RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7365
(601 letters)
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 165 bits (419), Expect = 4e-47
Identities = 48/154 (31%), Positives = 72/154 (46%)
Query: 371 KSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRT 430
+ I Y P+ + E+L F + S + +V + LG V T
Sbjct: 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVST 146
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
S G RKL A AL+ N L LDEPTSG+D R + +++A EG ++++SHNM
Sbjct: 147 YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM 206
Query: 491 EECEALCTKLTIMVNGQFTCLGSATHLKSKYGQG 524
E E LC ++ ++ NG G+ LK +Y
Sbjct: 207 LEVEFLCDRIALIHNGTIVETGTVEELKERYKAQ 240
Score = 94.5 bits (236), Expect = 6e-22
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
ILDEPTSG+D + R + ++L + S G T+++++H M E + L DRIA+I G
Sbjct: 168 AILDEPTSGLDVLNAREVRKILKQA-----SQEGLTILVSSHNMLEVEFLCDRIALIHNG 222
Query: 341 KLQCCGSSVFLKNSF 355
+ G+ LK +
Sbjct: 223 TIVETGTVEELKERY 237
Score = 93.4 bits (233), Expect = 2e-21
Identities = 16/98 (16%), Positives = 38/98 (38%)
Query: 99 SMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV 158
++ ++ SSG ++ ++ + +R+ + P+ + + E++ F +
Sbjct: 59 RIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYAS 118
Query: 159 PKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLD 196
+ + G+ K +T S GM RKL
Sbjct: 119 SSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLL 156
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 124 bits (313), Expect = 1e-32
Identities = 22/138 (15%), Positives = 54/138 (39%), Gaps = 8/138 (5%)
Query: 371 KSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRT 430
K I + P+ + +++ ++L+ + + + + ++L + + +
Sbjct: 77 KGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKV--NKNEIMDALESVEVLDLKKK-LGE 133
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL-TSHN 489
LS G R++ A LL N + LD+P +D ++ + I + E VI+ +
Sbjct: 134 LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE 193
Query: 490 MEECEALCTKLTIMVNGQ 507
+ C+ +
Sbjct: 194 LSYCD----VNENLHKYS 207
Score = 77.6 bits (192), Expect = 2e-16
Identities = 16/97 (16%), Positives = 37/97 (38%), Gaps = 7/97 (7%)
Query: 99 SMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV 158
+ L G I ++ + P+ + K++VE+++ + L V
Sbjct: 53 KTISTYLKPLKGEIIYNGVPITK----VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV 108
Query: 159 PKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKL 195
+ + EI + + + + + L LS G R++
Sbjct: 109 KVN--KNEIMDALESVEVLDLKKKL-GELSQGTIRRV 142
Score = 72.5 bits (179), Expect = 9e-15
Identities = 8/62 (12%), Positives = 22/62 (35%), Gaps = 8/62 (12%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
+LD+P +D S+ + + ++++ G +I + + D +
Sbjct: 155 YVLDDPVVAIDEDSKHKVLKSILEI----LKEKGIVIISSREELSYC----DVNENLHKY 206
Query: 341 KL 342
Sbjct: 207 ST 208
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 93.4 bits (233), Expect = 2e-21
Identities = 33/183 (18%), Positives = 74/183 (40%), Gaps = 24/183 (13%)
Query: 371 KSYIGYCPQ--FDALNDRLTPRE--------HLEFYSRVRNLPSVLLNTIVNESLNKFAL 420
+ +IG+ + + + + Y + ++ L +
Sbjct: 96 RQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQD----IDDEIRNEAHQLLKLVGM 151
Query: 421 GHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEG 480
+ + + LS G K+++ A AL+G ++ LDEP +G+D AR L + ++
Sbjct: 152 SAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSY 211
Query: 481 R--CVILTSHNMEECEALCTKLTIMVNGQFTCLGS------ATHLKSKYGQGYSVKVRCA 532
+I +H +EE A +K+ ++ +GQ G+ + ++ + + +V V+
Sbjct: 212 PTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTSENMSRFFQK--NVAVQRW 269
Query: 533 EGR 535
R
Sbjct: 270 NNR 272
Score = 67.2 bits (165), Expect = 2e-12
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGK 341
ILDEP +G+D +R S+ +L + S S +I TH+++E +I ++ G+
Sbjct: 184 ILDEPAAGLDFIARESLLSILDSL---SDSYPTLAMIYVTHFIEEITANFSKILLLKDGQ 240
Query: 342 LQCCGS 347
G+
Sbjct: 241 SIQQGA 246
Score = 54.5 bits (132), Expect = 3e-08
Identities = 17/106 (16%), Positives = 38/106 (35%), Gaps = 9/106 (8%)
Query: 99 SMLMGMLPVSSGTAKIYDHDI---RTDMTTIRRSLGVCPQ--YNALFDKLTVEE--HMWF 151
++L P +SGT ++ T+R+ +G + V +
Sbjct: 65 NILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGA 124
Query: 152 YSQLK--QVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKL 195
+ + Q D + E ++ +G+ K LS G ++++
Sbjct: 125 FKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRV 170
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 75.3 bits (186), Expect = 3e-15
Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Query: 411 VNESLNKFALG--HYSDREVRTLSGGNKRKLSTAIA--LLGNTPLIFLDEPTSGMDPGAR 466
V +++ L + DR LSGG KR++ AIA ++ ++ LDEP G+D +
Sbjct: 117 VKKAMEFVGLDFDSFKDRVPFFLSGGEKRRV--AIASVIVHEPDILILDEPLVGLDREGK 174
Query: 467 RFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 513
L +E+ + G+ VIL SH++E ++ ++ G+ G+
Sbjct: 175 TDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGT 221
Score = 69.9 bits (172), Expect = 2e-13
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGK 341
ILDEP G+D + + ++ K + G+TVIL +H ++ DR+ ++ GK
Sbjct: 161 ILDEPLVGLDREGKTDLLRIVEKW----KT-LGKTVILISHDIETVINHVDRVVVLEKGK 215
Query: 342 LQCCGS 347
G+
Sbjct: 216 KVFDGT 221
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 74.9 bits (185), Expect = 4e-15
Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW 470
V+ +L + + H D+ LS G K++++ A L+ ++ LDEPT+G+DP +
Sbjct: 124 VDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIM 183
Query: 471 TCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 513
+ E G +I+ +H+++ C + +M G+ G+
Sbjct: 184 KLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGN 227
Score = 72.6 bits (179), Expect = 3e-14
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 11/102 (10%)
Query: 265 VAV-TVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHY 323
VA+ VL M P +ILDEPT+G+DP I +LL+++ G T+I+ TH
Sbjct: 152 VAIAGVL-VME--P-KVLILDEPTAGLDPMGVSEIMKLLVEM----QKELGITIIIATHD 203
Query: 324 MDEADLLGDRIAIIAAGKLQCCGS--SVFLKNSFARGYYLSL 363
+D L D + ++ G++ G+ VF + R L L
Sbjct: 204 IDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRL 245
Score = 30.6 bits (70), Expect = 1.3
Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 21/124 (16%)
Query: 79 LGPSGI---TLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD---MTTIRRSLGV 132
LG +G+ TL + G+L SSG + I + +R S+G+
Sbjct: 40 LGGNGVGKSTLFQN-----------FNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGI 88
Query: 133 CPQY--NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGG 190
Q N LF +V + + F + ++P+D + + N + GI H + + LS G
Sbjct: 89 VFQDPDNQLFSA-SVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFG 147
Query: 191 -MQR 193
+R
Sbjct: 148 QKKR 151
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 75.1 bits (185), Expect = 2e-14
Identities = 31/131 (23%), Positives = 53/131 (40%), Gaps = 4/131 (3%)
Query: 374 IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSG 433
+ Y PQ N T +++LE S+ S + E + L + V LSG
Sbjct: 332 LSYKPQRIFPNYDGTVQQYLENASKDALSTS---SWFFEEVTKRLNLHRLLESNVNDLSG 388
Query: 434 GNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEE 492
G +KL A L L LD+P+S +D R + I+R E + H++
Sbjct: 389 GELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSI 448
Query: 493 CEALCTKLTIM 503
+ + ++ +
Sbjct: 449 HDYIADRIIVF 459
Score = 55.8 bits (135), Expect = 2e-08
Identities = 26/120 (21%), Positives = 55/120 (45%), Gaps = 6/120 (5%)
Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW 470
+E + + +++ LSGG ++L A +LL + D+P+S +D R +
Sbjct: 119 KDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMA 178
Query: 471 TCIERAVSEGRCVILTSHNMEECEALCTKLTIM-----VNGQFTCLGSATHLKSKYGQGY 525
I R + + + VI+ H++ + L + I+ V G+ + +A + + +GY
Sbjct: 179 KAI-RELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAARVGINNFLKGY 237
Score = 45.0 bits (107), Expect = 6e-05
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAII 337
I D+P+S +D R ++ + + ++ L + VI+ H + D L D I II
Sbjct: 161 IFDQPSSYLDVRERMNMAKAIREL------LKNKYVIVVDHDLIVLDYLTDLIHII 210
Score = 43.1 bits (102), Expect = 2e-04
Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAI 336
A +LD+P+S +D R + + + + + H + D + DRI +
Sbjct: 403 EADLYVLDQPSSYLDVEERYIVAKAIKR--VTRE--RKAVTFIIDHDLSIHDYIADRIIV 458
Query: 337 I 337
Sbjct: 459 F 459
Score = 32.3 bits (74), Expect = 0.45
Identities = 32/205 (15%), Positives = 61/205 (29%), Gaps = 39/205 (19%)
Query: 3 VVEYG------TVRYDVTQLIRSFLPAANIHKISGSEVTYVLPQDPASMGAYVSLFESLS 56
YG R + ++ +LPA N+ + + + +
Sbjct: 214 SSVYGRVSKSYAARVGINNFLKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWT 273
Query: 57 ENRDKLGIDSYGISDTSLEEQP----LGPSGI---TLGLHTLGLEFVSRSMLMGMLPVSS 109
+ KLG + + +E LGP+GI T +L+G +
Sbjct: 274 KIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFAR-----------ILVGEITADE 322
Query: 110 GTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISN 169
G+ + + + PQ +F + + K +
Sbjct: 323 GS-------VTPEKQILSYK----PQR--IFPNYDGTVQQYLENASKD-ALSTSSWFFEE 368
Query: 170 MIGDLGIPHKRTSLANTLSGG-MQR 193
+ L + S N LSGG +Q+
Sbjct: 369 VTKRLNLHRLLESNVNDLSGGELQK 393
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 75.4 bits (186), Expect = 2e-14
Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 5/131 (3%)
Query: 374 IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSG 433
+ Y PQ+ T E + N E L + DR V LSG
Sbjct: 419 VAYKPQYIKAEYEGTVYEL--LSKIDS--SKLNSNFYKTELLKPLGIIDLYDRNVEDLSG 474
Query: 434 GNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIER-AVSEGRCVILTSHNMEE 492
G ++++ A LL + + LDEP++ +D R + I + ++ H++
Sbjct: 475 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLM 534
Query: 493 CEALCTKLTIM 503
+ + +L +
Sbjct: 535 IDYVSDRLIVF 545
Score = 54.6 bits (132), Expect = 5e-08
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 6/111 (5%)
Query: 378 PQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKR 437
PQ+ L + + E +V + E + + L + DRE+ LSGG +
Sbjct: 182 PQYVDLLPKAVKGKVRELLKKVDEV------GKFEEVVKELELENVLDRELHQLSGGELQ 235
Query: 438 KLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 488
+++ A ALL F DEP+S +D R + I R +EG+ V++ H
Sbjct: 236 RVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEH 286
Score = 35.4 bits (82), Expect = 0.051
Identities = 27/119 (22%), Positives = 40/119 (33%), Gaps = 31/119 (26%)
Query: 79 LGPSGI---TLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQ 135
+GP+GI T ML G+ + G + D+T + PQ
Sbjct: 388 VGPNGIGKTTFVK-----------MLAGVEEPTEGK-------VEWDLTVAYK-----PQ 424
Query: 136 YNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGG-MQR 193
Y + TV E K + + ++ LGI LSGG +QR
