score = 61.1 bits (149), Expect = 2e-10
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 264 LVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHY 323
VA+ + AM ++LDEPT+G+DP RR + ELL K+ G+T+I+ TH
Sbjct: 146 RVAIAGVLAMG---PEILLLDEPTAGLDPKGRRELLELLKKL----KEEGGKTIIIVTHD 198
Query: 324 MDEADLLGDRIAIIAAGKLQCCGS 347
++ DR+ ++ GK+ G
Sbjct: 199 LELVLEYADRVVVLDDGKILADGD 222
Score = 29.5 bits (67), Expect = 4.5
Identities = 21/100 (21%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 100 MLMGMLPVSSGTAKIYDHDIRT--DMTTIRRSLGVCPQY--NALFDKLTVEEHMWFYSQL 155
+L G+L +SG + D + + +R+ +G+ Q + LF TVE+ + F +
Sbjct: 49 LLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFG-PTVEDEVAFGLEN 107
Query: 156 KQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKL 195
+P++ + ++ + +G+ LSGG ++++
Sbjct: 108 LGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRV 147
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 80.0 bits (198), Expect = 8e-17
Identities = 42/195 (21%), Positives = 81/195 (41%), Gaps = 11/195 (5%)
Query: 350 FLKNSFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLEF-----YSRVRNL-- 402
LK S ++ ++ IGY PQ ++ DR P + Y +
Sbjct: 53 LLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSV-DRSFPITVKDVVLLGRYGKKGWFRR 111
Query: 403 PSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
+ V+E+L + + DR++ LSGG K+++ A AL N L+ LDEP +G+D
Sbjct: 112 LNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVD 171
Query: 463 PGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS--ATHLKSK 520
++ ++ ++ EG+ V++ +H++ A + I +N G +
Sbjct: 172 VAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDR-VICLNRHLIASGPPEEVLTEEN 230
Query: 521 YGQGYSVKVRCAEGR 535
+ + + A
Sbjct: 231 LEKAFGGSLAHALAG 245
Score = 46.8 bits (112), Expect = 1e-05
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 11/82 (13%)
Query: 269 VLFAMSFVPASTVI-LDEPTSGVDPYSRRSIWELLIKVYYASHSL--SGRTVILTTHYMD 325
VL A + ++ LDEP +GVD ++ I++LL L G+TV++ TH +
Sbjct: 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLL-------KELRQEGKTVLMVTHDLG 200
Query: 326 EADLLGDRIAIIAAGKLQCCGS 347
DR+ + L G
Sbjct: 201 LVMAYFDRVICL-NRHLIASGP 221
Score = 29.9 bits (68), Expect = 3.8
Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 19/106 (17%)
Query: 100 MLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDK---LTVEE--------H 148
++G+L SSG KI+ +R +R +G PQ + D+ +TV++
Sbjct: 49 AILGLLKPSSGEIKIFGKPVRKRRKRLR--IGYVPQ-KSSVDRSFPITVKDVVLLGRYGK 105
Query: 149 MWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGG-MQR 193
++ +L + K+ E +G + ++ LSGG QR
Sbjct: 106 KGWFRRLNKKDKEKVD-EALERVGMEDLRDRQIG---ELSGGQKQR 147
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 77.6 bits (192), Expect = 2e-16
Identities = 43/138 (31%), Positives = 63/138 (45%), Gaps = 30/138 (21%)
Query: 371 KSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRT 430
+ IGY PQ D L+ LT RE L F + L R
Sbjct: 81 RKIIGYVPQDDILHPTLTVRETLMF--------AAKL---------------------RG 111
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
LSGG ++++S A+ L+ N L+FLDEPTSG+D + + + + R GR +I + H
Sbjct: 112 LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQP 171
Query: 491 -EECEALCTKLTIMVNGQ 507
E L KL ++ G+
Sbjct: 172 SSEIFELFDKLLLLSQGR 189
Score = 41.8 bits (99), Expect = 3e-04
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 279 STVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTH 322
S + LDEPTSG+D S + LL ++ + +GRT+I + H
Sbjct: 131 SLLFLDEPTSGLDSSSALQVMSLLRRL-----ADTGRTIICSIH 169
Score = 33.7 bits (78), Expect = 0.15
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 79 LGPSGITLGLHTLGLEFVS-RSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYN 137
+GPSG G TL L ++ R +G+ SG I + D + R+ +G PQ +
Sbjct: 41 MGPSGA--GKSTL-LNALAGRRTGLGV----SGEVLINGRPL--DKRSFRKIIGYVPQDD 91
Query: 138 ALFDKLTVEEHMWFYSQLKQV 158
L LTV E + F ++L+ +
Sbjct: 92 ILHPTLTVRETLMFAAKLRGL 112
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 75.0 bits (185), Expect = 2e-15
Identities = 31/102 (30%), Positives = 50/102 (49%)
Query: 408 NTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARR 467
N L L +R +LSGG K++L+ A ALL L+ DEPTSG+D
Sbjct: 104 NEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNME 163
Query: 468 FLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFT 509
+ I ++G+ VI+ +H+ E +C ++ ++ NG
Sbjct: 164 RVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
Score = 46.1 bits (110), Expect = 1e-05
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
+I DEPTSG+D + + EL+ ++ + G+ VI+ TH + + DR+ ++A G
Sbjct: 148 LIFDEPTSGLDYKNMERVGELIREL-----AAQGKAVIVITHDYEFLAKVCDRVLLLANG 202
Query: 341 KL 342
+
Sbjct: 203 AI 204
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 77.1 bits (190), Expect = 2e-15
Identities = 47/180 (26%), Positives = 87/180 (48%), Gaps = 15/180 (8%)
Query: 339 AGKLQCCGSSVFLKNSFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSR 398
+G +Q CG V L+N + IGY P+ + L + RE+L+F +
Sbjct: 56 SGSVQVCGEDV-LQNP----------KEVQR---NIGYLPEHNPLYLDMYVREYLQFIAG 101
Query: 399 VRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPT 458
+ + LL V E + L +++ LS G ++++ A AL+ + ++ LDEPT
Sbjct: 102 IYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPT 161
Query: 459 SGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 518
+G+DP + I + + + + +IL++H M+E EA+C ++ I+ G+ L
Sbjct: 162 TGLDPNQLVEIRNVI-KNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELS 220
Score = 48.6 bits (116), Expect = 4e-06
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
+ILDEPT+G+DP I ++ + +T+IL+TH M E + + DR+ II G
Sbjct: 155 LILDEPTTGLDPNQLVEIRNVIKNIGKD------KTIILSTHIMQEVEAICDRVIIINKG 208
Query: 341 KL 342
K+
Sbjct: 209 KI 210
Score = 47.8 bits (114), Expect = 8e-06
Identities = 32/137 (23%), Positives = 63/137 (45%), Gaps = 20/137 (14%)
Query: 67 YGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIR 120
+ + S E Q LGP+G G T ++ G LP SG+ ++ D+
Sbjct: 16 NALDEVSFEAQKGRIVGFLGPNGA--GKSTT------MKIITGYLPPDSGSVQVCGEDVL 67
Query: 121 TDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGI---P 177
+ ++R++G P++N L+ + V E++ F + + + L + + MI +G+
Sbjct: 68 QNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQ 127
Query: 178 HKRTSLANTLSGGMQRK 194
HK+ LS G +++
Sbjct: 128 HKKI---GQLSKGYRQR 141
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 75.2 bits (186), Expect = 3e-15
Identities = 30/97 (30%), Positives = 48/97 (49%)
Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW 470
E L + L +DR LS G +R+L A AL + L+ LDEP +G++P L
Sbjct: 124 AEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELA 183
Query: 471 TCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 507
I G V+L H+M+ +L ++T++ G+
Sbjct: 184 ELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGR 220
Score = 37.4 bits (88), Expect = 0.013
Identities = 24/111 (21%), Positives = 41/111 (36%), Gaps = 16/111 (14%)
Query: 100 MLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCP--QYNALFDKLTVEE---------- 147
++ G L +SG+ DI LG+ Q LF +LTV E
Sbjct: 45 LISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQART 104
Query: 148 --HMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLD 196
+ ++ + + E ++ +G+ A LS G QR+L+
Sbjct: 105 GSGLLLARARREEREARERAE--ELLERVGLADLADRPAGELSYGQQRRLE 153
Score = 37.0 bits (87), Expect = 0.014
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
++LDEP +G++P + EL+ ++ G TV+L H MD L DR+ ++ G
Sbjct: 165 LLLDEPAAGLNPEETEELAELIREL-----RERGITVLLVEHDMDVVMSLADRVTVLDQG 219
Query: 341 KL 342
++
Sbjct: 220 RV 221
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 73.9 bits (182), Expect = 9e-15
Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 3/135 (2%)
Query: 364 DMKSAPQK--SYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALG 421
D++ AP+ + +G Q L+ L+ R++L +++ + L + E L + L
Sbjct: 64 DLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELLARLGLA 123
Query: 422 HYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIER-AVSEG 480
+D +VR L+GG++R++ A ALL L+ LDEPT G+DP +R + + A +G
Sbjct: 124 ERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQG 183
Query: 481 RCVILTSHNMEECEA 495
V+ +H ++E EA
Sbjct: 184 LSVLWATHLVDEIEA 198
Score = 50.4 bits (121), Expect = 8e-07
Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
Query: 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNA 138
LGP+G G TL F S+L + G + HD+R LGV Q
Sbjct: 33 LGPNGA--GKSTL---F---SLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPT 84
Query: 139 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLD 196
L L+V +++ +++ L + + A+ I+ ++ LG+ + L+GG +R+++
Sbjct: 85 LDLDLSVRQNLRYHAALHGLSRAEARARIAELLARLGLAERADDKVRELNGGHRRRVE 142
Score = 39.6 bits (93), Expect = 0.002
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 11/64 (17%)
Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLS---GRTVILTTHYMDEADLLGDRIAIIA 338
+LDEPT G+DP SR +I + +L+ G +V+ TH +DE + DR+ ++
Sbjct: 155 LLDEPTVGLDPASRAAITAHV-------RALARDQGLSVLWATHLVDEIE-ADDRLVVLH 206
Query: 339 AGKL 342
G++
Sbjct: 207 RGRV 210
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 72.9 bits (180), Expect = 1e-14
Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 1/141 (0%)
Query: 368 APQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDRE 427
P++ IG Q AL LT E++ F ++R +P + V E L L +R
Sbjct: 68 PPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRY 127
Query: 428 VRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILT 486
LSGG +++++ A AL L+ LDEP S +D R L ++ E G I
Sbjct: 128 PHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYV 187
Query: 487 SHNMEECEALCTKLTIMVNGQ 507
+H+ EE AL ++ +M G+
Sbjct: 188 THDQEEALALADRIAVMNEGR 208
Score = 51.8 bits (125), Expect = 2e-07
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 283 LDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKL 342
LDEP S +D R + E L ++ G T I TH +EA L DRIA++ G++
Sbjct: 154 LDEPLSALDAKLREELREELKEL----QRELGITTIYVTHDQEEALALADRIAVMNEGRI 209
Query: 343 QCCG 346
G
Sbjct: 210 VQVG 213
Score = 50.6 bits (122), Expect = 4e-07
Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNA 138
LGPSG G TL L ++ G+ SG I D+ T + RR++G+ Q A
Sbjct: 32 LGPSGC--GKTTL-LR-----LIAGLERPDSGEILIDGRDV-TGVPPERRNIGMVFQDYA 82
Query: 139 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRK 194
LF LTV E++ F +L+ VPK + + ++ +G+ + LSGG Q++
Sbjct: 83 LFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQR 138
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 73.8 bits (182), Expect = 1e-14
Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 19/164 (11%)
Query: 374 IGYCPQFDALNDRLTPRE--------HLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSD 425
+ Y PQ + LT E HL + R PS IV E+L L H +D
Sbjct: 78 LAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGR----PSKEDEEIVEEALELLGLEHLAD 133
Query: 426 REVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGRCVI 484
R V LSGG ++++ A AL TP++ LDEPTS +D + + + +G V+
Sbjct: 134 RPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVV 193
Query: 485 LTSHNMEECEALCTKLTIMVNGQFTCLGSAT------HLKSKYG 522
+ H++ L ++ +G+ G+ +L+ YG
Sbjct: 194 MVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEENLREVYG 237
Score = 49.9 bits (120), Expect = 1e-06
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 269 VLFAMSFVPASTVI-LDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEA 327
VL A + + ++ LDEPTS +D + + ELL + + G TV++ H ++ A
Sbjct: 147 VLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDL----NREKGLTVVMVLHDLNLA 202
Query: 328 DLLGDRIAIIAAGKL 342
D + ++ GK+
Sbjct: 203 ARYADHLILLKDGKI 217
Score = 40.6 bits (96), Expect = 0.001
Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 24/121 (19%)
Query: 100 MLMGMLPVSSGTAKIYDHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEE--------HMW 150
L G+L SG + DI + + + L PQ + LTV E H+
Sbjct: 47 CLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLG 106
Query: 151 FYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAA 210
+ + + +++ + + + G+ H + LSGG +R+ + IA
Sbjct: 107 LFGRPSKEDEEIVEEALELL----GLEHLADRPVDELSGG-ERQ----------RVLIAR 151
Query: 211 V 211
Sbjct: 152 A 152
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 71.4 bits (176), Expect = 4e-14
Identities = 45/197 (22%), Positives = 83/197 (42%), Gaps = 23/197 (11%)
Query: 331 GDRIAIIA---AGKLQCCGSSVFLK-----NSFARGYYLSLDMKSAPQKSYIGYCPQFDA 382
G+ +AI+ AGK S LK G ++ IGY PQ +
Sbjct: 25 GEFLAIVGPNGAGK------STLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRS 78
Query: 383 LNDRLTPREHLEFYSRVRNLPSVLLNTI-------VNESLNKFALGHYSDREVRTLSGGN 435
+ DR P + L + V+E+L + L +DR++ LSGG
Sbjct: 79 I-DRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQ 137
Query: 436 KRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEA 495
++++ A AL+ + L+ LDEP +G+DP + ++ + EG +++ +H++
Sbjct: 138 QQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLE 197
Query: 496 LCTKLTIMVNGQFTCLG 512
+ +++N G
Sbjct: 198 YFDR-VLLLNRTVVASG 213
Score = 47.1 bits (113), Expect = 6e-06
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 11/78 (14%)
Query: 269 VLFAMSFVP-ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEA 327
VL A + V ++LDEP +GVDP ++ I+ELL ++ G T+++ TH +
Sbjct: 141 VLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLREL-----RREGMTILVVTHDLGLV 195
Query: 328 DLLGDRIA-----IIAAG 340
DR+ ++A+G
Sbjct: 196 LEYFDRVLLLNRTVVASG 213
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 71.5 bits (176), Expect = 4e-14
Identities = 40/120 (33%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 374 IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTI-----VNESLNKFALGHYSDREV 428
+ Y Q D L LT RE L + + +R LP + I + L AL V
Sbjct: 83 VAYVRQDDILLPGLTVRETLTYTAILR-LPRKSSDAIRKKRVEDVLLRDLALTRIGGNLV 141
Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 488
+ +SGG +R++S A+ LL + ++ LDEPTSG+D L + + + R VILT H
Sbjct: 142 KGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIH 201
Score = 40.7 bits (96), Expect = 8e-04
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 8/68 (11%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADL--LGDRIAIIA 338
+ILDEPTSG+D ++ ++ L + A R VILT H +DL L DRI +++
Sbjct: 165 LILDEPTSGLDSFTALNLVSTLSQ--LAR---RNRIVILTIH-QPRSDLFRLFDRILLLS 218
Query: 339 AGKLQCCG 346
+G++ G
Sbjct: 219 SGEIVYSG 226
Score = 31.9 bits (73), Expect = 0.71
Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Query: 125 TIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK-QVPKDLAQ---LEISNMIGDLGIPHKR 180
++ + Q + L LTV E + + + L+ A ++ DL +
Sbjct: 78 QFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIG 137
Query: 181 TSLANTLSGGMQRKL 195
+L +SGG +R++
Sbjct: 138 GNLVKGISGGERRRV 152
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 70.2 bits (173), Expect = 5e-14
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Query: 410 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPG-ARRF 468
V ++L L H +DR LSGG ++++ A AL P++ LDEPTS +D
Sbjct: 77 YVPQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIEL 136
Query: 469 LWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLG 512
L A G+ V++ H++ ++ ++ +G+ G
Sbjct: 137 LELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
Score = 50.9 bits (123), Expect = 2e-07
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 269 VLFAMSFVPASTVI-LDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEA 327
VL A + ++ LDEPTS +D + + ELL ++ + G+TV++ H ++ A
Sbjct: 106 VLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRL---ARE-RGKTVVMVLHDLNLA 161
Query: 328 DLLGDRIAIIAAGKLQCCG 346
DR+ ++ G++ G
Sbjct: 162 ARYADRVILLKDGRIVAQG 180
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 71.6 bits (176), Expect = 5e-14
Identities = 43/140 (30%), Positives = 74/140 (52%), Gaps = 1/140 (0%)
Query: 369 PQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREV 428
P+K I Y PQ AL +T +++ + + R + + V E + H +R+
Sbjct: 68 PEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP 127
Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTS 487
TLSGG +++++ A AL+ N ++ LDEP S +D + L +++ E G V+ +
Sbjct: 128 ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVT 187
Query: 488 HNMEECEALCTKLTIMVNGQ 507
H+ EE AL K+ IM+NG+
Sbjct: 188 HDFEEAWALADKVAIMLNGK 207
Score = 52.0 bits (125), Expect = 2e-07
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
++LDEP S +D ++ + E L K+ G TV+ TH +EA L D++AI+ G
Sbjct: 151 LLLDEPFSALDVRTKEKLREELKKI----RKEFGVTVLHVTHDFEEAWALADKVAIMLNG 206
Query: 341 KL 342
KL
Sbjct: 207 KL 208
Score = 50.8 bits (122), Expect = 5e-07
Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 10/116 (8%)
Query: 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNA 138
LGP+G ++ LE + G + SG + DI T++ +R + PQ A
Sbjct: 31 LGPTGSG---KSVLLE-----TIAGFIKPDSGKILLNGKDI-TNLPPEKRDISYVPQNYA 81
Query: 139 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGG-MQR 193
LF +TV +++ + + ++V K + ++ + LGI H TLSGG QR
Sbjct: 82 LFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQR 137
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 70.4 bits (173), Expect = 7e-14
Identities = 46/141 (32%), Positives = 69/141 (48%), Gaps = 5/141 (3%)
Query: 369 PQKSYIGYCPQFDALNDRLTPREHLEF-YSRVRNLPSVLLNTIVNESLNKFALGHYSDRE 427
PQ+ IG Q AL L RE+L F R RN + V+E L+ L H +R
Sbjct: 72 PQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRIS---VDELLDLLGLDHLLNRY 128
Query: 428 VRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILT 486
LSGG K++++ A AL L+ LDEP S +D R L +++ VI
Sbjct: 129 PAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFV 188
Query: 487 SHNMEECEALCTKLTIMVNGQ 507
+H++ E E L ++ +M +G+
Sbjct: 189 THDLSEAEYLADRIVVMEDGR 209
Score = 43.8 bits (104), Expect = 9e-05
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
++LDEP S +D R + L ++ VI TH + EA+ L DRI ++ G
Sbjct: 153 LLLDEPFSALDRALRLQLLPELKQI----KKNLNIPVIFVTHDLSEAEYLADRIVVMEDG 208
Query: 341 KLQ 343
+LQ
Sbjct: 209 RLQ 211
Score = 28.8 bits (65), Expect = 6.2
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 116 DHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLG 175
D + ++ +R +G+ Q ALF L V E++ F + K+ +D ++ ++ LG
Sbjct: 63 DSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVD--ELLDLLG 120
Query: 176 IPHKRTSLANTLSGGMQRK 194
+ H LSGG +++
Sbjct: 121 LDHLLNRYPAQLSGGEKQR 139
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 70.3 bits (172), Expect = 2e-13
Identities = 46/145 (31%), Positives = 75/145 (51%), Gaps = 1/145 (0%)
Query: 374 IGYCPQFDALNDRLTPREHLEFYSRVR-NLPSVLLNTIVNESLNKFALGHYSDREVRTLS 432
IGY PQ ++ RL+ ++L ++R +L + NE + +F + H D ++LS
Sbjct: 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLS 139
Query: 433 GGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEE 492
GG +R++ A AL N I LDEP +G+DP + + IE G V++T HN+ E
Sbjct: 140 GGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRE 199
Query: 493 CEALCTKLTIMVNGQFTCLGSATHL 517
A+C + I+ G G+ T +
Sbjct: 200 TLAVCERAYIVSQGHLIAHGTPTEI 224
Score = 43.3 bits (102), Expect = 1e-04
Identities = 28/112 (25%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 100 MLMGMLPVSSGTAKIYDHDIR--TDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQ 157
M++G++P +G I D DI RR +G PQ ++F +L+V +++ Q++
Sbjct: 48 MVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD 107
Query: 158 -VPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWI 208
+ + + + ++ + I H R S+ +LSGG +R+++ + N +I
Sbjct: 108 DLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFI 159
Score = 32.2 bits (73), Expect = 0.56
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
++LDEP +GVDP S + IK SG V++T H + E + +R I++ G
Sbjct: 159 ILLDEPFAGVDPIS-----VIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQG 213
Query: 341 KLQCCGS 347
L G+
Sbjct: 214 HLIAHGT 220
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 69.4 bits (170), Expect = 2e-13
Identities = 42/125 (33%), Positives = 69/125 (55%), Gaps = 4/125 (3%)
Query: 382 ALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLST 441
L + LT RE+L+ ++ + LP ++ ++E LN L + ++ + S G K++L
Sbjct: 80 PLYENLTARENLKVHTTLLGLP----DSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGI 135
Query: 442 AIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLT 501
AIALL + L+ LDEPT+G+DP + L I +G VIL+SH + E + L +
Sbjct: 136 AIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIG 195
Query: 502 IMVNG 506
I+ G
Sbjct: 196 IISEG 200
Score = 51.6 bits (124), Expect = 2e-07
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGK 341
ILDEPT+G+DP + + EL+ S G TVIL++H + E L D I II+ G
Sbjct: 147 ILDEPTNGLDPIGIQELRELI-----RSFPEQGITVILSSHILSEVQQLADHIGIISEGV 201
Query: 342 L 342
L
Sbjct: 202 L 202
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 69.3 bits (170), Expect = 7e-13
Identities = 41/142 (28%), Positives = 62/142 (43%), Gaps = 23/142 (16%)
Query: 394 EFYSRVRNLPSVL-LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLI 452
EF R+ L +L L + VR LS G + + A ALL ++
Sbjct: 132 EFAERLDFLTEILDLEGFLKW-------------PVRKLSLGQRMRAELAAALLHPPKVL 178
Query: 453 FLDEPTSGMDPGA----RRFL-WTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 507
FLDEPT G+D A R FL ER + V+LT+H ++ LC ++ ++ GQ
Sbjct: 179 FLDEPTVGLDVNAQANIREFLKEYNEERQAT----VLLTTHIFDDIATLCDRVLLIDQGQ 234
Query: 508 FTCLGSATHLKSKYGQGYSVKV 529
G+ L+ ++G V
Sbjct: 235 LVFDGTLAQLQEQFGPYKEFSV 256
Score = 50.8 bits (122), Expect = 8e-07
Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 8/115 (6%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
+ LDEPT G+D ++ +I E L K Y TV+LTTH D+ L DR+ +I G
Sbjct: 178 LFLDEPTVGLDVNAQANIREFL-KEYNEER---QATVLLTTHIFDDIATLCDRVLLIDQG 233
Query: 341 KLQCCGSSVFLKNSFARGYYLSLDMK---SAPQKSYIGYCPQFDALNDRL-TPRE 391
+L G+ L+ F S+++K S Q + +G + LN + RE
Sbjct: 234 QLVFDGTLAQLQEQFGPYKEFSVELKQAKSLSQLALLGDVTIEEGLNIKNDVSRE 288
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 67.3 bits (165), Expect = 1e-12
Identities = 47/175 (26%), Positives = 74/175 (42%), Gaps = 17/175 (9%)
Query: 331 GDRIAIIAAGKLQCCGSSVFLK-----NSFARGYYLSLDMKSAPQKS---------YIGY 376
G AII G+ G S L F G ++ P S +GY
Sbjct: 24 GKMYAII--GE-SGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKASKFRREKLGY 80
Query: 377 CPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNK 436
Q AL + T E+L+ + + L E+L K L +++ LSGG +
Sbjct: 81 LFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQ 140
Query: 437 RKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 491
++++ A A+L PLI DEPT +DP R + + EG+ +I+ +H+ E
Sbjct: 141 QRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE 195
Score = 31.8 bits (73), Expect = 0.62
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
Query: 279 STVIL-DEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRI 334
+IL DEPT +DP +R + +LL+++ + G+T+I+ TH + A DR+
Sbjct: 153 PPLILADEPTGSLDPKNRDEVLDLLLEL-----NDEGKTIIIVTHDPEVAK-QADRV 203
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 190
Score = 65.9 bits (161), Expect = 2e-12
Identities = 25/81 (30%), Positives = 46/81 (56%)
Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW 470
V E+L +R LSGG K++++ A A+ ++ LDEPT+G+DP R +
Sbjct: 108 VREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQML 167
Query: 471 TCIERAVSEGRCVILTSHNME 491
+ R +EG V++++H+++
Sbjct: 168 AILRRLRAEGMTVVISTHDVD 188
Score = 38.2 bits (89), Expect = 0.004
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 265 VAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYM 324
VA+ AM ++LDEPT+G+DP R + +L ++ G TV+++TH +
Sbjct: 136 VAIAGAVAMR---PDVLLLDEPTAGLDPAGREQMLAILRRLRAE-----GMTVVISTHDV 187
Query: 325 DEA 327
D A
Sbjct: 188 DLA 190
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 69.5 bits (171), Expect = 2e-12
Identities = 26/85 (30%), Positives = 49/85 (57%)
Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 484
++ + TLSGGN++K+ A L + ++ LDEPT G+D GA+ ++ I +EG+ ++
Sbjct: 396 EQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAIL 455
Query: 485 LTSHNMEECEALCTKLTIMVNGQFT 509
+ S + E L ++ +M G+
Sbjct: 456 MISSELPELLGLSDRILVMREGRIV 480
Score = 65.2 bits (160), Expect = 4e-11
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPG-ARRFLWTCIERAVSEGRCV 483
D V LS ++ + A AL + ++ LDEPT+ + R I R ++G +
Sbjct: 140 DTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDL-IRRLKAQGVAI 198
Query: 484 ILTSHNMEECEALCTKLTIMVNGQFTC 510
I SH ++E + ++T++ +G+
Sbjct: 199 IYISHRLDEVFEIADRITVLRDGRVVG 225
Score = 46.4 bits (111), Expect = 4e-05
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAII 337
+ILDEPT G+D ++ I+ L+ + A+ G+ +++ + + E L DRI ++
Sbjct: 420 PKVLILDEPTRGIDVGAKAEIYRLIRE--LAAE---GKAILMISSELPELLGLSDRILVM 474
Query: 338 AAGKL 342
G++
Sbjct: 475 REGRI 479
Score = 38.6 bits (91), Expect = 0.007
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 10/73 (13%)
Query: 272 AMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSL--SGRTVILTTHYMDEADL 329
A+SF A +ILDEPT+ + +++L+ L G +I +H +DE
Sbjct: 159 ALSF-DARVLILDEPTAALTVKETERLFDLI-------RRLKAQGVAIIYISHRLDEVFE 210
Query: 330 LGDRIAIIAAGKL 342
+ DRI ++ G++
Sbjct: 211 IADRITVLRDGRV 223
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 63.9 bits (156), Expect = 2e-12
Identities = 34/87 (39%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 374 IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDRE-VRTLS 432
IG Q L LT RE+L F L + E+L + L + DRE V TLS
Sbjct: 38 IGVVFQDPQLFPELTVRENLFF-----GLRDKEADARAEEALERVGLPDFLDREPVGTLS 92
Query: 433 GGNKRKLSTAIALLGNTPLIFLDEPTS 459
GG K++++ A ALL L+ LDEPT+
Sbjct: 93 GGQKQRVAIARALLKKPKLLLLDEPTA 119
Score = 61.2 bits (149), Expect = 2e-11
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Query: 100 MLMGMLPVSSGTAKIYDHDIRTDMTT--IRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQ 157
++ G+L +SGT + D + +R+ +GV Q LF +LTV E+++F
Sbjct: 6 LITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG----- 60
Query: 158 VPKDLAQLEISNMIGDLGIPHKR-TSLANTLSGGMQRKL 195
+ A + +G+P TLSGG ++++
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDREPVGTLSGGQKQRV 99
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 66.1 bits (162), Expect = 3e-12
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Query: 381 DALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLS 440
+A+ LT E+LEF++ + +L L + LS G KR+++
Sbjct: 82 NAMKPALTVAENLEFWAAFLGGE----ELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVA 137
Query: 441 TAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 489
A L+ N P+ LDEPT+ +D A I +++G VI +H
Sbjct: 138 LARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHI 186
Score = 33.7 bits (78), Expect = 0.16
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTH 322
ILDEPT+ +D + EL+ +H G VI TH
Sbjct: 150 ILDEPTAALDAAAVALFAELI-----RAHLAQGGIVIAATH 185
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to NatA.
NatA is the ATPase component of a bacterial ABC-type
Na+ transport system called NatAB, which catalyzes
ATP-dependent electrogenic Na+ extrusion without
mechanically coupled to proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of the single ATP-binding
protein and the single integral membrane protein.
Length = 236
Score = 66.2 bits (162), Expect = 3e-12
Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 1/121 (0%)
Query: 387 LTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL 446
L + + + +LP ++E L D VR LS G + + A ALL
Sbjct: 110 LPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALL 169
Query: 447 GNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVN 505
++FLDEPT G+D A+ + ++ E G V+LTSH M++ EAL ++ ++
Sbjct: 170 HEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDK 229
Query: 506 G 506
G
Sbjct: 230 G 230
Score = 51.9 bits (125), Expect = 2e-07
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGK 341
LDEPT G+D ++ +I L K Y G TV+LT+HYM + + L R+ +I G+
Sbjct: 176 FLDEPTIGLDVVAQENIRNFL-KEYNRER---GTTVLLTSHYMKDIEALARRVLVIDKGR 231
Query: 342 LQ 343
L
Sbjct: 232 LL 233
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 65.4 bits (160), Expect = 4e-12
Identities = 43/153 (28%), Positives = 66/153 (43%), Gaps = 12/153 (7%)
Query: 337 IAAGKLQCCGSSVFLKNSFARGYYLSLDMKSAPQKS-YIGYCPQFDALNDRLTPREHLEF 395
I AG L+ V+ + + +S Q Y+G+ P + LT E+L F
Sbjct: 47 ILAGLLRPDAGEVYWQGE-----PIQNVRESYHQALLYLGHQP---GIKTELTALENLHF 98
Query: 396 YSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLD 455
+ R S TI E+L + L D V LS G +R+++ A L PL LD
Sbjct: 99 WQRFHG--SGNAATIW-EALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILD 155
Query: 456 EPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 488
EP + +D L + ++G V+LT+H
Sbjct: 156 EPFTALDKEGVALLTALMAAHAAQGGIVLLTTH 188
Score = 40.0 bits (94), Expect = 0.002
Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 3/102 (2%)
Query: 100 MLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP 159
+L G+L +G I+ + ++L + +LT E++ F+ +
Sbjct: 47 ILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSG 106
Query: 160 KDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVW 201
E +G G+ LS G QR++ ++W
Sbjct: 107 NAATIWEALAQVGLAGLEDL---PVGQLSAGQQRRVALARLW 145
Score = 34.2 bits (79), Expect = 0.11
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTH 322
PA ILDEP + +D + L+ A+H+ G V+LTTH
Sbjct: 148 PAPLWILDEPFTALDKEGVALLTALM-----AAHAAQGGIVLLTTH 188
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 63.7 bits (156), Expect = 7e-12
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGK 341
+LDEPTS +DP +RR + LL + + G TV+L TH +DEA L DR+ ++ GK
Sbjct: 123 LLDEPTSALDPITRREVRALLKSL----QAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
Score = 62.2 bits (152), Expect = 3e-11
Identities = 24/78 (30%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHN 489
LSGG +++++ A AL + ++ LDEPTS +DP RR + ++ ++ G V+L +H+
Sbjct: 101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHD 160
Query: 490 MEECEALCTKLTIMVNGQ 507
++E L ++ ++ +G+
Sbjct: 161 LDEAARLADRVVVLRDGK 178
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport
system. The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium.
Length = 232
Score = 64.5 bits (158), Expect = 1e-11
Identities = 40/134 (29%), Positives = 68/134 (50%)
Query: 374 IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSG 433
IGY PQ ++ +LT E++ +R L + E L +F + H + +LSG
Sbjct: 77 IGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSG 136
Query: 434 GNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC 493
G +R++ A AL N + LDEP +G+DP A + + I+ G V++T HN+ E
Sbjct: 137 GERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRET 196
Query: 494 EALCTKLTIMVNGQ 507
++ + I+ G+
Sbjct: 197 LSITDRAYIIYEGK 210
Score = 54.5 bits (132), Expect = 3e-08
Identities = 30/99 (30%), Positives = 58/99 (58%), Gaps = 4/99 (4%)
Query: 100 MLMGMLPVSSGTAKIYDHDIRTDMTTIRRS-LGVC--PQYNALFDKLTVEEHMWFYSQLK 156
M++G++ SG + DI T + +R+ LG+ PQ ++F KLTVEE++ +++
Sbjct: 45 MIVGLVKPDSGKILLDGQDI-TKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIR 103
Query: 157 QVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKL 195
+ K + ++ ++ + I H R S A++LSGG +R++
Sbjct: 104 GLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRV 142
Score = 37.5 bits (88), Expect = 0.010
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRT--VILTTHYMDEADLLGDRIAIIA 338
++LDEP +GVDP + + I +++ L R V++T H + E + DR II
Sbjct: 155 LLLDEPFAGVDPIAVQDIQKII-------KILKDRGIGVLITDHNVRETLSITDRAYIIY 207
Query: 339 AGKLQCCGSSV-FLKNSFARGYYL 361
GK+ G+ N R YL
Sbjct: 208 EGKVLAEGTPEEIAANELVRKVYL 231
>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents domain II of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. In members of Carb_Monos
family the single hydrophobic gene product forms a
homodimer, while the ABC protein represents a fusion of
two nucleotide-binding domains. However, it is assumed
that two copies of the ABC domains are present in the
assembled transporter.
Length = 182
Score = 63.2 bits (155), Expect = 1e-11
Identities = 27/78 (34%), Positives = 45/78 (57%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
LSGGN++K+ A L + ++ LDEPT G+D GA+ ++ I G+ V+L S +
Sbjct: 105 LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSEL 164
Query: 491 EECEALCTKLTIMVNGQF 508
+E LC ++ +M G+
Sbjct: 165 DELLGLCDRILVMYEGRI 182
Score = 49.7 bits (120), Expect = 6e-07
Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 5/62 (8%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
+ILDEPT GVD ++ I+ L+ ++ + +G+ V+L + +DE L DRI ++ G
Sbjct: 126 LILDEPTRGVDVGAKAEIYRLIREL-----ADAGKAVLLISSELDELLGLCDRILVMYEG 180
Query: 341 KL 342
++
Sbjct: 181 RI 182
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 64.5 bits (158), Expect = 2e-11
Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Query: 374 IGYCPQFDALNDRLTPREHLEFYSRV-RNLPSVLLNTIVNESLNKFAL-GHYSDREVRTL 431
+G Q AL LT E++ F R LP L+ +V L L G +D L
Sbjct: 87 MGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSEL 146
Query: 432 SGGNKRKLSTAIALLGNTPLIFLDEPTSGMDP-GARRFLWTCIERAVSEGRCVILTSHNM 490
SGG +++++ A A+ + L+FLDEPTSG+DP A E + G VI+ +H++
Sbjct: 147 SGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDL 206
Query: 491 EECEALCTKLTIMVNGQ 507
+ + ++ ++ +G+
Sbjct: 207 DSLLTIADRVAVLADGK 223
Score = 60.3 bits (147), Expect = 5e-10
Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 4/67 (5%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
+ LDEPTSG+DP S I EL+ ++ + +L G TVI+ TH +D + DR+A++A G
Sbjct: 167 LFLDEPTSGLDPISAGVIDELIREL---NDAL-GLTVIMVTHDLDSLLTIADRVAVLADG 222
Query: 341 KLQCCGS 347
K+ G+
Sbjct: 223 KVIAEGT 229
Score = 49.1 bits (118), Expect = 2e-06
Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 20/125 (16%)
Query: 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDI----RTDMTTIRRSLGVCP 134
LG SG G TL R +L G+L G I DI ++ IR+ +GV
Sbjct: 40 LGGSGS--GKSTL-----LRLIL-GLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLF 91
Query: 135 QYNALFDKLTVEEHMWF----YSQL-KQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSG 189
Q ALF LTV E++ F +++L + + ++L +++ ++G G + LSG
Sbjct: 92 QQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKL-ELVGLRGAAADL--YPSELSG 148
Query: 190 GMQRK 194
GM+++
Sbjct: 149 GMRKR 153
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 63.7 bits (156), Expect = 2e-11
Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 2/147 (1%)
Query: 374 IGYCPQFDALNDRLTPREHLEFYSRV-RNLPSVLLNTIVNESLNKFALGHYSDREVRTLS 432
+G Q AL D LT E++ F R L + IV E L L D LS
Sbjct: 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELS 138
Query: 433 GGNKRKLSTAIALLGNTPLIFLDEPTSGMDP-GARRFLWTCIERAVSEGRCVILTSHNME 491
GG K++++ A AL + L+ DEPT+G+DP + G I+ +H+++
Sbjct: 139 GGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD 198
Query: 492 ECEALCTKLTIMVNGQFTCLGSATHLK 518
A+ ++ ++ +G+ G+ L+
Sbjct: 199 TAFAIADRIAVLYDGKIVAEGTPEELR 225
Score = 54.4 bits (132), Expect = 3e-08
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
++ DEPT+G+DP + I +L+ + G T I+ TH +D A + DRIA++ G
Sbjct: 158 LLYDEPTAGLDPIASGVIDDLIRSL----KKELGLTSIMVTHDLDTAFAIADRIAVLYDG 213
Query: 341 KLQCCGSSVFLKNS 354
K+ G+ L+ S
Sbjct: 214 KIVAEGTPEELRAS 227
Score = 50.6 bits (122), Expect = 6e-07
Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 21/124 (16%)
Query: 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDI----RTDMTTIRRSLGVCP 134
+GPSG G TL R ++ G+L SG I DI ++ +RR +G+
Sbjct: 32 IGPSGS--GKSTL-----LRLIV-GLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLF 83
Query: 135 QYNALFDKLTVEEHMWF----YSQL-KQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSG 189
Q ALFD LTV E++ F +++L ++ +++ ++ +G G + LSG
Sbjct: 84 QSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKL-EAVGLRGAEDLYPA---ELSG 139
Query: 190 GMQR 193
GM++
Sbjct: 140 GMKK 143
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 65.0 bits (159), Expect = 2e-11
Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Query: 281 VIL-DEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAA 339
++L DEP +DP +R+ + E + ++ G+T++ TH +DEA L DRIA++ A
Sbjct: 156 ILLMDEPFGALDPITRKQLQEEIKEL----QKELGKTIVFVTHDIDEALKLADRIAVMDA 211
Query: 340 GKLQCCGS 347
G++ +
Sbjct: 212 GEIVQYDT 219
Score = 57.3 bits (139), Expect = 6e-09
Identities = 53/220 (24%), Positives = 91/220 (41%), Gaps = 8/220 (3%)
Query: 374 IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFAL--GHYSDREVRTL 431
IGY Q L LT E++ ++ + +E L+ L Y+DR L
Sbjct: 77 IGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHEL 136
Query: 432 SGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNM 490
SGG ++++ A AL + P++ +DEP +DP R+ L I+ E G+ ++ +H++
Sbjct: 137 SGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDI 196
Query: 491 EECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCAEGRSADAQTYLSLNLPVA 550
+E L ++ +M G+ + + + + V G S LSL + VA
Sbjct: 197 DEALKLADRIAVMDAGEIVQYDTPDEILANPANDF---VEDFFGESERGLRLLSL-VSVA 252
Query: 551 DLVETHATQLQYRISGAVSDLGALFRTLESAKTEAGLIVD 590
D V + D AL L + +VD
Sbjct: 253 DAVRRGEPADGEPLLEGFVDRDALSDFLARGR-SVLPVVD 291
Score = 48.4 bits (116), Expect = 5e-06
Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 19/121 (15%)
Query: 79 LGPSG----ITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-DMTTIRRSLGVC 133
+GPSG TL M+ ++ +SG I DI D +RR +G
Sbjct: 33 IGPSGSGKTTTLK------------MINRLIEPTSGEILIDGEDISDLDPVELRRKIGYV 80
Query: 134 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHK--RTSLANTLSGGM 191
Q LF LTV E++ +L K+ + ++ +G+ + LSGG
Sbjct: 81 IQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQ 140
Query: 192 Q 192
Q
Sbjct: 141 Q 141
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 64.1 bits (157), Expect = 2e-11
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Query: 413 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPG-ARRFLWT 471
E L LG +DR LS G +R+L A AL L+ LDEP +G++P
Sbjct: 132 ELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAEL 191
Query: 472 CIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 507
E G ++L H+M+ L ++ ++ G+
Sbjct: 192 IRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGE 227
Score = 35.2 bits (82), Expect = 0.067
Identities = 27/113 (23%), Positives = 42/113 (37%), Gaps = 14/113 (12%)
Query: 98 RSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCP--QYNALFDKLTVEEHM------ 149
+++ G SSGT DI LG+ Q LF LTV E++
Sbjct: 47 FNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHA 106
Query: 150 -WFYSQLKQVPKDLAQLEISN-----MIGDLGIPHKRTSLANTLSGGMQRKLD 196
S L P+ + + ++ +G+ A LS G QR+L+
Sbjct: 107 RLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLE 159
Score = 35.2 bits (82), Expect = 0.072
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGK 341
+LDEP +G++P + EL+ ++ G T++L H M L DRI ++ G+
Sbjct: 172 LLDEPAAGLNPEETEELAELIREL----RDRGGVTILLIEHDMKLVMGLADRIVVLNYGE 227
Query: 342 L 342
+
Sbjct: 228 V 228
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 64.7 bits (158), Expect = 3e-11
Identities = 51/210 (24%), Positives = 91/210 (43%), Gaps = 16/210 (7%)
Query: 369 PQKSYIGYCPQFDALNDRLTPREHLEF-YSRVRNLPSVLLNTIVNESLNKFALGHYSDRE 427
P+K IGY Q L L+ R +L + R R + V E L +GH R
Sbjct: 72 PEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLG---IGHLLGRL 128
Query: 428 VRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC-VILT 486
LSGG K++++ ALL + L+ +DEP + +D + + +ER +E ++
Sbjct: 129 PGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYV 188
Query: 487 SHNMEECEALCTKLTIMVNGQFTCLGSATHLKS--------KYGQGYSVKVRCAEGRSAD 538
SH+++E L ++ ++ +G+ G + + + QG ++ AE
Sbjct: 189 SHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPWLAREDQGSLIEGVVAEHDQHY 248
Query: 539 AQTYLSLN---LPVADLVETHATQLQYRIS 565
T L L L V + + +L+ R+
Sbjct: 249 GLTALRLGGGHLWVPENLGPTGARLRLRVP 278
Score = 33.9 bits (78), Expect = 0.21
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 20/74 (27%)
Query: 282 ILDEPTSGVD--------PYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDR 333
++DEP + +D PY R E I + Y SHS + E L DR
Sbjct: 154 LMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHS------------LQEVLRLADR 201
Query: 334 IAIIAAGKLQCCGS 347
+ ++ G++ G
Sbjct: 202 VVVLEDGRVAAAGP 215
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 65.5 bits (160), Expect = 3e-11
Identities = 27/85 (31%), Positives = 49/85 (57%)
Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 484
++ RTLSGGN++K+ A L + L+ +DEPT G+D AR ++ I ++ V+
Sbjct: 398 EQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVL 457
Query: 485 LTSHNMEECEALCTKLTIMVNGQFT 509
S ++EE E + ++ +M G+ +
Sbjct: 458 FISSDLEEIEQMADRVLVMHQGEIS 482
Score = 38.9 bits (91), Expect = 0.007
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGK 341
I+DEPT GVD +R I++L+ + + V+ + ++E + + DR+ ++ G+
Sbjct: 426 IVDEPTRGVDVSARNDIYQLIRSI-----AAQNVAVLFISSDLEEIEQMADRVLVMHQGE 480
Query: 342 L 342
+
Sbjct: 481 I 481
Score = 37.3 bits (87), Expect = 0.024
Identities = 16/62 (25%), Positives = 36/62 (58%)
Query: 445 LLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMV 504
L+ ++ ++ LDEPT+ + P L++ I +++G ++ SH + E L ++++M
Sbjct: 155 LMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMR 214
Query: 505 NG 506
+G
Sbjct: 215 DG 216
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 62.4 bits (152), Expect = 4e-11
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 7/116 (6%)
Query: 373 YIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLS 432
Y+G+ P L L+ E+L F++ + + ++L L + D LS
Sbjct: 77 YLGHLP---GLKPELSALENLHFWAAIHGGAQ----RTIEDALAAVGLTGFEDLPAAQLS 129
Query: 433 GGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 488
G +R+L+ A L PL LDEPT+ +D L + ++ G V+LT+H
Sbjct: 130 AGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTH 185
Score = 33.1 bits (76), Expect = 0.22
Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 4/101 (3%)
Query: 101 LMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPK 160
L G+L SG + + R++ L +L+ E++ F++ +
Sbjct: 46 LAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHGG-- 103
Query: 161 DLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVW 201
AQ I + + +G+ A LS G QR+L ++W
Sbjct: 104 --AQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLW 142
Score = 30.8 bits (70), Expect = 1.3
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTH 322
ILDEPT+ +D + LL +H G V+LTTH
Sbjct: 150 ILDEPTTALDKAGVALLAGLL-----RAHLARGGIVLLTTH 185
>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug
resistance-like (PDR) subfamily G of ATP-binding
cassette transporters. The pleiotropic drug resistance
(PDR) is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 192
Score = 61.5 bits (150), Expect = 6e-11
Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 29/116 (25%)
Query: 373 YIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLS 432
GY Q D + LT RE L F S LL R LS
Sbjct: 80 STGYVEQQDVHSPNLTVREALRF--------SALL---------------------RGLS 110
Query: 433 GGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 488
+++L+ + L ++FLDEPTSG+D A + +++ G+ ++ T H
Sbjct: 111 VEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIH 166
Score = 33.0 bits (76), Expect = 0.28
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 279 STVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTH 322
S + LDEPTSG+D + +I L K+ + SG+ ++ T H
Sbjct: 128 SILFLDEPTSGLDSQAAYNIVRFLKKL-----ADSGQAILCTIH 166
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 62.3 bits (152), Expect = 7e-11
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGK 341
++DEP +DP +R + E ++ G+T++ TH +DEA L DRIAI+ G+
Sbjct: 158 LMDEPFGALDPITRDQLQEEFKRL----QQELGKTIVFVTHDIDEAFRLADRIAIMKNGE 213
Query: 342 LQCCGS 347
+ G+
Sbjct: 214 IVQVGT 219
Score = 52.3 bits (126), Expect = 1e-07
Identities = 29/98 (29%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 421 GHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE- 479
++DR LSGG ++++ A AL + PL+ +DEP +DP R L +R E
Sbjct: 126 AEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQEL 185
Query: 480 GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 517
G+ ++ +H+++E L ++ IM NG+ +G+ +
Sbjct: 186 GKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEI 223
Score = 36.1 bits (84), Expect = 0.036
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 15/121 (12%)
Query: 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIR-TDMTTIRRSLGVCPQYN 137
+GPSG G T ++ ++R ++ +SG I DIR D +RR +G Q
Sbjct: 33 IGPSGS--GKTTT-MKMINR-----LIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQI 84
Query: 138 ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLAN----TLSGGMQR 193
LF +TVEE++ +L + PK+ + ++ +G+ A+ LSGG Q+
Sbjct: 85 GLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPA--EFADRYPHELSGGQQQ 142
Query: 194 K 194
+
Sbjct: 143 R 143
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 62.1 bits (151), Expect = 8e-11
Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 1/150 (0%)
Query: 369 PQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREV 428
+ IG+ Q AL LT R+++ F +R P + V E L L DR
Sbjct: 69 ARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYP 128
Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV-ILTS 487
LSGG +++++ A AL ++ LDEP +D R+ L + + + E + +
Sbjct: 129 NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVT 188
Query: 488 HNMEECEALCTKLTIMVNGQFTCLGSATHL 517
H+ EE + ++ +M NG+ +GS +
Sbjct: 189 HDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218
Score = 39.8 bits (93), Expect = 0.002
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 9/117 (7%)
Query: 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNA 138
LGPSG G TL ++ G+ SG ++ D T + R +G Q+ A
Sbjct: 32 LGPSGS--GKSTL------LRIIAGLEQPDSGRIRLNGQDA-TRVHARDRKIGFVFQHYA 82
Query: 139 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKL 195
LF LTV +++ F ++++ PK + + ++ + + N LSGG ++++
Sbjct: 83 LFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRV 139
Score = 33.6 bits (77), Expect = 0.23
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
++LDEP +D R+ + L K++ H T + TH +EA + DRI +++ G
Sbjct: 152 LLLDEPFGALDAKVRKELRSWLRKLHDEVHV----TTVFVTHDQEEAMEVADRIVVMSNG 207
Query: 341 KLQCCGS 347
K++ GS
Sbjct: 208 KIEQIGS 214
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette
component of monosaccharide transport system. This
family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. Pentoses include xylose,
arabinose, and ribose. Important hexoses include
glucose, galactose, and fructose. In members of the
Carb_monos family, the single hydrophobic gene product
forms a homodimer while the ABC protein represents a
fusion of two nucleotide-binding domains. However, it is
assumed that two copies of the ABC domains are present
in the assembled transporter.
Length = 163
Score = 60.5 bits (148), Expect = 9e-11
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
LS G ++ + A AL N L+ LDEPT+ + P L+ I R ++G VI SH +
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL 142
Query: 491 EECEALCTKLTIMVNGQ 507
+E + ++T++ +G+
Sbjct: 143 DEVFEIADRVTVLRDGR 159
Score = 41.6 bits (99), Expect = 2e-04
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 9/64 (14%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSL--SGRTVILTTHYMDEADLLGDRIAIIA 338
+ILDEPT+ + P +++++ L G VI +H +DE + DR+ ++
Sbjct: 104 LILDEPTAALTPAEVERLFKVI-------RRLRAQGVAVIFISHRLDEVFEIADRVTVLR 156
Query: 339 AGKL 342
G++
Sbjct: 157 DGRV 160
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 62.2 bits (152), Expect = 9e-11
Identities = 42/143 (29%), Positives = 70/143 (48%), Gaps = 2/143 (1%)
Query: 374 IGYCPQFDALNDRLTPREHLEFYSRVRN-LPSVLLNTI-VNESLNKFALGHYSDREVRTL 431
IGY PQ ++ +LT +++ +R ++ L +F + H D + +L
Sbjct: 81 IGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSL 140
Query: 432 SGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 491
SGG +R++ A AL N I LDEP +G+DP A + I+ G V++T HN+
Sbjct: 141 SGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR 200
Query: 492 ECEALCTKLTIMVNGQFTCLGSA 514
E +C + I+ +G+ GS
Sbjct: 201 ETLDICDRAYIISDGKVLAEGSP 223
Score = 51.8 bits (125), Expect = 3e-07
Identities = 30/101 (29%), Positives = 57/101 (56%), Gaps = 6/101 (5%)
Query: 100 MLMGMLPVSSGTAKIYDHDIRTDMTTIRRS---LGVCPQYNALFDKLTVEEHMWFYSQLK 156
M++G++ SG + D DI T + +R+ +G PQ ++F KLTVE+++ +++
Sbjct: 49 MIVGLVRPDSGKILLDDEDI-TKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIR 107
Query: 157 QVPKDLAQ--LEISNMIGDLGIPHKRTSLANTLSGGMQRKL 195
+ A+ E+ ++ + I H R S A +LSGG +R++
Sbjct: 108 EKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRV 148
Score = 39.9 bits (94), Expect = 0.002
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRT--VILTTHYMDEADLLGDRIAIIA 338
++LDEP +GVDP + I ++ L R V++T H + E + DR II+
Sbjct: 161 ILLDEPFAGVDPIAVIDIQRII-------KHLKDRGIGVLITDHNVRETLDICDRAYIIS 213
Query: 339 AGKLQCCGSSV-FLKNSFARGYYL 361
GK+ GS + N R YL
Sbjct: 214 DGKVLAEGSPEEIVNNEDVRRVYL 237
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 63.9 bits (156), Expect = 1e-10
Identities = 46/153 (30%), Positives = 69/153 (45%), Gaps = 10/153 (6%)
Query: 375 GYCPQFDALNDRLTPREHLEFYSRVR---NLPSVLLNTIVNESLNKFALGHYSD------ 425
Y Q D LT REHL F + +R + V+E L L ++
Sbjct: 102 AYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVP 161
Query: 426 REVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL 485
V+ LSGG +++L+ A LL + PL+F DEPTSG+D + ++ +G+ +I
Sbjct: 162 GRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIIC 221
Query: 486 TSHN-MEECEALCTKLTIMVNGQFTCLGSATHL 517
T H E L K+ +M G+ LGS
Sbjct: 222 TIHQPSSELFELFDKIILMAEGRVAYLGSPDQA 254
Score = 36.9 bits (86), Expect = 0.032
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTH 322
DEPTSG+D + S+ ++L + + G+T+I T H
Sbjct: 189 FCDEPTSGLDSFMAYSVVQVLKGL-----AQKGKTIICTIH 224
Score = 33.1 bits (76), Expect = 0.50
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 17/74 (22%)
Query: 135 QYNALFDKLTVEEHMWFYSQLK---QVPKDLAQLEISNMIGDLGIPHKRTSLANT----- 186
Q + LTV EH+ F + L+ +V K + + ++ LG+ ANT
Sbjct: 106 QDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGL----RKCANTRIGVP 161
Query: 187 -----LSGGMQRKL 195
LSGG +++L
Sbjct: 162 GRVKGLSGGERKRL 175
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 62.4 bits (152), Expect = 2e-10
Identities = 47/207 (22%), Positives = 84/207 (40%), Gaps = 16/207 (7%)
Query: 366 KSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVR--NLPSVLLNTIVNESLNKFALGHY 423
A + +G+ Q AL +T +++ F +VR + V E L L
Sbjct: 71 NLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGL 130
Query: 424 SDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGAR----RFLWTCIERAVSE 479
+DR LSGG +++++ A AL ++ LDEP +D R R+L +R
Sbjct: 131 ADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDR---L 187
Query: 480 GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSA----THLKSKYGQGYSVKVRCAEGR 535
G + +H+ EE L ++ ++ G+ +G H S++ + +V G
Sbjct: 188 GVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASRFVARFLGEVNVLPGE 247
Query: 536 SADAQTYLS---LNLPVADLVETHATQ 559
Q + + LP+ L + A
Sbjct: 248 VILGQLQVGAHDIGLPLQPLPDGKADL 274
Score = 37.7 bits (88), Expect = 0.012
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 283 LDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKL 342
LDEP +D R+ + L K+ H G T + TH +EA L DR+ ++ G++
Sbjct: 161 LDEPFGALDAKVRKELRRWLRKL----HDRLGVTTVFVTHDQEEALELADRVVVLNQGRI 216
Query: 343 QCCGS 347
+ G
Sbjct: 217 EQVGP 221
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 61.9 bits (151), Expect = 2e-10
Identities = 40/155 (25%), Positives = 73/155 (47%), Gaps = 1/155 (0%)
Query: 368 APQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDRE 427
P+K I Q AL +T E++ F ++R +P ++ V E L H +R+
Sbjct: 71 PPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRK 130
Query: 428 VRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAV-SEGRCVILT 486
LSGG +++++ A AL+ + LDEP S +D R + + I++ G I
Sbjct: 131 PLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYV 190
Query: 487 SHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKY 521
+H+ E L ++ +M +G+ +G+ L +
Sbjct: 191 THDQVEAMTLADRIVVMNDGRIQQVGTPLELYERP 225
Score = 53.8 bits (130), Expect = 1e-07
Identities = 40/120 (33%), Positives = 57/120 (47%), Gaps = 18/120 (15%)
Query: 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNA 138
LGPSG G TL L M+ G+ +SG I D+ TD+ +R + + Q A
Sbjct: 35 LGPSGC--GKSTL-LR-----MIAGLEEPTSGEILIDGRDV-TDLPPEKRGIAMVFQNYA 85
Query: 139 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGD----LGIPHKRTSLANTLSGG-MQR 193
L+ +TV E++ F +L+ VPK EI + + LG+ H LSGG QR
Sbjct: 86 LYPHMTVYENIAFGLKLRGVPKA----EIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQR 141
Score = 50.0 bits (120), Expect = 2e-06
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 283 LDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKL 342
LDEP S +D R + + K+ H G T I TH EA L DRI ++ G++
Sbjct: 157 LDEPLSNLDAKLRVLMRSEIKKL----HERLGTTTIYVTHDQVEAMTLADRIVVMNDGRI 212
Query: 343 QCCGS 347
Q G+
Sbjct: 213 QQVGT 217
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 59.9 bits (145), Expect = 3e-10
Identities = 29/115 (25%), Positives = 60/115 (52%), Gaps = 5/115 (4%)
Query: 403 PSVLLNTIVNESLNKFA----LGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPT 458
P + LN E + A + Y DR LSGG +++++ A L+ P++ LDEP
Sbjct: 97 PGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPF 156
Query: 459 SGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLG 512
S +DP R + +++ SE R +++ +H++ + A+ +++ ++ G+ +
Sbjct: 157 SALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVS 211
Score = 37.9 bits (88), Expect = 0.006
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 269 VLFAMSFV-PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEA 327
V A V P ++LDEP S +DP R + L+ + S RT+++ TH++ +A
Sbjct: 137 VALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQ----LCSERQRTLLMVTHHLSDA 192
Query: 328 DLLGDRIAIIAAGKL 342
+ +IA+++ GK+
Sbjct: 193 RAIASQIAVVSQGKI 207
Score = 29.4 bits (66), Expect = 4.5
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 9/117 (7%)
Query: 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNA 138
+GPSG G TL +++ G + +SG+ K+ D T + +R + + Q N
Sbjct: 30 MGPSGA--GKSTL------LNLIAGFIEPASGSIKVNDQSH-TGLAPYQRPVSMLFQENN 80
Query: 139 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKL 195
LF LTV +++ Q ++ + +GI L LSGG ++++
Sbjct: 81 LFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRV 137
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 60.1 bits (147), Expect = 3e-10
Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 3/135 (2%)
Query: 374 IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKF-ALGHYSDREVRTLS 432
IGY P+ + LT E+L + R + F L + TLS
Sbjct: 77 IGYVPEGRRIFPELTVEENLLLGAYARRRAKR--KARLERVYELFPRLKERRKQLAGTLS 134
Query: 433 GGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEE 492
GG ++ L+ A AL+ L+ LDEP+ G+ P ++ I EG ++L N
Sbjct: 135 GGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARF 194
Query: 493 CEALCTKLTIMVNGQ 507
+ + ++ G+
Sbjct: 195 ALEIADRAYVLERGR 209
Score = 44.3 bits (106), Expect = 5e-05
Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 11/101 (10%)
Query: 101 LMGMLPVSSGTAKIYDHDIRTDMTT---IRRSLGVCPQYNALFDKLTVEE--HMWFYSQL 155
+MG+LP SG+ + DI T + R +G P+ +F +LTVEE + Y++
Sbjct: 46 IMGLLPPRSGSIRFDGRDI-TGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR 104
Query: 156 KQVPKDLAQLE-ISNMIGDLGIPHKRTSLANTLSGGMQRKL 195
+ K A+LE + + L +R LA TLSGG Q+ L
Sbjct: 105 RAKRK--ARLERVYELFPRLK--ERRKQLAGTLSGGEQQML 141
Score = 34.3 bits (80), Expect = 0.11
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
++LDEP+ G+ P I+E + ++ G T++L A + DR ++ G
Sbjct: 154 LLLDEPSEGLAPKIVEEIFEAIREL-----RDEGVTILLVEQNARFALEIADRAYVLERG 208
Query: 341 K 341
+
Sbjct: 209 R 209
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 60.5 bits (147), Expect = 4e-10
Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 1/126 (0%)
Query: 379 QFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRK 438
Q +AL L +++ F ++R + I ++ L L + + LSGG +++
Sbjct: 81 QNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQR 140
Query: 439 LSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTC-IERAVSEGRCVILTSHNMEECEALC 497
+ A AL L+ LDEP +D R + ++ G+ V+L +H++EE L
Sbjct: 141 VGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLA 200
Query: 498 TKLTIM 503
T+L ++
Sbjct: 201 TRLVVL 206
Score = 45.9 bits (109), Expect = 2e-05
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
+LDEP +D +R + ELL+ ++ +G+ V+L TH ++EA L R+ +++ G
Sbjct: 155 LLDEPFGALDALTREQMQELLLDLW----QETGKQVLLITHDIEEALFLATRLVVLSPG 209
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 60.3 bits (147), Expect = 4e-10
Identities = 48/183 (26%), Positives = 75/183 (40%), Gaps = 11/183 (6%)
Query: 331 GDRIAIIAA-GKLQCCGSSVFLK-----NSFARGYYLSLDMKSAPQKSYIGYCPQFDALN 384
G+ +AI+ G CG S L+ G L IGY Q DAL
Sbjct: 29 GEFVAILGPSG----CGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALL 84
Query: 385 DRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIA 444
LT +++ +R E L L + D+ LSGG +++++ A A
Sbjct: 85 PWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARA 144
Query: 445 LLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC-VILTSHNMEECEALCTKLTIM 503
L L+ LDEP +D R L + R E R V+L +H+++E L ++ ++
Sbjct: 145 LATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVL 204
Query: 504 VNG 506
N
Sbjct: 205 SNR 207
Score = 46.4 bits (111), Expect = 1e-05
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 283 LDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
LDEP +D +R + + L+++ + +TV+L TH +DEA L DR+ +++
Sbjct: 154 LDEPFGALDALTREELQDELLRL----WEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207
Score = 36.8 bits (86), Expect = 0.020
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 13/116 (11%)
Query: 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNA 138
LGPSG G TL L ++ G+ +SG + + T +G Q +A
Sbjct: 35 LGPSGC--GKSTL-L-----RLIAGLEKPTSGEVLLDGRPV----TGPGPDIGYVFQEDA 82
Query: 139 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGM-QR 193
L LTV +++ +L+ K A+ ++ +G+ + LSGGM QR
Sbjct: 83 LLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQR 138
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 59.0 bits (144), Expect = 5e-10
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 6/116 (5%)
Query: 373 YIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLS 432
Y+G+ P + LT E+L FY R+ + + E+L + L + D VR LS
Sbjct: 78 YLGHQP---GIKTELTALENLRFYQRLHGPGD---DEALWEALAQVGLAGFEDVPVRQLS 131
Query: 433 GGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 488
G +R+++ A L PL LDEP + +D L + + +G VILT+H
Sbjct: 132 AGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTH 187
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 58.4 bits (142), Expect = 1e-09
Identities = 31/132 (23%), Positives = 64/132 (48%), Gaps = 1/132 (0%)
Query: 382 ALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLST 441
AL +T +++ F ++R +P ++ V E + H DR+ + LSGG +++++
Sbjct: 82 ALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVAL 141
Query: 442 AIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKL 500
A++ + +DEP S +D R + ++R G I +H+ E + ++
Sbjct: 142 GRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRI 201
Query: 501 TIMVNGQFTCLG 512
+M +GQ +G
Sbjct: 202 AVMNDGQIQQIG 213
Score = 44.2 bits (105), Expect = 6e-05
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGK 341
++DEP S +D R + L ++ G T I TH EA + DRIA++ G+
Sbjct: 153 LMDEPLSNLDAKLRVQMRAELKRL----QQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQ 208
Query: 342 LQ 343
+Q
Sbjct: 209 IQ 210
Score = 34.2 bits (79), Expect = 0.12
Identities = 38/120 (31%), Positives = 55/120 (45%), Gaps = 18/120 (15%)
Query: 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNA 138
LGPSG G T M+ G+ +SG I D+ TD+ R + + Q A
Sbjct: 32 LGPSGC--GKTTT------LRMIAGLEEPTSGRIYIGGRDV-TDLPPKDRDIAMVFQNYA 82
Query: 139 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGD----LGIPHKRTSLANTLSGG-MQR 193
L+ +TV +++ F +L++VPKD EI + + L I H LSGG QR
Sbjct: 83 LYPHMTVYDNIAFGLKLRKVPKD----EIDERVREVAELLQIEHLLDRKPKQLSGGQRQR 138
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 58.3 bits (142), Expect = 1e-09
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 373 YIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLS 432
+IG+ Q L LT E++E + +P E L + LG + LS
Sbjct: 83 HIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELS 142
Query: 433 GGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIER-AVSEGRCVILTSHNME 491
GG +++++ A AL + +I DEPT +D + + + G +++ +H+ E
Sbjct: 143 GGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE 202
Score = 47.9 bits (115), Expect = 4e-06
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
++ DEPT +D + + + ELL ++ + +G T+++ TH + A+ DRI + G
Sbjct: 162 ILADEPTGNLDSETGKEVMELLREL----NKEAGTTIVVVTHDPELAE-YADRIIELRDG 216
Query: 341 KL 342
K+
Sbjct: 217 KI 218
Score = 47.9 bits (115), Expect = 4e-06
Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 19/122 (15%)
Query: 79 LGPSGI---TLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDI----RTDMTTIRR-SL 130
+GPSG TL L+ LG G+ +SG ++ DI ++ RR +
Sbjct: 36 VGPSGSGKSTL-LNILG----------GLDRPTSGEVRVDGTDISKLSEKELAAFRRRHI 84
Query: 131 GVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGG 190
G Q L LT E++ L VPK + ++ +G+ + + LSGG
Sbjct: 85 GFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGG 144
Query: 191 MQ 192
Q
Sbjct: 145 QQ 146
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 58.9 bits (143), Expect = 1e-09
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Query: 410 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGAR-RF 468
L H +DR +LS G +R++ A AL+ + L+ LDEP G+D AR +
Sbjct: 151 AAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQL 210
Query: 469 LWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNG 506
L E A S ++ +H+ EE T ++ G
Sbjct: 211 LNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEG 249
Score = 41.1 bits (97), Expect = 8e-04
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 269 VLFAMSFVPASTV-ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEA 327
VL A + V + ILDEP G+D +R + L ++ + S ++ TH+ +E
Sbjct: 180 VLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEEL---AASPGAPALLFVTHHAEEI 236
Query: 328 DLLGDRIAIIAAGKLQ 343
++ G++
Sbjct: 237 PPCFTHRLLLKEGEVV 252
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 59.3 bits (143), Expect = 1e-09
Identities = 31/103 (30%), Positives = 58/103 (56%)
Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW 470
V+E+L H+ + ++ LS G K++++ A AL+ + LDEPT+G+DP R +
Sbjct: 117 VDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMI 176
Query: 471 TCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 513
I R V++G VI++SH+++ + + ++ GQ G+
Sbjct: 177 AIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGA 219
Score = 33.4 bits (76), Expect = 0.30
Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAII 337
A ++LDEPT+G+DP R + ++ ++ G VI+++H +D + D + ++
Sbjct: 155 ARYLLLDEPTAGLDPAGRTQMIAIIRRI-----VAQGNHVIISSHDIDLIYEISDAVYVL 209
Query: 338 AAGKLQCCGS 347
G++ G+
Sbjct: 210 RQGQILTHGA 219
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 60.0 bits (146), Expect = 2e-09
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 4/80 (5%)
Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDP-GARRFLWTCIERAVSEGRCVILTS 487
R LSGG +R+L+ A ALL + PL LDEPT G+DP R+ L E A EG+ +++ +
Sbjct: 473 RRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA--EGKTLLMVT 530
Query: 488 HNMEECEALCTKLTIMVNGQ 507
H + E ++ ++ NG+
Sbjct: 531 HRLRGLER-MDRIIVLDNGK 549
Score = 45.0 bits (107), Expect = 1e-04
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Query: 278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAII 337
A +LDEPT G+DP + R + LL + G+T+++ TH + + + DRI ++
Sbjct: 493 APLWLLDEPTEGLDPITERQVLALLFEH------AEGKTLLMVTHRLRGLERM-DRIIVL 545
Query: 338 AAGKL 342
GK+
Sbjct: 546 DNGKI 550
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE.