Sbjct: 425 YIKAEYEGTVYE--LLSKIDS--SKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQR 479
Score = 35.0 bits (81), Expect = 0.074
Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTH--YMDEADLLGDRI 334
A +LDEP++ +D R ++ + + +T ++ H M D + DR+
Sbjct: 489 DADIYLLDEPSAYLDVEQRLAVSRAIRH--LMEK--NEKTALVVEHDVLM--IDYVSDRL 542
Query: 335 AII 337
+
Sbjct: 543 IVF 545
Score = 33.8 bits (78), Expect = 0.16
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 15/61 (24%)
Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSL--SGRTVILTTH---YMDEADLLGDRIAI 336
DEP+S +D R + ++ L G+ V++ H +D L D I +
Sbjct: 251 FFDEPSSYLDIRQRLKVARVI-------RRLANEGKAVLVVEHDLAVLDY---LSDVIHV 300
Query: 337 I 337
+
Sbjct: 301 V 301
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 74.7 bits (184), Expect = 3e-14
Identities = 27/135 (20%), Positives = 53/135 (39%), Gaps = 5/135 (3%)
Query: 374 IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSG 433
+ PQ A T R+ F+ ++R L + + + D+EV+ LSG
Sbjct: 415 VSMKPQKIAPKFPGTVRQL--FFKKIRG--QFLNPQFQTDVVKPLRIDDIIDQEVQHLSG 470
Query: 434 GNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEE 492
G ++++ +AL + +DEP++ +D R I R + + + H+
Sbjct: 471 GELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIM 530
Query: 493 CEALCTKLTIMVNGQ 507
L K+ +
Sbjct: 531 ATYLADKVIVFEGIP 545
Score = 64.3 bits (157), Expect = 6e-11
Identities = 29/174 (16%), Positives = 60/174 (34%), Gaps = 13/174 (7%)
Query: 357 RGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLN 416
L D+K+ + Y+ + ++ E V +
Sbjct: 156 FTKMLEDDIKAIIKPQYV----DNIPRAIKGPVQKVGELLKLRMEK----SPEDVKRYIK 207
Query: 417 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERA 476
L + R++ LSGG ++ + ++ + + DEP+S +D R I
Sbjct: 208 ILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSL 267
Query: 477 VSEGRCVILTSHNMEECEALCTKLTIM-----VNGQFTCLGSATHLKSKYGQGY 525
++ + VI H++ + L + I+ V G T S + + G+
Sbjct: 268 LAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVYGVVTLPASVREGINIFLDGH 321
Score = 43.5 bits (103), Expect = 2e-04
Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAI 336
PA ++DEP++ +D R +++ + + H + +T + H A L D++ +
Sbjct: 485 PADIYLIDEPSAYLDSEQRIICSKVIRR--FILH--NKKTAFIVEHDFIMATYLADKVIV 540
Query: 337 IAAGK 341
Sbjct: 541 FEGIP 545
Score = 41.9 bits (99), Expect = 6e-04
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 10/72 (13%)
Query: 269 VLFAMSFVP-ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSL--SGRTVILTTHYMD 325
MS V A + DEP+S +D R + +++ SL + VI H +
Sbjct: 230 FAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQII-------RSLLAPTKYVICVEHDLS 282
Query: 326 EADLLGDRIAII 337
D L D + II
Sbjct: 283 VLDYLSDFVCII 294
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 69.5 bits (171), Expect = 2e-13
Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 14/150 (9%)
Query: 374 IGYCPQFDALNDRLTPRE--------HLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSD 425
IG+ PQF + + + H+ +++ P + ++L+ L H +
Sbjct: 68 IGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAK----PKSHDYQVAMQALDYLNLTHLAK 123
Query: 426 REVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIER-AVSEGRCVI 484
RE +LSGG ++ + A A+ LI LDEPTS +D + + + + A S+ V+
Sbjct: 124 REFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVV 183
Query: 485 LTSHNMEECEALCTKLTIMVNGQFTCLGSA 514
T+H + A+ K +++N Q G
Sbjct: 184 FTTHQPNQVVAIANKT-LLLNKQNFKFGET 212
Score = 49.5 bits (119), Expect = 1e-06
Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 10/79 (12%)
Query: 269 VLFAMSFV-PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEA 327
+L A + ++LDEPTS +D ++ + LLI + + TV+ TTH ++
Sbjct: 137 ILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQ----NMTVVFTTHQPNQV 192
Query: 328 DLLGDRIA-----IIAAGK 341
+ ++ G+
Sbjct: 193 VAIANKTLLLNKQNFKFGE 211
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 68.5 bits (168), Expect = 5e-13
Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 10/139 (7%)
Query: 369 PQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALG-HYSDRE 427
Y P+ + +T + + Y ++ L + E L LG R+
Sbjct: 72 NYIRYSTNLPEAYEIG--VTVNDIVYLYEELKGLD----RDLFLEMLKALKLGEEILRRK 125
Query: 428 VRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTS 487
+ LS G + T++AL ++ LDEP +D R + I+ G+ IL +
Sbjct: 126 LYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKE---YGKEGILVT 182
Query: 488 HNMEECEALCTKLTIMVNG 506
H ++ + G
Sbjct: 183 HELDMLNLYKEYKAYFLVG 201
Score = 63.5 bits (155), Expect = 2e-11
Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 10/82 (12%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
V LDEP VD R I + + G+ IL TH +D +L + A G
Sbjct: 150 VGLDEPFENVDAARRHVISRYIKEY--------GKEGILVTHELDMLNLYKEYKAYFLVG 201
Query: 341 -KLQCCGS-SVFLKNSFARGYY 360
+LQ S S L++S G
Sbjct: 202 NRLQGPISVSELLESSIVEGER 223
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 67.2 bits (163), Expect = 1e-11
Identities = 79/538 (14%), Positives = 162/538 (30%), Gaps = 167/538 (31%)
Query: 11 YDVTQLIRSFLPAANIHKISGSEVTYVLPQDPASMGAYVSLFESLSENR---------DK 61
DV + +S L S E+ +++ A G LF +L + +
Sbjct: 36 KDVQDMPKSIL--------SKEEIDHIIMSKDAVSGTLR-LFWTLLSKQEEMVQKFVEEV 86
Query: 62 LGIDSYGISDTSLEEQPLGPSGITLG-------LHTLGLEF----VSR--------SMLM 102
L I+ Y + ++ + PS +T L+ F VSR L+
Sbjct: 87 LRIN-YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145