Length = 201
Score = 57.5 bits (139), Expect = 2e-09
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 9/116 (7%)
Query: 373 YIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLS 432
Y+G+ P + L+ E+L F+ + V E+L + L + DR V LS
Sbjct: 77 YLGHAP---GIKTTLSVLENLRFWHADHSDEQVE------EALARVGLNGFEDRPVAQLS 127
Query: 433 GGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 488
G +R+++ A LL PL LDEPT+ +D + + G V+LT+H
Sbjct: 128 AGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTH 183
Score = 32.9 bits (75), Expect = 0.29
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTH 322
ILDEPT+ +D E + A H G V+LTTH
Sbjct: 148 ILDEPTTALDKAGVARFAEAM-----AGHCARGGMVVLTTH 183
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 60.2 bits (146), Expect = 2e-09
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 422 HYSDREVRTLSGGNKRKLSTAIAL--------LGNTPLIFLDEPTSGMDPGARRFLWTCI 473
R ++TLSGG + S A+ L L+FLDEP +D L +
Sbjct: 807 GGEVRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEIL 866
Query: 474 ERAVSEGRCVILTSHNMEE 492
E +S+GR +I+ SH +EE
Sbjct: 867 EELLSDGRQIIIISH-VEE 884
Score = 31.3 bits (71), Expect = 2.0
Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 262 SILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTT 321
++ +A++ L + LDEP +D + E+L + GR +I+ +
Sbjct: 827 ALRLALSDLLQGRA-RLELLFLDEPFGTLDEERLEKLAEILEE-----LLSDGRQIIIIS 880
Query: 322 H 322
H
Sbjct: 881 H 881
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 58.9 bits (142), Expect = 3e-09
Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 2/151 (1%)
Query: 369 PQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREV 428
P K + Q AL L +++ F R + +P + V ++L LG +
Sbjct: 76 PHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP 135
Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE--GRCVILT 486
LSGG +++++ A A+ ++ LDEP S +D R + I E ++
Sbjct: 136 AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCV 195
Query: 487 SHNMEECEALCTKLTIMVNGQFTCLGSATHL 517
+H+ ++ L K IM +G+ G L
Sbjct: 196 THDQDDALTLADKAGIMKDGRLAAHGEPQAL 226
Score = 40.7 bits (95), Expect = 0.002
Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 13/133 (9%)
Query: 69 ISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD 122
+ D SLE + +G SG G TL L ++ + L +G I D D+ T
Sbjct: 21 LDDLSLEIEAGELLALIGKSGC--GKTTL-LRAIAGFVKAAGL---TGRIAIADRDL-TH 73
Query: 123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTS 182
+R L + Q ALF L VE+++ F + +++PK +++ + +G+
Sbjct: 74 APPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAH 133
Query: 183 LANTLSGGMQRKL 195
L LSGGMQ+++
Sbjct: 134 LPAQLSGGMQQRI 146
Score = 38.1 bits (88), Expect = 0.012
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
++LDEP S +D R ++ E + ++ L T++ TH D+A L D+ I+ G
Sbjct: 159 LLLDEPLSALDANIRANMREEIAALH---EELPELTILCVTHDQDDALTLADKAGIMKDG 215
Query: 341 KLQCCGSSVFLKNSFARGY 359
+L G L ++ A G+
Sbjct: 216 RLAAHGEPQALYDAPADGF 234
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 58.3 bits (141), Expect = 3e-09
Identities = 30/122 (24%), Positives = 59/122 (48%), Gaps = 15/122 (12%)
Query: 244 MNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLI 303
M+ + QM+ ++K +A+ + AM+ ++LDEPT+G+DP S+R + LL
Sbjct: 139 MSQSPFQMSGGQMRK------IAIVSILAMN---PDIIVLDEPTAGLDPQSKRQVMRLLK 189
Query: 304 KVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKL--QCCGSSVFLKNSFARGYYL 361
+ + +T+IL +H M+E D + ++ G + Q +F +++
Sbjct: 190 SL----QTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKKKLADWHI 245
Query: 362 SL 363
L
Sbjct: 246 GL 247
Score = 55.2 bits (133), Expect = 3e-08
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIER-AVSEGRCVILTSHN 489
+SGG RK++ L N +I LDEPT+G+DP ++R + ++ E + +IL SH+
Sbjct: 146 MSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHD 205
Query: 490 MEECEALCTKLTIMVNGQ 507
M E ++ +M G
Sbjct: 206 MNEVARYADEVIVMKEGS 223
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 58.3 bits (141), Expect = 3e-09
Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW 470
V+ +L+ L DR LSGG K++++ A + ++ LDEPT+G+DP + L
Sbjct: 118 VSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELI 177
Query: 471 TCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 513
+ G VI ++H ++ + + +M G+ G+
Sbjct: 178 DFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGT 221
Score = 41.7 bits (98), Expect = 7e-04
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 17/111 (15%)
Query: 265 VAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWEL---LIKVYYASHSLSGRTVILTT 321
VA+ + AM ++LDEPT+G+DP + + + L + Y G TVI +T
Sbjct: 146 VAIAGVIAME---PQVLVLDEPTAGLDPQGVKELIDFLNDLPETY-------GMTVIFST 195
Query: 322 HYMDEADLLGDRIAIIAAGKLQCCGS--SVFLKNSFARGYYLSLDMKSAPQ 370
H +D + D I ++ G++ G+ +FL+ + LD+ S P+
Sbjct: 196 HQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPDLLAR--VHLDLPSLPK 244
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 57.1 bits (139), Expect = 3e-09
Identities = 34/157 (21%), Positives = 63/157 (40%), Gaps = 4/157 (2%)
Query: 337 IAAGKLQCCGSSVFLKNSFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLEFY 396
+ G + V + LS + ++ IG+ Q L LT E++E
Sbjct: 50 LLGGLDKPTSGEVLINGK--DLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELP 107
Query: 397 SRVRNLPSVLLNTIVNESLNKFALGHYSDRE-VRTLSGGNKRKLSTAIALLGNTPLIFLD 455
+ + E L L ++ LSGG +++++ A AL+ N +I D
Sbjct: 108 LLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILAD 167
Query: 456 EPTSGMDPGARRFLWTCI-ERAVSEGRCVILTSHNME 491
EPT +D + + + E G+ +I+ +H+ E
Sbjct: 168 EPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE 204
Score = 40.2 bits (95), Expect = 0.001
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
++ DEPT +D + + + ELL ++ + G+T+I+ TH + A DR+ + G
Sbjct: 164 ILADEPTGNLDSKTAKEVLELLREL----NKERGKTIIMVTHDPELAK-YADRVIELKDG 218
Query: 341 KLQ 343
K++
Sbjct: 219 KIE 221
>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 58.3 bits (141), Expect = 3e-09
Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
Query: 415 LNKFALGH-YSDREVRTLSGGNKRKLSTA-IALLGNTPLIFLDEPTSGMDPGARRFLWTC 472
LNK L Y +R LSGG KR+++ A I + LIF DEPT+G+DP +
Sbjct: 160 LNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIF-DEPTAGLDPKGEHEMMQL 218
Query: 473 IERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 513
I A + + V + +H ME + ++ +M G+ G+
Sbjct: 219 ILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGT 259
Score = 46.0 bits (109), Expect = 3e-05
Identities = 26/135 (19%), Positives = 50/135 (37%), Gaps = 15/135 (11%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
+I DEPT+G+DP + +L++ + +TV + TH M+ + D + ++ G
Sbjct: 198 LIFDEPTAGLDPKGEHEMMQLILDA-----KANNKTVFVITHTMEHVLEVADEVIVMDKG 252
Query: 341 KLQCCGS--SVFLKNSFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSR 398
K+ G+ +F + + I P++ L PR
Sbjct: 253 KILKTGTPYEIFTDQHIINSTSIQVPRVIQVINDLIKKDPKYKKLYQ-KQPRT------- 304
Query: 399 VRNLPSVLLNTIVNE 413
+ L + I
Sbjct: 305 IEQLADAINEFIKGG 319
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 57.9 bits (140), Expect = 5e-09
Identities = 38/147 (25%), Positives = 72/147 (48%), Gaps = 1/147 (0%)
Query: 368 APQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDRE 427
P +I Q AL +T E++ F ++R +P + V E+L L ++DR+
Sbjct: 38 PPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRK 97
Query: 428 VRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILT 486
LSGG +++++ A AL+ ++ LDEP S +D R + ++ + G +
Sbjct: 98 PHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFV 157
Query: 487 SHNMEECEALCTKLTIMVNGQFTCLGS 513
+H+ EE + ++ IM G+ +G+
Sbjct: 158 THDQEEAMTMSDRIAIMRKGKIAQIGT 184
Score = 37.1 bits (86), Expect = 0.022
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
++LDEP S +D R +L +K G T + TH +EA + DRIAI+ G
Sbjct: 122 LLLDEPLSALD-KKLRDQMQLELK---TIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKG 177
Query: 341 KLQCCGSS 348
K+ G+
Sbjct: 178 KIAQIGTP 185
Score = 35.2 bits (81), Expect = 0.077
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 9/117 (7%)
Query: 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNA 138
LGPSG G TL +L G SG+ + D+ T++ R + + Q A
Sbjct: 2 LGPSGC--GKTTL------LRLLAGFEQPDSGSIMLDGEDV-TNVPPHLRHINMVFQSYA 52
Query: 139 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKL 195
LF +TVEE++ F ++++VP+ + + + + + + LSGG Q+++
Sbjct: 53 LFPHMTVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRV 109
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 56.0 bits (135), Expect = 7e-09
Identities = 39/158 (24%), Positives = 70/158 (44%), Gaps = 7/158 (4%)
Query: 367 SAPQKSYIGYCPQFDALN-DRLTPREHLEFYSRVRNL-----PSVLLNTIVNESLNKFAL 420
+IGY PQ D H R ++ P V V ++L + L
Sbjct: 44 PGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGL 103
Query: 421 GHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEG 480
+DR V LSGG ++++ A AL ++ LDEP +G+D + L G
Sbjct: 104 TELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAG 163
Query: 481 RCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 518
+++T+H++ + A C ++ +++NG+ G+ L+
Sbjct: 164 TAILMTTHDLAQAMATCDRV-VLLNGRVIADGTPQQLQ 200
Score = 34.1 bits (78), Expect = 0.15
Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 269 VLFAMSFVPASTVIL-DEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEA 327
VL A + +V+L DEP +G+D ++ + EL I++ + +G +++TTH + +A
Sbjct: 122 VLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIEL-----AGAGTAILMTTHDLAQA 176
Query: 328 DLLGDRIAII 337
DR+ ++
Sbjct: 177 MATCDRVVLL 186
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 57.6 bits (140), Expect = 9e-09
Identities = 59/212 (27%), Positives = 82/212 (38%), Gaps = 38/212 (17%)
Query: 309 SHSLSGRTVI----LTTHYMDEADLL---------GDRIAIIA---AGKLQCCGSSVFLK 352
G+ V+ ++ Y LL GDRIAI+ AGK S LK
Sbjct: 313 PGKRLGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGK------STLLK 366
Query: 353 NSFARGYYLSLDMKSAPQKSYIGYCPQ-FDALNDRLTPREHLEFYSRVRNLPSVLLNTIV 411
LS +K IGY Q D L+ T E L V
Sbjct: 367 LLAGELGPLSGTVKVGETVK-IGYFDQHRDELDPDKTVLEEL------SEGFPDGDEQEV 419
Query: 412 NESLNKFAL-GHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW 470
L +F G ++ V LSGG K +L A LL L+ LDEPT+ +D + L
Sbjct: 420 RAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEAL- 478
Query: 471 TCIERAVSE--GRCVILTSHNMEECEALCTKL 500
E A+ + G V+L SH+ + + T++
Sbjct: 479 ---EEALLDFEG-TVLLVSHDRYFLDRVATRI 506
Score = 49.6 bits (119), Expect = 3e-06
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC-V 483
DR V +LSGG +R+++ A ALL L+ LDEPT+ +D + +L E + V
Sbjct: 148 DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWL----EDYLKRYPGTV 203
Query: 484 ILTSHNMEECEALCTK 499
I+ SH+ + + T
Sbjct: 204 IVVSHDRYFLDNVATH 219
Score = 32.2 bits (74), Expect = 0.92
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 9/55 (16%)
Query: 269 VLFAMSFV-PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTH 322
+L A + P + ++LDEPT+ +D S ++ E L+ + TV+L +H
Sbjct: 448 LLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLD--FEG------TVLLVSH 494
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 57.0 bits (138), Expect = 1e-08
Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 7/148 (4%)
Query: 368 APQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDRE 427
P+K IGY Q DA RL P H +R + ++ + + H DR
Sbjct: 72 PPEKRRIGYVFQ-DA---RLFP--HYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRY 125
Query: 428 VRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL-T 486
TLSGG K++++ ALL L+ +DEP + +D +R + +ER E IL
Sbjct: 126 PGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYV 185
Query: 487 SHNMEECEALCTKLTIMVNGQFTCLGSA 514
SH+++E L ++ ++ NG+ G
Sbjct: 186 SHSLDEVLRLADRVVVLENGKVKASGPL 213
Score = 29.6 bits (67), Expect = 5.1
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 20/73 (27%)
Query: 282 ILDEPTSGVD--------PYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDR 333
++DEP + +D PY R E+ I + Y SH +DE L DR
Sbjct: 151 LMDEPLASLDLPRKREILPYLERLRDEINIPILYVSH------------SLDEVLRLADR 198
Query: 334 IAIIAAGKLQCCG 346
+ ++ GK++ G
Sbjct: 199 VVVLENGKVKASG 211
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 55.6 bits (135), Expect = 1e-08
Identities = 31/142 (21%), Positives = 58/142 (40%), Gaps = 6/142 (4%)
Query: 372 SYIGYCPQ--FDALNDRLTPREHLE--FYSRVRNLPSVLLNTIVNESLNKFALG-HYSDR 426
I Q +LN R+T E + + V L L +R
Sbjct: 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNR 141
Query: 427 EVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVIL 485
LSGG +++++ A AL N L+ DEPTS +D + + +++ E G ++
Sbjct: 142 YPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLF 201
Query: 486 TSHNMEECEALCTKLTIMVNGQ 507
+H++ + ++ +M G+
Sbjct: 202 ITHDLGVVAKIADRVAVMYAGK 223
Score = 46.0 bits (110), Expect = 2e-05
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
+I DEPTS +D + I +LL K+ G T++ TH + + DR+A++ AG
Sbjct: 167 LIADEPTSALDVSVQAQILDLLKKL----QEELGLTLLFITHDLGVVAKIADRVAVMYAG 222
Query: 341 KL 342
K+
Sbjct: 223 KI 224
Score = 34.8 bits (81), Expect = 0.073
Identities = 21/103 (20%), Positives = 45/103 (43%), Gaps = 10/103 (9%)
Query: 101 LMGMLPVSSGTAKIYDHDI----RTDMTTIRRSLGVCPQ--YNALFDKLTVEEHMW--FY 152
++G+L +SG+ D+ R R+ + + Q ++L ++T+ E +
Sbjct: 51 ILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLR 110
Query: 153 SQLKQVPKDLAQLEISNMIGDLGIPHKR-TSLANTLSGGM-QR 193
K K+ + + ++ +G+P + + LSGG QR
Sbjct: 111 IHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQR 153
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 57.5 bits (140), Expect = 1e-08
Identities = 35/105 (33%), Positives = 58/105 (55%), Gaps = 8/105 (7%)
Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 488
R LSGG +R+L A ALL + PL+ LDEPT G+D R + + ++ + V++ +H
Sbjct: 474 RQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELL-AEHAQNKTVLMITH 532
Query: 489 N---MEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVR 530
+E+ + +C +M NGQ G+ L ++ G+ Y +K R
Sbjct: 533 RLTGLEQFDRIC----VMDNGQIIEQGTHQELLAQQGRYYQLKQR 573
Score = 42.1 bits (100), Expect = 7e-04
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 17/91 (18%)
Query: 277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLG----D 332
A ++LDEPT G+D + R I ELL + +TV++ TH L G D
Sbjct: 493 DAPLLLLDEPTEGLDAETERQILELLAEH------AQNKTVLMITH-----RLTGLEQFD 541
Query: 333 RIAIIAAGKLQCCGSSVFLKNSFARGYYLSL 363
RI ++ G++ G+ L +G Y L
Sbjct: 542 RICVMDNGQIIEQGTHQELLA--QQGRYYQL 570
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 55.7 bits (134), Expect = 2e-08
Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 9/127 (7%)
Query: 407 LNTIVNESLNKFAL----GHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
L+ IV ESL K AL ++ LSGG +++L A AL +I LDEPTS +D
Sbjct: 119 LDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALD 178
Query: 463 PGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL----K 518
P A + + +E +SE +++ +HN+ + + + M G+ G + K
Sbjct: 179 PIATQRIEKLLEE-LSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVERPK 237
Query: 519 SKYGQGY 525
+K + Y
Sbjct: 238 NKLTEEY 244
Score = 37.2 bits (86), Expect = 0.018
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 8/63 (12%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGR-TVILTTHYMDEADLLGDRIAIIAA 339
++LDEPTS +DP + + I +LL + LS T+++ TH + +A + D IA +
Sbjct: 168 ILLDEPTSALDPIATQRIEKLLEE-------LSENYTIVIVTHNIGQAIRIADYIAFMYR 220
Query: 340 GKL 342
G+L
Sbjct: 221 GEL 223
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 55.4 bits (134), Expect = 2e-08
Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 411 VNESLNKFALGH--YSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRF 468
V ++N L + Y D+ LSGG KR+++ A + ++ LDEPT+G+DP R
Sbjct: 123 VKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDE 182
Query: 469 LWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 513
+ I+ E +IL SH+ME+ L ++ +M G+ G+
Sbjct: 183 ILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGT 228
Score = 52.7 bits (127), Expect = 2e-07
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 9/88 (10%)
Query: 265 VAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYM 324
VA+ + AM +ILDEPT+G+DP R I + ++ H T+IL +H M
Sbjct: 153 VAIAGVVAME---PKILILDEPTAGLDPKGRDEILNKIKEL----HKEYNMTIILVSHSM 205
Query: 325 DEADLLGDRIAIIAAGKLQCCG--SSVF 350
++ L DRI ++ GK + G VF
Sbjct: 206 EDVAKLADRIIVMNKGKCELQGTPREVF 233
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 55.4 bits (133), Expect = 2e-08
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 5/94 (5%)
Query: 423 YSDREVRTLSGGNKRKLSTA--IALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE- 479
Y R LSGG KR+++ A IA+ GNT + LDEPT G+DP ER E
Sbjct: 143 YVKRSPFELSGGQKRRVALAGIIAMDGNT--LVLDEPTGGLDPKGEEDFINLFERLNKEY 200
Query: 480 GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 513
+ +I+ +HNM++ + ++ +M G+ +GS
Sbjct: 201 KKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234
Score = 44.2 bits (104), Expect = 1e-04
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 265 VAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYM 324
VA+ + AM +T++LDEPT G+DP L ++ + + +I+ TH M
Sbjct: 159 VALAGIIAMD---GNTLVLDEPTGGLDPKGEEDFINLFERL----NKEYKKRIIMVTHNM 211
Query: 325 DEADLLGDRIAIIAAGKLQCCGS 347
D+ + D + ++ GK+ GS
Sbjct: 212 DQVLRIADEVIVMHEGKVISIGS 234
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 53.5 bits (130), Expect = 3e-08
Identities = 22/61 (36%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
LSGG +++++ A ALL + P++ LDE TS +DP + + RA+++G+ VI+ +H +
Sbjct: 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEAL-RALAKGKTVIVIAHRL 155
Query: 491 E 491
Sbjct: 156 S 156
Score = 44.7 bits (107), Expect = 3e-05
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAII 337
+ILDE TS +DP + I E L + G+TVI+ H + DRI ++
Sbjct: 115 PPILILDEATSALDPETEALILEALRAL------AKGKTVIVIAHRLSTIR-DADRIIVL 167
Query: 338 AAGK 341
G+
Sbjct: 168 DDGR 171
Score = 36.6 bits (86), Expect = 0.015
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 99 SMLMGMLPVSSGTAKIYDHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEE 147
+L+ + +SG I D+R D+ ++R+++ PQ LF T+ E
Sbjct: 46 KLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSG-TIRE 94
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 55.0 bits (133), Expect = 3e-08
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 265 VAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYM 324
VA+ + AM ++LDEPT+G+DP R+ + E+ +Y H G T +L TH M
Sbjct: 154 VAIAGVLAME---PEVLVLDEPTAGLDPKGRKEMMEM----FYKLHKEKGLTTVLVTHSM 206
Query: 325 DEADLLGDRIAIIAAGKLQCCGS 347
++A D+I ++ G + G+
Sbjct: 207 EDAARYADQIVVMHKGTVFLQGT 229
Score = 48.1 bits (115), Expect = 6e-06
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHN 489
LSGG R+++ A L ++ LDEPT+G+DP R+ + + E G +L +H+
Sbjct: 146 LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHS 205
Query: 490 MEECEALCTKLTIMVNGQFTCLGSATHLKSK 520
ME+ ++ +M G G+ + +
Sbjct: 206 MEDAARYADQIVVMHKGTVFLQGTPREIFAD 236
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 54.0 bits (131), Expect = 3e-08
Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 1/131 (0%)
Query: 374 IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSG 433
GY Q DAL LT +++ ++ +P E L L + + LSG
Sbjct: 75 RGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSG 134
Query: 434 GNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEE 492
G +++++ A AL + ++ LDEP S +D R L + E G+ V+L +H+++E
Sbjct: 135 GMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDE 194
Query: 493 CEALCTKLTIM 503
L ++ ++
Sbjct: 195 AVFLADRVVVL 205
Score = 50.9 bits (123), Expect = 3e-07
Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 4/57 (7%)
Query: 283 LDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAA 339
LDEP S +D +R + E L+ ++ + G+TV+L TH +DEA L DR+ +++A
Sbjct: 155 LDEPFSALDALTREQLQEELLDIWRET----GKTVLLVTHDIDEAVFLADRVVVLSA 207
Score = 34.8 bits (81), Expect = 0.070
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNA 138
+GPSG G TL L ++ G+ +SG + +T G Q +A
Sbjct: 36 VGPSGC--GKSTL-L-----RIIAGLERPTSGEVLVDG----EPVTGPGPDRGYVFQQDA 83
Query: 139 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGM-QR 193
L LTV +++ +L+ VPK A+ ++ +G+ + + LSGGM QR
Sbjct: 84 LLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQR 139
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 54.4 bits (131), Expect = 3e-08
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 423 YSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GR 481
Y+ R+V+ LSGG +++S A L N ++ LDEPTS +DP + + I + ++
Sbjct: 124 YATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNL 183
Query: 482 CVILTSHNMEE 492
VI +HNME+
Sbjct: 184 TVIWITHNMEQ 194
Score = 47.1 bits (112), Expect = 8e-06
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
++LDEPTS +DP S I EL++K+ + TVI TH M++A +GD A + G
Sbjct: 153 LLLDEPTSALDPTSTEIIEELIVKL----KNKMNLTVIWITHNMEQAKRIGDYTAFLNKG 208
Query: 341 KL 342
L
Sbjct: 209 IL 210
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 54.3 bits (131), Expect = 4e-08
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 5/120 (4%)
Query: 403 PSVLLN----TIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPT 458
P + LN V + + L + R LSGG +++++ A L+ P++ LDEP
Sbjct: 98 PGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPF 157
Query: 459 SGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 517
S +DP R + + + E +++ +H+ E+ + ++ + NG+ GS L
Sbjct: 158 SALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQEL 217
Score = 41.2 bits (97), Expect = 6e-04
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGK 341
+LDEP S +DP R + L+ ++ T+++ TH+ ++A + DR+ + G+
Sbjct: 152 LLDEPFSALDPALRAEMLALVSQL----CDERKMTLLMVTHHPEDAARIADRVVFLDNGR 207
Query: 342 LQCCGS 347
+ GS
Sbjct: 208 IAAQGS 213
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 54.2 bits (131), Expect = 4e-08
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGK 341
++DE S +DP RR + + L+++ + +T++ TH +DEA LGDRIAI+ G+
Sbjct: 183 LMDEAFSALDPLIRREMQDELLRL----QAELQKTIVFITHDLDEALRLGDRIAIMKDGR 238
Query: 342 LQCCG 346
L G
Sbjct: 239 LVQVG 243
Score = 51.9 bits (125), Expect = 3e-07
Identities = 25/96 (26%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 413 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTC 472
E+L L + + LSGG ++++ A AL + ++ +DE S +DP RR +
Sbjct: 143 EALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDE 202
Query: 473 IERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQ 507
+ R +E + ++ +H+++E L ++ IM +G+
Sbjct: 203 LLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGR 238
Score = 29.9 bits (68), Expect = 3.3
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 11/103 (10%)
Query: 100 MLMGMLPVSSGTAKIYDHDI----RTDMTTIRR-SLGVCPQYNALFDKLTVEEHMWFYSQ 154
+ ++ +SG I DI R ++ +RR + + Q AL TV E++ F +
Sbjct: 69 CINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLE 128
Query: 155 LKQVPKDLAQ---LEISNMIGDLGIPHKRTSLANTLSGGMQRK 194
++ VP+ + E ++G G HK + LSGGMQ++
Sbjct: 129 VQGVPRAEREERAAEALELVGLEGWEHK---YPDELSGGMQQR 168
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 52.7 bits (127), Expect = 5e-08
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 488
R SGG +++L+ A LL + P++ LDEPT G+DP R L + I V + + +I +H
Sbjct: 97 RRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE-VLKDKTLIWITH 155
Query: 489 NMEECEALCTKLTIMVNGQFT 509
++ E + K+ + NG+
Sbjct: 156 HLTGIEHM-DKILFLENGKII 175
Score = 45.4 bits (108), Expect = 2e-05
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 15/69 (21%)
Query: 278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLG----DR 333
A V+LDEPT G+DP + R + L+ +V L +T+I TH+ L G D+
Sbjct: 117 APIVLLDEPTVGLDPITERQLLSLIFEV------LKDKTLIWITHH-----LTGIEHMDK 165
Query: 334 IAIIAAGKL 342
I + GK+
Sbjct: 166 ILFLENGKI 174
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 54.9 bits (132), Expect = 5e-08
Identities = 31/143 (21%), Positives = 60/143 (41%), Gaps = 5/143 (3%)
Query: 374 IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSG 433
IG Q AL +T ++ + P E L L Y R LSG
Sbjct: 73 IGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSG 132
Query: 434 GNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFL---WTCIERAVSEGRCVILTSHNM 490
G ++++ A AL ++ +DE S +DP R + ++ + + ++ +H++
Sbjct: 133 GMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATL--QKTIVFITHDL 190
Query: 491 EECEALCTKLTIMVNGQFTCLGS 513
+E + ++ IM G+ +G+
Sbjct: 191 DEAIRIGDRIVIMKAGEIVQVGT 213
Score = 54.5 bits (131), Expect = 7e-08
Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 18/107 (16%)
Query: 249 KQMALETLKKAGTSILV-------------AVTVLFAMSFVPASTVILDEPTSGVDPYSR 295
K+ ALE LK G V + A++ P +++DE S +DP R
Sbjct: 107 KEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEP-DILLMDEAFSALDPLIR 165
Query: 296 RSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKL 342
S+ + L K+ + +T++ TH +DEA +GDRI I+ AG++
Sbjct: 166 DSMQDELKKL----QATLQKTIVFITHDLDEAIRIGDRIVIMKAGEI 208
Score = 33.7 bits (77), Expect = 0.25
Identities = 23/114 (20%), Positives = 51/114 (44%), Gaps = 9/114 (7%)
Query: 91 LGLEFVSRSMLMGMLP--VSSGTAKIY-DHDIRTDMTTI------RRSLGVCPQYNALFD 141
+GL +S + ML + +I+ D + + + R+ +G+ Q ALF
Sbjct: 25 MGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFP 84
Query: 142 KLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKL 195
+T+ ++ +L P+ + + ++ +G+ + LSGGMQ+++
Sbjct: 85 HMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRV 138
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 53.8 bits (130), Expect = 6e-08
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL-TSHN 489
LSGG +++++ A AL+ L+ LDEPTS +D + + + E L SH+
Sbjct: 142 LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHD 201
Query: 490 MEECEALCTKLTIMVNGQFTCLGSATHLKS 519
+ E +C ++ +M NGQ +G L S
Sbjct: 202 LALVEHMCDRIAVMDNGQIVEIGPTEELLS 231
Score = 44.2 bits (105), Expect = 7e-05
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGK 341
ILDEPTS +D + I LL+++ L T + +H + + + DRIA++ G+
Sbjct: 164 ILDEPTSALDVSVQAQILNLLLEL-KKERGL---TYLFISHDLALVEHMCDRIAVMDNGQ 219
Query: 342 LQCCGSSVFLKNSFARGY 359
+ G + L + + Y
Sbjct: 220 IVEIGPTEELLSHPSHPY 237
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 54.7 bits (132), Expect = 6e-08
Identities = 27/118 (22%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 391 EHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTP 450
E++ F V+ +P E+L L Y+D+ LSGG ++++ A AL +
Sbjct: 125 ENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPD 184
Query: 451 LIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQ 507
++ +DE S +DP R + + ++ + ++ +H+++E + ++ IM +G+
Sbjct: 185 ILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGE 242
Score = 45.8 bits (109), Expect = 4e-05
Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGK 341
++DE S +DP R + + L+++ + +T++ TH +DEA +GDRIAI+ G+
Sbjct: 187 LMDEAFSALDPLIRTEMQDELLEL----QAKLKKTIVFITHDLDEALRIGDRIAIMKDGE 242
Query: 342 LQCCGS 347
+ G+
Sbjct: 243 IVQVGT 248
Score = 32.4 bits (74), Expect = 0.67
Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 36/142 (25%)
Query: 82 SGITLGLHTLGLE------FVSRSMLMGM---------------LPVSSGTAKIYDHDI- 119
+G+ +G++ L+ FV +MG+ + + G + DI
Sbjct: 38 TGLVVGVNDASLDVEEGEIFV----IMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIA 93
Query: 120 ---RTDMTTIRR-SLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQ---LEISNMIG 172
++ +RR + + Q AL TV E++ F +++ VPK + LE ++G
Sbjct: 94 KLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVG 153
Query: 173 DLGIPHKRTSLANTLSGGMQRK 194
G K N LSGGMQ++
Sbjct: 154 LEGYADKY---PNELSGGMQQR 172
>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 53.5 bits (129), Expect = 8e-08
Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 3/123 (2%)
Query: 400 RNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTS 459
+ +P + I+++ K + Y D+E + LSGG K++++ A L N +I DE TS
Sbjct: 112 KKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTS 171
Query: 460 GMDPGARRFLWTCIERAVSEG-RCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATH-L 517
+DP +R + + + +I +H+M+E L K+ + G+ G L
Sbjct: 172 MLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEA-ILADKVIVFSEGKLIAQGKPKEIL 230
Query: 518 KSK 520
+K
Sbjct: 231 NNK 233
Score = 46.9 bits (112), Expect = 1e-05
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
+I DE TS +DP +R I ++++ + +T+I TH MDEA +L D++ + + G
Sbjct: 164 IIFDESTSMLDPKGKREIKKIMVDL----RKTRKKTLISITHDMDEA-ILADKVIVFSEG 218
Query: 341 KLQCCGS 347
KL G
Sbjct: 219 KLIAQGK 225
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 54.9 bits (133), Expect = 8e-08
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 6/81 (7%)
Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIER--AVSEGRCVILT 486
R+LSGG ++ ++ A ALL + P++ LDEPTS MD + +R G+ ++L
Sbjct: 600 RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEE---RFKDRLKRWLAGKTLVLV 656
Query: 487 SHNMEECEALCTKLTIMVNGQ 507
+H + L ++ +M NG+
Sbjct: 657 THRTSLLD-LVDRIIVMDNGR 676
Score = 41.8 bits (99), Expect = 0.001
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
++LDEPTS +D S + L L+G+T++L TH DL+ DRI ++ G
Sbjct: 623 LLLDEPTSAMDNRSEERFKDRL------KRWLAGKTLVLVTHRTSLLDLV-DRIIVMDNG 675
Query: 341 KL 342
++
Sbjct: 676 RI 677
Score = 37.9 bits (89), Expect = 0.015
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 100 MLMGMLPVSSGTAKIYDHDIRT-DMTTIRRSLGVCPQYNALF 140
+L+G+ + G+ + DIR D +RR++G PQ LF
Sbjct: 510 LLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLF 551
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 53.6 bits (129), Expect = 1e-07
Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW 470
VNE+L + + +RE LSGG K++++ A A+ +I LDE TS +DP R L
Sbjct: 121 VNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELI 180
Query: 471 TCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQ 507
I+ + VI +H+++E AL ++ +M NGQ
Sbjct: 181 KTIKGIRDDYQMTVISITHDLDEV-ALSDRVLVMKNGQ 217
Score = 40.5 bits (95), Expect = 0.002
Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 11/94 (11%)
Query: 265 VAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYM 324
VA+ AM +ILDE TS +DP R LIK TVI TH +
Sbjct: 149 VAIAGAVAMR---PKIIILDEATSMLDPEGRLE----LIKTIKGIRDDYQMTVISITHDL 201
Query: 325 DEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARG 358
DE L DR+ ++ G+++ S+ + F+RG
Sbjct: 202 DEV-ALSDRVLVMKNGQVE---STSTPRELFSRG 231
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 53.2 bits (128), Expect = 1e-07
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 410 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFL 469
V+E+L + + +D E LSGG K++++ A L N +I LDE TS +DP AR+ L
Sbjct: 122 RVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNL 181
Query: 470 WTCIERAVSEGRCVILT-SHNMEE 492
+ + SE I++ +H++ E
Sbjct: 182 LDLVRKVKSEHNITIISITHDLSE 205
Score = 37.8 bits (88), Expect = 0.012
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 8/78 (10%)
Query: 265 VAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYM 324
VA+ + A++ S +ILDE TS +DP +R+++ +L+ KV + T+I TH +
Sbjct: 151 VAIAGVLALN---PSVIILDEATSMLDPDARQNLLDLVRKVKSEHNI----TIISITHDL 203
Query: 325 DEADLLGDRIAIIAAGKL 342
EA + D + ++ G +
Sbjct: 204 SEA-MEADHVIVMNKGTV 220
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 54.1 bits (130), Expect = 1e-07
Identities = 27/104 (25%), Positives = 55/104 (52%)
Query: 409 TIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRF 468
V ++ + + ++DR V +LSGG ++++ A AL TP++ LDEPT+ +D +
Sbjct: 118 AAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVR 177
Query: 469 LWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLG 512
+ R V +G+ + H+++ C +L ++ +G+ G
Sbjct: 178 TLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAG 221
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 54.5 bits (132), Expect = 1e-07
Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHN 489
LSGG ++++ A+AL L+ DEPT+ +D + + ++ E G V+ +H+
Sbjct: 155 LSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHD 214
Query: 490 MEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVK 528
+ L ++ +M G+ G + S Y+
Sbjct: 215 LGVVAELADRVVVMYKGEIVETGPTEEILSNPQHPYTRG 253
Score = 47.6 bits (114), Expect = 1e-05
Identities = 35/153 (22%), Positives = 65/153 (42%), Gaps = 8/153 (5%)
Query: 363 LDMKSAPQKS-----YIGYCPQFDALNDRLTPREHLEFYSRVRNLPS-VLLNTIVNESLN 416
LD+ + + + + +LN R+T + L R+ S V E L
Sbjct: 355 LDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLE 414
Query: 417 KFALGH-YSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIER 475
L + DR LSGG +++++ A AL L+ LDEP S +D + + ++
Sbjct: 415 LVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKD 474
Query: 476 AVSE-GRCVILTSHNMEECEALCTKLTIMVNGQ 507
E G + SH++ + ++ +M +G+
Sbjct: 475 LQEELGLTYLFISHDLAVVRYIADRVAVMYDGR 507
Score = 38.3 bits (90), Expect = 0.011
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
+ILDEP S +D + + LL G T + +H + + DR+A++ G
Sbjct: 451 LILDEPVSALDVSVQAQVLNLLKD----LQEELGLTYLFISHDLAVVRYIADRVAVMYDG 506
Query: 341 KLQCCGSS 348
++ G +
Sbjct: 507 RIVEEGPT 514
Score = 36.0 bits (84), Expect = 0.055
Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Query: 282 ILDEPTSGVDPYSRRSIWELL--IKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAA 339
I DEPT+ +D ++ I +LL ++ G V+ TH + L DR+ ++
Sbjct: 177 IADEPTTALDVTTQAQILDLLKDLQREL------GMAVLFITHDLGVVAELADRVVVMYK 230
Query: 340 GKLQCCGSSVFLKNSFARGYYLSLDMKSAP 369
G++ G + + ++ Y L + + P
Sbjct: 231 GEIVETGPTEEILSNPQHPYTRGL-LAAVP 259
Score = 29.9 bits (68), Expect = 4.5
Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 15/109 (13%)
Query: 100 MLMGMLP----VSSGTAKIYDHDI----RTDMTTIR-RSLGVCPQ--YNALFDKLTVEEH 148
LMG+LP ++SG + D+ +M +R + + + Q +L +T+ +
Sbjct: 54 ALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQ 113
Query: 149 MWFYSQLKQ-VPKDLAQLEISNMIGDLGIPHK--RTSLANTLSGGM-QR 193
+ +L + A+ ++ +G+P R + LSGGM QR
Sbjct: 114 IREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQR 162
>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 52.7 bits (127), Expect = 1e-07
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW 470
++E L LG DR LS G K+ L + L + L+ LDEP +GM
Sbjct: 128 IDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTA 187
Query: 471 TCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 519
+ ++++ +++ H+M + K+T++ G GS +++
Sbjct: 188 ELL-KSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQN 235
Score = 31.2 bits (71), Expect = 1.2
Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGK 341
+LDEP +G+ ELL + ++++ H M + D++ ++ G
Sbjct: 170 LLDEPVAGMTDAETEKTAELLKSL------AGKHSILVVEHDMGFVREIADKVTVLHEGS 223
Query: 342 LQCCGSSVFLKN 353
+ GS ++N
Sbjct: 224 VLAEGSLDEVQN 235
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 53.2 bits (127), Expect = 1e-07
Identities = 32/101 (31%), Positives = 56/101 (55%), Gaps = 10/101 (9%)
Query: 265 VAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYM 324
VA+ + AM ++LDEPT+G+DP +R +++++ + H SG+TV+L TH M
Sbjct: 153 VAIAGILAME---PEVLVLDEPTAGLDPKARIE----MMQLFESIHQ-SGQTVVLVTHLM 204
Query: 325 DEADLLGDRIAIIAAGKLQCCG--SSVFLKNSFARGYYLSL 363
D+ D + ++ G + CG S VF + F + + L +
Sbjct: 205 DDVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGV 245
Score = 47.4 bits (112), Expect = 1e-05
Identities = 25/85 (29%), Positives = 43/85 (50%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
LSGG R+++ A L ++ LDEPT+G+DP AR + E G+ V+L +H M
Sbjct: 145 LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLM 204
Query: 491 EECEALCTKLTIMVNGQFTCLGSAT 515
++ + ++ G G+ +
Sbjct: 205 DDVADYADYVYLLEKGHIISCGTPS 229
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 53.2 bits (128), Expect = 1e-07
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 265 VAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYM 324
VA+ + AM ++LDEPT+G+DP R+ + L K++ SG T++L TH M
Sbjct: 154 VAIAGILAME---PKILVLDEPTAGLDPKGRKELMTLFKKLH-----QSGMTIVLVTHLM 205
Query: 325 DEADLLGDRIAIIAAGKLQCCG--SSVFLKNSF 355
D+ D + ++ GKL G +F F
Sbjct: 206 DDVANYADFVYVLEKGKLVLSGKPKDIFQDVDF 238
Score = 45.5 bits (108), Expect = 4e-05
Identities = 22/62 (35%), Positives = 37/62 (59%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
LSGG R+++ A L ++ LDEPT+G+DP R+ L T ++ G ++L +H M
Sbjct: 146 LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLM 205
Query: 491 EE 492
++
Sbjct: 206 DD 207
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 52.2 bits (126), Expect = 1e-07
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 12/101 (11%)
Query: 415 LNKFALGHYS--DREV----RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRF 468
+ F H + D ++ R LSGG ++ ++ A ALL + P++ LDEPTS MD +
Sbjct: 119 VTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEER 178
Query: 469 LWTCIER--AVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 507
L ER + + +I+ +H + L ++ +M +G+
Sbjct: 179 L---KERLRQLLGDKTLIIITHRPSLLD-LVDRIIVMDSGR 215
Score = 39.9 bits (94), Expect = 0.002
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
++LDEPTS +D S + E L L +T+I+ TH DL+ DRI ++ +G
Sbjct: 162 LLLDEPTSAMDMNSEERLKERL------RQLLGDKTLIIITHRPSLLDLV-DRIIVMDSG 214
Query: 341 KL 342
++
Sbjct: 215 RI 216
Score = 32.6 bits (75), Expect = 0.38
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 100 MLMGMLPVSSGTAKIYDHDIRT-DMTTIRRSLGVCPQYNALF 140
+L G+ +SG+ + DIR D +RR++G PQ LF
Sbjct: 49 LLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLF 90
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 53.6 bits (129), Expect = 2e-07
Identities = 26/88 (29%), Positives = 45/88 (51%)
Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 484
D +V LS +K+ L A L+ + +I +DEPTS + +L+ + + EG ++
Sbjct: 140 DEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIV 199
Query: 485 LTSHNMEECEALCTKLTIMVNGQFTCLG 512
SH + E +C + T+M +G C G
Sbjct: 200 YISHKLAEIRRICDRYTVMKDGSSVCSG 227
Score = 53.2 bits (128), Expect = 3e-07
Identities = 23/94 (24%), Positives = 50/94 (53%)
Query: 422 HYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR 481
H ++ + LSGGN++K+ + L +I DEPT G+D GA+ ++ + + +G+
Sbjct: 401 HSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGK 460
Query: 482 CVILTSHNMEECEALCTKLTIMVNGQFTCLGSAT 515
+++ S + E +C ++ + G+ T + +
Sbjct: 461 VILMVSSELPEIITVCDRIAVFCEGRLTQILTNR 494
Score = 35.1 bits (81), Expect = 0.12
Identities = 16/64 (25%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 279 STVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIA 338
+I DEPT G+D ++ I++++ ++ + G+ +++ + + E + DRIA+
Sbjct: 429 EVIIFDEPTRGIDVGAKAEIYKVMRQL-----ADDGKVILMVSSELPEIITVCDRIAVFC 483
Query: 339 AGKL 342
G+L
Sbjct: 484 EGRL 487
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 54.1 bits (130), Expect = 2e-07
Identities = 40/123 (32%), Positives = 59/123 (47%), Gaps = 10/123 (8%)
Query: 375 GYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLN----TIVNESLNKFALGHYSDREV-- 428
GYC Q D + ++T RE L YS LP + V+E + L + D V
Sbjct: 956 GYCEQNDIHSPQVTVRESL-IYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGL 1014
Query: 429 ---RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL 485
LS +++L+ A+ L+ N +IF+DEPTSG+D A + + V GR V+
Sbjct: 1015 PGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1074
Query: 486 TSH 488
T H
Sbjct: 1075 TIH 1077
Score = 37.1 bits (86), Expect = 0.029
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 484
D +R +SGG K++++T ++G T +F+DE ++G+D + C+++ V +
Sbjct: 331 DEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATV 390
Query: 485 LTS 487
L S
Sbjct: 391 LMS 393
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 52.3 bits (126), Expect = 2e-07
Identities = 34/166 (20%), Positives = 68/166 (40%), Gaps = 12/166 (7%)
Query: 365 MKSAPQKSY---IGYCPQFDALNDRLTPREHLEFYSRVR--------NLPSVLLNTIVNE 413
+K + IG Q L RL+ E++ L S +
Sbjct: 71 LKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALD 130
Query: 414 SLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDP-GARRFLWTC 472
+L + + + + TLSGG +++++ A AL+ +I DEP + +DP A++ +
Sbjct: 131 ALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDIL 190
Query: 473 IERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 518
+ +G VI+ H ++ + ++ + G+ G A+ L
Sbjct: 191 KDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELT 236
Score = 45.3 bits (108), Expect = 3e-05
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 24/109 (22%)
Query: 249 KQMALETLKKAG--------TSIL-------VAVTVLFAMSFVPASTVIL-DEPTSGVDP 292
K AL+ L++ G S L VA+ A + V +IL DEP + +DP
Sbjct: 125 KAQALDALERVGILDKAYQRASTLSGGQQQRVAI----ARALVQQPKIILADEPVASLDP 180
Query: 293 YSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGK 341
S + + ++L + + G TVI+ H +D A DRI + AG+
Sbjct: 181 ESAKKVMDILKDI----NQEDGITVIVNLHQVDLAKKYADRIIGLKAGR 225
Score = 35.7 bits (83), Expect = 0.054
Identities = 31/126 (24%), Positives = 48/126 (38%), Gaps = 29/126 (23%)
Query: 91 LGLEFVSRSMLM----GMLPVSSGTAKIYDHDIRT----DMTTIRRSLGVCPQYNALFDK 142
+G +S L+ G++ +SG I ++ +RR +G+ Q L +
Sbjct: 36 IGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPR 95
Query: 143 LTVEE---------HMWFYSQLKQVPKD-----LAQLEISNMIGDLGIPHKRTSLANTLS 188
L+V E + S K+ L LE +GI K A+TLS
Sbjct: 96 LSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALE------RVGILDKAYQRASTLS 149
Query: 189 GG-MQR 193
GG QR
Sbjct: 150 GGQQQR 155
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 52.3 bits (125), Expect = 2e-07
Identities = 28/106 (26%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Query: 413 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDP-GARRFLWT 471
++L + + H++ + V TLSGG +++++ A AL+ +I DEP + +DP AR + T
Sbjct: 135 QALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDT 194
Query: 472 CIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 517
+ ++G V++T H ++ C ++ + G GS+
Sbjct: 195 LRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQF 240
Score = 33.8 bits (77), Expect = 0.18
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 16/129 (12%)
Query: 248 HKQMALETLKKAG--------TSILVA---VTVLFAMSFVPASTVIL-DEPTSGVDPYSR 295
KQ AL+ L + G S L V A + + + VIL DEP + +DP S
Sbjct: 129 QKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESA 188
Query: 296 RSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSF 355
R + + L + + G TV++T H +D A +RI + G + GSS N
Sbjct: 189 RIVMDTLRDI----NQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQFDNER 244
Query: 356 ARGYYLSLD 364
Y S++
Sbjct: 245 FDHLYRSIN 253
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 52.6 bits (127), Expect = 2e-07
Identities = 40/146 (27%), Positives = 72/146 (49%), Gaps = 3/146 (2%)
Query: 374 IGYCPQ-FDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLS 432
IG Q F+ L+ R T E++ F + +P + V E L L +DR LS
Sbjct: 85 IGMIFQHFNLLSSR-TVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLS 143
Query: 433 GGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNME 491
GG K++++ A AL N ++ DE TS +DP + + ++ E G ++L +H ME
Sbjct: 144 GGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME 203
Query: 492 ECEALCTKLTIMVNGQFTCLGSATHL 517
+ +C ++ ++ G+ G+ + +
Sbjct: 204 VVKRICDRVAVLDQGRLVEEGTVSEV 229
Score = 43.4 bits (103), Expect = 2e-04
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
++ DE TS +DP + +SI ELL + + G T++L TH M+ + DR+A++ G
Sbjct: 163 LLCDEATSALDPETTQSILELLKDI----NRELGLTIVLITHEMEVVKRICDRVAVLDQG 218
Query: 341 KL 342
+L
Sbjct: 219 RL 220
Score = 30.7 bits (70), Expect = 2.5
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 108 SSGTAKIYDHDI----RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLA 163
+SG+ + D+ ++ +R+ +G+ Q+ L TV E++ F +L VPK
Sbjct: 59 TSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEI 118
Query: 164 QLEISNMIGDLGIPHKRTSLANTLSGGM-QR 193
+ ++ ++ +G+ K LSGG QR
Sbjct: 119 KQRVAELLELVGLSDKADRYPAQLSGGQKQR 149
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 52.1 bits (125), Expect = 2e-07
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 407 LNTIVNESLNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
L+TIV +SL AL DR +LSGG +++L A L N +I +DEP S +D
Sbjct: 122 LDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALD 181
Query: 463 PGARRFLWTCIERAVSEGRCVILTSHNMEE 492
P A + IE + + VI+ +HNM++
Sbjct: 182 PIATAKIEDLIED-LKKEYTVIIVTHNMQQ 210
Score = 37.5 bits (87), Expect = 0.013
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
Query: 276 VPASTVILDEPTSGVDPYSRRSIWELLIKV--YYASHSLSGRTVILTTHYMDEADLLGDR 333
V +++DEP S +DP + I +L+ + Y TVI+ TH M +A + D
Sbjct: 166 VNPEVILMDEPCSALDPIATAKIEDLIEDLKKEY--------TVIIVTHNMQQAARVSDY 217
Query: 334 IAIIAAGKL 342
+ GKL
Sbjct: 218 TGFMYLGKL 226
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 51.9 bits (125), Expect = 3e-07
Identities = 28/104 (26%), Positives = 56/104 (53%)
Query: 410 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFL 469
VN+++ + + H +DR + LSGG +++ A+ L +TP++ LDEPT+ +D + L
Sbjct: 118 RVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVEL 177
Query: 470 WTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 513
+ ++G+ V+ H++ + C L ++ NG G+
Sbjct: 178 MRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGT 221
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 53.1 bits (128), Expect = 3e-07
Identities = 27/83 (32%), Positives = 50/83 (60%)
Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 484
++ + LSGGN++K++ A L+ ++ LDEPT G+D GA++ ++ I + +EG +I
Sbjct: 390 EQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSII 449
Query: 485 LTSHNMEECEALCTKLTIMVNGQ 507
L S M E + ++ +M G+
Sbjct: 450 LVSSEMPEVLGMSDRILVMHEGR 472
Score = 43.1 bits (102), Expect = 3e-04
Identities = 28/94 (29%), Positives = 47/94 (50%)
Query: 415 LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIE 474
L + L SD+ V LS G ++ + A L + +I +DEPT + L+ I
Sbjct: 126 LARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIR 185
Query: 475 RAVSEGRCVILTSHNMEECEALCTKLTIMVNGQF 508
S+GR ++ SH ++E +C +T+ +GQF
Sbjct: 186 ELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQF 219
Score = 35.4 bits (82), Expect = 0.095
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGK 341
ILDEPT GVD +++ I++ LI + A G ++IL + M E + DRI ++ G+
Sbjct: 418 ILDEPTRGVDVGAKKEIYQ-LINQFKA----EGLSIILVSSEMPEVLGMSDRILVMHEGR 472
Query: 342 L 342
+
Sbjct: 473 I 473
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 53.0 bits (128), Expect = 3e-07
Identities = 29/84 (34%), Positives = 45/84 (53%)
Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 484
D ++ LS G ++ + A AL N +I DEPTS + L+ I +EGR ++
Sbjct: 135 DTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVIL 194
Query: 485 LTSHNMEECEALCTKLTIMVNGQF 508
SH MEE ALC +T+ +G++
Sbjct: 195 YVSHRMEEIFALCDAITVFKDGRY 218
Score = 43.7 bits (104), Expect = 2e-04
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 10/88 (11%)
Query: 425 DREVRTLSGGNKRKLSTAIALLG-----NTPLIFLDEPTSGMDPGARRFLWTCIERAVSE 479
++ + LSGGN++K A+LG + +I LDEPT G+D GA+ ++ I ++
Sbjct: 391 EQLIMNLSGGNQQK-----AILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQ 445
Query: 480 GRCVILTSHNMEECEALCTKLTIMVNGQ 507
G V+ S ++ E + ++ +M G+
Sbjct: 446 GVAVLFVSSDLPEVLGVADRIVVMREGR 473
Score = 33.7 bits (78), Expect = 0.27
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAII 337
A + DEPTS + S R I E L +V + GR ++ +H M+E L D I +
Sbjct: 159 ARVIAFDEPTSSL---SAREI-EQLFRVIRELRA-EGRVILYVSHRMEEIFALCDAITVF 213
Query: 338 AAGKL 342
G+
Sbjct: 214 KDGRY 218
Score = 31.0 bits (71), Expect = 2.0
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 13/66 (19%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSL--SGRTVILTTHYMDEADLLG--DRIAI 336
++LDEPT G+D ++ I+ ++ + L G V+ + D ++LG DRI +
Sbjct: 418 ILLDEPTRGIDVGAKHEIYNVI-------YELAAQGVAVLFVSS--DLPEVLGVADRIVV 468
Query: 337 IAAGKL 342
+ G++
Sbjct: 469 MREGRI 474
>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 52.2 bits (125), Expect = 3e-07
Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 21/122 (17%)
Query: 374 IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSG 433
I Y P+ +ND+ E +E ++L L V++ L+K ALG LSG
Sbjct: 140 IAYGPRLHGINDKKQLEEIVE-----KSLRKAALWDEVSDRLDKNALG---------LSG 185
Query: 434 GNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR---CVILTSHNM 490
G +++L A L ++ LDEPTS +DP A IE + E R +++ +HNM
Sbjct: 186 GQQQRLCVARTLAVEPEILLLDEPTSALDPKAT----AKIEDLIQELRGSYTIMIVTHNM 241
Query: 491 EE 492
++
Sbjct: 242 QQ 243
Score = 33.7 bits (77), Expect = 0.20
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 276 VPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGD 332
V ++LDEPTS +DP + I E LI+ S+ T+++ TH M +A + D
Sbjct: 199 VEPEILLLDEPTSALDPKATAKI-EDLIQELRGSY-----TIMIVTHNMQQASRVSD 249
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 50.3 bits (121), Expect = 3e-07
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
LSGG +++L A AL GN ++ LDEP S +D R L I + G I+ +H
Sbjct: 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP 156
Query: 491 EECEALCTKLTIMVNGQ 507
E + ++ ++ +G+
Sbjct: 157 ETLAS-ADRILVLEDGR 172
Score = 34.5 bits (80), Expect = 0.063
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
++LDEP S +D R++ + + A+ +G T I+ H E DRI ++ G
Sbjct: 118 LVLDEPNSHLDVEGERALNQAI-----AALKAAGATRIVIAHRP-ETLASADRILVLEDG 171
Query: 341 KL 342
++
Sbjct: 172 RV 173
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 51.0 bits (122), Expect = 3e-07
Identities = 24/98 (24%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW 470
+ +L + L R LSGG +++++ A L+ + P++ LDEP + +DP R +
Sbjct: 109 IEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEML 168
Query: 471 TCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQ 507
+ +E V++ +H E+ + L ++ + NG+
Sbjct: 169 DLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGR 206
Score = 40.9 bits (96), Expect = 7e-04
Identities = 17/62 (27%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
++LDEP + +DP R + +L++ + H+ + TV++ TH ++A L R+ + G
Sbjct: 150 LLLDEPFAALDPALRAEMLDLVLDL----HAETKMTVLMVTHQPEDAKRLAQRVVFLDNG 205
Query: 341 KL 342
++
Sbjct: 206 RI 207
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 51.8 bits (124), Expect = 3e-07
Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 410 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFL 469
IV +L + + + R++ LSGG K+++ A A+ +I LDEP +G+D +
Sbjct: 122 IVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARI 181
Query: 470 WTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 513
+ + EG+ +++++HN+ C T+MV G T L S
Sbjct: 182 ISLLRELRDEGKTMLVSTHNLGSVTEFC-DYTVMVKG--TVLAS 222
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 52.7 bits (127), Expect = 4e-07
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 488
LSGG +++L+ A ALL + P++ LDEPT +D L + A GR V+L +H
Sbjct: 470 ARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDL-LAALSGRTVVLITH 528
Query: 489 N 489
+
Sbjct: 529 H 529
Score = 39.3 bits (92), Expect = 0.005
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Query: 277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTH 322
A ++LDEPT +D + + E L+ LSGRTV+L TH
Sbjct: 489 DAPILLLDEPTEHLDAETADELLEDLLAA------LSGRTVVLITH 528
Score = 28.9 bits (65), Expect = 9.5
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 9/64 (14%)
Query: 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-DMTTIRRSLGVCPQYN 137
LGPSG G TL + L G+L G + + + D +RR + VC Q
Sbjct: 367 LGPSGS--GKSTLL------ATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDA 418
Query: 138 ALFD 141
LFD
Sbjct: 419 HLFD 422
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 51.5 bits (123), Expect = 4e-07
Identities = 34/132 (25%), Positives = 61/132 (46%), Gaps = 1/132 (0%)
Query: 388 TPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLG 447
T E L F LP + + V+ +L + L Y R +TLSGG + ++ A L
Sbjct: 94 TVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTM 153
Query: 448 NTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 507
+ DE TS +DP + + I++ +G+ ++ +HN+EE ++ +M G+
Sbjct: 154 EPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHD-ADRIIVMDRGK 212
Query: 508 FTCLGSATHLKS 519
G ++ S
Sbjct: 213 IVLEGEPENVLS 224
Score = 35.3 bits (81), Expect = 0.076
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Query: 265 VAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYM 324
VA+ + M +I DE TS +DP S ++ E + K++ G+T++ TH +
Sbjct: 145 VALAGILTME---PECLIFDEVTSMLDPDSGIAVLERIKKLHE-----KGKTIVYITHNL 196
Query: 325 DEADLLGDRIAIIAAGKL 342
+E DRI ++ GK+
Sbjct: 197 EELH-DADRIIVMDRGKI 213
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 50.8 bits (122), Expect = 6e-07
Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 15/138 (10%)
Query: 379 QFDALNDRLTPREHLEF----YSRVRNLPSVLLNT----IVNESLNKFALGHYSDREVRT 430
Q + +N RLT R+ + F YS+ R L I+NE++ L SDR +
Sbjct: 82 QENHINSRLTVRDLVGFGRFPYSQGR------LTKEDRRIINEAIEYLHLEDLSDRYLDE 135
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHN 489
LSGG +++ A+ L +T + LDEP + +D + + R E G+ +++ H+
Sbjct: 136 LSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHD 195
Query: 490 MEECEALCTKLTIMVNGQ 507
+ + + NG+
Sbjct: 196 INFASCYSDHIVALKNGK 213
>gnl|CDD|222036 pfam13304, AAA_21, AAA domain.
Length = 256
Score = 50.9 bits (121), Expect = 6e-07
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
Query: 382 ALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLST 441
L+ L L +RN+ LL+ +V + L ++ +S G KR L+
Sbjct: 142 LLSILLPFSFILGNLRNLRNIELKLLD-LVKRLFLESDLLRLLKLLIKGISDGTKRLLAL 200
Query: 442 AIALL---GNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 489
+ALL L+ +DEP +G+ P R L ++ +G +I T+H+
Sbjct: 201 LLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQLIFTTHS 251
Score = 45.1 bits (106), Expect = 4e-05
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 260 GTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVIL 319
GT L+A+ + + S +++DEP +G+ P R + ELL S G +I
Sbjct: 193 GTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELL-----KELSEKGAQLIF 247
Query: 320 TTH 322
TTH
Sbjct: 248 TTH 250
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 49.8 bits (120), Expect = 6e-07
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWT-CIERAVSEGRCVILTSH 488
LSGG K+++S A A+ + + LD+P S +D R ++ CI + + IL +H
Sbjct: 127 NLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTH 186
Query: 489 NMEECEALCTKLTIMVNGQ 507
++ ++ ++ NG+
Sbjct: 187 QLQLLPH-ADQIVVLDNGR 204
Score = 41.3 bits (98), Expect = 5e-04
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 11/67 (16%)
Query: 278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTH---YMDEADLLGDRI 334
A +LD+P S VD + R I+E I L+ +T IL TH + A D+I
Sbjct: 146 ADIYLLDDPLSAVDAHVGRHIFENCIL----GLLLNNKTRILVTHQLQLLPHA----DQI 197
Query: 335 AIIAAGK 341
++ G+
Sbjct: 198 VVLDNGR 204
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase [Transport and binding
proteins, Anions, Transport and binding proteins,
Other].
Length = 230
Score = 50.2 bits (120), Expect = 7e-07
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 3/123 (2%)
Query: 387 LTPREH--LEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIA 444
LT RE+ L + +L IV E + L +D+ LSGG K++++ A A
Sbjct: 69 LTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARA 128
Query: 445 LLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC-VILTSHNMEECEALCTKLTIM 503
L ++ LDEP +D R L + + E R V++ +H+++E L ++ ++
Sbjct: 129 LSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVML 188
Query: 504 VNG 506
NG
Sbjct: 189 TNG 191
Score = 43.2 bits (102), Expect = 1e-04
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 267 VTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDE 326
V + A+S P ++LDEP +D +R ++ E L++++ TV++ TH +DE
Sbjct: 123 VAIARALSIRP-KVLLLDEPFGALDALTRGNLQEELMQIWEEHRV----TVLMVTHDVDE 177
Query: 327 ADLLGDRIAIIAAG 340
A LL DR+ ++ G
Sbjct: 178 ALLLSDRVVMLTNG 191
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 50.3 bits (121), Expect = 7e-07
Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 17/110 (15%)
Query: 407 LNTIVNESLNKFALGHYSDREV------RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSG 460
L+ V E+L K AL EV LSGG +++L A AL ++ LDEPTS
Sbjct: 116 LDERVEEALRKAAL----WDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSA 171
Query: 461 MDPGARRFLWTCIERAVSEGR---CVILTSHNMEECEALCTKLTIMVNGQ 507
+DP + IE ++E + +++ +HNM++ + + ++NG+
Sbjct: 172 LDPISTA----KIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGR 217
Score = 49.9 bits (120), Expect = 1e-06
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
Query: 283 LDEPTSGVDPYSRRSIWELLIKVYYASHSLSGR-TVILTTHYMDEADLLGDRIAIIAAGK 341
LDEPTS +DP S I E LI L T+++ TH M +A + DR A + G+
Sbjct: 165 LDEPTSALDPISTAKI-EELI------AELKKEYTIVIVTHNMQQAARVADRTAFLLNGR 217
Query: 342 L 342
L
Sbjct: 218 L 218
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 51.8 bits (124), Expect = 7e-07
Identities = 41/124 (33%), Positives = 60/124 (48%), Gaps = 10/124 (8%)
Query: 374 IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVL---LNTIVNES------LNKFALGHYS 424
G+ Q D L LT RE L F S +R LP L +V ES L K
Sbjct: 142 TGFVTQDDILYPHLTVRETLVFCSLLR-LPKSLTKQEKILVAESVISELGLTKCENTIIG 200
Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 484
+ +R +SGG ++++S A +L N L+ LDEPTSG+D A L + +G+ ++
Sbjct: 201 NSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIV 260
Query: 485 LTSH 488
+ H
Sbjct: 261 TSMH 264
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 50.9 bits (122), Expect = 8e-07
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW 470
V+ESL K + Y LSGG K++++ A L I DEPT+ +DP RR +
Sbjct: 125 VDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVV 184
Query: 471 TCIERAVSE-GRCVILTSHNMEE 492
I+ + G +IL +H MEE
Sbjct: 185 NTIKELNKKYGITIILITHYMEE 207
Score = 50.5 bits (121), Expect = 9e-07
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 8/78 (10%)
Query: 265 VAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYM 324
VA+ + AM +I DEPT+ +DP RR + + ++ + G T+IL THYM
Sbjct: 153 VAIAGILAMR---PECIIFDEPTAMLDPSGRREVVNTIKEL----NKKYGITIILITHYM 205
Query: 325 DEADLLGDRIAIIAAGKL 342
+EA + DRI ++ +GK+
Sbjct: 206 EEA-VEADRIIVMDSGKV 222
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 51.5 bits (124), Expect = 9e-07
Identities = 28/77 (36%), Positives = 45/77 (58%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
LSGGN++K A LL N ++ LDEPT G+D GA+ ++ I + V +G +I+ S +
Sbjct: 406 LSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSEL 465
Query: 491 EECEALCTKLTIMVNGQ 507
E L ++ +M G+
Sbjct: 466 PEVLGLSDRVLVMHEGK 482
Score = 37.6 bits (88), Expect = 0.020
Identities = 21/80 (26%), Positives = 36/80 (45%)
Query: 428 VRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTS 487
V L G ++ + A AL L+ LDEPT+ + L I + G I S
Sbjct: 141 VGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYIS 200
Query: 488 HNMEECEALCTKLTIMVNGQ 507
H + E +A+ + ++ +G+
Sbjct: 201 HKLNEVKAISDTICVIRDGR 220
Score = 30.7 bits (70), Expect = 2.6
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 11/65 (16%)
Query: 282 ILDEPTSGVDPYSRRSIWEL---LIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIA 338
ILDEPT G+D ++ I++L L++ G +I+ + + E L DR+ ++
Sbjct: 428 ILDEPTRGIDVGAKYEIYKLINQLVQ--------QGVAIIVISSELPEVLGLSDRVLVMH 479
Query: 339 AGKLQ 343
GKL+
Sbjct: 480 EGKLK 484
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 51.0 bits (122), Expect = 9e-07
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 5/122 (4%)
Query: 401 NLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSG 460
N P + V E L LG D LSGG K++++ A AL N ++ DE TS
Sbjct: 111 NTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSA 170
Query: 461 MDPGARRFLWTC---IERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 517
+DP + + I R + G ++L +H M+ + +C + ++ NG+ G+ + +
Sbjct: 171 LDPATTQSILELLKEINRRL--GLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEI 228
Query: 518 KS 519
S
Sbjct: 229 FS 230
Score = 42.9 bits (101), Expect = 3e-04
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 284 DEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKL 342
DE TS +DP + +SI ELL ++ + G T++L TH MD + D +A+I+ G+L
Sbjct: 165 DEATSALDPATTQSILELLKEI----NRRLGLTILLITHEMDVVKRICDCVAVISNGEL 219
Score = 34.1 bits (78), Expect = 0.21
Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 108 SSGTAKIYDHDIRT----DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLA 163
+SG+ + D+ T ++T RR +G+ Q+ L TV ++ +L PKD
Sbjct: 58 TSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEI 117
Query: 164 QLEISNMIGDLGIPHKRTSLANTLSGGMQRKL 195
+ +++ ++ +G+ K S + LSGG ++++
Sbjct: 118 KRKVTELLALVGLGDKHDSYPSNLSGGQKQRV 149
>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 176
Score = 48.9 bits (117), Expect = 1e-06
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 407 LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTP--LIFLDEPTSGMDPG 464
L +++ L LG +++ TLSGG +++ A L P L LDEP++G+
Sbjct: 68 LQFLIDVGLGYLTLG----QKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQ 123
Query: 465 ARRFLWTCIERAVSEGRCVILTSHN 489
L I+ + G VIL HN
Sbjct: 124 DINQLLEVIKGLIDLGNTVILIEHN 148
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 47.8 bits (115), Expect = 1e-06
Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSH 488
LSGG K +L+ A LL N L+ LDEPT+ +D + L E A+ E VIL SH
Sbjct: 71 LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEAL----EEALKEYPGTVILVSH 125
Score = 30.5 bits (70), Expect = 1.2
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 9/55 (16%)
Query: 269 VLFA-MSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTH 322
+ A + + ++LDEPT+ +D S ++ E L + Y TVIL +H
Sbjct: 79 LALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKE-YP-------GTVILVSH 125
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 50.9 bits (122), Expect = 1e-06
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 489
+LSGGN++K+ LL ++ LDEPT G+D GA+ ++ I + + +I+ S
Sbjct: 391 SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSE 450
Query: 490 MEECEALCTKLTIMVNGQ 507
M E + ++ +M NG
Sbjct: 451 MPELLGITDRILVMSNGL 468
Score = 47.4 bits (113), Expect = 2e-05
Identities = 27/82 (32%), Positives = 43/82 (52%)
Query: 427 EVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILT 486
+V TLS + + A A N ++ +DEPTS + L+T I + G ++
Sbjct: 131 KVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYI 190
Query: 487 SHNMEECEALCTKLTIMVNGQF 508
SH MEE LC ++TI+ +GQ+
Sbjct: 191 SHKMEEIFQLCDEITILRDGQW 212
Score = 31.6 bits (72), Expect = 1.2
Identities = 19/64 (29%), Positives = 38/64 (59%), Gaps = 9/64 (14%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLG--DRIAIIA 338
++LDEPT G+D ++ I++L+ ++ + + +I+ + M E LLG DRI +++
Sbjct: 413 LMLDEPTRGIDVGAKFEIYQLIAEL-----AKKDKGIIIISSEMPE--LLGITDRILVMS 465
Query: 339 AGKL 342
G +
Sbjct: 466 NGLV 469
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 49.7 bits (118), Expect = 1e-06
Identities = 51/185 (27%), Positives = 78/185 (42%), Gaps = 24/185 (12%)
Query: 345 CGSSVFLKNSFARGYYLSLDMKSAPQKSYIG---YCPQFDALNDR-------LTPREHL- 393
CG S FL+ + R L +K Y G Y FD L R TP L
Sbjct: 44 CGKSTFLR-TLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLM 102
Query: 394 EFYSRVRNLPSV-------LLNTIVNESLNKFALGHYS----DREVRTLSGGNKRKLSTA 442
Y + P + L+ IV +SL K AL + + +LSGG +++L A
Sbjct: 103 SIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIA 162
Query: 443 IALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTI 502
L +I +DEPTS +DP + + I + E +I+ +HNM++ + +
Sbjct: 163 RTLAIEPNVILMDEPTSALDPISTGKIEELIIN-LKESYTIIIVTHNMQQAGRISDRTAF 221
Query: 503 MVNGQ 507
+NG
Sbjct: 222 FLNGC 226
Score = 43.5 bits (102), Expect = 1e-04
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 276 VPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIA 335
+ + +++DEPTS +DP S I EL+I + T+I+ TH M +A + DR A
Sbjct: 167 IEPNVILMDEPTSALDPISTGKIEELIINLK------ESYTIIIVTHNMQQAGRISDRTA 220
Query: 336 IIAAGKLQ 343
G ++
Sbjct: 221 FFLNGCIE 228
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 50.7 bits (122), Expect = 1e-06
Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 488
LSGG ++L+ A ALL L+ LDEPT+ +D + + ++ ++ + V++ +H
Sbjct: 455 AGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQEL-AKQKTVLVITH 513
Query: 489 NMEECEALCTKLTIMVNGQFTCLGSATHLKSKYG 522
+E+ A ++ ++ NG+ G+ L K G
Sbjct: 514 RLEDA-ADADRIVVLDNGRLVEQGTHEELSEKQG 546
Score = 41.1 bits (97), Expect = 0.001
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLG-DRIA 335
PAS ++LDEPT+ +D + + I + L + +TV++ TH D DRI
Sbjct: 474 PASLLLLDEPTAHLDAETEQIILQALQE------LAKQKTVLVITH--RLEDAADADRIV 525
Query: 336 IIAAGKLQCCGS 347
++ G+L G+
Sbjct: 526 VLDNGRLVEQGT 537
Score = 31.5 bits (72), Expect = 1.5
Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 25/110 (22%)
Query: 99 SMLMGMLPVSSGTAKIYDHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFY----- 152
++L+G L + G ++ D+R R+ + Q N T+ E++
Sbjct: 365 NLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQ-NPYLFAGTIRENILLARPDAS 423
Query: 153 -SQLKQVPKDLAQLEISN-------MIGDLGIPHKRTSLANTLSGG-MQR 193
++ LE +IG+ G LSGG QR
Sbjct: 424 DEEIIAALDQAGLLEFVPKPDGLDTVIGEGG---------AGLSGGQAQR 464
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 49.5 bits (118), Expect = 1e-06
Identities = 45/166 (27%), Positives = 70/166 (42%), Gaps = 17/166 (10%)
Query: 331 GDRIAIIAAGKLQCCGSSVFLK-----NSFARG--YYLSLDMKSAPQKSY---IGYCPQF 380
G+ IAI CG S LK S G + D+ + ++Y + YC Q
Sbjct: 29 GEFIAITGPSG---CGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQT 85
Query: 381 DALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYS-DREVRTLSGGNKRKL 439
AL T ++L F ++RN + L +FAL + + LSGG K+++
Sbjct: 86 PALFGD-TVEDNLIFPWQIRN--RRPDRAAALDLLARFALPDSILTKNITELSGGEKQRI 142
Query: 440 STAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL 485
+ L ++ LDE TS +D +R + I R V E +L
Sbjct: 143 ALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVL 188
Score = 37.1 bits (86), Expect = 0.015
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 273 MSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGD 332
+ F+P ++LDE TS +D ++R+I E++ + Y + V+ TH D+A D
Sbjct: 148 LQFMPK-ILLLDEITSALDESNKRNIEEMIHR-YVREQN---VAVLWITHDKDQAIRHAD 202
Query: 333 RIAIIAAGKL 342
++ + G
Sbjct: 203 KVITLQPGHA 212
>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 49.8 bits (119), Expect = 1e-06
Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 5/104 (4%)
Query: 407 LNTIVNESLNKFAL----GHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
++ V ESL + AL D LSGG +++L A A+ + +I +DEP S +D
Sbjct: 153 IDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALD 212
Query: 463 PGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNG 506
P A + IE E VI+T HNM++ + K + + G
Sbjct: 213 PVATSKIEDLIEELAEEYTVVIVT-HNMQQAARISDKTAVFLTG 255
Score = 36.7 bits (85), Expect = 0.028
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 13/73 (17%)
Query: 272 AMSFVPASTVIL-DEPTSGVDPYSRRSIWEL---LIKVYYASHSLSGRTVILTTHYMDEA 327
A + P VIL DEP S +DP + I +L L + Y TV++ TH M +A
Sbjct: 192 ARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEY---------TVVIVTHNMQQA 242
Query: 328 DLLGDRIAIIAAG 340
+ D+ A+ G
Sbjct: 243 ARISDKTAVFLTG 255
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 49.7 bits (119), Expect = 2e-06
Identities = 29/98 (29%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDP-GARRFL 469
V E+L + + ++ LSGG K++++ A L +I LDEPTSG+DP GA + +
Sbjct: 118 VKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIM 177
Query: 470 WTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 507
+ EG +I+++H+++ K+ +M +G+
Sbjct: 178 KLLYDLN-KEGITIIISTHDVDLVPVYADKVYVMSDGK 214
Score = 48.5 bits (116), Expect = 4e-06
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 12/80 (15%)
Query: 265 VAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLS--GRTVILTTH 322
VA+ + AM ++LDEPTSG+DP I +LL + L+ G T+I++TH
Sbjct: 146 VAIAGILAMK---PEIIVLDEPTSGLDPMGASQIMKLL-------YDLNKEGITIIISTH 195
Query: 323 YMDEADLLGDRIAIIAAGKL 342
+D + D++ +++ GK+
Sbjct: 196 DVDLVPVYADKVYVMSDGKI 215
>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter
proteins. ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterized by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins.
Length = 162
Score = 47.7 bits (114), Expect = 2e-06
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 431 LSGGNKRKLSTAIAL----LGNTPLIFLDEPTSGMDP-GARRFLWTCIERAVSEGRCVIL 485
LSGG K + A+ L L PL LDE G+DP + +E V +G VI+
Sbjct: 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLV-KGAQVIV 136
Query: 486 TSHNME 491
+H E
Sbjct: 137 ITHLPE 142
Score = 46.6 bits (111), Expect = 5e-06
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 259 AGTSILVAVTVLFA-MSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTV 317
G L A+ ++ A S P ILDE G+DP +++ E +++ H + G V
Sbjct: 80 GGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILE-----HLVKGAQV 134
Query: 318 ILTTHYMDEADLLGDRIAII 337
I+ TH + A+L D++ I
Sbjct: 135 IVITHLPELAELA-DKLIHI 153
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 49.1 bits (118), Expect = 2e-06
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 1/108 (0%)
Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW 470
V E L L +D LSGG K+++ A AL N ++ DE TS +DP + +
Sbjct: 121 VLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSIL 180
Query: 471 TCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 517
+ E G ++L +H ME + +C ++ +M G+ G+ +
Sbjct: 181 ALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV 228
Score = 45.3 bits (108), Expect = 3e-05
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 284 DEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKL 342
DE TS +DP + +SI LL + + G T++L TH M+ + DR+A++ G++
Sbjct: 165 DEATSALDPETTQSILALLRDI----NRELGLTIVLITHEMEVVKRICDRVAVMEKGEV 219
Score = 29.9 bits (68), Expect = 3.5
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 108 SSGTAKIYDHDI----RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLA 163
+SG+ + D+ ++ RR +G+ Q+ L TV E++ ++ VPK
Sbjct: 58 TSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEI 117
Query: 164 QLEISNMIGDLGIPHKRTSLANTLSGGM-QR 193
+ + ++ +G+ K + LSGG QR
Sbjct: 118 EERVLELLELVGLEDKADAYPAQLSGGQKQR 148
>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 242
Score = 49.1 bits (118), Expect = 2e-06
Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Query: 387 LTPREHLEF-YSRVRNLPSVLLNTI-------VNESLNKFALGHYSDREVRTLSGGNKRK 438
LT E+LE R +++ + L + + E L L +DR LS G K+
Sbjct: 92 LTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQW 151
Query: 439 LSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCT 498
L + L+ + L+ LDEP +GM + ++++ V++ H+ME ++
Sbjct: 152 LEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELL-KSLAGKHSVVVVEHDMEFVRSIAD 210
Query: 499 KLTIMVNGQFTCLGSATHLKS 519
K+T++ G GS +++
Sbjct: 211 KVTVLHQGSVLAEGSLDQVQA 231
Score = 32.1 bits (74), Expect = 0.54
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 283 LDEPTSGVDPYSRRSIWELLIKVYYASHSLSG-RTVILTTHYMDEADLLGDRIAIIAAGK 341
LDEP +G+ ELL SL+G +V++ H M+ + D++ ++ G
Sbjct: 167 LDEPVAGMTDEETEKTAELL-------KSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGS 219
Query: 342 LQCCGS 347
+ GS
Sbjct: 220 VLAEGS 225
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 49.0 bits (117), Expect = 2e-06
Identities = 28/108 (25%), Positives = 54/108 (50%)
Query: 410 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFL 469
+V+ +L + L H +DR++ TLSGG ++++ A AL L+ LDEPT+ +D A+
Sbjct: 117 VVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLET 176
Query: 470 WTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 517
+ + G V+ H++ + C + ++ G+ G +
Sbjct: 177 LALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREV 224
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2 [Energy
metabolism, Methanogenesis].
Length = 520
Score = 50.2 bits (120), Expect = 2e-06
Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 3/109 (2%)
Query: 420 LGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFL-DEPTSGMDPGARRFLWTCIERAV- 477
L H R LSGG K+++ A L P +FL DEPT +DP + + +E AV
Sbjct: 158 LSHRITHIARDLSGGEKQRVVLARQLAKE-PFLFLADEPTGTLDPQTAKLVHNALEEAVK 216
Query: 478 SEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYS 526
+ G ++LTSH E E L K + NG+ G+ + + + +G S
Sbjct: 217 ASGISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAVFMEGVS 265
Score = 48.3 bits (115), Expect = 9e-06
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCV 483
D+ LS G + +++ A L+ ++ LDEPT MDP + + I +A E +
Sbjct: 422 DKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTF 481
Query: 484 ILTSHNMEECEALCTKLTIMVNGQFTCLG 512
I+ SH+M+ +C + +M +G+ +G
Sbjct: 482 IIVSHDMDFVLDVCDRAALMRDGKIVKIG 510
Score = 39.4 bits (92), Expect = 0.005
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
VILDEPT +DP ++ + ++K A + +T I+ +H MD + DR A++ G
Sbjct: 449 VILDEPTGTMDPITKVDVTHSILK---AREEM-EQTFIIVSHDMDFVLDVCDRAALMRDG 504
Query: 341 KL 342
K+
Sbjct: 505 KI 506
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 48.7 bits (116), Expect = 2e-06
Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 1/131 (0%)
Query: 387 LTPREHL-EFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIAL 445
LT +E+L E RV L + L + L Y+DR LSGG +++++ A AL
Sbjct: 97 LTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARAL 156
Query: 446 LGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVN 505
+ ++ DEPT+ +DP + + I+ G ++ +H +E +++ M N
Sbjct: 157 MMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMEN 216
Query: 506 GQFTCLGSATH 516
G G A+
Sbjct: 217 GHIVEQGDASC 227
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 48.3 bits (115), Expect = 2e-06
Identities = 34/128 (26%), Positives = 51/128 (39%), Gaps = 13/128 (10%)
Query: 366 KSAPQKSYIGYCPQFDALNDRLTPREHLEFYS-----RVRNLPSVLLNTIVNESLNKFAL 420
+ ++ Y L L+ E+L F R + +P L IV L
Sbjct: 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSAL-AIV-------GL 127
Query: 421 GHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEG 480
Y D VR LS G K++L+ A L PL LDEP + +D + I + G
Sbjct: 128 AGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGG 187
Query: 481 RCVILTSH 488
++T+H
Sbjct: 188 GAALVTTH 195
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 48.9 bits (117), Expect = 2e-06
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 413 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTC 472
L SDR + LSGG ++ LS +A L ++ LDE T+ +DP F+
Sbjct: 132 ARLGLGLENRLSDR-IGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMEL 190
Query: 473 IERAVSEGR-CVILTSHNMEECEALCTKLTIMVNGQ 507
+ V E + ++ +HNME+ +L ++ +G+
Sbjct: 191 TAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGK 226
Score = 29.2 bits (66), Expect = 5.9
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 269 VLFAMS-FVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEA 327
+ M+ P ++LDE T+ +DP + + EL K+ H L T ++ TH M++A
Sbjct: 157 LSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIV-EEHKL---TTLMVTHNMEDA 212
Query: 328 DLLGDRIAIIAAGK 341
G+R+ ++ +GK
Sbjct: 213 LDYGNRLIMLHSGK 226
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 48.8 bits (117), Expect = 2e-06
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
LSGG K++++ A A+L N P++ LDE TS +D R + + VS+GR I+ +H +
Sbjct: 138 LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRD-VSKGRTTIVIAHRL 196
Score = 36.1 bits (84), Expect = 0.034
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 107 VSSGTAKIYDHDIRT-DMTTIRRSLGVCPQYNALFD 141
VSSG+ I DIR + ++RR++GV PQ LF+
Sbjct: 53 VSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFN 88
Score = 33.0 bits (76), Expect = 0.31
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTH 322
++LDE TS +D ++ R I L V GRT I+ H
Sbjct: 159 LLLDEATSALDTHTEREIQAALRDV------SKGRTTIVIAH 194
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 48.9 bits (117), Expect = 3e-06
Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 22/118 (18%)
Query: 410 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIAL------LGNTPLIFLDEPTSGMDP 463
I ++L L + R+ RTLSGG ++++ A L + + +FLDEPTS +D
Sbjct: 115 IAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDI 174
Query: 464 G--------ARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 513
AR+ E +L H++ ++ ++ G+ GS
Sbjct: 175 AHQHHTLRLARQL---AREGG---AVLAVL--HDLNLAAQYADRIVLLHQGRVIASGS 224
Score = 35.8 bits (83), Expect = 0.051
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 9/68 (13%)
Query: 283 LDEPTSGVDPYSRRSIWELLIKVYYASHSLS--GRTVILTTHYMDEADLLGDRIAIIAAG 340
LDEPTS +D + L L+ G V+ H ++ A DRI ++ G
Sbjct: 165 LDEPTSALDIAHQHHTLRLA-------RQLAREGGAVLAVLHDLNLAAQYADRIVLLHQG 217
Query: 341 KLQCCGSS 348
++ GS
Sbjct: 218 RVIASGSP 225
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 500
Score = 49.8 bits (119), Expect = 3e-06
Identities = 27/77 (35%), Positives = 44/77 (57%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
LSGGN++K A LL N ++ LDEPT G+D GA+ ++ I + EG +I+ S +
Sbjct: 404 LSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSEL 463
Query: 491 EECEALCTKLTIMVNGQ 507
E L ++ ++ G+
Sbjct: 464 AEVLGLSDRVLVIGEGK 480
Score = 43.3 bits (102), Expect = 3e-04
Identities = 23/82 (28%), Positives = 38/82 (46%)
Query: 426 REVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL 485
R V GG ++ + A AL L+ LDEP+S + L I + G +
Sbjct: 137 RPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVY 196
Query: 486 TSHNMEECEALCTKLTIMVNGQ 507
SH + E +A+C + ++ +GQ
Sbjct: 197 ISHKLNEVKAVCDTICVIRDGQ 218
Score = 35.6 bits (82), Expect = 0.073
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 269 VLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEAD 328
VL M +ILDEPT GVD ++ I++L+ ++ + G +I+ + + E
Sbjct: 413 VLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQL-----AQEGVAIIVVSSELAEVL 467
Query: 329 LLGDRIAIIAAGKLQ 343
L DR+ +I GKL+
Sbjct: 468 GLSDRVLVIGEGKLK 482
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides
excreted by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and a
cytoplasmic membrane protein MPA2.