Query: 103 -----------GMLPVSSGTAK-------IYDHDIRTDMTT----IRRSLGVCPQYNALF 140
G+L G+ K + ++ M + +L C +
Sbjct: 146 ELRPAKNVLIDGVL----GSGKTWVALDVCLSYKVQCKMDFKIFWL--NLKNCNSPETVL 199
Query: 141 DKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRK------ 194
+ L Q+ P ++ + S+ I + S+ L ++ K
Sbjct: 200 EMLQK-----LLYQID--PNWTSRSDHSS-----NIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 195 --LDNV---KVW--FNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLT 247
L NV K W FN I + L A+ +++S D H M LT
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTT-RFKQVTDFLSAATTTHISLDH-------HSMTLT 299
Query: 248 HKQMALETL-KKAGTSI----LVAVTVL-FAMSFVPASTVILDEPTSGVDPYSRRSIWEL 301
+ L K +T +S + S + + + D + + +L
Sbjct: 300 PDE-VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES---IRDGLATWDNWKHVNCDKL 355
Query: 302 --LIKVYYASHSLSGRTVILTTHYMDEA------------------DLLGDRIAIIAAGK 341
+I+ L + + D++ + ++
Sbjct: 356 TTIIESSLN--VLE--PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN-- 409
Query: 342 LQCCGSSVFLKNSFARGYYL-SLDMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVR 400
+ S+ K + S+ ++ + AL+ + ++ Y+ +
Sbjct: 410 -KLHKYSLVEKQPKESTISIPSIYLELKVK------LENEYALHRSI-----VDHYNIPK 457
Query: 401 NLPSVLLNTIVNESLNK---FALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLD 455
S + ++ L++ +GH+ L + + L ++FLD
Sbjct: 458 TFDS---DDLIPPYLDQYFYSHIGHH-------LKNIEHPER---MTLF---RMVFLD 499
Score = 49.1 bits (116), Expect = 4e-06
Identities = 49/370 (13%), Positives = 118/370 (31%), Gaps = 96/370 (25%)
Query: 148 HMWF-YSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKA 206
HM F + + KD+ + + + + + LS + ++D++ + + +
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILS---KEEIDHIIMSKDAVS 62
Query: 207 ------WIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAG 260
W ++ ++ + V R +Y + + E + +
Sbjct: 63 GTLRLFWT----LLSKQEEMVQKFV--EEVLRINYKFLM---------SPIKTEQRQPSM 107
Query: 261 TSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIW--ELLIKVYYASHSL-SGRTV 317
+T ++ D + +++ ++ + +K+ A L + V
Sbjct: 108 ------MTRMYIEQ--------RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153
Query: 318 ILTTHYMDEADLLGDRIAIIAAGK----LQCCGSSVFLKNSFARGYYLSLDMKSAP---- 369
++ + LG +GK L C S + ++L+L ++P
Sbjct: 154 LI--DGV-----LG-------SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 370 ---QKSYIGYCPQFDALNDRL-TPREHLE-FYSRVRNL------PSVLLNTIV-----NE 413
QK P + + +D + + + +R L + LL ++ +
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL--VLLNVQNAK 257
Query: 414 SLNKFALGHYSDREVRTL--SGGNKRKLSTAIALLGNTPL-IFLDEPTSGMDPG-ARRFL 469
+ N F L + L + R L T I LD + + P + L
Sbjct: 258 AWNAFNLS------CKILLTT----RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 470 WTCIERAVSE 479
++ +
Sbjct: 308 LKYLDCRPQD 317
Score = 48.7 bits (115), Expect = 5e-06
Identities = 75/534 (14%), Positives = 144/534 (26%), Gaps = 205/534 (38%)
Query: 111 TAKIYDH--DIRTDMTTIRRSLGVCPQYNALFDKLTVEEHM-----WFYSQLKQVPKD-- 161
+ + DH + ++ R + VEE + + S +K +
Sbjct: 47 SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS 106
Query: 162 -------------------------------------LAQLEISNMI---GDLGIPHKRT 181
L +L + + G LG +T
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS--GKT 164
Query: 182 SLANT--LSGGMQRKLDNVKV-WFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIV 238
+A LS +Q K+D K+ W N K + + + ++ + P+ SR D
Sbjct: 165 WVALDVCLSYKVQCKMDF-KIFWLNLKNCNSPETVLEMLQKLLYQID-PNWTSRSD---- 218
Query: 239 AINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSI 298
H N+ + + +++ + L ++L + + +
Sbjct: 219 ---HSSNIKLR---IHSIQA-------ELRRLLKSKPYENCLLVLL------NVQNAK-A 258
Query: 299 WELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARG 358
W +LS + ++ TT + D L S A
Sbjct: 259 WNAF--------NLSCKILL-TTRFKQVTDFL-----------------------SAATT 286
Query: 359 YYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVRN-----LPSV------LL 407
++SLD S LTP E + + LP
Sbjct: 287 THISLDHHSMT-----------------LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329
Query: 408 NTIVNESL-------------NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFL 454
+I+ ES+ N L + + L RK+ ++ +F
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS-------VFP 382
Query: 455 DE---PTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCL 511
PT + +W + + + + KL
Sbjct: 383 PSAHIPTILLS-----LIWFDVIK---------------SDVMVVVNKL----------- 411
Query: 512 GSATHLKSKYGQGYSVKVRCAEGRSADAQTYLSLNLPVADLVETHATQL-QYRI 564
H S V+ + E + YL L + + + H + + Y I
Sbjct: 412 ----HKYS------LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 66.2 bits (162), Expect = 1e-11
Identities = 28/131 (21%), Positives = 52/131 (39%), Gaps = 5/131 (3%)
Query: 374 IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSG 433
+ Y PQ+ + T E + N E L + DREV LSG
Sbjct: 349 VAYKPQYIKADYEGTVYE--LLSKIDA--SKLNSNFYKTELLKPLGIIDLYDREVNELSG 404
Query: 434 GNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIER-AVSEGRCVILTSHNMEE 492
G ++++ A LL + + LDEP++ +D R + I + ++ H++
Sbjct: 405 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLM 464
Query: 493 CEALCTKLTIM 503
+ + +L +
Sbjct: 465 IDYVSDRLMVF 475
Score = 56.5 bits (137), Expect = 1e-08
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 6/113 (5%)
Query: 378 PQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKR 437