Length = 224
Score = 47.9 bits (115), Expect = 4e-06
Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 8/130 (6%)
Query: 382 ALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFA-LGHYSDREVRTLSGGNKRKLS 440
N LT RE++ R+ L ++ ++E + F+ LG + D V+T S G K +L+
Sbjct: 94 GFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIE-FSELGDFIDLPVKTYSSGMKARLA 152
Query: 441 TAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIER---AVSEGRCVILTSHNMEECEALC 497
AIA ++ +DE + D F C R + +G+ VIL SH+ + LC
Sbjct: 153 FAIATALEPDILLIDEVLAVGD---AAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLC 209
Query: 498 TKLTIMVNGQ 507
+ ++ G+
Sbjct: 210 DRALVLEKGK 219
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 48.3 bits (115), Expect = 5e-06
Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 20/108 (18%)
Query: 249 KQMALETLKKAGTSILVA--------------VTVLFAMSFVPASTVILDEPTSGVDPYS 294
K+ AL+ LKK G S + V + M++ P + LDEP +G+DP
Sbjct: 122 KEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEP-EILCLDEPAAGLDPEG 180
Query: 295 RRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKL 342
R+ + +L A H TVIL TH MD+ D + ++ GKL
Sbjct: 181 RKEMMQLFKDYQKAGH-----TVILVTHNMDDVAEYADDVLVLEHGKL 223
Score = 47.5 bits (113), Expect = 9e-06
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIF-LDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 489
LSGG R+++ A ++ P I LDEP +G+DP R+ + + G VIL +HN
Sbjct: 146 LSGGQMRRVAIA-GVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHN 204
Query: 490 MEE 492
M++
Sbjct: 205 MDD 207
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 48.4 bits (116), Expect = 5e-06
Identities = 41/142 (28%), Positives = 72/142 (50%), Gaps = 2/142 (1%)
Query: 368 APQKSYIGYCPQFDALNDRLTPREHLEFYSRVRN-LPSVLLNTIVNESLNKFALGHYSDR 426
P+K IG Q AL +T E++ F +VR L + V E+L L ++DR
Sbjct: 73 PPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADR 132
Query: 427 EVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVIL 485
+ LSGG +++++ A AL+ ++ LDEP S +D R + ++ E G +
Sbjct: 133 KPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVY 192
Query: 486 TSHNMEECEALCTKLTIMVNGQ 507
+H+ EE A+ ++ +M +G+
Sbjct: 193 VTHDQEEALAMSDRIAVMNDGR 214
Score = 41.9 bits (99), Expect = 8e-04
Identities = 37/115 (32%), Positives = 54/115 (46%), Gaps = 10/115 (8%)
Query: 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNA 138
LGPSG G TL L M+ G SSG + DI TD+ +R +G+ Q A
Sbjct: 37 LGPSGC--GKTTL-L-----RMIAGFEQPSSGEILLDGEDI-TDVPPEKRPIGMVFQSYA 87
Query: 139 LFDKLTVEEHMWF-YSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQ 192
LF +TVEE++ F K++ K + + + +G+ + LSGG Q
Sbjct: 88 LFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQ 142
Score = 38.4 bits (90), Expect = 0.009
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 269 VLFAMSFVPASTVIL-DEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEA 327
V A + VP V+L DEP S +D R + + L ++ G T + TH +EA
Sbjct: 145 VALARALVPEPKVLLLDEPLSALDAKLREQMRKELKEL----QRELGITFVYVTHDQEEA 200
Query: 328 DLLGDRIAIIAAGKLQCCGS 347
+ DRIA++ G+++ G+
Sbjct: 201 LAMSDRIAVMNDGRIEQVGT 220
>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette
domain 1 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI s are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLIs have an N-terminal Fe-S domain and
two nucleotide binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 255
Score = 47.7 bits (114), Expect = 6e-06
Identities = 22/79 (27%), Positives = 39/79 (49%)
Query: 412 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWT 471
+E +++ L H DR + LSGG ++++ A AL + F DEP+S +D R
Sbjct: 121 DELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAAR 180
Query: 472 CIERAVSEGRCVILTSHNM 490
I + V++ H++
Sbjct: 181 LIRELAEDDNYVLVVEHDL 199
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 47.4 bits (113), Expect = 6e-06
Identities = 40/171 (23%), Positives = 71/171 (41%), Gaps = 28/171 (16%)
Query: 100 MLMGMLPVSSGTAKIYDHDI----RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQL 155
++ +SGT ++ D+ + +RR +GV Q L V E++ F ++
Sbjct: 46 LIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEV 105
Query: 156 KQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMN 215
VP + + + +G+ HK +L LSGG Q+++ A++
Sbjct: 106 TGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRV--------------AIARAI 151
Query: 216 AANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVA 266
+ IL A P+ D MNL L+ + KAGT+++VA
Sbjct: 152 VNSPTILIADEPTGNLDPDTT----WEIMNL------LKKINKAGTTVVVA 192
Score = 42.0 bits (99), Expect = 4e-04
Identities = 24/105 (22%), Positives = 47/105 (44%)
Query: 387 LTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL 446
E++ F V +P + V +L L H LSGG +++++ A A++
Sbjct: 93 RNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIV 152
Query: 447 GNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 491
+ ++ DEPT +DP + +++ G V++ +H E
Sbjct: 153 NSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE 197
Score = 34.3 bits (79), Expect = 0.10
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 279 STVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIA 338
+ +I DEPT +DP + I LL K+ + +G TV++ TH + D R+ +
Sbjct: 156 TILIADEPTGNLDPDTTWEIMNLLKKI-----NKAGTTVVVATHAKELVDTTRHRVIALE 210
Query: 339 AGKL 342
GKL
Sbjct: 211 RGKL 214
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 48.4 bits (116), Expect = 7e-06
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 488
LSGG ++L+ A A L + PL+ LDEPT+ +D + RA+++GR V+L +H
Sbjct: 459 LSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEV-LEALRALAQGRTVLLVTH 515
Score = 34.6 bits (80), Expect = 0.16
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTH 322
A ++LDEPT+ +D + + E L + GRTV+L TH
Sbjct: 476 DAPLLLLDEPTAHLDAETEAEVLEALRAL------AQGRTVLLVTH 515
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 47.3 bits (113), Expect = 7e-06
Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 9/100 (9%)
Query: 413 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARR----- 467
+L + L + + LSGG +++++ A AL LI DEP + +DP +
Sbjct: 128 SALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDY 187
Query: 468 FLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 507
E +G VI+ H ++ + ++ + G+
Sbjct: 188 LKRINKE----DGITVIINLHQVDLAKKYADRIVGLKAGE 223
Score = 35.4 bits (82), Expect = 0.050
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 16/106 (15%)
Query: 249 KQMALETLKKAGTSILVAVT-----------VLFAMSFVPASTVIL-DEPTSGVDPYSRR 296
K+ AL L++ G + V A + +IL DEP + +DP + +
Sbjct: 123 KERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSK 182
Query: 297 SIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKL 342
+ + L ++ + G TVI+ H +D A DRI + AG++
Sbjct: 183 QVMDYLKRI----NKEDGITVIINLHQVDLAKKYADRIVGLKAGEI 224
Score = 30.0 bits (68), Expect = 3.1
Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 42/153 (27%)
Query: 68 GISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDI-- 119
+ + +L P +GPSG G TL L ++R ++ SSG+ + DI
Sbjct: 17 ALKNINLNINPGEFVAIIGPSGA--GKSTL-LRCINR-----LVEPSSGSILLEGTDITK 68
Query: 120 --RTDMTTIRRSLGVCPQYNALFDKLTVEEHM----------------WFYSQLKQVPKD 161
+ +RR +G+ Q+ L ++LTV E++ F + K+ +
Sbjct: 69 LRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKE--RA 126
Query: 162 LAQLEISNMIGDLGIPHKRTSLANTLSGGMQRK 194
L+ LE +G+ K A+ LSGG Q++
Sbjct: 127 LSALE------RVGLADKAYQRADQLSGGQQQR 153
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 47.5 bits (113), Expect = 7e-06
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 400 RNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTS 459
R +P + IV + L + Y D E LSGG K++++ A L +I LDE TS
Sbjct: 113 RAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTS 172
Query: 460 GMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECE 494
+DP + + I + + VI +H+++E
Sbjct: 173 MLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN 208
Score = 38.6 bits (90), Expect = 0.006
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
+ILDE TS +DP + I +L+ K+ + TVI TH +DEA+ + D++ ++ G
Sbjct: 165 IILDESTSMLDPAGKEQILKLIRKL----KKKNNLTVISITHDIDEAN-MADQVLVLDDG 219
Query: 341 KLQCCGSSV 349
KL GS V
Sbjct: 220 KLLAQGSPV 228
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 47.6 bits (114), Expect = 8e-06
Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHN 489
LSGG ++++ A+AL N L+ DEPT+ +D + + ++ E G +IL +H+
Sbjct: 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHD 213
Query: 490 MEECEALCTKLTIMVNGQ 507
+ + ++ +M G+
Sbjct: 214 LGVVAEIADRVAVMYAGR 231
Score = 43.3 bits (103), Expect = 2e-04
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 269 VLFAMSFV--PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDE 326
V+ AM+ P +I DEPT+ +D + I +LL ++ G +IL TH +
Sbjct: 162 VMIAMALALNP-KLLIADEPTTALDVTVQAQILDLLKEL----QREKGTALILITHDLGV 216
Query: 327 ADLLGDRIAIIAAGKL 342
+ DR+A++ AG++
Sbjct: 217 VAEIADRVAVMYAGRI 232
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 46.5 bits (111), Expect = 9e-06
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
Query: 100 MLMGMLPVSSGTAKIYDHDIRT----DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQL 155
+L G L S G +I D+ + +RR +GV Q L TV E++ ++
Sbjct: 47 LLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEV 106
Query: 156 KQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRK 194
+ + Q + + +G+ HK + LSGG Q++
Sbjct: 107 RGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQR 145
Score = 46.5 bits (111), Expect = 1e-05
Identities = 26/94 (27%), Positives = 47/94 (50%)
Query: 398 RVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEP 457
VR + V +L + L H +D LSGG +++++ A A++ + PL+ DEP
Sbjct: 105 EVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEP 164
Query: 458 TSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 491
T +DP + ++R G VI+ +H++
Sbjct: 165 TGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS 198
Score = 36.8 bits (86), Expect = 0.015
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
++ DEPT +DP I +LL ++ + G TVI+ TH + D + R+ I+ G
Sbjct: 159 LLADEPTGNLDPDLSERILDLLKRL-----NKRGTTVIVATHDLSLVDRVAHRVIILDDG 213
Query: 341 K 341
+
Sbjct: 214 R 214
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 47.2 bits (112), Expect = 9e-06
Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 407 LNTIVNESLNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
L IV +SL AL DR + +LSGG +++L A AL N ++ +DEPTS +D
Sbjct: 128 LQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALD 187
Query: 463 PGARRFLWTCIERAVSEGRCVILTSHNMEE 492
P + R + I + + E +++ +HNM++
Sbjct: 188 PVSTRKIEELILK-LKEKYTIVIVTHNMQQ 216
Score = 46.1 bits (109), Expect = 2e-05
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
+++DEPTS +DP S R I EL++K+ T+++ TH M +A + D+ A G
Sbjct: 177 LLMDEPTSALDPVSTRKIEELILKLK------EKYTIVIVTHNMQQAARVSDQTAFFYMG 230
Query: 341 KLQCCGSSV 349
+L C +
Sbjct: 231 ELVECNDTN 239
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 47.9 bits (114), Expect = 9e-06
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW 470
V+E L L ++DR+ LSGG ++++ A A P++ +DEP S +DP R L
Sbjct: 145 VDEQLELVGLAQWADRKPGELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQ 204
Query: 471 -TCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNG 506
+E + ++ SH+++E + ++ IM G
Sbjct: 205 DELLELQSKLKKTIVFVSHDLDEALKIGNRIAIMEGG 241
Score = 44.4 bits (105), Expect = 1e-04
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 271 FAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLL 330
FA A +++DEP S +DP R + + L+++ S +T++ +H +DEA +
Sbjct: 179 FATE---APILLMDEPFSALDPLIRTQLQDELLEL----QSKLKKTIVFVSHDLDEALKI 231
Query: 331 GDRIAIIAAGKLQCCGS 347
G+RIAI+ G++ G+
Sbjct: 232 GNRIAIMEGGRIIQHGT 248
Score = 30.5 bits (69), Expect = 2.8
Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 25/123 (20%)
Query: 91 LGLEFVSRSMLM----GMLPVSSGTAKIYDHD-----IRTDMTTIRR----SLGVCPQYN 137
+GL +S L+ G+ PVS G+ + D D D T+RR + + Q
Sbjct: 56 MGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLRRLRTHRVSMVFQQF 115
Query: 138 ALFDKLTVEEHMWFYSQLKQVPK----DLA--QLEISNMIGDLGIPHKRTSLANTLSGGM 191
AL TVEE++ F +++ +PK QLE+ +G+ LSGGM
Sbjct: 116 ALLPWRTVEENVAFGLEMQGMPKAERRKRVDEQLEL------VGLAQWADRKPGELSGGM 169
Query: 192 QRK 194
Q++
Sbjct: 170 QQR 172
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 47.9 bits (114), Expect = 1e-05
Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 1/133 (0%)
Query: 382 ALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLST 441
AL +T +++ F + LP + + VNE L + ++ R+ LSGG +++++
Sbjct: 101 ALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVAL 160
Query: 442 AIALLGNTPLIFLDEPTSGMDPGAR-RFLWTCIERAVSEGRCVILTSHNMEECEALCTKL 500
A +L L+ LDEP +D R R ++ G ++ +H+ EE + ++
Sbjct: 161 ARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRI 220
Query: 501 TIMVNGQFTCLGS 513
IM G+F +G
Sbjct: 221 AIMNRGKFVQIGE 233
Score = 29.4 bits (66), Expect = 5.0
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 22/122 (18%)
Query: 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNA 138
LG SG G TL ML G ++G + D+ + + +R + + Q A
Sbjct: 51 LGASGC--GKSTL------LRMLAGFEQPTAGQIMLDGVDL-SHVPPYQRPINMMFQSYA 101
Query: 139 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGD-LGIPH-----KRTSLANTLSGGMQ 192
LF +TVE+++ F LKQ L + EI++ + + LG+ H KR + LSGG Q
Sbjct: 102 LFPHMTVEQNIAF--GLKQ--DKLPKAEIASRVNEMLGLVHMQEFAKRKP--HQLSGG-Q 154
Query: 193 RK 194
R+
Sbjct: 155 RQ 156
Score = 29.0 bits (65), Expect = 8.0
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 12/65 (18%)
Query: 281 VILDEPTSGVDPYSRR----SIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAI 336
++LDEP +D R + ++L +V G T ++ TH +EA + RIAI
Sbjct: 171 LLLDEPMGALDKKLRDRMQLEVVDILERV--------GVTCVMVTHDQEEAMTMAGRIAI 222
Query: 337 IAAGK 341
+ GK
Sbjct: 223 MNRGK 227
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 47.0 bits (112), Expect = 1e-05
Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 15/112 (13%)
Query: 380 FDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKL 439
F +N L E + V E+L + + D+ LS G K+++
Sbjct: 103 FGPVNMGLDKDE---------------VERRVEEALKAVRMWDFRDKPPYHLSYGQKKRV 147
Query: 440 STAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 491
+ A L + +I LDEP + +DP + L ++R ++G+ VI+ +H+++
Sbjct: 148 AIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD 199
Score = 45.9 bits (109), Expect = 3e-05
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 8/89 (8%)
Query: 265 VAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYM 324
VA+ + AM P ++LDEP + +DP + ++ E+L +++ G+TVI+ TH +
Sbjct: 147 VAIAGVLAM--DP-DVIVLDEPMAYLDPRGQETLMEILDRLHNQ-----GKTVIVATHDV 198
Query: 325 DEADLLGDRIAIIAAGKLQCCGSSVFLKN 353
D A D++ ++ G++ G L +
Sbjct: 199 DLAAEWADQVIVLKEGRVLAEGDKSLLTD 227
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 48.6 bits (116), Expect = 1e-05
Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 8/123 (6%)
Query: 374 IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLL---NTIVNESLNKFALGHYSDREVRT 430
IGY Q D T RE L F + +R SV V E + + Y+D V
Sbjct: 838 IGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGV 897
Query: 431 ----LSGGNKRKLSTAIALLGNTP-LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL 485
L+ +++L+ + L+ L+FLDEPTSG+D + + + G+ ++
Sbjct: 898 PGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILC 957
Query: 486 TSH 488
T H
Sbjct: 958 TIH 960
Score = 37.4 bits (87), Expect = 0.026
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 10/59 (16%)
Query: 277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTH-----YMDEADLL 330
P + LDEPTSG+D + SI +L+ K+ A H G+ ++ T H +E D L
Sbjct: 920 PKLLLFLDEPTSGLDSQTAWSICKLMRKL--ADH---GQAILCTIHQPSAILFEEFDRL 973
Score = 37.0 bits (86), Expect = 0.030
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 13/100 (13%)
Query: 376 YCPQFDALNDRLTPREHLEFYSRVR---NLPSVL-----LNTIVNESLNKFALGHYSDRE 427
Y + D LT E L+F +R + N P + I + + + L H + +
Sbjct: 142 YNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTK 201
Query: 428 V-----RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
V R +SGG ++++S A A LG + D T G+D
Sbjct: 202 VGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLD 241
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 47.9 bits (115), Expect = 1e-05
Identities = 25/82 (30%), Positives = 43/82 (52%)
Query: 428 VRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTS 487
R+LSGGN++KL A L L+ +PT G+D GA F+ + G+ V+L S
Sbjct: 401 ARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLIS 460
Query: 488 HNMEECEALCTKLTIMVNGQFT 509
+++E L ++ ++ G+
Sbjct: 461 EDLDEILELSDRIAVIYEGRIV 482
Score = 46.4 bits (111), Expect = 3e-05
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPG-ARRFLWTCIERAVSEGRCV 483
D +V LS G ++++ AL L+ LDEPT+ + P A + R +EG+ +
Sbjct: 135 DAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEI-LRRLAAEGKTI 193
Query: 484 ILTSHNMEECEALCTKLTIMVNG 506
I +H ++E A+ ++T++ G
Sbjct: 194 IFITHKLKEVMAIADRVTVLRRG 216
Score = 37.9 bits (89), Expect = 0.016
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 281 VILDEPTSGVDPYSRRSIWELL--IKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIA 338
+ILDEPT+ + P + EL ++ A G+T+I TH + E + DR+ ++
Sbjct: 162 LILDEPTAVLTP---QEADELFEILRRLAAE----GKTIIFITHKLKEVMAIADRVTVLR 214
Query: 339 AGK 341
GK
Sbjct: 215 RGK 217
Score = 31.7 bits (73), Expect = 1.0
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
+I +PT G+D + I E L+++ +G+ V+L + +DE L DRIA+I G
Sbjct: 425 LIAAQPTRGLDVGAIEFIHERLLEL-----RDAGKAVLLISEDLDEILELSDRIAVIYEG 479
Query: 341 KLQ 343
++
Sbjct: 480 RIV 482
>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50. The
catalytic domains of Rad50 are similar to the
ATP-binding cassette of ABC transporters, but are not
associated with membrane-spanning domains. The conserved
ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence.
Length = 204
Score = 46.4 bits (111), Expect = 1e-05
Identities = 28/116 (24%), Positives = 41/116 (35%), Gaps = 21/116 (18%)
Query: 392 HLEFYSR------VRNLPSVLLNTIV--NESLNKFALGHYSDREVRTLSGGNKRKLSTAI 443
L F + + ++L N I N L SGG K S I
Sbjct: 74 KLAFENANGKKYTITRSLAILENVIFCHQGESNWPLL-----DMRGRCSGGEKVLASLII 128
Query: 444 ALL------GNTPLIFLDEPTSGMDPGARRF-LWTCIE-RAVSEGRCVILTSHNME 491
L N ++ LDEPT+ +D L IE R + +I+ +H+ E
Sbjct: 129 RLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE 184
Score = 32.6 bits (75), Expect = 0.41
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 10/70 (14%)
Query: 258 KAGTSILVAVTVLFAMSF-VPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRT 316
A I +A+ A +F + LDEPT+ +D + E L ++ S
Sbjct: 123 LASLIIRLAL----AETFGSNCGILALDEPTTNLDEENIE---ESLAEIIEERKSQKNFQ 175
Query: 317 VILTTHYMDE 326
+I+ TH DE
Sbjct: 176 LIVITH--DE 183
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 46.6 bits (111), Expect = 1e-05
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 8/133 (6%)
Query: 378 PQFDAL-NDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNK 436
P AL N P RVR E L K L + LSGG +
Sbjct: 90 PHLTALENVMFGPL-------RVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQ 142
Query: 437 RKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEAL 496
++++ A AL L+ DEPTS +DP R + ++ EG +++ +H + E +
Sbjct: 143 QRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKV 202
Query: 497 CTKLTIMVNGQFT 509
++L + G+
Sbjct: 203 ASRLIFIDKGRIA 215
Score = 32.0 bits (73), Expect = 0.72
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLS--GRTVILTTHYMDEADLLGDRIAIIAA 339
+ DEPTS +DP EL +V L+ G T+++ TH + A+ + R+ I
Sbjct: 159 LFDEPTSALDP-------ELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDK 211
Query: 340 GKL 342
G++
Sbjct: 212 GRI 214
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 46.3 bits (111), Expect = 1e-05
Identities = 26/103 (25%), Positives = 46/103 (44%)
Query: 415 LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIE 474
L K L +D LSGG +++++ A AL + ++ DEPTS +DP + ++
Sbjct: 121 LEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMK 180
Query: 475 RAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 517
EG +I+ +H M + ++ M G+ G
Sbjct: 181 DLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEF 223
Score = 42.5 bits (101), Expect = 3e-04
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 281 VIL-DEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAA 339
V+L DEPTS +DP + +++ + + G T+I+ TH M A + DR+ +
Sbjct: 157 VMLFDEPTSALDPELVGEVLDVMKDL-----AEEGMTMIIVTHEMGFAREVADRVIFMDQ 211
Query: 340 GKLQCCGSS 348
GK+ G
Sbjct: 212 GKIIEEGPP 220
Score = 34.8 bits (81), Expect = 0.096
Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 29/126 (23%)
Query: 79 LGPSG---ITLGLHTL-GLEFVSRSMLMGMLPVSSGTAKIYDHDI--RTDMTTIRRSLGV 132
+GPSG TL L L GLE SG+ + D+ + D+ +RR +G+
Sbjct: 34 IGPSGSGKSTL-LRCLNGLE-----------EPDSGSITVDGEDVGDKKDILKLRRKVGM 81
Query: 133 CPQ-YNALFDKLTVEEH-----MWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANT 186
Q +N LF LTV E+ + +K++ K A+ + ++ +G+ K +
Sbjct: 82 VFQQFN-LFPHLTVLENVTLAPVK----VKKLSKAEAREKALELLEKVGLADKADAYPAQ 136
Query: 187 LSGGMQ 192
LSGG Q
Sbjct: 137 LSGGQQ 142
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se [Central intermediary metabolism,
Phosphorus compounds].
Length = 253
Score = 46.4 bits (110), Expect = 2e-05
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCV 483
D R SGG +++L A L+ L+F+DEPT G+D + L + V + G V
Sbjct: 143 DDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAV 202
Query: 484 ILTSHNMEECEALCTKLTIMVNGQ 507
I+ +H++ L +L +M G+
Sbjct: 203 IIVTHDLGVARLLAQRLLVMQQGR 226
Score = 28.6 bits (64), Expect = 8.4
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
V +DEPT G+D + + +LL + G VI+ TH + A LL R+ ++ G
Sbjct: 170 VFMDEPTGGLDVSVQARLLDLLRGLVRDL----GLAVIIVTHDLGVARLLAQRLLVMQQG 225
Query: 341 KL 342
++
Sbjct: 226 RV 227
>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 46.5 bits (111), Expect = 2e-05
Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 8/136 (5%)
Query: 382 ALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFA-LGHYSDREVRTLSGGNKRKLS 440
+ LT RE++ + L ++ V+E + +FA LG + D+ V+T S G +L+
Sbjct: 99 GFDPELTGRENIYLRGLILGLTRKEIDEKVDEII-EFAELGDFIDQPVKTYSSGMYARLA 157
Query: 441 TAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERA---VSEGRCVILTSHNMEECEALC 497
++A ++ LDE + D F C+ER V + + ++L SH++ + C
Sbjct: 158 FSVATHVEPDILLLDEVLAVGDA---AFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYC 214
Query: 498 TKLTIMVNGQFTCLGS 513
+ + +GQ GS
Sbjct: 215 DRAIWLEHGQIRMEGS 230
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 46.5 bits (110), Expect = 2e-05
Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 15/111 (13%)
Query: 406 LLNTIVNESLNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGM 461
+L+ IV ESL K AL DR +LSGG +++L A L ++ LDEP S +
Sbjct: 136 VLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASAL 195
Query: 462 DP--GARRFLWTCIERAVSEGR---CVILTSHNMEECEALCTKLTIMVNGQ 507
DP A+ IE ++E + +I+ +HNM++ + + +NG
Sbjct: 196 DPISNAK------IEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGD 240
Score = 38.8 bits (90), Expect = 0.005
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 279 STVILDEPTSGVDPYSRRSIWELL--IKVYYASHSLSGRTVILTTHYMDEADLLGDRIAI 336
+ ++LDEP S +DP S I EL+ +K Y ++I+ TH M +A + DR A
Sbjct: 184 AVLLLDEPASALDPISNAKIEELITELKEEY--------SIIIVTHNMQQALRVSDRTAF 235
Query: 337 IAAGKL 342
G L
Sbjct: 236 FLNGDL 241
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 46.2 bits (110), Expect = 2e-05
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 413 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTC 472
+ L K L R + LSGG ++++ A AL N L+ LDEP +D R + T
Sbjct: 111 QMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTL 170
Query: 473 IERAVSE-GRCVILTSHNMEECEALCTKLTIMVNG 506
+ + E G+ V+L +H++EE + T+L ++ G
Sbjct: 171 LLKLWQETGKQVLLITHDIEEAVFMATELVLLSPG 205
Score = 37.4 bits (87), Expect = 0.013
Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
+LDEP +D ++R + LL+K++ +G+ V+L TH ++EA + + +++ G
Sbjct: 151 LLDEPFGALDAFTREQMQTLLLKLWQE----TGKQVLLITHDIEEAVFMATELVLLSPG 205
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 45.3 bits (107), Expect = 3e-05
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 5/106 (4%)
Query: 383 LNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTA 442
+N LT RE+ + ++ + E F+L H D LS G KR+++
Sbjct: 85 INPYLTLRENCLY-----DIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALL 139
Query: 443 IALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 488
+ L LDEP +D + + T I+ ++G V+LTSH
Sbjct: 140 RLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSH 185
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 45.9 bits (110), Expect = 3e-05
Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 21/120 (17%)
Query: 410 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL------GNTPLIFLDEPTSGMDP 463
+V +L + L H + R+ LSGG ++++ A L G + LDEPTS +D
Sbjct: 114 LVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDL 173
Query: 464 G--------ARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSAT 515
AR+ ER + V+L H++ ++ ++ G+ G+
Sbjct: 174 AHQHHVLRLARQL---AHERGL--AVIVVL--HDLNLAARYADRIVLLHQGRLVADGTPA 226
Score = 36.7 bits (86), Expect = 0.021
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
Query: 277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSL---SGRTVILTTHYMDEADLLGDR 333
P ++LDEPTS +D + + L L G VI+ H ++ A DR
Sbjct: 158 PPRWLLLDEPTSALDLAHQHHVLRLA-------RQLAHERGLAVIVVLHDLNLAARYADR 210
Query: 334 IAIIAAGKLQCCGS 347
I ++ G+L G+
Sbjct: 211 IVLLHQGRLVADGT 224
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 239
Score = 45.4 bits (108), Expect = 3e-05
Identities = 38/152 (25%), Positives = 69/152 (45%), Gaps = 5/152 (3%)
Query: 369 PQKSYIGYCPQFDALNDRLTPREHLEFYSRVR----NLPSVLLNTIVNESLNKFALGHYS 424
Q+ +G+ Q AL +T +++ F RV+ P + V+E L L +
Sbjct: 71 VQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLA 130
Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCV 483
DR LSGG +++++ A AL ++ LDEP +D R+ L + R E
Sbjct: 131 DRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTT 190
Query: 484 ILTSHNMEECEALCTKLTIMVNGQFTCLGSAT 515
+ +H+ EE + ++ +M G+ +G+
Sbjct: 191 VFVTHDQEEALEVADRVVVMNKGRIEQVGTPD 222
Score = 31.9 bits (73), Expect = 0.78
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGK 341
+LDEP +D R+ + L ++ H T + TH +EA + DR+ ++ G+
Sbjct: 159 LLDEPFGALDAKVRKELRRWLRRL----HDELHVTTVFVTHDQEEALEVADRVVVMNKGR 214
Query: 342 LQCCGS 347
++ G+
Sbjct: 215 IEQVGT 220
Score = 28.8 bits (65), Expect = 6.1
Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 14/120 (11%)
Query: 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNA 138
LGPSG G TL L ++ G+ SGT D TD+ R++G Q+ A
Sbjct: 34 LGPSGS--GKTTL-LRLIA-----GLERPDSGTILFGGEDA-TDVPVQERNVGFVFQHYA 84
Query: 139 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLAN----TLSGGMQRK 194
LF +TV +++ F ++K + + EI + +L + LA+ LSGG QR+
Sbjct: 85 LFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGG-QRQ 143
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds including
sugars, ions, peptides, and more complex organic
molecules. The nucleotide-binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 202
Score = 44.9 bits (107), Expect = 3e-05
Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 24/99 (24%)
Query: 364 DMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHY 423
+ I Y + D LT RE L+F R +
Sbjct: 76 EFAEKYPGEII-YVSEEDVHFPTLTVRETLDFALRCKG---------------------- 112
Query: 424 SDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
+ VR +SGG ++++S A AL+ ++ D T G+D
Sbjct: 113 -NEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLD 150
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 45.2 bits (107), Expect = 3e-05
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGAR-RFL 469
N +L + L ++ TLSGG + +++ ALL + LDEP S +D R +F
Sbjct: 115 ANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFR 174
Query: 470 WTCIERAVSEGRCVILTSHNMEECEA 495
+ G + +H++++ A
Sbjct: 175 QWVFSEVRAAGIPTVQVTHDLQDVPA 200
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 46.2 bits (109), Expect = 4e-05
Identities = 30/133 (22%), Positives = 63/133 (47%), Gaps = 1/133 (0%)
Query: 382 ALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLST 441
AL +T ++ F + + + ++L + L +Y+ LSGG ++++
Sbjct: 116 ALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGL 175
Query: 442 AIALLGNTPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGRCVILTSHNMEECEALCTKL 500
A AL N ++ +DE S +DP R + ++ R ++ SH+++E + ++
Sbjct: 176 ARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRI 235
Query: 501 TIMVNGQFTCLGS 513
IM NG+ +G+
Sbjct: 236 AIMQNGEVVQVGT 248
Score = 45.8 bits (108), Expect = 4e-05
Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
+++DE S +DP R + + L+K+ A H RT++ +H +DEA +GDRIAI+ G
Sbjct: 186 LLMDEAFSALDPLIRTEMQDELVKLQ-AKHQ---RTIVFISHDLDEAMRIGDRIAIMQNG 241
Query: 341 KLQCCGSSVFLKNSFARGY 359
++ G+ + N+ A Y
Sbjct: 242 EVVQVGTPDEILNNPANDY 260
Score = 31.9 bits (72), Expect = 0.96
Identities = 42/183 (22%), Positives = 81/183 (44%), Gaps = 22/183 (12%)
Query: 21 LPAANIHKISGSEVTYVLPQDPASMGAYVSLFESLSENRDKLGIDSYGISDTSLEEQPLG 80
L N++KI G + P Y+ S + +K G+ S G+ D SL + G
Sbjct: 5 LEIKNLYKIFG--------EHPQRAFKYIEQGLSKEQILEKTGL-SLGVKDASLAIEE-G 54
Query: 81 PSGITLGLHTLGLEFVSRSMLMGMLPVSSGT--------AKIYDHDIRTDMTTIRRSLGV 132
+ +GL G + R +L ++ + G AKI D ++R R+ + +
Sbjct: 55 EIFVIMGLSGSGKSTMVR-LLNRLIEPTRGQVLIDGVDIAKISDAELRE---VRRKKIAM 110
Query: 133 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQ 192
Q AL +TV ++ F +L + + + + + + +G+ + S + LSGGM+
Sbjct: 111 VFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMR 170
Query: 193 RKL 195
+++
Sbjct: 171 QRV 173
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 45.8 bits (109), Expect = 4e-05
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 423 YSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC 482
Y R LSGG KR+++ A L + DEPT+G+DP + + + +G+
Sbjct: 158 YLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKT 217
Query: 483 VILTSHNMEECEAL-CTKLTIMV-NGQ 507
+IL +H+++ L TK TI +G+
Sbjct: 218 IILVTHDLD--NVLEWTKRTIFFKDGK 242
Score = 43.9 bits (104), Expect = 1e-04
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 265 VAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYM 324
VA+ + AM ++ DEPT+G+DP + I E+ + G+T+IL TH +
Sbjct: 174 VALAGILAME---PDFLVFDEPTAGLDPQGVKEILEIFDNLN-----KQGKTIILVTHDL 225
Query: 325 DEA 327
D
Sbjct: 226 DNV 228
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 45.1 bits (106), Expect = 5e-05
Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 13/155 (8%)
Query: 386 RLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIAL 445
+L PR+ ++ R L V L V + L SD R LSGG ++ L A L
Sbjct: 129 KLVPRKEFRGVAQAR-LTEVGLWDAVKDRL--------SDSPFR-LSGGQQQLLCLARTL 178
Query: 446 LGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVN 505
N ++ LDEPTS +DP + I R++++ VI+ +HN+ + + + + +
Sbjct: 179 AVNPEVLLLDEPTSALDPTTTEKIEEFI-RSLADRLTVIIVTHNLAQAARISDRAALFFD 237
Query: 506 GQFTCLGSATHLKSKYGQGYSVKVRCAEGRSADAQ 540
G+ G L S ++ R G S D +
Sbjct: 238 GRLVEEGPTEQLFSS--PKHAETARYVAGLSGDVK 270
Score = 40.5 bits (94), Expect = 0.001
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 8/68 (11%)
Query: 276 VPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGR-TVILTTHYMDEADLLGDRI 334
V ++LDEPTS +DP + I E + SL+ R TVI+ TH + +A + DR
Sbjct: 180 VNPEVLLLDEPTSALDPTTTEKIEEFI-------RSLADRLTVIIVTHNLAQAARISDRA 232
Query: 335 AIIAAGKL 342
A+ G+L
Sbjct: 233 ALFFDGRL 240
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 45.8 bits (109), Expect = 5e-05
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 411 VNESLNKFALGHYSDR--EV----RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPG 464
+ L+K LG ++R E R LSGG +++L+ A LL +FLDE TS +D
Sbjct: 490 LVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEE 549
Query: 465 ARRFLWTCIERAVSEGRCVILTSH 488
L+ ++ + VI H
Sbjct: 550 TEDRLYQLLKEEL-PDATVISVGH 572
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 45.0 bits (107), Expect = 6e-05
Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 6/100 (6%)
Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIA-LLGNTP-LIFLDEPTSGMDPGARRF 468
V+++L + + + +RE LSGG K+++ AIA +L P +I LDE TS +DP RR
Sbjct: 121 VDQALRQVGMEDFLNREPHRLSGGQKQRV--AIAGVLALQPDIIILDEATSMLDPRGRRE 178
Query: 469 LWTCIERAVSEGR-CVILTSHNMEECEALCTKLTIMVNGQ 507
+ + + + V+ +H+++E A ++ +M G+
Sbjct: 179 VLETVRQLKEQKGITVLSITHDLDEA-AQADRVIVMNKGE 217
Score = 35.8 bits (83), Expect = 0.052
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 11/65 (16%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSL---SGRTVILTTHYMDEADLLGDRIAII 337
+ILDE TS +DP RR + E + L G TV+ TH +DEA DR+ ++
Sbjct: 162 IILDEATSMLDPRGRREVLETV-------RQLKEQKGITVLSITHDLDEA-AQADRVIVM 213
Query: 338 AAGKL 342
G++
Sbjct: 214 NKGEI 218
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 44.8 bits (106), Expect = 6e-05
Identities = 42/163 (25%), Positives = 70/163 (42%), Gaps = 28/163 (17%)
Query: 218 NNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSIL------------- 264
+N + AS+ +VS + V + P + K++ LK+ G L
Sbjct: 92 DNQLFSASVYQDVS---FGAVNLKLPEDEVRKRVD-NALKRTGIEHLKDKPTHCLSFGQK 147
Query: 265 --VAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTH 322
VA+ + M ++LDEPT+G+DP I +LL+++ G T+I+ TH
Sbjct: 148 KRVAIAGVLVME---PKVLVLDEPTAGLDPMGVSEIMKLLVEMQKE----LGLTIIIATH 200
Query: 323 YMDEADLLGDRIAIIAAGK--LQCCGSSVFLKNSFARGYYLSL 363
+D L D + ++ G+ LQ VF + R L L
Sbjct: 201 DIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEMLRKVNLRL 243
Score = 44.5 bits (105), Expect = 7e-05
Identities = 28/107 (26%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Query: 402 LPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGM 461
LP + V+ +L + + H D+ LS G K++++ A L+ ++ LDEPT+G+
Sbjct: 113 LPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGL 172
Query: 462 DP-GARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 507
DP G + +E G +I+ +H+++ C + +M G+
Sbjct: 173 DPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGR 219
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 45.6 bits (109), Expect = 6e-05
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 9/85 (10%)
Query: 410 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGAR--- 466
++E + + L + DR++ LSGG ++++ A ALL + F DEPTS +D R
Sbjct: 192 KLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNV 251
Query: 467 -RFLWTCIERAVSEGRCVILTSHNM 490
R + R ++EG+ V++ H++
Sbjct: 252 ARLI-----RELAEGKYVLVVEHDL 271
Score = 41.7 bits (99), Expect = 0.001
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 412 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
+E + L D+ V+ LSGG ++++ A L + L LDEP++ +D
Sbjct: 435 SEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLD 485
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 44.7 bits (106), Expect = 6e-05
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCV 483
D RT SGG +++L A L+ L+F+DEPT G+D + L + V E G V
Sbjct: 146 DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAV 205
Query: 484 ILTSHNMEECEALCTKLTIMVNGQ 507
++ +H++ L +L +M GQ
Sbjct: 206 VIVTHDLAVARLLADRLMVMKQGQ 229
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 44.5 bits (106), Expect = 7e-05
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 9/64 (14%)
Query: 281 VIL-DEPTSGVDPYSRRSIWELLIKVYYASHSLSGR-TVILTTHYMDEADLLGDRIAIIA 338
V+L DEPTS +DP S I EL+ L + T+++ TH M +A + D A
Sbjct: 170 VLLMDEPTSALDPISTLKIEELI-------TELKKKYTIVIVTHNMQQAARVSDYTAFFY 222
Query: 339 AGKL 342
G+L
Sbjct: 223 LGEL 226
Score = 41.8 bits (99), Expect = 6e-04
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 21/97 (21%)
Query: 407 LNTIVNESLNKFALGHYSDREV--------RTLSGGNKRKLSTAIALLGNTPLIFLDEPT 458
L+ IV SL K AL EV LSGG +++L A AL ++ +DEPT
Sbjct: 122 LDEIVESSLKKAALWD----EVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPT 177
Query: 459 SGMDP-GARRFLWTCIERAVSEGR---CVILTSHNME 491
S +DP + IE ++E + +++ +HNM+
Sbjct: 178 SALDPISTLK-----IEELITELKKKYTIVIVTHNMQ 209
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 44.1 bits (105), Expect = 8e-05
Identities = 37/133 (27%), Positives = 70/133 (52%), Gaps = 1/133 (0%)
Query: 382 ALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLST 441
AL LT E++ F R++ LP + V E+L+ L Y++R+ LSGG +++++
Sbjct: 82 ALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAI 141
Query: 442 AIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKL 500
A AL+ ++ LDEP +D R+ + ++R E G + +H+ EE + ++
Sbjct: 142 ARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRI 201
Query: 501 TIMVNGQFTCLGS 513
+M G+ +G+
Sbjct: 202 AVMNKGKIQQIGT 214
Score = 42.2 bits (100), Expect = 3e-04
Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 15/119 (12%)
Query: 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNA 138
LGPSG G TL ++ G +SG + DI T++ +R + Q A
Sbjct: 32 LGPSGC--GKTTL------LRLIAGFETPTSGEILLDGKDI-TNLPPHKRPVNTVFQNYA 82
Query: 139 LFDKLTVEEHMWFYSQLKQVPKDLAQLEIS---NMIGDLGIPHKRTSLANTLSGGMQRK 194
LF LTV E++ F +LK++PK + ++ +++ G +++ S LSGG Q++
Sbjct: 83 LFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPS---QLSGGQQQR 138
Score = 38.0 bits (89), Expect = 0.008
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
++LDEP +D R+ + L ++ G T + TH +EA + DRIA++ G
Sbjct: 152 LLLDEPLGALDLKLRKDMQLELKRL----QKELGITFVFVTHDQEEALTMSDRIAVMNKG 207
Query: 341 KLQCCGS 347
K+Q G+
Sbjct: 208 KIQQIGT 214
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 43.9 bits (104), Expect = 8e-05
Identities = 20/74 (27%), Positives = 40/74 (54%)
Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 489
T SGG +++++ A + + P++ LDEPT+ +D R+ + I A + G +I H+
Sbjct: 149 TFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHD 208
Query: 490 MEECEALCTKLTIM 503
E E + ++ +
Sbjct: 209 EEVRELVADRVMDV 222
Score = 29.3 bits (66), Expect = 4.6
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 272 AMSF-VPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLL 330
A F ++LDEPT+ +D +R+ + EL+ A G +I H + +L+
Sbjct: 161 ARGFIADYPILLLDEPTASLDAANRQVVVELI-----AEAKARGAALIGIFHDEEVRELV 215
Query: 331 GDRI 334
DR+
Sbjct: 216 ADRV 219
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 44.4 bits (105), Expect = 8e-05
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 10/82 (12%)
Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW 470
VN+ L+ ALG LSGG +++L A L + +I +DEP S +DP A +
Sbjct: 190 VNDRLDDNALG---------LSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIE 240
Query: 471 TCIERAVSEGRCVILTSHNMEE 492
IE ++E V++ +HNM++
Sbjct: 241 DLIEE-LAEEYTVVVVTHNMQQ 261
Score = 33.7 bits (77), Expect = 0.24
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGR-TVILTTHYMDEADLLGDRIAIIAA 339
+++DEP S +DP + I +L+ L+ TV++ TH M +A + D+ A+
Sbjct: 222 ILMDEPASALDPIATSKIEDLI-------EELAEEYTVVVVTHNMQQAARISDQTAVFLT 274
Query: 340 G 340
G
Sbjct: 275 G 275
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 44.1 bits (105), Expect = 8e-05
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 484
+R V+ LSGG +++++ A ALL + P++ LDE TS +D + R + +ER + R
Sbjct: 134 ERGVK-LSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERL-MKNRTTF 191
Query: 485 LTSH 488
+ +H
Sbjct: 192 VIAH 195
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 44.3 bits (104), Expect = 8e-05
Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 11/119 (9%)
Query: 406 LLNTIVNESLNKFALGHYS----DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGM 461
L++ V ESL + A+ + DR + SGG ++++ A AL ++ LDEPTS +
Sbjct: 119 LIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSAL 178
Query: 462 DPGARRFLWTCIERAVSEGR---CVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 517
DP + + IE + E + I+ +HN+++ + + ++NG G +
Sbjct: 179 DPISS----SEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233
Score = 40.8 bits (95), Expect = 0.001
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 276 VPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIA 335
V V+LDEPTS +DP S I E L+++ H T I+ TH + +A + D+ A
Sbjct: 164 VRPKVVLLDEPTSALDPISSSEIEETLMEL---KHQY---TFIMVTHNLQQAGRISDQTA 217
Query: 336 IIAAGKL 342
+ G L
Sbjct: 218 FLMNGDL 224
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 43.9 bits (103), Expect = 1e-04
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
LSGG +++L A AL L+ LDEPTS +DP + + + + +S +I+ +HNM
Sbjct: 143 LSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELL-KELSHNLSMIMVTHNM 201
Query: 491 EE 492
++
Sbjct: 202 QQ 203
Score = 41.6 bits (97), Expect = 5e-04
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
++LDEPTS +DP S I ELL ++ SH+LS +I+ TH M + + D A G
Sbjct: 164 LLLDEPTSALDPISSGVIEELLKEL---SHNLS---MIMVTHNMQQGKRVADYTAFFHLG 217
Query: 341 KLQCCGSS 348
+L G S
Sbjct: 218 ELIEFGES 225
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 44.6 bits (106), Expect = 1e-04
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 489
TLSGG +++++ A AL G+ L+ LDEP S +D + L I+ + G V++ +H
Sbjct: 454 TLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHR 513
Query: 490 MEECEALCTKLTIMVNGQFTCLGSATHLKSK 520
+ K+ ++ +G+ G + +K
Sbjct: 514 PSLLGCV-DKILVLQDGRIARFGERDEVLAK 543
Score = 30.8 bits (70), Expect = 2.3
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLG--DRIAIIA 338
V+LDEP S +D +++ + + G TV++ TH LLG D+I ++
Sbjct: 476 VVLDEPNSNLDEEGEQALANAIKAL-----KARGITVVVITH---RPSLLGCVDKILVLQ 527
Query: 339 AGKLQCCG 346
G++ G
Sbjct: 528 DGRIARFG 535
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 43.9 bits (103), Expect = 1e-04
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 11/118 (9%)
Query: 407 LNTIVNESLNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
+ IV E L K L DR LSGG +++L+ A AL ++ +DEPTS +D
Sbjct: 126 IKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMID 185
Query: 463 PGARRFLWTCIERAVSEGR---CVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 517
+ IE+ ++E + +++ SHN ++ + + + NG+ GS+ +
Sbjct: 186 IVNSQ----AIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239
Score = 36.2 bits (83), Expect = 0.033
Identities = 19/82 (23%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 267 VTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDE 326
+T+ A++ P +++DEPTS +D + ++I +L+ ++ + +++ +H +
Sbjct: 162 LTIARALALKP-KVLLMDEPTSMIDIVNSQAIEKLITELK------NEIAIVIVSHNPQQ 214
Query: 327 ADLLGDRIAIIAAGKLQCCGSS 348
+ D +A + G+L GSS
Sbjct: 215 VARVADYVAFLYNGELVEWGSS 236
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 43.3 bits (103), Expect = 1e-04
Identities = 24/78 (30%), Positives = 40/78 (51%)
Query: 413 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTC 472
E L K L +D LSGG +++++ A AL N ++ DEPTS +DP +
Sbjct: 118 ELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDV 177
Query: 473 IERAVSEGRCVILTSHNM 490
++ EG +++ +H M
Sbjct: 178 MKDLAEEGMTMVVVTHEM 195
Score = 35.6 bits (83), Expect = 0.037
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 30/127 (23%)
Query: 79 LGPSGI---TLGLHTL-GLEFVSRSMLMGMLPVSSGTAKIYDHDI---RTDMTTIRRSLG 131
+GPSG TL L + LE SGT I + + ++ +R+ +G
Sbjct: 32 IGPSGSGKSTL-LRCINLLE-----------EPDSGTIIIDGLKLTDDKKNINELRQKVG 79
Query: 132 -VCPQYNALFDKLTVEEH-----MWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLAN 185
V Q+N LF LTV E+ + +K + K A+ ++ +G+ K +
Sbjct: 80 MVFQQFN-LFPHLTVLENITLAPIK----VKGMSKAEAEERALELLEKVGLADKADAYPA 134
Query: 186 TLSGGMQ 192
LSGG Q
Sbjct: 135 QLSGGQQ 141
Score = 34.8 bits (81), Expect = 0.064
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 10/65 (15%)
Query: 281 VIL-DEPTSGVDPYSRRSIWELLIKVYYASHSL--SGRTVILTTHYMDEADLLGDRIAII 337
V+L DEPTS +DP EL+ +V L G T+++ TH M A + DR+ +
Sbjct: 156 VMLFDEPTSALDP-------ELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFM 208
Query: 338 AAGKL 342
G++
Sbjct: 209 DDGRI 213
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 44.9 bits (107), Expect = 1e-04
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 15/66 (22%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-------GRCV 483
LSGG +++L+ A ALL ++ LDE TS +DP E + + GR V
Sbjct: 610 LSGGQRQRLALARALLSKPKILLLDEATSALDPE--------TEAIILQNLLQILQGRTV 661
Query: 484 ILTSHN 489
I+ +H
Sbjct: 662 IIIAHR 667
Score = 39.9 bits (94), Expect = 0.004
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
++LDE TS +DP + I + L+++ L GRTVI+ H DRI ++ G
Sbjct: 631 LLLDEATSALDPETEAIILQNLLQI------LQGRTVIIIAHR-LSTIRSADRIIVLDQG 683
Query: 341 KLQCCGSSVFLKNSFARGYYLSL 363
K+ GS L G Y L
Sbjct: 684 KIVEQGSHEELLAQ--GGLYARL 704
Score = 34.5 bits (80), Expect = 0.17
Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 12/102 (11%)
Query: 100 MLMGMLPVSSGTAKIYDHDI-RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWF------Y 152
+L+G+ G + D+ D+ ++RR +G Q LF ++ E++
Sbjct: 518 LLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSG-SIRENIALGNPEATD 576
Query: 153 SQLKQVPKDL-AQLEISNMIGDLGIPHKRTSLANTLSGGMQR 193
++ + + A I N+ +G LSGG QR
Sbjct: 577 EEIIEAAQLAGAHEFIENL--PMGYDTPVGEGGANLSGG-QR 615
>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters [Transport and
binding proteins, Anions].
Length = 247
Score = 43.8 bits (104), Expect = 1e-04
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 9/64 (14%)
Query: 281 VIL-DEPTSGVDPYSRRSIWELLIKVYYASHSLSGR-TVILTTHYMDEADLLGDRIAIIA 338
V+L DEPTS +DP + I EL+ L + T+++ TH M +A + DR A
Sbjct: 165 VLLLDEPTSALDPIATGKIEELI-------QELKKKYTIVIVTHNMQQAARISDRTAFFY 217
Query: 339 AGKL 342
G+L
Sbjct: 218 DGEL 221
Score = 42.3 bits (100), Expect = 3e-04
Identities = 34/91 (37%), Positives = 47/91 (51%), Gaps = 11/91 (12%)
Query: 407 LNTIVNESLNKFAL-GHYSDREVR---TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
L+ IV ESL K AL DR LSGG +++L A AL ++ LDEPTS +D
Sbjct: 117 LDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALD 176
Query: 463 PGARRFLWTCIERAVSEGR---CVILTSHNM 490
P A IE + E + +++ +HNM
Sbjct: 177 PIATG----KIEELIQELKKKYTIVIVTHNM 203
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 43.6 bits (103), Expect = 1e-04
Identities = 25/78 (32%), Positives = 38/78 (48%)
Query: 413 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTC 472
E L K L R LSGG +++++ A AL +I DEPTS +DP +
Sbjct: 127 ELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNT 186
Query: 473 IERAVSEGRCVILTSHNM 490
I + E R +++ +H M
Sbjct: 187 IRQLAQEKRTMVIVTHEM 204
Score = 34.7 bits (80), Expect = 0.085
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 14/81 (17%)
Query: 265 VAVTVLFAMSFVPASTVIL-DEPTSGVDPYSRRSIWELLIKVYYASHSLS--GRTVILTT 321
VA+ AM P VIL DEPTS +DP EL+ +V L+ RT+++ T
Sbjct: 153 VAIARALAMR--PE--VILFDEPTSALDP-------ELVGEVLNTIRQLAQEKRTMVIVT 201
Query: 322 HYMDEADLLGDRIAIIAAGKL 342
H M A + DR + G++
Sbjct: 202 HEMSFARDVADRAIFMDQGRI 222
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 43.6 bits (103), Expect = 1e-04
Identities = 46/151 (30%), Positives = 71/151 (47%), Gaps = 17/151 (11%)
Query: 369 PQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREV 428
K IGY PQ L+ L P + + R+R P I+ +L + GH D +
Sbjct: 64 NGKLRIGYVPQKLYLDTTL-PLT-VNRFLRLR--PGTKKEDIL-PALKRVQAGHLIDAPM 118
Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC-VILTS 487
+ LSGG +++ A ALL L+ LDEPT G+D + L+ I++ E C V++ S
Sbjct: 119 QKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVS 178
Query: 488 HNM-----EECEALCTKLTIMVNGQFTCLGS 513
H++ + E LC +N C G+
Sbjct: 179 HDLHLVMAKTDEVLC------LNHHICCSGT 203
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 43.5 bits (103), Expect = 2e-04
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGR-TVILTTHYMDEADLLGDRIAIIAA 339
++LDEPTS +DP S I EL+ L + T+++ TH M +A + D A +
Sbjct: 190 LLLDEPTSALDPISTLKIEELI-------TELKSKYTIVIVTHNMQQAARVSDYTAFMYM 242
Query: 340 GKL 342
GKL
Sbjct: 243 GKL 245
Score = 39.6 bits (93), Expect = 0.003
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 19/97 (19%)
Query: 407 LNTIVNESLNKFALGHYSDREVR--------TLSGGNKRKLSTAIALLGNTPLIFLDEPT 458
L+ V SL AL EV+ LSGG +++L A A+ ++ LDEPT
Sbjct: 141 LDEAVERSLRGAALWD----EVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPT 196
Query: 459 SGMDPGARRFLWTCIERAVSEGR---CVILTSHNMEE 492
S +DP + IE ++E + +++ +HNM++
Sbjct: 197 SALDPIST----LKIEELITELKSKYTIVIVTHNMQQ 229
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 43.4 bits (102), Expect = 2e-04
Identities = 19/61 (31%), Positives = 35/61 (57%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
LSGG ++++S A AL ++ DEPTS +DP + +++ EG+ +++ +H M
Sbjct: 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 212
Query: 491 E 491
Sbjct: 213 G 213
Score = 32.2 bits (73), Expect = 0.58
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 10/79 (12%)
Query: 267 VTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLS--GRTVILTTHYM 324
V++ A++ P ++ DEPTS +DP EL+ +V L+ G+T+++ TH M
Sbjct: 161 VSIARALAMEP-EVLLFDEPTSALDP-------ELVGEVLRIMQQLAEEGKTMVVVTHEM 212
Query: 325 DEADLLGDRIAIIAAGKLQ 343
A + + + GK++
Sbjct: 213 GFARHVSSHVIFLHQGKIE 231
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 43.0 bits (102), Expect = 2e-04
Identities = 31/118 (26%), Positives = 53/118 (44%)
Query: 374 IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSG 433
IG Q L T E++ RV P + V+E L+ L H + LSG
Sbjct: 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSG 140
Query: 434 GNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 491
G +++++ A A++ ++ DEPT +DP + E G V++ +H++E
Sbjct: 141 GEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLE 198
Score = 42.2 bits (100), Expect = 3e-04
Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 28/171 (16%)
Query: 100 MLMGMLPVSSGTAKIYDHDI----RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQL 155
++ G + G + HD+ ++ +RR +GV Q L TV E++ ++
Sbjct: 47 LIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRV 106
Query: 156 KQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMN 215
P + +S ++ +G+ HK +L + LSGG Q+++ IA + +N
Sbjct: 107 IGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVA-----------IAR-AIVN 154
Query: 216 AANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVA 266
+L A P+ D + M L E + + GT++L+A
Sbjct: 155 --QPAVLLADEPTGNLDPDLS----WEIMRL------FEEINRLGTTVLMA 193
Score = 34.9 bits (81), Expect = 0.067
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 272 AMSFVPASTVIL-DEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLL 330
A + V V+L DEPT +DP I L ++ + G TV++ TH ++ + +
Sbjct: 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI-----NRLGTTVLMATHDLELVNRM 203
Query: 331 GDRIAIIAAGKL 342
R+ + G+L
Sbjct: 204 RHRVLALEDGRL 215
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 42.9 bits (101), Expect = 2e-04
Identities = 31/130 (23%), Positives = 59/130 (45%), Gaps = 15/130 (11%)
Query: 407 LNTIVNESLNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
L+ IV +SL L DR LSGG +++L A A+ ++ +DEP S +D
Sbjct: 122 LDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALD 181
Query: 463 PGARRFLWTCIERAVSEGR---CVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL-- 517
P A IE + E + +I+ +H+M++ + + ++ +G+ + +
Sbjct: 182 PVAT----NVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFK 237
Query: 518 --KSKYGQGY 525
+S + Y
Sbjct: 238 NPQSSKTKRY 247
Score = 38.7 bits (90), Expect = 0.006
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 8/68 (11%)
Query: 276 VPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGR-TVILTTHYMDEADLLGDRI 334
V + +++DEP S +DP + I E LI+ L T+I+ TH M +A + DR+
Sbjct: 166 VKPTMLLMDEPCSALDPVATNVI-ENLIQ------ELKKNFTIIVVTHSMKQAKKVSDRV 218
Query: 335 AIIAAGKL 342
A +G++
Sbjct: 219 AFFQSGRI 226
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 43.9 bits (104), Expect = 2e-04
Identities = 22/58 (37%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 488
LSGG +++L+ A ALL + P++ LDE TS +D + R + +ER + +GR ++ +H
Sbjct: 470 LSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALER-LMQGRTTLVIAH 526
Score = 30.8 bits (70), Expect = 2.2
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 9/86 (10%)
Query: 278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAII 337
A +ILDE TS +D S R + L + GRT ++ H + + DRI ++
Sbjct: 488 APILILDEATSALDNESERLVQAAL------ERLMQGRTTLVIAHRLSTIE-KADRIVVM 540
Query: 338 AAGKLQCCGSSVFLKNSFARGYYLSL 363
G++ G+ L G Y L
Sbjct: 541 DDGRIVERGTHNELLA--RNGLYAQL 564
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 43.1 bits (101), Expect = 2e-04
Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 12/131 (9%)
Query: 391 EHLEFYSRVRNLPS-VLLNTIVNESLNKFAL-GHYSDRE---VRTLSGGNKRKLSTAIAL 445
E++ + R+R + +L V +L AL DR LSGG +++L A AL
Sbjct: 117 ENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARAL 176
Query: 446 LGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR---CVILTSHNMEECEALCTKLTI 502
+ ++ DEPTS +DP A IE +S+ + +++ +HNM++ +
Sbjct: 177 ATDPEILLFDEPTSALDPIAT----ASIEELISDLKNKVTILIVTHNMQQAARVSDYTAY 232
Query: 503 MVNGQFTCLGS 513
M G+ G+
Sbjct: 233 MYMGELIEFGA 243
Score = 36.1 bits (83), Expect = 0.034
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
++ DEPTS +DP + SI EL+ S + T+++ TH M +A + D A + G
Sbjct: 183 LLFDEPTSALDPIATASIEELI------SDLKNKVTILIVTHNMQQAARVSDYTAYMYMG 236
Query: 341 KLQCCGSS--VFLK 352
+L G++ +F+K
Sbjct: 237 ELIEFGATDTIFIK 250
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 43.3 bits (103), Expect = 2e-04
Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 5/63 (7%)
Query: 281 VIL-DEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAA 339
V+L DE TS +DP + RSI ELL + + G T++L TH MD + DR+A+I A
Sbjct: 161 VLLCDEATSALDPATTRSILELLKDI----NRELGLTIVLITHEMDVVKRICDRVAVIDA 216
Query: 340 GKL 342
G+L
Sbjct: 217 GRL 219
Score = 34.8 bits (81), Expect = 0.12
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFL-DEPTSGMDPGARRFL 469
V E L L +DR LSGG K++++ A AL + P + L DE TS +DP R +
Sbjct: 121 VTELLELVGLSDKADRYPAQLSGGQKQRVAIARAL-ASNPKVLLCDEATSALDPATTRSI 179
Query: 470 WTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQ 507
++ E G ++L +H M+ + +C ++ ++ G+
Sbjct: 180 LELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGR 218
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 42.8 bits (101), Expect = 2e-04
Identities = 23/93 (24%), Positives = 45/93 (48%)
Query: 415 LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIE 474
L K + +D LSGG +++++ A AL ++ DEPTS +DP + ++
Sbjct: 137 LAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQ 196
Query: 475 RAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 507
EGR +++ +H M + + + + G+
Sbjct: 197 DLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGK 229
Score = 31.6 bits (72), Expect = 0.94
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 10/47 (21%)
Query: 281 VIL-DEPTSGVDPYSRRSIWELLIKVYYASHSLS--GRTVILTTHYM 324
V+L DEPTS +DP EL+ +V L+ GRT+++ TH M
Sbjct: 173 VMLFDEPTSALDP-------ELVGEVLKVMQDLAEEGRTMVVVTHEM 212
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 42.9 bits (101), Expect = 2e-04
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Query: 403 PSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTP-------LIFLD 455
P ++N+ AL R LSGG +++ A +L TP L+ LD
Sbjct: 98 PDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLD 157
Query: 456 EPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
EP + +D + L + +G ++++SH++
Sbjct: 158 EPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDL 192
Score = 31.7 bits (72), Expect = 0.88
Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
++LDEP + +D + ++ LL + G +++++H ++ R ++ G
Sbjct: 154 LLLDEPMNSLDVAQQSALDRLLSAL-----CQQGLAIVMSSHDLNHTLRHAHRAWLLKRG 208
Query: 341 KLQCCGS 347
KL G
Sbjct: 209 KLLASGR 215
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 42.8 bits (101), Expect = 2e-04
Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 13/109 (11%)
Query: 407 LNTIVNESLNKFAL-GHYSDREVRT---LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
L+ IV +SL AL DR ++ LSGG +++L A AL ++ +DEPTS +D
Sbjct: 119 LDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALD 178
Query: 463 PGARRFLWTC-IERAVSEGR---CVILTSHNMEECEALCTKLTIMVNGQ 507
P + T IE + E + +++ +HNM++ + K +NG+
Sbjct: 179 P-----ISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGE 222
Score = 38.9 bits (91), Expect = 0.004
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 11/65 (16%)
Query: 281 VIL-DEPTSGVDPYSRRSIWELLI--KVYYASHSLSGRTVILTTHYMDEADLLGDRIAII 337
V+L DEPTS +DP S I EL+ K Y T+++ TH M +A + D+ A
Sbjct: 167 VLLMDEPTSALDPISTLKIEELIQELKKDY--------TIVIVTHNMQQASRISDKTAFF 218
Query: 338 AAGKL 342
G++
Sbjct: 219 LNGEI 223
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 43.8 bits (104), Expect = 2e-04
Identities = 27/89 (30%), Positives = 45/89 (50%)
Query: 402 LPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGM 461
L V +E + + L + DR+V LSGG ++++ A ALL + + F DEP+S +
Sbjct: 185 LKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYL 244
Query: 462 DPGARRFLWTCIERAVSEGRCVILTSHNM 490
D R I +G+ VI+ H++
Sbjct: 245 DIRQRLNAARVIRELAEDGKYVIVVEHDL 273
Score = 41.9 bits (99), Expect = 9e-04
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 374 IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNT-IVNESLNKFALGHYSDREVRTLS 432
+ Y PQ+ + + T + L + S ++ E + L +R V LS
Sbjct: 403 VSYKPQYISPDYDGTVEDLLR-----SAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELS 457
Query: 433 GGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
GG ++++ A AL L LDEP++ +D
Sbjct: 458 GGELQRVAIAAALSREADLYLLDEPSAYLD 487
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 42.6 bits (101), Expect = 3e-04
Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 413 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDP-GARRFLWT 471
+L + L + + LSGG +++++ A AL+ LI DEP + +DP +R+ +
Sbjct: 127 AALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDL 186
Query: 472 CIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 507
EG VI++ H ++ ++ + +G+
Sbjct: 187 LKRINREEGITVIVSLHQVDLAREYADRIVGLKDGR 222
Score = 41.4 bits (98), Expect = 5e-04
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 24/110 (21%)
Query: 248 HKQMALETLKKAG--------TSIL-------VAVTVLFAMSFVPASTVIL-DEPTSGVD 291
KQ AL L++ G L VA+ A + + +IL DEP + +D
Sbjct: 121 EKQRALAALERVGLLDKAYQRADQLSGGQQQRVAI----ARALMQQPKLILADEPVASLD 176
Query: 292 PYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGK 341
P S R + +LL ++ + G TVI++ H +D A DRI + G+
Sbjct: 177 PASSRQVMDLLKRI----NREEGITVIVSLHQVDLAREYADRIVGLKDGR 222
Score = 32.5 bits (75), Expect = 0.41
Identities = 37/133 (27%), Positives = 55/133 (41%), Gaps = 32/133 (24%)
Query: 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT----DMTTIRRSLGVCP 134
+GPSG G TL L G++ +SG+ I DI + +RR +G+
Sbjct: 33 IGPSGA--GKSTL------LRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIF 84
Query: 135 QYNALFDKLTVEE---------HMWFYSQLKQVPKD-----LAQLEISNMIGDLGIPHKR 180
Q L ++L+V E + S PK+ LA LE +G+ K
Sbjct: 85 QQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALE------RVGLLDKA 138
Query: 181 TSLANTLSGGMQR 193
A+ LSGG Q+
Sbjct: 139 YQRADQLSGGQQQ 151
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 43.4 bits (103), Expect = 3e-04
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 488
TLSGG +++++ A AL G+ L+ LDEP S +D L I A + G V++ +H
Sbjct: 471 ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAH 530
Query: 489 NMEECEALCTKLTIMVNGQ 507
A K+ ++ +G+
Sbjct: 531 RPSAL-ASVDKILVLQDGR 548
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
Provisional.
Length = 549
Score = 43.7 bits (103), Expect = 3e-04
Identities = 35/144 (24%), Positives = 67/144 (46%), Gaps = 6/144 (4%)
Query: 383 LNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTA 442
LN +LT E++E + L + I+ E + +G + + V+T S G K +L A
Sbjct: 96 LNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFA 155
Query: 443 IALLGNTPLIFLDEPTSGMDPGARRFLWTCIERA---VSEGRCVILTSHNMEECEALCTK 499
I++ N ++ +DE S G + F C+++ +G+ + SH++ + ++ CTK
Sbjct: 156 ISVHINPDILVIDEALS---VGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTK 212
Query: 500 LTIMVNGQFTCLGSATHLKSKYGQ 523
+ GQ G + Y +
Sbjct: 213 ALWLHYGQVKEYGDIKEVVDHYDE 236
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 42.8 bits (100), Expect = 3e-04
Identities = 39/159 (24%), Positives = 69/159 (43%), Gaps = 25/159 (15%)
Query: 374 IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSG 433
+ Y P+ + +NDR + +E ++L S L V + L D+ LSG
Sbjct: 183 VAYGPRNNGINDRKILEKIVE-----KSLKSAALWDEVKDDL---------DKAGNALSG 228
Query: 434 GNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR---CVILTSHNM 490
G +++L A A+ ++ +DEPTS +DP A IE + E + +I+ +H+M
Sbjct: 229 GQQQRLCIARAIALEPEVLLMDEPTSALDPIAT----AKIEELILELKKKYSIIIVTHSM 284
Query: 491 EECEALCTKLTIMVNGQFTCLGSAT----HLKSKYGQGY 525
+ + + + G G H K+K + Y
Sbjct: 285 AQAQRISDETVFFYQGWIEEAGETKTIFIHPKNKRTKDY 323
Score = 36.2 bits (83), Expect = 0.043
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 11/92 (11%)
Query: 272 AMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLG 331
A++ P +++DEPTS +DP + I EL++++ ++I+ TH M +A +
Sbjct: 239 AIALEP-EVLLMDEPTSALDPIATAKIEELILELK------KKYSIIIVTHSMAQAQRIS 291
Query: 332 DRIAIIAAGKLQCCGS--SVFL--KNSFARGY 359
D G ++ G ++F+ KN + Y
Sbjct: 292 DETVFFYQGWIEEAGETKTIFIHPKNKRTKDY 323
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 42.3 bits (99), Expect = 3e-04
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 10/82 (12%)
Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW 470
V + LNK ALG LSGG +++L A AL ++ +DEP S +DP A +
Sbjct: 140 VKDKLNKSALG---------LSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVE 190
Query: 471 TCIERAVSEGRCVILTSHNMEE 492
I SE I+T HNM++
Sbjct: 191 ELIHSLRSELTIAIVT-HNMQQ 211
Score = 33.1 bits (75), Expect = 0.38
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 276 VPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSL-SGRTVILTTHYMDEADLLGDRI 334
+ +++DEP S +DP + + EL+ HSL S T+ + TH M +A + D
Sbjct: 167 IKPKVLLMDEPCSALDPIATMKVEELI-------HSLRSELTIAIVTHNMQQATRVSDFT 219
Query: 335 AIIA 338
A +
Sbjct: 220 AFFS 223
>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 42.0 bits (99), Expect = 4e-04
Identities = 21/74 (28%), Positives = 40/74 (54%)
Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 489
T SGG +++++ A + + P++ LDEPT+ +D R + I A + G ++ H+
Sbjct: 152 TFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHD 211
Query: 490 MEECEALCTKLTIM 503
E EA+ +L +
Sbjct: 212 EEVREAVADRLLDV 225
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 42.1 bits (99), Expect = 4e-04
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Query: 276 VPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGR-TVILTTHYMDEADLLGDRI 334
V +++DEP S +DP + + I EL+ H L R T+I+ TH M +A + D
Sbjct: 166 VEPEVLLMDEPASALDPIATQKIEELI-------HELKARYTIIIVTHNMQQAARVSDVT 218
Query: 335 AIIAAGKLQCCGSS 348
A GKL G +
Sbjct: 219 AFFYMGKLIEVGPT 232
Score = 38.6 bits (90), Expect = 0.006
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 10/82 (12%)
Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW 470
V + L++ ALG LSGG +++L A AL ++ +DEP S +DP A + +
Sbjct: 139 VKDRLHESALG---------LSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIE 189
Query: 471 TCIERAVSEGRCVILTSHNMEE 492
I + +I+ +HNM++
Sbjct: 190 ELIHE-LKARYTIIIVTHNMQQ 210
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 42.8 bits (101), Expect = 5e-04
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
LSGG +++++ A AL+GN ++ DE TS +D + + + R + GR VI+ +H +
Sbjct: 594 LSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNM-REICRGRTVIIIAHRL 652
Query: 491 EECEALCTKLTIMVNGQFTCLGSATHLKSKYG 522
A C ++ ++ GQ G L + G
Sbjct: 653 STVRA-CDRIIVLEKGQIAESGRHEELLALQG 683
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 41.8 bits (98), Expect = 5e-04
Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 406 LLNTIVNESLNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGM 461
L+ IV +SL A+ DR LSGG +++L A L +I +DEPTS +
Sbjct: 139 TLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSAL 198
Query: 462 DPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNG 506
DP + + ++ + + +I+ +HNM++ + K +NG
Sbjct: 199 DPISTLKVEELVQE-LKKDYSIIIVTHNMQQAARISDKTAFFLNG 242
Score = 37.1 bits (86), Expect = 0.016
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 10/62 (16%)
Query: 281 VILDEPTSGVDPYSRRSIWELL--IKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIA 338
+++DEPTS +DP S + EL+ +K Y ++I+ TH M +A + D+ A
Sbjct: 189 ILMDEPTSALDPISTLKVEELVQELKKDY--------SIIIVTHNMQQAARISDKTAFFL 240
Query: 339 AG 340
G
Sbjct: 241 NG 242
>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 41.9 bits (98), Expect = 5e-04
Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 7/91 (7%)
Query: 407 LNTIVNESLNKFALGHYSDREVR----TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
L+ +V +SL + A+ +++ LSGG +++L A A+ ++ +DEP S +D
Sbjct: 134 LDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALD 193
Query: 463 P-GARRFLWTCIERAVSEGRCVILTSHNMEE 492
P R+ C+E + E +I+ +HNM++
Sbjct: 194 PISTRQVEELCLE--LKEQYTIIMVTHNMQQ 222
Score = 35.8 bits (82), Expect = 0.048
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIA 335
+++DEP S +DP S R + EL +++ T+I+ TH M +A + D A
Sbjct: 183 LLMDEPCSALDPISTRQVEELCLELK------EQYTIIMVTHNMQQASRVADWTA 231
>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 41.6 bits (98), Expect = 5e-04
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGAR-RFLWTCIERAVSE-GRCVILTSH 488
+SGG +++ A+ALL P I DEPT+ +D A+ R L +E V + ++L +H
Sbjct: 141 MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARIL-DLLESIVQKRALGMLLVTH 199
Query: 489 NMEECEALCTKLTIMVNG 506
+M L + +M +G
Sbjct: 200 DMGVVARLADDVAVMSHG 217
Score = 34.3 bits (79), Expect = 0.14
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
+I DEPT+ +D ++ I +LL + +L ++L TH M L D +A+++ G
Sbjct: 162 IIADEPTTDLDVVAQARILDLLESIV-QKRALG---MLLVTHDMGVVARLADDVAVMSHG 217
Query: 341 KLQCCGS 347
++ G
Sbjct: 218 RIVEQGD 224
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 42.6 bits (101), Expect = 5e-04
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 488
R LSGG +++L+ A ALL + P++ LDE TS +D + ++ + +GR + +H
Sbjct: 470 RQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALD-ELMKGRTTFIIAH 528
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 41.5 bits (97), Expect = 6e-04
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR---CVILT 486
+LSGG ++++ A L +I LDEPTS +DP + T IE + E R +IL
Sbjct: 148 SLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISS----TQIENMLLELRDQYTIILV 203
Query: 487 SHNMEECEALCTKLTIMVNGQF 508
+H+M + + K + G
Sbjct: 204 THSMHQASRISDKTAFFLTGNL 225
Score = 41.5 bits (97), Expect = 6e-04
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 276 VPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIA 335
V ++LDEPTS +DP S I +L+++ T+IL TH M +A + D+ A
Sbjct: 165 VKPDVILLDEPTSALDPISSTQIENMLLELR------DQYTIILVTHSMHQASRISDKTA 218
Query: 336 IIAAGKL 342
G L
Sbjct: 219 FFLTGNL 225
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 41.7 bits (98), Expect = 6e-04
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 10/70 (14%)
Query: 281 VILDEPTSGVDPYSRRSIWELL--IKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIA 338
++LDEPTS +DP S I E L +K Y T++L T M +A + DR
Sbjct: 170 ILLDEPTSALDPISAGKIEETLLGLKDDY--------TMLLVTRSMQQASRISDRTGFFL 221
Query: 339 AGKLQCCGSS 348
G L +
Sbjct: 222 DGDLIEYNDT 231
Score = 37.4 bits (87), Expect = 0.013
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDP-GARRFLWTCIERAVSEGRCVILTSHN 489
LSGG ++++ A L + +I LDEPTS +DP A + T + + + ++L + +
Sbjct: 149 LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLG--LKDDYTMLLVTRS 206
Query: 490 MEECEALCTKLTIMVNG 506
M++ + + ++G
Sbjct: 207 MQQASRISDRTGFFLDG 223
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 230
Score = 41.2 bits (97), Expect = 6e-04
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGAR-RFLWTCIERAVSEGRCVILTSHN 489
LSGG +++ A+ALL P + DEPT+ +D + R L E G ++L +H+
Sbjct: 126 LSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHD 185
Query: 490 MEECEALCTKLTIMVNGQ 507
+ + ++ +M +G+
Sbjct: 186 LGVVARIADEVAVMDDGR 203
Score = 33.1 bits (76), Expect = 0.26
Identities = 20/85 (23%), Positives = 44/85 (51%), Gaps = 9/85 (10%)
Query: 263 ILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTH 322
+++A+ +L F+ I DEPT+ +D ++ + +LL ++ L G ++L TH
Sbjct: 134 VMIALALLLEPPFL-----IADEPTTDLDVVNQARVLKLLREL----RQLFGTGILLITH 184
Query: 323 YMDEADLLGDRIAIIAAGKLQCCGS 347
+ + D +A++ G++ G+
Sbjct: 185 DLGVVARIADEVAVMDDGRIVERGT 209
>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 41.5 bits (97), Expect = 7e-04
Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW 470
V + L+K ALG LSGG +++L A + + +I +DEP S +DP + +
Sbjct: 136 VKDKLDKSALG---------LSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIE 186
Query: 471 TCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 507
I + + E +++ +HNM++ + + +NG+
Sbjct: 187 DLIHK-LKEDYTIVIVTHNMQQATRVSKYTSFFLNGE 222
Score = 31.5 bits (71), Expect = 1.2
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 276 VPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGR-TVILTTHYMDEA 327
V +++DEP S +DP S I +L+ H L T+++ TH M +A
Sbjct: 163 VSPEVILMDEPCSALDPISTTKIEDLI-------HKLKEDYTIVIVTHNMQQA 208
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 41.3 bits (98), Expect = 7e-04
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 101 LMGMLPVSSGTAKIYDHDIRTDMTT---IRRSLGVCPQYNALFDKLTVEEH--MWFYSQL 155
+MG++ SG DI T + R + P+ +F +LTVEE+ + Y++
Sbjct: 49 IMGLVRPRSGRIIFDGEDI-TGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARR 107
Query: 156 KQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQ 192
+ ++ E+ + L +R A TLSGG Q
Sbjct: 108 DKEAQERDLEEVYELFPRLK--ERRNQRAGTLSGGEQ 142
Score = 37.8 bits (89), Expect = 0.010
Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 3/143 (2%)
Query: 374 IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKF-ALGHYSDREVRTLS 432
I Y P+ + RLT E+L + R + E F L ++ TLS
Sbjct: 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDL-EEVYELFPRLKERRNQRAGTLS 138
Query: 433 GGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIER-AVSEGRCVILTSHNME 491
GG ++ L+ A AL+ L+ LDEP+ G+ P ++ I+ G ++L N
Sbjct: 139 GGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR 198
Query: 492 ECEALCTKLTIMVNGQFTCLGSA 514
+ + ++ NG+ G+A
Sbjct: 199 FALEIADRGYVLENGRIVLSGTA 221
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 41.4 bits (98), Expect = 7e-04
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 9/93 (9%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-----GRCVIL 485
LSGG +++L+ A AL+ L+ LDEPT G+ P + I R + G ++L
Sbjct: 132 LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPS----IIKDIGRVIRRLRAEGGMAILL 187
Query: 486 TSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 518
++ L + +M G+ G+ L
Sbjct: 188 VEQYLDFARELADRYYVMERGRVVASGAGDELD 220
Score = 35.2 bits (82), Expect = 0.065
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 101 LMGMLPVSSGTAKIYDHDIRTDMTT---IRRSLGVCPQYNALFDKLTVEE 147
LMG+LPV SG+ ++ DI T + R + PQ +F +LTVEE
Sbjct: 46 LMGLLPVKSGSIRLDGEDI-TKLPPHERARAGIAYVPQGREIFPRLTVEE 94
Score = 34.0 bits (79), Expect = 0.15
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
+LDEPT G+ P SI + + +V + G ++L Y+D A L DR ++ G
Sbjct: 154 LLDEPTEGIQP----SIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERG 208
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 42.4 bits (100), Expect = 7e-04
Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 489
TLSGG +++++ A A+L + P++ LDE TS +D + + + +E +GR ++ +H
Sbjct: 476 TLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETL-MKGRTTLIIAHR 534
Query: 490 MEECEALCTKLTIMVNGQFTCLGSATHLKSKYG 522
+ ++ +M G+ G+ L +K G
Sbjct: 535 LATVLK-ADRIVVMDQGRIVAQGTHAELIAKGG 566
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 42.4 bits (100), Expect = 7e-04
Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 425 DREVRTLSGGNKRKLSTAIAL------LGNTPLIFLDEPTSGMDPGARRFLWTCIERAVS 478
+R + LSGG + L A L GN PL+ LDEPT +D RR L +ER +
Sbjct: 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLR 842
Query: 479 EGRCVILTSHNME 491
+ VI+ SH+ E
Sbjct: 843 KIPQVIIVSHDEE 855
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 41.5 bits (97), Expect = 7e-04
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 410 IVNESLNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGA 465
IV SL + AL DR LSGG +++L A + +I +DEP S +DP +
Sbjct: 124 IVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPIS 183
Query: 466 RRFLWTCIERAVSEGRCVILTSHNMEE 492
+ IE + E +I+ +HNM++
Sbjct: 184 TLKIEELIEE-LKEKYTIIIVTHNMQQ 209
Score = 40.0 bits (93), Expect = 0.002
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 10/75 (13%)
Query: 276 VPASTVILDEPTSGVDPYSRRSIWELL--IKVYYASHSLSGRTVILTTHYMDEADLLGDR 333
V +++DEP S +DP S I EL+ +K Y T+I+ TH M +A + D
Sbjct: 165 VKPEVILMDEPASALDPISTLKIEELIEELKEKY--------TIIIVTHNMQQAARVSDY 216
Query: 334 IAIIAAGKLQCCGSS 348
A G L CG +
Sbjct: 217 TAFFYMGDLVECGET 231
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 41.0 bits (96), Expect = 8e-04
Identities = 22/78 (28%), Positives = 40/78 (51%)
Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 489
T+SGG ++ L+ AL+ L+ LDEP+ G+ P + ++ IE+ +G + L N
Sbjct: 137 TMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQN 196
Query: 490 MEECEALCTKLTIMVNGQ 507
+ L + ++ NG
Sbjct: 197 ANQALKLADRGYVLENGH 214
Score = 29.5 bits (66), Expect = 4.5
Identities = 26/109 (23%), Positives = 54/109 (49%), Gaps = 17/109 (15%)
Query: 98 RSMLMGML---PVSSGTAKIYDHDIRTDMTT---IRRSLGVCPQYNALFDKLTVEEHM-- 149
++ L+G L P ++ ++D TD T +R ++ + P+ +F ++TVEE++
Sbjct: 44 KTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAM 103
Query: 150 -WFYSQLKQVPKDLAQLEISNMIGDL--GIPHKRTSLANTLSGGMQRKL 195
F+++ Q + + + +L + +R A T+SGG Q+ L
Sbjct: 104 GGFFAERDQFQERIKW------VYELFPRLHERRIQRAGTMSGGEQQML 146
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 41.9 bits (99), Expect = 8e-04
Identities = 31/133 (23%), Positives = 67/133 (50%), Gaps = 1/133 (0%)
Query: 382 ALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLST 441
AL +T E++ F R++ P+ + V E+L L ++ R+ LSGG +++++
Sbjct: 96 ALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAI 155
Query: 442 AIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKL 500
A A++ ++ LDE S +D R+ + ++ + G + +H+ EE + ++
Sbjct: 156 ARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRI 215
Query: 501 TIMVNGQFTCLGS 513
+M +G+ G+
Sbjct: 216 VVMRDGRIEQDGT 228
Score = 31.8 bits (73), Expect = 1.0
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 283 LDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKL 342
LDE S +D Y R + +K A G T + TH +EA + DRI ++ G++
Sbjct: 168 LDESLSALD-YKLRKQMQNELK---ALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRI 223
Query: 343 QCCGS 347
+ G+
Sbjct: 224 EQDGT 228
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet.