PQ+ L + + +E L + E + L + +RE++ LSGG +
Sbjct: 112 PQYVDLIPKAVKGKVIE------LLKKADETGKLEEVVKALELENVLEREIQHLSGGELQ 165
Query: 438 KLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
+++ A ALL N F DEP+S +D R I R EG+ V++ H++
Sbjct: 166 RVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDL 218
Score = 36.1 bits (84), Expect = 0.031
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSL--SGRTVILTTHYMDEADLLGDRIAII 337
DEP+S +D R + + L G++V++ H + D L D I ++
Sbjct: 181 FFDEPSSYLDIRQRLNAARAI-------RRLSEEGKSVLVVEHDLAVLDYLSDIIHVV 231
Score = 34.6 bits (80), Expect = 0.11
Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAI 336
A +LDEP++ +D R ++ + + +T ++ H + D + DR+ +
Sbjct: 419 DADIYLLDEPSAYLDVEQRLAVSRAIRH--LMEK--NEKTALVVEHDVLMIDYVSDRLMV 474
Query: 337 I 337
Sbjct: 475 F 475
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 64.7 bits (157), Expect = 2e-11
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 425 DREVRTLSGGNKR------KLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVS 478
+R + LSGG + +L+ ++ L G L+ LDEPT +D RR L T +ER +
Sbjct: 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK 302
Query: 479 EGRCVILTSHNME 491
+ VIL SH+ E
Sbjct: 303 KIPQVILVSHDEE 315
Score = 35.4 bits (81), Expect = 0.040
Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 8/80 (10%)
Query: 260 GTSILVAVTVLFAMSFV---PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRT 316
G I + + AMS S +ILDEPT +D RR + ++ +
Sbjct: 252 GERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERY-----LKKIPQ 306
Query: 317 VILTTHYMDEADLLGDRIAI 336
VIL +H + D I I
Sbjct: 307 VILVSHDEELKDAADHVIRI 326
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 63.7 bits (156), Expect = 2e-11
Identities = 26/95 (27%), Positives = 45/95 (47%)
Query: 413 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTC 472
+ L L H DR+ LSGG + + AL+ N +I +DEP +G+ PG ++
Sbjct: 136 KILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNH 195
Query: 473 IERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 507
+ ++G ++ H ++ L +M NGQ
Sbjct: 196 VLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQ 230
Score = 31.7 bits (73), Expect = 0.59
Identities = 22/118 (18%), Positives = 38/118 (32%), Gaps = 29/118 (24%)
Query: 100 MLMGMLPVSSGTAKIYDHDIRTDMTTIRR-SLGVCP--QYNALFDKLTVEEHM------- 149
++ G L G + DI T+ G+ Q ++TV E++
Sbjct: 52 VITGFLKADEGRVYFENKDI-TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICP 110
Query: 150 --------WFYSQLKQ----VPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKL 195
++ + + V K LE L + H A LSGG + +
Sbjct: 111 GESPLNSLFYKKWIPKEEEMVEKAFKILEF------LKLSHLYDRKAGELSGGQMKLV 162
Score = 28.6 bits (65), Expect = 5.5
Identities = 13/62 (20%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
+++DEP +GV P I+ ++++ G T ++ H +D D + ++ G
Sbjct: 175 IVMDEPIAGVAPGLAHDIFNHVLEL-----KAKGITFLIIEHRLDIVLNYIDHLYVMFNG 229
Query: 341 KL 342
++
Sbjct: 230 QI 231
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B*
1us8_B*
Length = 148
Score = 58.2 bits (141), Expect = 2e-10
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 9/118 (7%)
Query: 381 DALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYS-DREVRTLSGGNK--- 436
AL+ E ++ + E+ + + +R + LSGG +
Sbjct: 9 AALS--KIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIAL 66
Query: 437 ---RKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 491
+L+ ++ L G L+ LDEPT +D RR L T +ER + + VIL SH+ E
Sbjct: 67 GLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE 124
Score = 33.6 bits (77), Expect = 0.069
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 12/52 (23%)
Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSL--SGRTVILTTH---YMDEAD 328
ILDEPT +D RR + ++ VIL +H D AD
Sbjct: 86 ILDEPTPYLDEERRRKLITIM-------ERYLKKIPQVILVSHDEELKDAAD 130
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 61.6 bits (149), Expect = 6e-10
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 424 SDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRC 482
S +R LSGG K KL A LI LDEPT+ +D + L +A+ E
Sbjct: 895 SHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGAL----SKALKEFEGG 950
Query: 483 VILTSHNMEECEALCTKLTIMVNGQFT 509
VI+ +H+ E + L ++ + +G+ T
Sbjct: 951 VIIITHSAEFTKNLTEEVWAVKDGRMT 977
Score = 47.3 bits (112), Expect = 1e-05
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC-V 483
+ LSGG K KL+ A A+L N ++ LDEPT+ +D +L ++
Sbjct: 543 AMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWL----VNYLNTCGITS 598
Query: 484 ILTSHNMEECEALCTKLTIMVNGQFT 509
I SH+ + +C + +
Sbjct: 599 ITISHDSVFLDNVCEYIINYEGLKLR 624
Score = 32.3 bits (73), Expect = 0.52
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 269 VLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEAD 328
VL A ++ ++LDEPT+ +D S ++ +K + VI+ TH +
Sbjct: 911 VLAAGTWQRPHLIVLDEPTNYLDRDSLGAL-SKALKEF-------EGGVIIITHSAEFTK 962
Query: 329 LLGDRIAIIAAGKLQ 343
L + + + G++
Sbjct: 963 NLTEEVWAVKDGRMT 977
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.9 bits (142), Expect = 4e-09
Identities = 75/448 (16%), Positives = 134/448 (29%), Gaps = 195/448 (43%)
Query: 18 RSFLPAANIHKISGSEVTYVLPQDPASMG-------AYV----------------SLFES 54
+L +IH ++ +L ++ ++ Y+ +LF +
Sbjct: 93 NCYLEGNDIHALAAK----LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRA 148
Query: 55 LSENRDKLGIDSY------GISDTSLEE-QPLGPSGITLGLHTLGLEFVSRS--MLMGML 105
+ E +L G +D EE + L + H L + + S L ++
Sbjct: 149 VGEGNAQL----VAIFGGQGNTDDYFEELRDLYQTY-----HVLVGDLIKFSAETLSELI 199
Query: 106 PVSSGTAKIYDH--DIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK---QVPK 160
+ K++ +I W L+ P
Sbjct: 200 RTTLDAEKVFTQGLNILE----------------------------W----LENPSNTPD 227
Query: 161 D--LAQLEIS-NMIG------------DLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNK 205
L + IS +IG LG L + L G ++
Sbjct: 228 KDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPG--ELRSYLKGATGH----------SQ 275
Query: 206 AWIAAV---------SFMNAANNVI-------LRA-------SLPSNVSRDDYAIVAINH 242
+ AV SF + I +R SLP ++ D + N
Sbjct: 276 GLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDS---LENNE 332
Query: 243 ----PM----NLTHKQMALETLKK------AGTSILVAVTVLF--AMSFV----PASTVI 282
PM NLT +Q+ + + K AG + ++ L A + V P S
Sbjct: 333 GVPSPMLSISNLTQEQV-QDYVNKTNSHLPAGKQVEIS---LVNGAKNLVVSGPPQSLYG 388
Query: 283 LD------EPTSGVD----PYSRRSI---WELL-IKVYYASHSLSGRTVILTTHYMDEA- 327
L+ + SG+D P+S R + L + + HS H + A
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF--HS----------HLLVPAS 436
Query: 328 -----DLLGDRIAIIAAGKLQCCGSSVF 350
DL+ + ++ A +Q V+
Sbjct: 437 DLINKDLVKNNVS-FNAKDIQI---PVY 460
Score = 55.8 bits (134), Expect = 4e-08
Identities = 78/435 (17%), Positives = 126/435 (28%), Gaps = 130/435 (29%)
Query: 243 PMNLTHKQM------------ALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGV 290
P+ L+H + L++ IL T FA DEPT+
Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAAD---------DEPTTPA 58
Query: 291 DPYSRRSIWELLIK-VYYASH-----SLSGRTVILTTHYMD-EADLL-GDRIAIIAAGKL 342
EL+ K + Y S + +L + E L G+ I +AA L
Sbjct: 59 ---------ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLL 109
Query: 343 QCCGSSVFLKNSFARGYYLSLDMKSAPQKSYIGYCPQ---FDALND---RL--------T 388
Q +++ + Y + M P F A+ + +L
Sbjct: 110 QENDTTLVKTKELIKNYITARIMAKRPFDK----KSNSALFRAVGEGNAQLVAIFGGQGN 165
Query: 389 PREHL----EFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRT--------LSGGNK 436
++ + Y L L+ E+L++ +V T L +
Sbjct: 166 TDDYFEELRDLYQTYHVLVGDLIKFS-AETLSELIRTTLDAEKVFTQGLNILEWLENPSN 224
Query: 437 RK-----LSTAIALLGNTPLIFLDE--------PTSGMDPG--ARRFLW--TCIERAVSE 479
LS I+ PLI + + G PG + V+
Sbjct: 225 TPDKDYLLSIPISC----PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA 280
Query: 480 GRCVILTSHNMEECEALCTK-LTIM----VNGQ----FTCLGSATHLKS-KYGQGY---- 525
I + + E K +T++ V T L + S + +G
Sbjct: 281 --VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM 338
Query: 526 -SVK-----------VRCAEGRSADAQTYLSL-NLPVADLVETHATQLQYRISGAVSDLG 572
S+ + A Q +SL N LV +SG L
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKN-LV----------VSGPPQSLY 387
Query: 573 ALFRTLESAKTEAGL 587
L TL AK +GL
Sbjct: 388 GLNLTLRKAKAPSGL 402
Score = 43.1 bits (101), Expect = 3e-04
Identities = 55/307 (17%), Positives = 81/307 (26%), Gaps = 117/307 (38%)
Query: 1 MFVVEYGTVRYDVTQLIRSFLPAANIHKISGSEVTYVLPQDPASMGAYVSLFESLSENRD 60
M + + V + N H LP +SL N
Sbjct: 338 MLSIS-NLTQEQVQDYVNKT----NSH----------LPAGKQ---VEISLV-----N-- 372
Query: 61 KLGIDSYGISDTSLEEQPLGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGT--AKIYDHD 118
G + +S GP L+ L L R SG ++I
Sbjct: 373 --GAKNLVVS---------GP---PQSLYGLNLTL--RK-----AKAPSGLDQSRI-PFS 410
Query: 119 IRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQL-----KQVPKDLAQLEISNMIGD 173
R +++ F + H S L + KDL + +S D
Sbjct: 411 ERK------------LKFSNRFLPVASPFH----SHLLVPASDLINKDLVKNNVSFNAKD 454
Query: 174 LGIPHKRTSLANTLSGGMQRKLDN------VKVWFNNKA-WIAAVSFMNAANNVILRASL 226
+ IP + +T G R L V W F A +++
Sbjct: 455 IQIP-----VYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQF--KATHILDFG-- 505
Query: 227 PSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEP 286
P S + LTH+ K GT + V + A T LD
Sbjct: 506 PGGASG-----LG-----VLTHRN-------KDGTGVRV----------IVAGT--LDIN 536
Query: 287 TSGVDPY 293
D Y
Sbjct: 537 PD--DDY 541
Score = 38.1 bits (88), Expect = 0.009
Identities = 55/352 (15%), Positives = 104/352 (29%), Gaps = 133/352 (37%)
Query: 289 GVDPYSR----RSIWELLIKVYYASHSLSGRTVI------LTTHYMDEADLLGDRIAIIA 338
G+D Y + +W + ++ S ++ LT H+ E G RI
Sbjct: 1632 GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK---GKRI---- 1684
Query: 339 AGKLQCCGSSVFLKNSFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLT------PREH 392
R Y ++ ++ F +N+ T +
Sbjct: 1685 ------------------RENYSAMIFETIVDGKLKTE-KIFKEINEHSTSYTFRSEKGL 1725
Query: 393 L---EF---------YSRVRNLPSVLLNTIVNESLNKFALGH----YS----DREVRTLS 432
L +F + +L S ++ FA GH Y+ +V +S
Sbjct: 1726 LSATQFTQPALTLMEKAAFEDLKS---KGLIPAD-ATFA-GHSLGEYAALASLADV--MS 1778
Query: 433 GGNKRKLSTAIALL---GNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 489
+ + + ++ G T + + G I A++ GR S +
Sbjct: 1779 ------IESLVEVVFYRGMTMQVAVPRDELGRSNYG------MI--AINPGRVAA--SFS 1822
Query: 490 MEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCAEGRSADAQTYLSLNLPV 549
E + + ++ G T G+ V++ Y N+
Sbjct: 1823 QEALQYVVERV-----------GKRT--------GWLVEI---------VN-Y---NVE- 1849
Query: 550 ADLVETHATQLQYRISGAVSDLGALFRTLESAKTEAGLIVDYSLSQT-SLED 600
Q QY +G + L + L K + I L ++ SLE+
Sbjct: 1850 --------NQ-QYVAAGDLRALDTVTNVLNFIKLQK--IDIIELQKSLSLEE 1890
Score = 37.0 bits (85), Expect = 0.023