Length = 200
Score = 40.6 bits (96), Expect = 0.001
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
SGG K++ LL L LDEP SG+D A R + I + EG+ V++ +H
Sbjct: 105 FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQ 164
Query: 491 EECEAL-CTKLTIMVNGQFTCLGSATHLKSKYGQGY 525
+ + ++ ++ +G+ G +GY
Sbjct: 165 RLLDYIKPDRVHVLYDGRIVKSGDKELALEIEKKGY 200
Score = 40.2 bits (95), Expect = 0.001
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 270 LFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADL 329
+ + + ILDEP SG+D + R + E++ G++V++ THY D
Sbjct: 115 ILQLLLLEPDLAILDEPDSGLDIDALRLVAEVI--NKLRE---EGKSVLIITHYQRLLDY 169
Query: 330 L-GDRIAIIAAGKLQCCGSSVFLKNSFARGY 359
+ DR+ ++ G++ G +GY
Sbjct: 170 IKPDRVHVLYDGRIVKSGDKELALEIEKKGY 200
>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 195
Score = 40.6 bits (95), Expect = 0.001
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 5/119 (4%)
Query: 370 QKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVR 429
K Y Y L +T E+L+F+S + N S + +++ F L D +
Sbjct: 68 AKPYCTYIGHNLGLKLEMTVFENLKFWSEIYN--SA---ETLYAAIHYFKLHDLLDEKCY 122
Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 488
+LS G ++ ++ A + + L LDE + + R L I + G V+L+SH
Sbjct: 123 SLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSH 181
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 40.8 bits (96), Expect = 0.001
Identities = 22/66 (33%), Positives = 36/66 (54%)
Query: 420 LGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE 479
LG + D LSGG K++++ A AL+ L+ DEPT+ +D + R + +++ E
Sbjct: 131 LGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLARE 190
Query: 480 GRCVIL 485
C IL
Sbjct: 191 QGCTIL 196
Score = 33.8 bits (78), Expect = 0.17
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 24/137 (17%)
Query: 71 DTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGML-PVSSGTAKIYDHDI---- 119
D +LE P GPSG G TL L+G L V G+ K+ ++
Sbjct: 23 DINLEINPGEIVILTGPSGS--GKTTL-------LTLIGGLRSVQEGSLKVLGQELYGAS 73
Query: 120 RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQ--VPKDLAQLEISNMIGDLGIP 177
++ +RR++G Q + L LT +++ +L+ ++ + + M+ +G+
Sbjct: 74 EKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARA-MLEAVGLG 132
Query: 178 HKRTSLANTLSGGM-QR 193
+ LSGG QR
Sbjct: 133 DHLDYYPHNLSGGQKQR 149
>gnl|CDD|213246 cd03279, ABC_sbcCD, ATP-binding cassette domain of sbcCD. SbcCD
and other Mre11/Rad50 (MR) complexes are implicated in
the metabolism of DNA ends. They cleave ends sealed by
hairpin structures and are thought to play a role in
removing protein bound to DNA termini.
Length = 213
Score = 40.3 bits (95), Expect = 0.001
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 10/88 (11%)
Query: 426 REVRTLSGGNKRKLSTAIAL--------LGNTPL--IFLDEPTSGMDPGARRFLWTCIER 475
R V TLSGG S ++AL G L +F+DE +DP A + T +E
Sbjct: 119 RPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALEL 178
Query: 476 AVSEGRCVILTSHNMEECEALCTKLTIM 503
+E R V + SH E E + +L ++
Sbjct: 179 IRTENRMVGVISHVEELKERIPQRLEVI 206
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 41.4 bits (98), Expect = 0.001
Identities = 48/155 (30%), Positives = 72/155 (46%), Gaps = 23/155 (14%)
Query: 368 APQKSYIGYCPQFDALNDRLTPREHLEFYSRVR-NLP-------SVLLNTIVNESLNKFA 419
P+K IGY Q DA RL P H Y +VR NL + IV +L
Sbjct: 72 PPEKRRIGYVFQ-DA---RLFP--H---Y-KVRGNLRYGMAKSMVAQFDKIV--AL--LG 117
Query: 420 LGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE 479
+ DR +LSGG K++++ ALL L+ +DEP + +D +R L +ER E
Sbjct: 118 IEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLARE 177
Query: 480 GRCVIL-TSHNMEECEALCTKLTIMVNGQFTCLGS 513
IL SH+++E L ++ ++ G+ G
Sbjct: 178 INIPILYVSHSLDEILRLADRVVVLEQGKVKAFGP 212
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 40.6 bits (95), Expect = 0.001
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 9/127 (7%)
Query: 407 LNTIVNESLNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
L+ +V SL AL DR LSGG +++L A + +I +DEPTS +D
Sbjct: 118 LDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALD 177
Query: 463 PGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL----K 518
P A + +E VI+T H+M++ + + + G+ + K
Sbjct: 178 PIATHKIEELMEELKKNYTIVIVT-HSMQQARRISDRTAFFLMGELVEHDDTQVIFSNPK 236
Query: 519 SKYGQGY 525
QGY
Sbjct: 237 DDRTQGY 243
Score = 39.8 bits (93), Expect = 0.002
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 10/64 (15%)
Query: 281 VILDEPTSGVDPYSRRSIWELL--IKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIA 338
+++DEPTS +DP + I EL+ +K Y T+++ TH M +A + DR A
Sbjct: 167 ILMDEPTSALDPIATHKIEELMEELKKNY--------TIVIVTHSMQQARRISDRTAFFL 218
Query: 339 AGKL 342
G+L
Sbjct: 219 MGEL 222
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 40.7 bits (95), Expect = 0.001
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 407 LNTIVNESLNKFALGHYSDREVR----TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
L+ IV +L K AL +++ LSGG +++L A + +I +DEPTS +D
Sbjct: 120 LDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALD 179
Query: 463 PGARRFLWTCIERAVSEGRCVILTSHNMEE 492
P + + + E VI+T HNM++
Sbjct: 180 PISTLKIEDLMVELKKEYTIVIVT-HNMQQ 208
Score = 38.8 bits (90), Expect = 0.005
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 276 VPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIA 335
V +++DEPTS +DP S I +L++++ T+++ TH M +A + D A
Sbjct: 164 VKPDVILMDEPTSALDPISTLKIEDLMVELK------KEYTIVIVTHNMQQASRVSDYTA 217
Query: 336 IIAAGKL 342
G L
Sbjct: 218 FFLMGDL 224
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 40.8 bits (95), Expect = 0.001
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 9/72 (12%)
Query: 272 AMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGR-TVILTTHYMDEADLL 330
AM+ P S +++DEP S +DP S + EL+ H L T+++ TH M +A +
Sbjct: 160 AMAVSP-SVLLMDEPASALDPISTAKVEELI-------HELKKDYTIVIVTHNMQQAARV 211
Query: 331 GDRIAIIAAGKL 342
D+ A G++
Sbjct: 212 SDKTAFFYMGEM 223
Score = 38.8 bits (90), Expect = 0.004
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
LSGG +++L A A+ + ++ +DEP S +DP + + I + VI+T HNM
Sbjct: 147 LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVT-HNM 205
Query: 491 EECEALCTK 499
++ + K
Sbjct: 206 QQAARVSDK 214
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina [Protein fate, Protein
and peptide secretion and trafficking].
Length = 221
Score = 40.4 bits (95), Expect = 0.001
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 413 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDP-GARRFLWT 471
E L K L H + LSGG +++++ A AL+ L+ DEPT +D A+
Sbjct: 124 EMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDL 183
Query: 472 CIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 507
+E ++ +H++E + L ++ M +GQ
Sbjct: 184 MLELNRELNTSFLVVTHDLELAKKL-DRVLEMKDGQ 218
Score = 29.2 bits (66), Expect = 4.5
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 279 STVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIA 338
S V+ DEPT +D + + I++L++++ + + ++ TH ++ A L DR+ +
Sbjct: 161 SLVLADEPTGNLDNNNAKIIFDLMLEL----NRELNTSFLVVTHDLELAKKL-DRVLEMK 215
Query: 339 AGKL 342
G+L
Sbjct: 216 DGQL 219
>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 40.9 bits (96), Expect = 0.001
Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 11/93 (11%)
Query: 407 LNTIVNESLNKFAL-GHYSDR--EVRT-LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
L+ IV SL K L DR E T LSGG +++L A A+ + +I +DEP S +D
Sbjct: 136 LDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALD 195
Query: 463 PGARRFLWTCIERAVSEGR---CVILTSHNMEE 492
P A +E + E R +++ +H+M++
Sbjct: 196 PIAT----AKVEELIDELRQNYTIVIVTHSMQQ 224
Score = 36.2 bits (84), Expect = 0.031
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 281 VIL-DEPTSGVDPYSRRSIWELLIKVYYASHSLSGR-TVILTTHYMDEADLLGDRIAIIA 338
VIL DEP S +DP + + EL+ L T+++ TH M +A + R A
Sbjct: 184 VILMDEPCSALDPIATAKVEELI-------DELRQNYTIVIVTHSMQQAARVSQRTAFFH 236
Query: 339 AGKL 342
G L
Sbjct: 237 LGNL 240
>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase
[Posttranslational modification, protein turnover,
chaperones].
Length = 251
Score = 40.3 bits (95), Expect = 0.001
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 423 YSDREV-RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR 481
+ +R V SGG K++ LL L LDEP SG+D A + + I EGR
Sbjct: 136 FLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGR 195
Query: 482 CVILTSHNMEECEAL-CTKLTIMVNGQFTCLG 512
V++ +H + + K+ ++ +G+ G
Sbjct: 196 GVLIITHYQRLLDYIKPDKVHVLYDGRIVKSG 227
Score = 37.2 bits (87), Expect = 0.015
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLG-DRIAIIAA 339
ILDEP SG+D + + + E + GR V++ THY D + D++ ++
Sbjct: 166 AILDEPDSGLDIDALKIVAEGI--NALRE---EGRGVLIITHYQRLLDYIKPDKVHVLYD 220
Query: 340 GKLQCCG 346
G++ G
Sbjct: 221 GRIVKSG 227
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 40.4 bits (94), Expect = 0.001
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 403 PSVLLNTIVNESLNKFAL----GHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPT 458
P + ++ IV +L L H + LSGG +++L A AL ++ +DEP
Sbjct: 119 PKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPC 178
Query: 459 SGMDPGARRFLWTCIE--RAVSEGRCVILTSHNMEE 492
G+DP A + + I+ R SE VI++ HN+ +
Sbjct: 179 FGLDPIASMKVESLIQSLRLRSELTMVIVS-HNLHQ 213
Score = 29.6 bits (66), Expect = 4.2
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 276 VPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGR---TVILTTHYMDEADLLGD 332
V +++DEP G+DP + + L+ SL R T+++ +H + + L D
Sbjct: 167 VKPKVLLMDEPCFGLDPIASMKVESLI-------QSLRLRSELTMVIVSHNLHQVSRLSD 219
Query: 333 RIA 335
A
Sbjct: 220 FTA 222
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 39.9 bits (94), Expect = 0.002
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 488
LS G ++ L+ A A+L + ++ LDE TS +D + + +E+ + +GR I+ +H
Sbjct: 139 NLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEK-LMKGRTSIIIAH 196
Score = 31.8 bits (73), Expect = 0.76
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Query: 272 AMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTH 322
AM P +ILDE TS +D + + I E L K+ + GRT I+ H
Sbjct: 153 AMLRDP-KILILDEATSNIDTETEKLIQEALEKL------MKGRTSIIIAH 196
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 40.1 bits (94), Expect = 0.002
Identities = 22/83 (26%), Positives = 46/83 (55%), Gaps = 9/83 (10%)
Query: 417 KFALGHYSDREVR--TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIE 474
+ A G+ ++ + LSGG K++++ A AL+ N ++ LDE TS +D + + ++
Sbjct: 135 ELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQ----QVQ 190
Query: 475 RAVSEG---RCVILTSHNMEECE 494
+A+ + R V++ +H + E
Sbjct: 191 QALYDWPERRTVLVIAHRLSTVE 213
Score = 28.6 bits (64), Expect = 8.6
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
+ILDE TS +D S + + + L RTV++ H + + D+I ++ G
Sbjct: 172 LILDEATSALDAESEQQVQQAL------YDWPERRTVLVIAHRLSTVE-RADQILVLDGG 224
Query: 341 KL 342
++
Sbjct: 225 RI 226
>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
subunit; Provisional.
Length = 264
Score = 39.8 bits (93), Expect = 0.002
Identities = 31/144 (21%), Positives = 61/144 (42%), Gaps = 6/144 (4%)
Query: 383 LNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTA 442
L+ +LT E++EF + + + + LG + + V+ S G + KL +
Sbjct: 96 LSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFS 155
Query: 443 IALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAV---SEGRCVILTSHNMEECEALCTK 499
I + N ++ +DE S G + F C+++ + + + SHN+ + CTK
Sbjct: 156 INITVNPDILVIDEALS---VGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTK 212
Query: 500 LTIMVNGQFTCLGSATHLKSKYGQ 523
+ + G+ G + KY
Sbjct: 213 IAWIEGGKLKDYGELDDVLPKYEA 236
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 39.6 bits (92), Expect = 0.002
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGAR---RFLWTCIERAVSEGRCVILTS 487
LSGG +++L A AL ++ +DEPTS +DP + L T +++ + +I+ +
Sbjct: 149 LSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTT----IIIVT 204
Query: 488 HNMEECEALCTKLTIMVNGQFTCLGSATHL 517
HNM + + + + G G L
Sbjct: 205 HNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234
Score = 35.0 bits (80), Expect = 0.071
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 276 VPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIA 335
V +++DEPTS +DP S I +L+ + + T+I+ TH M +A + D +
Sbjct: 165 VEPEILLMDEPTSALDPASTARIEDLMTDLKKVT------TIIIVTHNMHQAARVSDTTS 218
Query: 336 IIAAGKL 342
G L
Sbjct: 219 FFLVGDL 225
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 40.5 bits (95), Expect = 0.003
Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 488
LSGG +++L+ A ALL N P++ LDE TS +D + +++ + +GR ++ +H
Sbjct: 464 VNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKK-LLKGRTTLIIAH 522
Query: 489 NMEECEALCTKLTIMVNGQ 507
+ ++ ++ NG+
Sbjct: 523 RLST-IKNADRIIVLDNGR 540
Score = 34.3 bits (79), Expect = 0.17
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
+ILDE TS +D + I + L K+ L GRT ++ H + DRI ++ G
Sbjct: 487 LILDEATSALDTETEALIQDALKKL------LKGRTTLIIAHRLSTI-KNADRIIVLDNG 539
Query: 341 KL 342
++
Sbjct: 540 RI 541
Score = 29.3 bits (66), Expect = 6.8
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 101 LMGMLPVSSGTAKIYDHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEE 147
L+ + +SG I DIR + ++R+ +G+ Q LF T+ E
Sbjct: 375 LLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSG-TIRE 421
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 39.7 bits (92), Expect = 0.003
Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW 470
V+E+L + + RE LSGG K++++ A + +I LDE TS +DP R+ +
Sbjct: 121 VDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIM 180
Query: 471 TCIERAVSEGRCVILT-SHNMEECEALCTKLTIMVNGQ 507
I + + +L+ +H+++E A ++ +M G+
Sbjct: 181 RVIHEIKEKYQLTVLSITHDLDEA-ASSDRILVMKAGE 217
Score = 38.2 bits (88), Expect = 0.007
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 12/113 (10%)
Query: 230 VSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSG 289
+ R D A++A+N T + L G VAV + A+ +ILDE TS
Sbjct: 118 IKRVDEALLAVNMLDFKTREPARLS----GGQKQRVAVAGIIALR---PEIIILDESTSM 170
Query: 290 VDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKL 342
+DP R+ I ++ ++ TV+ TH +DEA DRI ++ AG++
Sbjct: 171 LDPTGRQEIMRVIHEIKEKYQ----LTVLSITHDLDEA-ASSDRILVMKAGEI 218
>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the
excision repair protein UvrA. Nucleotide excision
repair in eubacteria is a process that repairs DNA
damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins and UvrB having one ATP binding
site that is structurally related to that of helicases.
Length = 261
Score = 39.5 bits (93), Expect = 0.003
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 430 TLSGGNKRKLSTAIALL----GNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL 485
TLSGG +++ A L G T L LDEPT+G+ + L ++R V +G V++
Sbjct: 169 TLSGGEAQRIKLAKELSKRSTGKT-LYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVV 227
Query: 486 TSHNME 491
HN++
Sbjct: 228 IEHNLD 233
>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 39.7 bits (93), Expect = 0.003
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 16/85 (18%)
Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW 470
V + L+K AL TLSGG +++L A A+ ++ +DEP S +DP +
Sbjct: 153 VKDDLHKSAL---------TLSGGQQQRLCIARAIAVKPDILLMDEPASALDPIST---- 199
Query: 471 TCIERAVSEGR---CVILTSHNMEE 492
+E + E + +I+ +HNM++
Sbjct: 200 MQLEETMFELKKNYTIIIVTHNMQQ 224
Score = 32.8 bits (75), Expect = 0.40
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
+++DEP S +DP S + E + ++ T+I+ TH M +A D A G
Sbjct: 185 LLMDEPASALDPISTMQLEETMFELK------KNYTIIIVTHNMQQAARASDYTAFFYLG 238
Query: 341 KL 342
L
Sbjct: 239 DL 240
>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit. This family is a
member of the ABC transporter superfamily of proteins of
which all members for which functions are known except
the UvrA proteins are involved in the transport of
material through membranes. UvrA orthologs are involved
in the recognition of DNA damage as a step in nucleotide
excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 925
Score = 40.4 bits (95), Expect = 0.003
Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 12/116 (10%)
Query: 380 FDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKL 439
D L+ +T E EF+ V ++ S L T+ + L LG + TLSGG +++
Sbjct: 786 ADVLD--MTVEEAYEFFEAVPSI-SRKLQTLCDVGLGYIRLG----QPATTLSGGEAQRI 838
Query: 440 STAIALL----GNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 491
A L G T L LDEPT+G+ + L ++R V +G V++ HN++
Sbjct: 839 KLAKELSKRSTGRT-LYILDEPTTGLHFDDIKKLLEVLQRLVDKGNTVVVIEHNLD 893
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 39.4 bits (92), Expect = 0.003
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 10/64 (15%)
Query: 281 VILDEPTSGVDPYSRRSIWELL--IKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIA 338
+++DEPT+ +DP I ELL +K Y T++L TH +A + D +A +
Sbjct: 171 LLMDEPTANIDPVGTAKIEELLFELKKEY--------TIVLVTHSPAQAARVSDYVAFLY 222
Query: 339 AGKL 342
GKL
Sbjct: 223 LGKL 226
Score = 36.4 bits (84), Expect = 0.026
Identities = 48/185 (25%), Positives = 71/185 (38%), Gaps = 36/185 (19%)
Query: 303 IKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLS 362
++VYY S+ H + DL + + A CG S L+ +F R L+
Sbjct: 10 LRVYYGSN-----------HVIKGVDLKIPQNGVFALMGPSGCGKSTLLR-TFNRLLELN 57
Query: 363 LDMKSAPQKSYIG---YCPQFDALNDRL---------TPREHLEFYSRV------RNL-- 402
+ + + G Y P D + R P HL Y V L
Sbjct: 58 EEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVK 117
Query: 403 PSVLLNTIVNESLNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNTPLIFLDEPT 458
L+ V +L K AL DR LSGG +++L A AL ++ +DEPT
Sbjct: 118 SKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPT 177
Query: 459 SGMDP 463
+ +DP
Sbjct: 178 ANIDP 182
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 39.2 bits (91), Expect = 0.004
Identities = 18/52 (34%), Positives = 32/52 (61%)
Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
V +++ + H +D+ V TLSGG +++ A+ L T ++ LDEPT+ +D
Sbjct: 124 VTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 39.4 bits (92), Expect = 0.004
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW 470
V E+++ L + R V +LSGG +++ A+ + ++ + LDEPTS +D + +
Sbjct: 128 VEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVL 187
Query: 471 TCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 517
+ R E G VI H++ C L + G+ G+ L
Sbjct: 188 ALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235
>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 39.4 bits (92), Expect = 0.004
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERA-VSEGRCVILTSHN 489
L+ G +K+ AIAL L+ DEPT+ M+P + ++ + R + ++L SH+
Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHD 218
Query: 490 MEECEALCTKLTIMVNGQ 507
++ K+ ++ GQ
Sbjct: 219 LQMISQWADKINVLYCGQ 236
Score = 32.1 bits (73), Expect = 0.71
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
+I DEPT+ ++P ++ I+ LL ++ + S T++L +H + D+I ++ G
Sbjct: 180 LIADEPTNSMEPTTQAQIFRLLSRL----NQNSNTTILLISHDLQMISQWADKINVLYCG 235
Query: 341 K 341
+
Sbjct: 236 Q 236
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form (CCALD),
the milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic).
Length = 166
Score = 38.3 bits (90), Expect = 0.004
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFL 469
LSGG +++L+ A LL +FLDE TS +D + L
Sbjct: 90 DVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRL 130
>gnl|CDD|222219 pfam13558, SbcCD_C, Putative exonuclease SbcCD, C subunit.
Possible exonuclease SbcCD, C subunit, on AAA proteins.
Length = 79
Score = 36.0 bits (84), Expect = 0.004
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 12/56 (21%)
Query: 426 REVRTLSGGNKRKL-STAIAL--------LGNTP---LIFLDEPTSGMDPGARRFL 469
R+ TLSGG K+ L A+A P LIFLDE + +D R L
Sbjct: 18 RDSGTLSGGEKQVLAYLALAAALAAQYGSNRGGPAPRLIFLDEAFAKLDEENIRSL 73
Score = 28.7 bits (65), Expect = 1.5
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 280 TVILDEPTSGVDPYSRRSIWELL 302
+ LDE + +D + RS+ ELL
Sbjct: 55 LIFLDEAFAKLDEENIRSLLELL 77
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 38.6 bits (90), Expect = 0.005
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
LSGG +++++ A AL+ N ++ DE TS +D + + + + GR VI+ +H +
Sbjct: 139 LSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNM-HDICAGRTVIIIAHRL 197
Score = 34.0 bits (78), Expect = 0.16
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
+I DE TS +D S +I + + +GRTVI+ H + DRI ++ G
Sbjct: 160 LIFDEATSALDYESEHAIMRNMHDI------CAGRTVIIIAHRL-STVKNADRIIVMEKG 212
Query: 341 KLQCCGSSVFLKNSFARGYYLSL 363
++ GS L G Y L
Sbjct: 213 RIVEQGSHDELLAE--NGLYAYL 233
Score = 28.6 bits (64), Expect = 7.7
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 100 MLMGMLPVSSGTAKIYDHDIRT-DMTTIRRSLGVCPQYNALFDK 142
++ +G + HD+ D +RR +GV Q N LF++
Sbjct: 47 LIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNR 90
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 38.4 bits (90), Expect = 0.005
Identities = 23/82 (28%), Positives = 48/82 (58%), Gaps = 9/82 (10%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWT-----CIERAVSEGRCVIL 485
LSGG +++++ A L+ P++ LDEP S +DP R+ + T C ER ++ +++
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLT----LLM 185
Query: 486 TSHNMEECEALCTKLTIMVNGQ 507
SH++E+ + + ++ +G+
Sbjct: 186 VSHSLEDAARIAPRSLVVADGR 207
Score = 29.9 bits (68), Expect = 3.2
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNA 138
LGPSG G TL +++ G L +SG+ + D T RR + + Q N
Sbjct: 31 LGPSGA--GKSTL------LNLIAGFLTPASGSLTLNGQD-HTTTPPSRRPVSMLFQENN 81
Query: 139 LFDKLTVEE 147
LF LTV +
Sbjct: 82 LFSHLTVAQ 90
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 38.8 bits (90), Expect = 0.005
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGA-RRFLWTCIERAVSEGRCVILTSH 488
+LSGG +++L A A+ ++ LDEP S +DP A RR +E + + + L +H
Sbjct: 149 SLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVE--LKKDYTIALVTH 206
Query: 489 NMEE 492
NM++
Sbjct: 207 NMQQ 210
Score = 35.4 bits (81), Expect = 0.068
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 279 STVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIA 338
++LDEP S +DP + R + EL++++ T+ L TH M +A + D A +
Sbjct: 169 EVLLLDEPCSALDPIATRRVEELMVELK------KDYTIALVTHNMQQAIRVADTTAFFS 222
>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 38.6 bits (90), Expect = 0.006
Identities = 40/133 (30%), Positives = 58/133 (43%), Gaps = 12/133 (9%)
Query: 390 REHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRK--LSTAIALLG 447
REH LP+ LL++ V L L + LSGG R+ L+ AIAL
Sbjct: 110 REH-------TQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIAL-- 160
Query: 448 NTPLIFLDEPTSGMDPGARRFLWTCI-ERAVSEGRCVILTSHNMEECEALCTKLTIMVNG 506
LI DEP G DP L I E + G ++ SH++ E ++ I+ +
Sbjct: 161 EPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADK 220
Query: 507 QFTCLGSATHLKS 519
+ GSA L++
Sbjct: 221 KIVAHGSAQALQA 233
Score = 29.7 bits (67), Expect = 3.6
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 13/121 (10%)
Query: 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDI----RTDMTTIRRSLGVCP 134
+GPSGI G TL ++ G + G +I R+ + T+R+ + +
Sbjct: 39 MGPSGI--GKTTL------LRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLF 90
Query: 135 QYNALFDKLTVEEHM-WFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQR 193
Q ALF + V +++ + + Q+P L + + +G+ + + LSGGM R
Sbjct: 91 QSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMAR 150
Query: 194 K 194
+
Sbjct: 151 R 151
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 38.9 bits (91), Expect = 0.006
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 488
LSGG K++++ A +L N P++ LDE TS +D + + + VS GR ++ +H
Sbjct: 400 LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALRE-VSAGRTTLVIAH 456
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 38.5 bits (90), Expect = 0.007
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 10/64 (15%)
Query: 281 VILDEPTSGVDPYSRRSIWELL--IKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIA 338
++LDEP S +DP S I EL+ +K Y TV++ TH M +A D A +
Sbjct: 178 LLLDEPCSALDPISTGRIEELITELKQDY--------TVVIVTHNMQQAARCSDYTAFMY 229
Query: 339 AGKL 342
G+L
Sbjct: 230 LGEL 233
Score = 35.8 bits (83), Expect = 0.052
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 11/67 (16%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDP--GARRFLWTCIERAVSEGR---CVIL 485
LSGG +++L A + ++ LDEP S +DP R IE ++E + V++
Sbjct: 157 LSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGR------IEELITELKQDYTVVI 210
Query: 486 TSHNMEE 492
+HNM++
Sbjct: 211 VTHNMQQ 217
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 38.4 bits (89), Expect = 0.007
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 407 LNTIVNESLNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
L+ +V +L AL SDR +LSGG +++L A L +I DEPTS +D
Sbjct: 127 LDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALD 186
Query: 463 PGARRFLWTCIERAVSEGRCVILTSHNMEE 492
P + + I + VI+T HNM++
Sbjct: 187 PISTARIEDLIMNLKKDYTIVIVT-HNMQQ 215
Score = 36.9 bits (85), Expect = 0.022
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 276 VPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIA 335
V ++ DEPTS +DP S I +L++ + T+++ TH M +A + D
Sbjct: 171 VKPKIILFDEPTSALDPISTARIEDLIMNLK------KDYTIVIVTHNMQQAARISDYTG 224
Query: 336 IIAAGKL 342
G+L
Sbjct: 225 FFLMGEL 231
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 38.6 bits (90), Expect = 0.009
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
LSGG K++++ A AL+ ++ LDE TS +D + L RA R V+L +H +
Sbjct: 618 LSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRA---SRTVLLIAHRL 674
Query: 491 EECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVK 528
E ++ ++ G +G+ L G +
Sbjct: 675 STVER-ADQILVLKKGSVVEMGTHKQLMEDQGCYKHLV 711
Score = 28.9 bits (65), Expect = 9.0
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 8/41 (19%)
Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTH 322
ILDE TS +D + + S S + RTV+L H
Sbjct: 640 ILDEATSALDAECEQLL--------QESRSRASRTVLLIAH 672
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 38.0 bits (88), Expect = 0.009
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Query: 272 AMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLG 331
A++F P ++ DEPT+ +DP + I L +++ T++L TH+ +A +
Sbjct: 160 ALAFQP-EVLLADEPTANLDPENTAKIESLFLELK------KDMTIVLVTHFPQQAARIS 212
Query: 332 DRIAIIAAGKL 342
D +A + G++
Sbjct: 213 DYVAFLYKGQI 223
Score = 34.5 bits (79), Expect = 0.11
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDP 463
LSGG +++L A AL ++ DEPT+ +DP
Sbjct: 147 LSGGQQQRLCIARALAFQPEVLLADEPTANLDP 179
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 38.5 bits (90), Expect = 0.010
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL-TS 487
+LS G +R AL+ + L+ LDEP G+DP R+ + ++ +SEG +L S
Sbjct: 400 HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVS 459
Query: 488 HNMEE 492
H+ E+
Sbjct: 460 HHAED 464
Score = 35.8 bits (83), Expect = 0.070
Identities = 23/96 (23%), Positives = 39/96 (40%)
Query: 417 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERA 476
+F + DR + LS G RK AL+ L+ LDEP G+D +R+ L +
Sbjct: 122 QFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASL 181
Query: 477 VSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLG 512
G ++L + +E ++ + G
Sbjct: 182 HQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETG 217
Score = 30.0 bits (68), Expect = 4.1
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIA 338
ILDEP G+D SR+ + ELL AS SG T++L + DE ++A
Sbjct: 158 ILDEPFDGLDVASRQQLAELL-----ASLHQSGITLVLVLNRFDEIPDFVQFAGVLA 209
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 38.3 bits (89), Expect = 0.010
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
LSGG +++L+ A A+L N P++ LDE TS +D
Sbjct: 472 LSGGERQRLAIARAILKNAPILVLDEATSALD 503
>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the
sulfonylurea receptor, subfamily C. The SUR domain 1.
The sulfonylurea receptor SUR is an ATP transporter of
the ABCC/MRP family with tandem ATPase binding domains.
Unlike other ABC proteins, it has no intrinsic transport
function, neither active nor passive, but associates
with the potassium channel proteins Kir6.1 or Kir6.2 to
form the ATP-sensitive potassium (K(ATP)) channel.
Within the channel complex, SUR serves as a regulatory
subunit that fine-tunes the gating of Kir6.x in response
to alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 218
Score = 37.7 bits (87), Expect = 0.010
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
LSGG ++++ A AL NT ++FLD+P S +D
Sbjct: 141 LSGGQRQRICVARALYQNTNIVFLDDPFSALD 172
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 265
Score = 37.9 bits (88), Expect = 0.010
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE----- 479
D+ R LSGG ++++ A AL LI LDE S +D L I + +
Sbjct: 145 DKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLD----MVLQAVILELLRKLQQAF 200
Query: 480 GRCVILTSHNMEECEALCTKLTIMVNGQ 507
G + +H++ ++ C ++ +M GQ
Sbjct: 201 GTAYLFITHDLRLVQSFCQRVAVMDKGQ 228
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 37.8 bits (88), Expect = 0.010
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
DREV LSGG ++++ A L + + LDEP++ +D
Sbjct: 110 DREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLD 147
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 38.5 bits (90), Expect = 0.010
Identities = 15/32 (46%), Positives = 25/32 (78%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
LSGG +++++ A ALL ++P++ LDE TS +D
Sbjct: 481 LSGGQRQRIAIARALLRDSPILILDEATSALD 512
>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PMID:12554644) or associated with the
membrane (PMID:11943156). The SUF system also includes a
cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA [Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 243
Score = 37.6 bits (88), Expect = 0.012
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 423 YSDREVRT-LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR 481
+ +R V SGG K++ L L LDE SG+D A + + I R R
Sbjct: 136 FLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDR 195
Query: 482 CVILTSHN 489
++ +H
Sbjct: 196 SFLIITHY 203
Score = 28.8 bits (65), Expect = 8.0
Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 270 LFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADL 329
+ M+ + ILDE SG+D + + + E + + R+ ++ THY +
Sbjct: 155 ILQMALLEPKLAILDEIDSGLDIDALKIVAEGINR--LRE---PDRSFLIITHYQRLLNY 209
Query: 330 LG-DRIAIIAAGK 341
+ D + ++ G+
Sbjct: 210 IKPDYVHVLLDGR 222
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 37.5 bits (87), Expect = 0.013
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGR-TVILTTHYMDEADLLGDRIA 335
+++DEP S +DP S I EL+ H L + T+I+ TH M +A + D A
Sbjct: 173 ILMDEPCSALDPISTLRIEELM-------HELKEQYTIIIVTHNMQQAARVSDMTA 221
Score = 36.7 bits (85), Expect = 0.024
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 407 LNTIVNESLNKFALGHYSDREVRT----LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
++ +V SL + AL +++ LSGG +++L A A+ +I +DEP S +D
Sbjct: 124 MDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALD 183
Query: 463 PGARRFLWTCIERAVSEGRCVILTSHNMEE 492
P + + + + +I+T HNM++
Sbjct: 184 PISTLRIEELMHELKEQYTIIIVT-HNMQQ 212
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 37.3 bits (87), Expect = 0.014
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 415 LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIE 474
L + L +++R+ L+ G +R+L A ++ ++ LDEP +G++P + L I
Sbjct: 138 LERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIA 197
Query: 475 RAVSE-GRCVILTSHNM 490
+E V+L H+M
Sbjct: 198 ELRNEHNVTVLLIEHDM 214
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 37.3 bits (87), Expect = 0.014
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHN 489
LSGG K++++ A AL+ L+ LDEP +D R + IE + G V+L +H+
Sbjct: 134 LSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHD 193
Query: 490 MEECEALCTKLTIMVNGQ 507
+ E A+ ++ ++ G+
Sbjct: 194 VSEAVAMADRVLLIEEGK 211
Score = 34.3 bits (79), Expect = 0.12
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGK 341
+LDEP +D +R + +L I+ + H G TV+L TH + EA + DR+ +I GK
Sbjct: 156 LLDEPLGALDALTRIEMQDL-IESLWQQH---GFTVLLVTHDVSEAVAMADRVLLIEEGK 211
Query: 342 L 342
+
Sbjct: 212 I 212
>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 37.9 bits (88), Expect = 0.014
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGRCVILTSHN 489
LS G K++L+ +ALL ++ LDE + DP RR + + +G+ + SH+
Sbjct: 449 LSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHD 508
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 38.2 bits (89), Expect = 0.015
Identities = 17/54 (31%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 411 VNESLNKFALGHYSD--REVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
+ + + LG+ ++ E ++SGG K++++ A ALL ++ ++ LDE TS +D
Sbjct: 590 IKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLD 643
Score = 34.7 bits (80), Expect = 0.15
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 276 VPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIA 335
+ +ILDE TS +D + + I L+ L +T+I H + A D+I
Sbjct: 628 TDSKVLILDESTSNLDTITEKKIVNNLLN-------LQDKTIIFVAHRLSVAKQS-DKII 679
Query: 336 IIAAGKLQCCGSSVFLKNSFARGYYLSL 363
++ GK+ GS L + G+Y SL
Sbjct: 680 VLDHGKIIEQGSHDELLD--RNGFYASL 705
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 37.9 bits (89), Expect = 0.015
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 404 SVLLNTIVNESLNKFALG-HY--SDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSG 460
L N V+E L G D+ LS G ++L+ A ALL L+ LDEPT+
Sbjct: 457 QALENAWVSEFLPLLPQGLDTPIGDQAAG-LSVGQAQRLALARALLQPCQLLLLDEPTAS 515
Query: 461 MDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 507
+D + + + + A S + ++ +H +E+ ++ +M +GQ
Sbjct: 516 LDAHSEQLVMQALNAA-SRRQTTLMVTHQLEDLAQ-WDQIWVMQDGQ 560
Score = 32.5 bits (75), Expect = 0.74
Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 9/67 (13%)
Query: 277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLG-DRIA 335
P ++LDEPT+ +D +S + + + L AS +T ++ TH ++ DL D+I
Sbjct: 503 PCQLLLLDEPTASLDAHSEQLVMQALNA---ASR---RQTTLMVTHQLE--DLAQWDQIW 554
Query: 336 IIAAGKL 342
++ G++
Sbjct: 555 VMQDGQI 561
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 37.8 bits (88), Expect = 0.016
Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 432 SGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV-ILTSHNM 490
SGG +++++ A AL+ LI LDEPTS +D + + ++ + + + SH++
Sbjct: 427 SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDL 486
Query: 491 EECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYS 526
ALC ++ ++ G+ G + + Q Y+
Sbjct: 487 HVVRALCHQVIVLRQGEVVEQGDCERVFAAPQQEYT 522
Score = 32.8 bits (75), Expect = 0.66
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
LSGG ++++ A+ALL L+ DEPT+ +D
Sbjct: 157 LSGGERQRVMIAMALLTRPELLIADEPTTALD 188
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 37.2 bits (87), Expect = 0.017
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTS 487
T SGG +++L A L+ + L+F+DEPT G+D + L + V E G V++ +
Sbjct: 150 TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVT 209
Query: 488 HNMEECEALCTKLTIMVNGQ 507
H++ L +L +M G+
Sbjct: 210 HDLAVARLLAHRLLVMKQGR 229
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 37.4 bits (87), Expect = 0.017
Identities = 21/70 (30%), Positives = 36/70 (51%)
Query: 398 RVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEP 457
++ +P V E+L L + DR V +SGG +++++ A AL+ ++ DEP
Sbjct: 104 KMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEP 163
Query: 458 TSGMDPGARR 467
S +D RR
Sbjct: 164 LSNLDANLRR 173
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 37.4 bits (87), Expect = 0.017
Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 7/139 (5%)
Query: 374 IGYCPQFDALNDRLTPREHLEFYSRV---RNLPSV-LLNTIVNESLNKFALGHYSDREVR 429
+G+ Q AL +T +++ F V R P+ + V + L L H +DR
Sbjct: 76 VGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPA 135
Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR--CVILTS 487
LSGG K++++ A AL ++ LDEP +D R+ L + + E + V +T
Sbjct: 136 QLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVT- 194
Query: 488 HNMEECEALCTKLTIMVNG 506
H+ EE + ++ +M G
Sbjct: 195 HDQEEAMEVADRVVVMSQG 213
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 37.0 bits (85), Expect = 0.019
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 407 LNTIVNESLNKFALGHYSDREVR----TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
L+ +V +SL + AL + LSGG +++L A L +I +DEP S +D
Sbjct: 120 LDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALD 179
Query: 463 PGARRFLWTCIERAVSEGRCVILTSHNMEE 492
P + + ++ + + + + +HNM++
Sbjct: 180 PVSTMRIEELMQE-LKQNYTIAIVTHNMQQ 208
Score = 34.7 bits (79), Expect = 0.10
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Query: 276 VPASTVILDEPTSGVDPYSRRSIWELL--IKVYYASHSLSGRTVILTTHYMDEADLLGDR 333
+ +++DEP S +DP S I EL+ +K Y T+ + TH M +A D
Sbjct: 164 IEPEVILMDEPCSALDPVSTMRIEELMQELKQNY--------TIAIVTHNMQQAARASDW 215
Query: 334 IAIIAAGKL 342
+ G L
Sbjct: 216 TGFLLTGDL 224
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 37.1 bits (86), Expect = 0.020
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERA-VSEGRCVILTSHN 489
L+ G +K+ AIAL L+ DEPT+ M+P + ++ + R + ++L SH+
Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHD 218
Query: 490 MEECEALCTKLTIMVNGQ 507
++ K+ ++ GQ
Sbjct: 219 LQMLSQWADKINVLYCGQ 236
Score = 29.4 bits (66), Expect = 5.7
Identities = 15/61 (24%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
+I DEPT+ ++P ++ I+ LL ++ + + T++L +H + D+I ++ G
Sbjct: 180 LIADEPTNAMEPTTQAQIFRLLTRL----NQNNNTTILLISHDLQMLSQWADKINVLYCG 235
Query: 341 K 341
+
Sbjct: 236 Q 236
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another.
Length = 238
Score = 36.4 bits (85), Expect = 0.028
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 488
LSGG K++++ A ALL N ++ LDE TS +D + + + ++RA +GR I+ +H
Sbjct: 139 QLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRA-MKGRTTIVIAH 196
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 37.0 bits (86), Expect = 0.029
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 412 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWT 471
E L + L + + LSGG ++++S A AL+ +I DEPT +D + +
Sbjct: 126 QELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMA 185
Query: 472 CIERAVSEGRCVILTSHN 489
+ + G VI+ +H+
Sbjct: 186 ILHQLRDRGHTVIIVTHD 203
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 36.3 bits (84), Expect = 0.030
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 413 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTC 472
E L+ L +D LSGG +++++ A AL ++ DE TS +DP +
Sbjct: 129 ELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNV 188
Query: 473 IERAVSEGR-CVILTSHNM 490
I R SE ++L +H M
Sbjct: 189 IRRLASEHDLTMLLVTHEM 207
Score = 30.2 bits (68), Expect = 2.9
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Query: 265 VAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELL--IKVYYASHSLSGRTVILTTH 322
VA+ AM ++ DE TS +DP + E+L I+ + H L T++L TH
Sbjct: 155 VAIARALAMR---PKVMLFDEVTSALDP---ELVGEVLNVIRRLASEHDL---TMLLVTH 205
Query: 323 YMDEADLLGDRIAIIAAGKL 342
M A DR+ G++
Sbjct: 206 EMGFAREFADRVCFFDKGRI 225
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1);
Provisional.
Length = 1466
Score = 36.9 bits (85), Expect = 0.032
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAV-SEGRCVILTSHN 489
LSGG K+++S A A++ N ++ LDE TS +D + + I +E R I+ +H
Sbjct: 580 LSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHR 639
Query: 490 M 490
+
Sbjct: 640 L 640
Score = 36.2 bits (83), Expect = 0.069
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFL 469
++LSGG K++++ A ALL ++ LDE TS +D + + +
Sbjct: 1357 KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLI 1397
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 35.9 bits (84), Expect = 0.038
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDE-ADLLGDRIAIIAA 339
++LDE T+ VDP + I + + + TV+ H +D D DRI ++
Sbjct: 161 LVLDEATASVDPETDALIQKTI------REAFKDCTVLTIAHRLDTIIDS--DRILVLDK 212
Query: 340 GKLQCCGS 347
G++ S
Sbjct: 213 GRVVEFDS 220
Score = 34.8 bits (81), Expect = 0.087
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDP 463
LS G ++ L A ALL + ++ LDE T+ +DP
Sbjct: 140 LSVGQRQLLCLARALLRKSKILVLDEATASVDP 172
Score = 31.3 bits (72), Expect = 1.1
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 101 LMGMLPVSSGTAKIYDHDIRT-DMTTIRRSLGVCPQYNALFD 141
L ++ +SSG+ I DI + +R + + PQ LF
Sbjct: 50 LFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFS 91
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 35.8 bits (83), Expect = 0.041
Identities = 27/104 (25%), Positives = 50/104 (48%)
Query: 413 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTC 472
+ L + L Y+DR LSGG +++++ A AL+ ++ DEPT+ +DP + +
Sbjct: 124 KLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSI 183
Query: 473 IERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATH 516
I G ++ +H +E +++ M NG G A+
Sbjct: 184 IRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 36.4 bits (85), Expect = 0.042
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE--GRC 482
D +V LSGG +R+++ LL ++ LDEPT+ +D A W +E+ + E G
Sbjct: 156 DADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLD--AESVAW--LEQHLQEYPG-T 210
Query: 483 VILTSH 488
V+ +H
Sbjct: 211 VVAVTH 216
Score = 31.4 bits (72), Expect = 1.3
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 428 VRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILT 486
V LSGG + ++ A L ++ LDEPT+ +D R L E A+ E C ++
Sbjct: 441 VGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRAL----EEALLEFAGCAVVI 496
Query: 487 SH 488
SH
Sbjct: 497 SH 498
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 34.7 bits (79), Expect = 0.053
Identities = 18/104 (17%), Positives = 39/104 (37%), Gaps = 7/104 (6%)
Query: 396 YSRVRNLPSVLLNT-IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFL 454
+ ++ + E + L + + SG + +L+ A+A ++ L
Sbjct: 25 ELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLIL 84
Query: 455 DEPTSGMDPGARR------FLWTCIERAVSEGRCVILTSHNMEE 492
DE TS +D L + + VILT+++ ++
Sbjct: 85 DEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKD 128
Score = 31.2 bits (70), Expect = 0.71
Identities = 23/111 (20%), Positives = 40/111 (36%), Gaps = 6/111 (5%)
Query: 237 IVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFV---PASTVILDEPTSGVDPY 293
+ + Q+ L + S + + A++ +ILDE TS +D
Sbjct: 35 YIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAE 94
Query: 294 SRRSIWELLI-KVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQ 343
+ L ++ S TVILTT+ DE DL + ++
Sbjct: 95 QEALLLLLEELRLLLLLKSEKNLTVILTTN--DEKDLGPALLRRRFDRRIV 143
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 35.7 bits (83), Expect = 0.069
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 407 LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
L +NE L + LG D + +LSGG RK + AL+ N ++ LDEPT+ +D
Sbjct: 135 LENRINEVLAQ--LGLDPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLD 188
Score = 35.3 bits (82), Expect = 0.11
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 428 VRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
V+ LSGG + +L A L + L+ LDEPT+ +D
Sbjct: 438 VKALSGGERNRLLLARLFLKPSNLLILDEPTNDLD 472
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 35.1 bits (81), Expect = 0.071
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 420 LGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPG-ARRFLWTCIERAVS 478
L HY LSGG +++++ A A G ++F DEPT +D +
Sbjct: 140 LTHYP----AQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRE 195
Query: 479 EGRCVILTSHNMEECEALCTKLTIMVNGQ 507
G ++L +H+ + A C + + +G+
Sbjct: 196 RGTTLVLVTHD-PQLAARCDRQLRLRSGR 223
Score = 29.7 bits (67), Expect = 3.2
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 25/139 (17%)
Query: 214 MNAANNVILRASLPSNVSRDDYAI-------VAINHPMNLTHKQMALETLKKAGTSILVA 266
+ A NV L L S D A V + + Q++ G VA
Sbjct: 103 LTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLS------GGEQQRVA 156
Query: 267 VTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDE 326
+ FA P + DEPT +D + I +LL +A + G T++L TH D
Sbjct: 157 LARAFAGR--PD-VLFADEPTGNLDRATGDKIADLL----FALNRERGTTLVLVTH--DP 207
Query: 327 ADLLG--DRIAIIAAGKLQ 343
L DR + +G+L
Sbjct: 208 Q-LAARCDRQLRLRSGRLV 225
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase
L inhibitor. The ABC ATPase RNase L inhibitor (RLI) is
a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology.
Length = 177
Score = 34.5 bits (79), Expect = 0.076
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEG-RCVILTSHN 489
LSGG ++++ A ALL N DEP++ +D R I R EG + ++ H+
Sbjct: 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHD 131
Query: 490 M 490
+
Sbjct: 132 L 132
>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 36.0 bits (83), Expect = 0.077
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 426 REVRTLSGGNKRKLSTAIALLGNTP---LIFLDEPTSGMDPGARRFLWTCIERAVSEGRC 482
R + +LSGG ++L A LL + L LDEPT+G+ + L ++ +G
Sbjct: 805 RPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHT 864
Query: 483 VILTSHNM 490
V++ HNM
Sbjct: 865 VVIIEHNM 872
Score = 34.0 bits (78), Expect = 0.25
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 10/71 (14%)
Query: 425 DREVRTLSGGNKRKLSTAIA------LLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVS 478
+R + TLSGG + + TA+A L+G T + LDEP+ G+ P L I++
Sbjct: 471 ERALATLSGGEQER--TALAKHLGAELIGITYI--LDEPSIGLHPQDTHKLINVIKKLRD 526
Query: 479 EGRCVILTSHN 489
+G V+L H+
Sbjct: 527 QGNTVLLVEHD 537
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 35.5 bits (82), Expect = 0.077
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAV-SEGRCV 483
+R V SGG + +L+ A AL+ + L+ LDEPT+ +D A +W +E+ + S +
Sbjct: 144 ERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDA--VIW--LEKWLKSYQGTL 199
Query: 484 ILTSHN 489
IL SH+
Sbjct: 200 ILISHD 205
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or lesions
in the genetic loci have been linked to the aetiology of
asthma, bronchiectasis, chronic obstructive pulmonary
disease etc. Disease-causing mutations have been studied
by 36Cl efflux assays in vitro cell cultures and
electrophysiology, all of which point to the impairment
of chloride channel stability and not the biosynthetic
processing per se [Transport and binding proteins,
Anions].
Length = 1490
Score = 35.7 bits (82), Expect = 0.080
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 6/68 (8%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC-VILTSHN 489
LS G+K+ + A ++L ++ LDEP++ +DP + + ++++ S C VIL+ H
Sbjct: 1354 LSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSN--CTVILSEHR 1411
Query: 490 ME---ECE 494
+E EC+
Sbjct: 1412 VEALLECQ 1419
Score = 31.8 bits (72), Expect = 1.4
Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 31/137 (22%)
Query: 187 LSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNL 246
SG ++ LD + W + + W A V L++ + + D+ +V + ++
Sbjct: 1304 FSGTFRKNLDPYEQWSDEEIW-------KVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSN 1356
Query: 247 THKQ-MALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKV 305
HKQ M L SIL +L +LDEP++ +DP + + I + L
Sbjct: 1357 GHKQLMCL------ARSILSKAKIL-----------LLDEPSAHLDPVTLQIIRKTL--- 1396
Query: 306 YYASHSLSGRTVILTTH 322
S S TVIL+ H
Sbjct: 1397 ---KQSFSNCTVILSEH 1410
Score = 30.3 bits (68), Expect = 3.6
Identities = 36/156 (23%), Positives = 72/156 (46%), Gaps = 16/156 (10%)
Query: 374 IGYCPQFDALNDRLTPREHLEF---YSRVRNLPSVLLNTIVNESLNKFALGHYSDREVR- 429
I + PQ + T ++++ F Y R SV+ + E + F D+ V
Sbjct: 489 ISFSPQTSWIMPG-TIKDNIIFGLSYDEYR-YTSVIKACQLEEDIALFP---EKDKTVLG 543
Query: 430 ----TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGRCVI 484
TLSGG + ++S A A+ + L LD P + +D + ++ +C+ + +S ++
Sbjct: 544 EGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRIL 603
Query: 485 LTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK 520
+TS +E + K+ ++ G G+ + L++K
Sbjct: 604 VTS-KLEHLKK-ADKILLLHEGVCYFYGTFSELQAK 637
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 34.8 bits (80), Expect = 0.095
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 413 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
E L L H ++ LSGG +++++ A AL+ N L+ DEPT +D
Sbjct: 128 EMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLD 177
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 35.0 bits (81), Expect = 0.10
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE--GRCVILTSH 488
LSGG +++++ A AL + L+ LDEP S +D R L T I R + G I+ +H
Sbjct: 135 LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEI-RQLQRRLGVTTIMVTH 193
Query: 489 NMEECEALCTKLTIMVNGQ 507
+ EE ++ ++ +M +G
Sbjct: 194 DQEEALSMADRIVVMNHGV 212
Score = 33.1 bits (76), Expect = 0.37
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 12/70 (17%)
Query: 282 ILDEPTSGVDP----YSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAII 337
+LDEP S +D + R I +L ++ G T I+ TH +EA + DRI ++
Sbjct: 157 LLDEPLSALDARVREHLRTEIRQLQRRL--------GVTTIMVTHDQEEALSMADRIVVM 208
Query: 338 AAGKLQCCGS 347
G ++ G+
Sbjct: 209 NHGVIEQVGT 218
Score = 31.2 bits (71), Expect = 1.8
Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 19/121 (15%)
Query: 79 LGPSGITLGLHTL-----GLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVC 133
LGPSG G TL GLE ++GT DI T + +R G+
Sbjct: 36 LGPSGC--GKTTLLRIIAGLE----------RQ-TAGTIYQGGRDI-TRLPPQKRDYGIV 81
Query: 134 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQR 193
Q ALF LTV +++ + + + + + ++ ++ +G+P LSGG Q+
Sbjct: 82 FQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQ 141
Query: 194 K 194
+
Sbjct: 142 R 142
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (multidrug
resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 34.3 bits (79), Expect = 0.11
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 13/70 (18%)
Query: 403 PSVLLNTIVNESLNKFALGHYSDREVRT----------LSGGNKRKLSTAIALLGNTPLI 452
P++ TI + +L+ F YSD E+ LS G ++ L A ALL ++
Sbjct: 91 PTLFSGTIRS-NLDPF--DEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVL 147
Query: 453 FLDEPTSGMD 462
LDE T+ +D
Sbjct: 148 VLDEATASID 157
Score = 28.9 bits (65), Expect = 5.6
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 105 LPVSSGTAKIYDHDIRT-DMTTIRRSLGVCPQYNALFD 141
L G +I DI T + +R SL + PQ LF
Sbjct: 58 LEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFS 95
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 34.7 bits (80), Expect = 0.11
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
LSGG +++L A A+ ++ +DEP S +DP + + I + VI+T HNM
Sbjct: 149 LSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVT-HNM 207
Query: 491 EE 492
++
Sbjct: 208 QQ 209
Score = 33.5 bits (77), Expect = 0.24
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 11/70 (15%)
Query: 276 VPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGR-TVILTTHYMDEADLLGDRI 334
V +++DEP S +DP S +I +L+ + L T+++ TH M +A + D+
Sbjct: 165 VEPDVLLMDEPCSALDPISTLAIEDLI-------NELKQDYTIVIVTHNMQQAARVSDQT 217
Query: 335 A---IIAAGK 341
A + A GK
Sbjct: 218 AFFNLEATGK 227
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 35.3 bits (82), Expect = 0.11
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDP 463
LSGG +++L A AL+ N ++ LDE TS +DP
Sbjct: 614 ANLSGGQRQRLEIARALVRNPSILILDEATSALDP 648
>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of
CFTR,subfamily C. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 275
Score = 34.4 bits (79), Expect = 0.13
Identities = 21/68 (30%), Positives = 41/68 (60%), Gaps = 6/68 (8%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC-VILTSHN 489
LS G+K+ + A ++L ++ LDEP++ +DP + + +++A ++ C VIL+ H
Sbjct: 139 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFAD--CTVILSEHR 196
Query: 490 ME---ECE 494
+E EC+
Sbjct: 197 IEAMLECQ 204
Score = 32.1 bits (73), Expect = 0.71
Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 30/156 (19%)
Query: 188 SGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLT 247
SG ++ LD W + + W A V L++ + + D+ +V ++
Sbjct: 90 SGTFRKNLDPYGKWSDEEIW-------KVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHG 142
Query: 248 HKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYY 307
HKQ+ + +A +VL A ++LDEP++ +DP + + I + L
Sbjct: 143 HKQL-----------MCLARSVLSK-----AKILLLDEPSAHLDPITYQVIRKTL----- 181
Query: 308 ASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQ 343
+ + TVIL+ H + EA L R +I K++
Sbjct: 182 -KQAFADCTVILSEHRI-EAMLECQRFLVIEENKVR 215
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 34.8 bits (80), Expect = 0.16
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 426 REVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL 485
+ +T SGG + +++ A AL L+ LDEPT+ +D A +L T + + + I+
Sbjct: 340 KATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYL---LKWPKTFIV 396
Query: 486 TSHNMEECEALCTKLTIMVNGQ 507
SH E + T + + ++GQ
Sbjct: 397 VSHAREFLNTVVTDI-LHLHGQ 417
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake [Transport and binding
proteins, Amino acids, peptides and amines, Transport
and binding proteins, Other].
Length = 555
Score = 34.5 bits (79), Expect = 0.16
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWT-CIERAVSEGRCVILTSHN 489
LS G +++L+ A L + P++ DE + DP +RF + + +G+ +I+ SH+
Sbjct: 471 LSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHD 530
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 34.6 bits (80), Expect = 0.17
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 432 SGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIE--RAVSE--GRCVILTS 487
SGG +++++ A AL+ LI LDEPTS +D + ++ R + + G + S
Sbjct: 428 SGGQRQRIAIARALILKPELILLDEPTSALDRSVQA---QVLDLLRDLQQKHGLSYLFIS 484
Query: 488 HNMEECEALCTKLTIMVNGQ 507
H++ ALC ++ +M +G+
Sbjct: 485 HDLAVVRALCHRVIVMRDGK 504
Score = 29.9 bits (68), Expect = 3.8
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
LSGG ++++ A+AL L+ DEPT+ +D
Sbjct: 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALD 189
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 34.7 bits (80), Expect = 0.17
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 488
LSGG K+++S A ALL N ++ LD+ S +D + + R EGR VI+++H
Sbjct: 452 LSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNL-RQWGEGRTVIISAH 508
>gnl|CDD|213206 cd03239, ABC_SMC_head, The SMC head domain belongs to the
ATP-binding cassette superfamily. The structural
maintenance of chromosomes (SMC) proteins are essential
for successful chromosome transmission during
replication and segregation of the genome in all
organisms. SMCs are generally present as single proteins
in bacteria, and as at least six distinct proteins in
eukaryotes. The proteins range in size from
approximately 110 to 170 kDa, and each has five distinct
domains: amino- and carboxy-terminal globular domains,
which contain sequences characteristic of ATPases, two
coiled-coil regions separating the terminal domains ,
and a central flexible hinge. SMC proteins function
together with other proteins in a range of chromosomal
transactions, including chromosome condensation,
sister-chromatid cohesion, recombination, DNA repair,
and epigenetic silencing of gene expression.
Length = 178
Score = 33.4 bits (77), Expect = 0.17
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 264 LVAVTVLFAM-SFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTH 322
L A+ ++FA+ P+ +LDE + +DP +RR + +++ + + I+ T
Sbjct: 102 LSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKE-----MAKHTSQFIVITL 156
Score = 30.4 bits (69), Expect = 1.8
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 431 LSGGNKRKLST-----AIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL 485
LSGG ++ LS A+ + +P LDE + +DP RR + I+ I+
Sbjct: 95 LSGG-EKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIV 153
Query: 486 TSHNMEECEALCTKLTI-MVNGQFT 509
+ E E + + V+G T
Sbjct: 154 ITLKKEMFENADKLIGVLFVHGVST 178
>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 33.8 bits (78), Expect = 0.22
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Query: 409 TIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTP-------LIFLDEPTSGM 461
+ +NE L R V LSGG +++ A +L P L+ LDEP + +
Sbjct: 105 SALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSL 164
Query: 462 DPGARRFLWTCIERAVSEGRCVILTSH 488
D + L + +G V+++SH
Sbjct: 165 DVAQQAALDRLLSELCQQGIAVVMSSH 191
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 33.2 bits (76), Expect = 0.28
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 9/67 (13%)
Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTC-IERAVSEGR---CVIL 485
+LSGG +++L A + +I +DEP S +DP + T IE + E + +++
Sbjct: 154 SLSGGQQQRLCIARTIAIEPEVILMDEPCSALDP-----ISTLKIEETMHELKKNFTIVI 208
Query: 486 TSHNMEE 492
+HNM++
Sbjct: 209 VTHNMQQ 215
Score = 32.8 bits (75), Expect = 0.42
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGR-TVILTTHYMDEADLLGDRIAIIAA 339
+++DEP S +DP S I E + H L T+++ TH M +A + D A A
Sbjct: 176 ILMDEPCSALDPISTLKIEETM-------HELKKNFTIVIVTHNMQQAVRVSDMTAFFNA 228
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 33.7 bits (77), Expect = 0.29
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Query: 430 TLSGGNKRKLSTAIA------LLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC- 482
+LSGG K ++ A+ L + L+ +DEPT+ +D R L IE ++ +
Sbjct: 801 SLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDI 860
Query: 483 --VILTSHNME 491
VI+ SH+ E
Sbjct: 861 PQVIMISHHRE 871
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 33.0 bits (76), Expect = 0.36
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCV 483
R LSGG ++++ A AL N LI DEP S +D + + ++ E G
Sbjct: 104 YRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTY 163
Query: 484 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 519
+ SH++ + ++ +M G+ +G + S
Sbjct: 164 LFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFS 199
Score = 29.9 bits (68), Expect = 4.0
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 14/67 (20%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADL-----LGDRIA 335
++ DEP S +D + I LL L T + +H DL + DRIA
Sbjct: 131 IVADEPVSALDVSVQAQILNLLKD-LQEELGL---TYLFISH-----DLSVVRYISDRIA 181
Query: 336 IIAAGKL 342
++ GK+
Sbjct: 182 VMYLGKI 188
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 33.8 bits (77), Expect = 0.37
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCI--ERAVSEGRCVILTSH 488
LSGG K+++S A A+ N + D+P S +D + ++ + V + + IL +H
Sbjct: 761 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTH 820
Query: 489 NMEECEALCTKLTIMVNGQFTCLGSATHLKSKYG 522
+ + + +M G+ + +GS L + G
Sbjct: 821 GISYLPQV-DVIIVMSGGKISEMGSYQELLQRDG 853
Score = 31.1 bits (70), Expect = 2.0
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 10/73 (13%)
Query: 278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTH---YMDEADLLGDRI 334
A + D+P S VD + + I+E V L +T IL TH Y+ + D+ I
Sbjct: 779 ADIYLFDDPLSAVDAHVGKHIFE---HVIGPEGVLKNKTRILVTHGISYLPQVDV----I 831
Query: 335 AIIAAGKLQCCGS 347
+++ GK+ GS
Sbjct: 832 IVMSGGKISEMGS 844
>gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 226
Score = 32.6 bits (75), Expect = 0.39
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 413 ESLNKFALGHYS-DREVRTLSGGNKRKLSTAIAL-LGNTPLIF-LDEPTSGMDPGARRFL 469
L LG+ + R TLSGG +++ A + G T +++ LDEP+ G+ P L
Sbjct: 119 GFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRL 178
Query: 470 WTCIERAVSEGRCVILTSHNME 491
++R G V++ H+ +
Sbjct: 179 IETLKRLRDLGNTVLVVEHDED 200
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 33.1 bits (76), Expect = 0.41
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGAR 466
VN+ L H DR+ + LSGG +++++ L+ + LDEP S +D R
Sbjct: 114 VNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALR 169
Score = 31.2 bits (71), Expect = 1.7
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGK 341
+LDEP S +D R + + ++ H GRT+I TH EA L D+I ++ AG+
Sbjct: 156 LLDEPLSNLDAALRVQMRIEISRL----HKRLGRTMIYVTHDQVEAMTLADKIVVLDAGR 211
Query: 342 LQCCGSSVFL----KNSFARGYYLSLDMKSAPQK 371
+ G + L N F G+ S M P K
Sbjct: 212 VAQVGKPLELYHYPANRFVAGFIGSPKMNFLPVK 245
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 32.8 bits (75), Expect = 0.51
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 432 SGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNM 490
SGG ++++ A+ALL L+ DEPT+ +D + + T + E +I+ +H++
Sbjct: 163 SGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDL 222
Query: 491 EECEALCTKLTIMVNGQFTCLGSATHL 517
+C K+ +M G+ G+A +
Sbjct: 223 GVVAGICDKVLVMYAGRTMEYGNARDV 249
>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 32.2 bits (74), Expect = 0.86
Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 14/111 (12%)
Query: 387 LTPREHLEFYSRVRNLPSVL--LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIA 444
+T E LEF+ +P + L T+V+ L LG + TLSGG +++ A
Sbjct: 784 MTVEEALEFFE---AIPKIARKLQTLVDVGLGYIKLG----QPATTLSGGEAQRVKLAKE 836
Query: 445 LL----GNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 491
L G T L LDEPT+G+ + L + R V +G VI+ HN++
Sbjct: 837 LSKRSTGKT-LYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLD 886
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 32.2 bits (74), Expect = 0.87
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
TLSGG +++L A AL+ ++ DE TS +D
Sbjct: 588 TLSGGQRQRLLIARALVRKPRILLFDEATSALD 620
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 31.7 bits (72), Expect = 0.87
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 413 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
L + LG D LSGG +++++ A A G ++F DEPT +D
Sbjct: 129 ALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178
>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 31.5 bits (72), Expect = 0.89
Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 22/102 (21%)
Query: 393 LEFYSRVR------NLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL 446
LEF + + L+ VNE SGG K++ L
Sbjct: 124 LEFLEIINEKLKLVGMDPSFLSRNVNEGF----------------SGGEKKRNEILQMAL 167
Query: 447 GNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 488
++ L LDE SG+D A + + I + ++ +IL +H
Sbjct: 168 LDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITH 209
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 32.3 bits (73), Expect = 0.95
Identities = 16/61 (26%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPG-ARRFLWTCIERAVSEGRCVILTSHN 489
+SGG K+++S A A+ N+ + D+P S +D A + +C++ + +G+ +L ++
Sbjct: 741 ISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL-KGKTRVLVTNQ 799
Query: 490 M 490
+
Sbjct: 800 L 800
Score = 30.3 bits (68), Expect = 4.1
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 9/117 (7%)
Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE--GRCVILTS 487
S G ++ LS A ALL + ++ LDE T+ +D + I+R + E C +L
Sbjct: 1371 NFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTD----SLIQRTIREEFKSCTMLVI 1426
Query: 488 HNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCAEGRSADAQTYLS 544
+ C K+ ++ +GQ S L S+ + V A+AQ YLS
Sbjct: 1427 AHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTG--PANAQ-YLS 1480
>gnl|CDD|153056 cd00033, CCP, Complement control protein (CCP) modules (aka short
consensus repeats SCRs or SUSHI repeats) have been
identified in several proteins of the complement system.
SUSHI repeats (short complement-like repeat, SCR) are
abundant in complement control proteins. The complement
control protein (CCP) modules (also known as short
consensus repeats SCRs or SUSHI repeats) contain
approximately 60 amino acid residues and have been
identified in several proteins of the complement system.
Typically, 2 to 4 modules contribute to a binding site,
implying that the orientation of the modules to each
other is critical for function.
Length = 57
Score = 28.6 bits (64), Expect = 1.1
Identities = 11/38 (28%), Positives = 13/38 (34%), Gaps = 6/38 (15%)
Query: 497 CTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCAEG 534
C + NG T K Y G +V C EG
Sbjct: 1 CPPPPVPENGTVTG------SKGSYSYGSTVTYSCNEG 32
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 32.0 bits (73), Expect = 1.2
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPG-ARRFLWTCIERAVSEGRCVILT 486
+SGG K+++S A A+ N+ + D+P S +D R+ CI+ + V++T
Sbjct: 741 ISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVT 797
>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 31.6 bits (73), Expect = 1.5
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
D +V LSGG +R+++ LL ++ LDEPT+ +D
Sbjct: 158 DAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLD 195
Score = 28.9 bits (66), Expect = 8.7
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 11/65 (16%)
Query: 428 VRTLSGGNKRKLSTAIALL--GNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE--GRCV 483
V LSGG + +L A L GN ++ LDEPT+ +D R L E A+ E G C
Sbjct: 443 VGVLSGGERNRLHLAKTLKQGGN--VLLLDEPTNDLDVETLRAL----EEALLEFPG-CA 495
Query: 484 ILTSH 488
++ SH
Sbjct: 496 VVISH 500
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 30.8 bits (70), Expect = 1.6
Identities = 47/168 (27%), Positives = 74/168 (44%), Gaps = 31/168 (18%)
Query: 345 CGSSVFLKN-----SFARGYYL--SLDMKSAPQKSY---IGYCPQFDAL-NDRLTPREHL 393
CG S LK S G L D+ + + Y + YC Q L D T ++L
Sbjct: 44 CGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGD--TVYDNL 101
Query: 394 EFYSRVRNL---PSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNT 449
F ++RN P++ L + L +FAL + + LSGG K++ I+L+ N
Sbjct: 102 IFPWQIRNQQPDPAIFL-----DDLERFALPDTILTKNIAELSGGEKQR----ISLIRNL 152
Query: 450 P----LIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEE 492
++ LDE TS +D + + I R V E V+ +H+ +E
Sbjct: 153 QFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE 200
>gnl|CDD|240684 cd12238, RRM1_RBM40_like, RNA recognition motif 1 in RNA-binding
protein 40 (RBM40) and similar proteins. This subfamily
corresponds to the RRM1 of RBM40, also known as
RNA-binding region-containing protein 3 (RNPC3) or
U11/U12 small nuclear ribonucleoprotein 65 kDa protein
(U11/U12-65K protein), It serves as a bridging factor
between the U11 and U12 snRNPs. It contains two repeats
of RNA recognition motif (RRM), also known as RBD (RNA
binding domain) or RNP (ribonucleoprotein domain),
connected by a linker that includes a proline-rich
region. It binds to the U11-associated 59K protein via
its RRM1 and employs the RRM2 to bind hairpin III of the
U12 small nuclear RNA (snRNA). The proline-rich region
might be involved in protein-protein interactions. .
Length = 73
Score = 28.4 bits (64), Expect = 2.0
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 398 RVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIA 444
VR+LP L + L F VR +S K K +TA A
Sbjct: 3 LVRHLPPELSEDDKEDLLKHFGA-----SSVRVMSRRGKLK-NTAFA 43
>gnl|CDD|223990 COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III
[Energy production and conversion].
Length = 366
Score = 30.7 bits (70), Expect = 2.5
Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 14/65 (21%)
Query: 234 DYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPY 293
DYA + + + + ALE + GTS+++ V A I T
Sbjct: 256 DYAFECVGNVEVM---RQALEATHRGGTSVIIGVA--------GAGQEI---STRPFQLV 301
Query: 294 SRRSI 298
+ R
Sbjct: 302 TGRVW 306
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 30.6 bits (69), Expect = 2.7
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 432 SGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGAR-RFLWTCIERAVSEGRCVILTSHNM 490
SGG ++++ A AL N +I DE S +D R + + ++ G + SH+M
Sbjct: 465 SGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDM 524
Query: 491 EECEALCTKLTIMVNGQFTCLG 512
E + ++ +M GQ +G
Sbjct: 525 AVVERISHRVAVMYLGQIVEIG 546
Score = 29.8 bits (67), Expect = 4.8
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCI---ERAVSEGRCVILTS 487
LSGG ++++ A+AL ++ DEPT+ +D + + I ++ +S G VI +
Sbjct: 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMG--VIFIT 226
Query: 488 HNMEECEALCTKLTIMVNGQFTCLGS 513
H+M + ++ +M G+ GS
Sbjct: 227 HDMGVVAEIADRVLVMYQGEAVETGS 252
>gnl|CDD|213243 cd03276, ABC_SMC6_euk, ATP-binding cassette domain of eukaryotic
SM6 proteins. The structural maintenance of chromosomes
(SMC) proteins are large (approximately 110 to 170 kDa),
and each is arranged into five recognizable domains.
Amino-acid sequence homology of SMC proteins between
species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code),
which by mutational studies has been shown to be
essential in several proteins. The carboxy-terminal
domain contains a sequence (the DA-box) that resembles a
'Walker B' motif, and a motif with homology to the
signature sequence of the ATP-binding cassette (ABC)
family of ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 198
Score = 29.9 bits (68), Expect = 2.7
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 426 REVRTLSGGNKRKLSTAIALLG-----NTPLIFLDEPTSGMDPGARRF 468
R+V+TLSGG +R ST LL +P LDE MD R+
Sbjct: 105 RDVKTLSGG-ERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKI 151
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 29.8 bits (67), Expect = 3.0
Identities = 15/60 (25%), Positives = 30/60 (50%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
LSGG ++++ A A++ ++ DEPT +D + E G V++ +H++
Sbjct: 138 LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDI 197
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 30.5 bits (69), Expect = 3.4
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
LSGG K ++S A A+ N + LD+P S +D
Sbjct: 783 LSGGQKARVSLARAVYANRDVYLLDDPLSALD 814
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 29.7 bits (67), Expect = 3.9
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGAR-RFLWTCIERAVSEGRCVILTSHN 489
LSGG +++ A+A+ L+ DEPT+ +D + + + +E E ++L +H+
Sbjct: 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHD 213
Query: 490 MEECEALCTKLTIMVNGQFTCLGSATHL 517
+ K+ +M GQ G A +
Sbjct: 214 LALVAEAAHKIIVMYAGQVVETGKAHDI 241
>gnl|CDD|226984 COG4637, COG4637, Predicted ATPase [General function prediction
only].
Length = 373
Score = 29.8 bits (67), Expect = 3.9
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 10/82 (12%)
Query: 428 VRTLSGGNKRKLSTAIALLG--NTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL 485
R LS G R L+ A LL PL+ LDEP + + P L + A + VI+
Sbjct: 268 DRELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRSQ-VIV 326
Query: 486 TSHNM-------EECEALCTKL 500
++H+ E +
Sbjct: 327 STHSPRLLNAVEEHSVFWLDRE 348
>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 29.9 bits (68), Expect = 4.0
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWT 471
LS G K++L+ +AL ++ LDE + DP RR +
Sbjct: 450 LSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQ 490
>gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular
activities (AAA). AAA family proteins often perform
chaperone-like functions that assist in the assembly,
operation, or disassembly of protein complexes.
Length = 131
Score = 28.7 bits (65), Expect = 4.2
Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 10/78 (12%)
Query: 270 LFAMSFVPASTVI-LDE-------PTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTT 321
LF + A VI +DE SG D SRR + +LL ++ + SLS VI T
Sbjct: 49 LFEAAKKLAPCVIFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSSLSKVIVIAAT 108
Query: 322 HYMDEAD--LLGDRIAII 337
+ D+ D LL R I
Sbjct: 109 NRPDKLDPALLRGRFDRI 126
>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 29.5 bits (67), Expect = 5.1
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 422 HYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
HY DR SGG +++++ A AL+ + ++ DEP S +D
Sbjct: 147 HY-DRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALD 186
>gnl|CDD|200477 cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in
cyclomaltodextrinases and related proteins.
Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase
(NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC
3.2.1.133) catalyze the hydrolysis of alpha-(1,4)
glycosidic linkages on a number of substrates including
cyclomaltodextrins (CDs), pullulan, and starch. These
enzymes hydrolyze CDs and starch to maltose and pullulan
to panose by cleavage of alpha-1,4 glycosidic bonds
whereas alpha-amylases essentially lack activity on CDs
and pullulan. They also catalyze transglycosylation of
oligosaccharides to the C3-, C4- or C6-hydroxyl groups
of various acceptor sugar molecules. Since these
proteins are nearly indistinguishable from each other,
they are referred to as cyclomaltodextrinases (CMDs).
The Alpha-amylase family comprises the largest family of
glycoside hydrolases (GH), with the majority of enzymes
acting on starch, glycogen, and related oligo- and
polysaccharides. These proteins catalyze the
transformation of alpha-1,4 and alpha-1,6 glucosidic
linkages with retention of the anomeric center. The
protein is described as having 3 domains: A, B, C. A is
a (beta/alpha) 8-barrel; B is a loop between the beta 3
strand and alpha 3 helix of A; C is the C-terminal
extension characterized by a Greek key. The majority of
the enzymes have an active site cleft found between
domains A and B where a triad of catalytic residues
(Asp, Glu and Asp) performs catalysis. Other members of
this family have lost the catalytic activity as in the
case of the human 4F2hc, or only have 2 residues that
serve as the catalytic nucleophile and the acid/base,
such as Thermus A4 beta-galactosidase with 2 Glu
residues (GH42) and human alpha-galactosidase with 2 Asp
residues (GH31). The family members are quite extensive
and include: alpha amylase, maltosyltransferase,
cyclodextrin glycotransferase, maltogenic amylase,
neopullulanase, isoamylase, 1,4-alpha-D-glucan
maltotetrahydrolase, 4-alpha-glucotransferase,
oligo-1,6-glucosidase, amylosucrase, sucrose
phosphorylase, and amylomaltase.
Length = 389
Score = 29.4 bits (67), Expect = 5.4
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 9/51 (17%)
Query: 428 VRTLSGGNKRKLSTAIALL----GNTPLIFL-DEP--TSGMDPGARR-FLW 470
+ TL GG+K +L A+AL G P I+ DE G DP RR W
Sbjct: 309 ILTLLGGDKARLKLALALQFTLPG-APCIYYGDEIGLEGGKDPDNRRPMPW 358
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The CFTR
subfamily domain 1. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits, or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 282
Score = 29.1 bits (65), Expect = 5.8
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 13/97 (13%)
Query: 374 IGYCPQFDALNDRLTPREHLEF---YSRVRNLPSVLLNTIVNESLNKFALGHYSDREVR- 429
I + QF + T +E++ F Y R SV+ + E + KF D V
Sbjct: 100 ISFSSQFSWIMPG-TIKENIIFGVSYDEYRYK-SVVKACQLEEDITKFP---EKDNTVLG 154
Query: 430 ----TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
TLSGG + ++S A A+ + L LD P +D
Sbjct: 155 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 191
>gnl|CDD|236292 PRK08566, PRK08566, DNA-directed RNA polymerase subunit A';
Validated.
Length = 882
Score = 29.1 bits (66), Expect = 8.6
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 125 TIRRSLGVCPQYNALFD 141
T R +L VCP YNA FD
Sbjct: 443 TFRLNLAVCPPYNADFD 459
>gnl|CDD|233843 TIGR02390, RNA_pol_rpoA1, DNA-directed RNA polymerase subunit A'.
This family consists of the archaeal A' subunit of the
DNA-directed RNA polymerase. The example from
Methanocaldococcus jannaschii contains an intein.
Length = 867
Score = 28.9 bits (65), Expect = 8.8
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 125 TIRRSLGVCPQYNALFD 141
T R +L VCP YNA FD
Sbjct: 439 TFRLNLAVCPPYNADFD 455
>gnl|CDD|213210 cd03243, ABC_MutS_homologs, ATP-binding cassette domain of MutS
homologs. The MutS protein initiates DNA mismatch
repair by recognizing mispaired and unpaired bases
embedded in duplex DNA and activating endo- and
exonucleases to remove the mismatch. Members of the MutS
family also possess a conserved ATPase activity that
belongs to the ATP binding cassette (ABC) superfamily.
MutS homologs (MSH) have been identified in most
prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2), whereas
seven MSH proteins (MSH1 to MSH7) have been identified
in eukaryotes. The homodimer MutS1 and heterodimers
MSH2-MSH3 and MSH2-MSH6 are primarily involved in
mitotic mismatch repair, whereas MSH4-MSH5 is involved
in resolution of Holliday junctions during meiosis. All
members of the MutS family contain the highly conserved
Walker A/B ATPase domain, and many share a common
mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and
MSH4-MSH5 dimerize to form sliding clamps, and
recognition of specific DNA structures or lesions
results in ADP/ATP exchange.
Length = 202
Score = 28.4 bits (64), Expect = 9.2
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 8/49 (16%)
Query: 277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGR--TVILTTHY 323
P S V++DE G +I Y L + + TH+
Sbjct: 108 PRSLVLIDELGRGTSTAEGLAI------AYAVLEHLLEKGCRTLFATHF 150
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.133 0.386
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 29,980,769
Number of extensions: 2923101
Number of successful extensions: 3568
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3232
Number of HSP's successfully gapped: 738
Length of query: 601
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 499
Effective length of database: 6,413,494
Effective search space: 3200333506
Effective search space used: 3200333506
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.1 bits)