Identities = 54/281 (19%), Positives = 85/281 (30%), Gaps = 105/281 (37%)
Query: 31 GSEVTYVLPQDPASMGAYVSLFESLSENR------DKLGIDSYGISDTSL-EEQPL---- 79
GS Q+ MG + L+++ + D D+YG S + P+
Sbjct: 1625 GS-------QEQG-MG--MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTI 1674
Query: 80 ---GPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSL------ 130
G G + R M+ + K+ I ++ S
Sbjct: 1675 HFGGEKGKRI-----------RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK 1723
Query: 131 GVC--PQYN--ALFDKLTVEEHMWFYSQLKQ---VPKDLAQLEISNMIGDLGIPHKRTSL 183
G+ Q+ AL +E + LK +P D + G H SL
Sbjct: 1724 GLLSATQFTQPALT---LME--KAAFEDLKSKGLIPAD------ATFAG-----H---SL 1764
Query: 184 ----ANTLSGGMQRKLDNVKVWFNNKAWIAAV-SFMNAANNVILRASLPSN-VSRD---- 233
A L A +A V S + V R V RD
Sbjct: 1765 GEYAA--L------------------ASLADVMSIESLVEVVFYRGMTMQVAVPRDELGR 1804
Query: 234 -DYAIVAINHP--MNLTHKQMAL----ETLKKAGTSILVAV 267
+Y ++AIN P + + Q AL E + K ++ V
Sbjct: 1805 SNYGMIAIN-PGRVAASFSQEALQYVVERVGKRTGWLVEIV 1844
Score = 36.6 bits (84), Expect = 0.028
Identities = 61/321 (19%), Positives = 96/321 (29%), Gaps = 114/321 (35%)
Query: 190 GMQRKL----DNVK-VWFNNKA----------WIAAVSFMNAANNVILRASLPSNVSRDD 234
GM L + VW N+A I + N N I R++
Sbjct: 1630 GMGMDLYKTSKAAQDVW--NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIREN 1687
Query: 235 YAIVAINHPMNLTHKQMA-----LETLKKAGTSILVAVT------VLFAMSFV-PASTVI 282
Y + + + E + K + T +L A F PA T++
Sbjct: 1688 Y--------SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLM 1739
Query: 283 LDEPTSGVDPYSRRSIWELL-------IKVYYASHSLSGRTVILTTHYMDEADLLGDRIA 335
++ +E L +A HSL G E
Sbjct: 1740 ------------EKAAFEDLKSKGLIPADATFAGHSL-G-----------E--------- 1766
Query: 336 IIAAGKLQCCGSSVF-----LKNSFARGYYLSLDMKSAPQ-KSYIGYCPQFDALN-DRLT 388
AA L + V ++ F RG + + + +S G A+N R+
Sbjct: 1767 -YAA--L-ASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMI----AINPGRVA 1818
Query: 389 P---REHLEFY-SRVRNLPSVLLNTIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTAI 443
+E L++ RV L+ IVN N Y V + G+ R L T
Sbjct: 1819 ASFSQEALQYVVERVGKRTGWLV-EIVN--YN--VENQQY----V---AAGDLRALDTVT 1866
Query: 444 ALL-----GNTPLIFLDEPTS 459
+L +I L + S
Sbjct: 1867 NVLNFIKLQKIDIIELQKSLS 1887
Score = 29.2 bits (65), Expect = 5.1
Identities = 20/126 (15%), Positives = 37/126 (29%), Gaps = 45/126 (35%)
Query: 6 YGTVRY----DVTQLIRSFLPAANIHKISGSEVTYVLPQD---------PASMGAYVSLF 52
Y + + D N H + T+ + PA + F
Sbjct: 1688 YSAMIFETIVDGKLKTEKIFKEINEHS---TSYTFRSEKGLLSATQFTQPALTLMEKAAF 1744
Query: 53 ESLSENRDKLGIDSYGISDTSLEEQPLGPSGITL-GLHTLGLEF---VSRSMLMGMLPVS 108
E L+ + L P+ T G H+LG E+ S + ++ +
Sbjct: 1745 E-------------------DLKSKGLIPADATFAG-HSLG-EYAALASLA---DVMSIE 1780
Query: 109 SGTAKI 114
S ++
Sbjct: 1781 S-LVEV 1785
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 54.5 bits (132), Expect = 2e-08
Identities = 29/139 (20%), Positives = 55/139 (39%), Gaps = 15/139 (10%)
Query: 410 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTP-------LIFLDEPTSGMD 462
++N+ AL R LSGG +++ A +L TP L+ LDEP + +D
Sbjct: 106 LLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLD 165
Query: 463 PGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS------ATH 516
+ L + +G ++++SH++ + ++ G+ G +
Sbjct: 166 VAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPN 225
Query: 517 LKSKYGQGYSVKVRCAEGR 535
L Y G + + EG
Sbjct: 226 LAQAY--GMNFRRLDIEGH 242
Score = 39.8 bits (94), Expect = 0.001
Identities = 15/87 (17%), Positives = 37/87 (42%), Gaps = 13/87 (14%)
Query: 269 VLFAM--------SFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILT 320
V A + ++LDEP + +D + ++ ++L ++ S G ++++
Sbjct: 135 VRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKIL-----SALSQQGLAIVMS 189
Query: 321 THYMDEADLLGDRIAIIAAGKLQCCGS 347
+H ++ R ++ GK+ G
Sbjct: 190 SHDLNHTLRHAHRAWLLKGGKMLASGR 216
Score = 31.8 bits (73), Expect = 0.46
Identities = 23/116 (19%), Positives = 37/116 (31%), Gaps = 22/116 (18%)
Query: 99 SMLMGMLPVSSGTAKIYDHDIRTDMTTIR--RSLGVCPQYNALFDKLTVEEHMWFYSQLK 156
+ + GM G+ + + + + Q V Y L
Sbjct: 44 ARMAGMTS-GKGSIQFAGQPLE-AWSATKLALHRAYLSQQQTPPFATPVWH----YLTLH 97
Query: 157 QVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGG-MQRKLDNVKVWFNNKAWIAAV 211
Q K +L ++++ G L + K N LSGG QR +AAV
Sbjct: 98 QHDKTRTEL-LNDVAGALALDDKLGRSTNQLSGGEWQR------------VRLAAV 140
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 49.8 bits (119), Expect = 1e-06
Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 8/87 (9%)
Query: 412 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIAL-------LGNTPLIFLDEPTSGMDPG 464
+ + LSGG + ++ ++ L I LDEPT +D
Sbjct: 262 TKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDEN 321
Query: 465 ARRFLWTCIERAVSEGRCVILTSHNME 491
R L + V +I+ +H+ E
Sbjct: 322 RRAKLAEIFRK-VKSIPQMIIITHHRE 347
Score = 31.0 bits (70), Expect = 1.1
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 11/80 (13%)
Query: 247 THKQMALETLKKAGTSILVAVTVLFAMSFV----PASTVILDEPTSGVDPYSRRSIWELL 302
+ + ++ L G I VA+++ A++ +ILDEPT +D R + E+
Sbjct: 272 PNGVLTIDNLS-GGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIF 330
Query: 303 IKVYYASHSLSGRTVILTTH 322
KV S +I+ TH
Sbjct: 331 RKVK------SIPQMIIITH 344
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 46.4 bits (110), Expect = 2e-05
Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 426 REVRTLSGGNKRKLSTAIAL------LGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE 479
R R LSGG + +S ++A+ G F+DE S +D + + + ++
Sbjct: 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERL 334
Query: 480 GRCVILTSH 488
+ ++ +H
Sbjct: 335 NKVIVFITH 343
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 43.7 bits (104), Expect = 8e-05
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 11/114 (9%)
Query: 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNA 138
LGP+G G LE ++ G++ G ++ DI T + RR +G PQ A
Sbjct: 30 LGPTGA--GKSVF-LE-----LIAGIVKPDRGEVRLNGADI-TPLPPERRGIGFVPQDYA 80
Query: 139 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQ 192
LF L+V ++ + L+ V + + M LGI H LSGG +
Sbjct: 81 LFPHLSVYRNIAY--GLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGER 132
Score = 39.8 bits (94), Expect = 0.001
Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 1/115 (0%)
Query: 400 RNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTS 459
RN+ V + V E K + H DR+ LSGG +++++ A AL+ L+ LDEP S
Sbjct: 96 RNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLS 155
Query: 460 GMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 513
+D + L + E ++ +H++ E L ++ +M+NG+ G
Sbjct: 156 AVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGK 210
Score = 35.6 bits (83), Expect = 0.027
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 283 LDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKL 342
LDEP S VD ++ + E L V ++ TH + EA +L D +A++ G++
Sbjct: 150 LDEPLSAVDLKTKGVLMEELRFV----QREFDVPILHVTHDLIEAAMLADEVAVMLNGRI 205
Query: 343 QCCGS 347
G
Sbjct: 206 VEKGK 210
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 43.5 bits (103), Expect = 1e-04
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 284 DEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKL 342
D+ TS +DP + RSI ELL + + L G T++L TH MD + D +A+I+ G+L
Sbjct: 188 DQATSALDPATTRSILELLKDI---NRRL-GLTILLITHEMDVVKRICDCVAVISNGEL 242
Score = 37.3 bits (87), Expect = 0.011
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIA-LLGNTPLIFL-DEPTSGMDPGARRF 468
V E L+ LG D LSGG K+++ AIA L + P + L D+ TS +DP R
Sbjct: 144 VTELLSLVGLGDKHDSYPSNLSGGQKQRV--AIARALASNPKVLLCDQATSALDPATTRS 201
Query: 469 LWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQ 507
+ ++ G ++L +H M+ + +C + ++ NG+
Sbjct: 202 ILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGE 241
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 42.7 bits (101), Expect = 3e-04
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 488
LSGG K++++ A AL+ N ++ LDE TS +D + + +++A EGR I+ +H
Sbjct: 526 QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKA-REGRTTIVIAH 583
Score = 35.8 bits (83), Expect = 0.049
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 488
LSGG K++++ A AL+ ++ LDE TS +D + + + +++A EGR I+ +H
Sbjct: 1172 LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAH 1228
Score = 35.4 bits (82), Expect = 0.070
Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 13/64 (20%)
Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMD---EADLLGDRIAIIA 338
+LDE TS +D S + L K GRT I+ H + A D IA
Sbjct: 549 LLDEATSALDTESEAVVQAALDKA------REGRTTIVIAHRLSTVRNA----DVIAGFD 598
Query: 339 AGKL 342
G +
Sbjct: 599 GGVI 602
Score = 30.4 bits (69), Expect = 2.0
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 13/64 (20%)
Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHY---MDEADLLGDRIAIIA 338
+LDE TS +D S + + E L K GRT I+ H + A D I +I
Sbjct: 1194 LLDEATSALDTESEKVVQEALDKA------REGRTCIVIAHRLSTIQNA----DLIVVIQ 1243
Query: 339 AGKL 342
GK+
Sbjct: 1244 NGKV 1247
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 40.7 bits (96), Expect = 9e-04
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 488
LSGG K++++ A +L +I LDE TS +D R + + + V R I+ +H
Sbjct: 191 LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAK-VCANRTTIVVAH 247
Score = 33.0 bits (76), Expect = 0.27
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 107 VSSGTAKIYDHDIRTDMT--TIRRSLGVCPQYNALFD 141
+SSG +I DI +T ++R +GV PQ LF+
Sbjct: 106 ISSGCIRIDGQDIS-QVTQASLRSHIGVVPQDTVLFN 141
Score = 29.1 bits (66), Expect = 3.5
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTH 322
++LDE TS +D + R+I L KV + RT I+ H
Sbjct: 212 ILLDEATSALDTSNERAIQASLAKV------CANRTTIVVAH 247
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 40.2 bits (95), Expect = 0.001
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 488
LSGG +++++ A LL + ++ DE TS +D +E + + R +I+ +H
Sbjct: 156 LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVED-LRKNRTLIIIAH 212
Score = 28.7 bits (65), Expect = 5.0
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTH 322
VI DE TS +D + + + + RT+I+ H
Sbjct: 177 VIFDEATSSLDSKTEYLFQKAVEDL------RKNRTLIIIAH 212
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 38.7 bits (91), Expect = 0.003
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 10/73 (13%)
Query: 278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTH---YMDEADLLGDRI 334
A + D+P S VD + + I+E V L +T IL TH Y+ + D I
Sbjct: 146 ADIYLFDDPLSAVDAHVGKHIFE---NVIGPKGMLKNKTRILVTHSMSYLPQV----DVI 198
Query: 335 AIIAAGKLQCCGS 347
+++ GK+ GS
Sbjct: 199 IVMSGGKISEMGS 211
Score = 35.2 bits (82), Expect = 0.037
Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWT-CI-ERAVSEGRCVILTS 487
LSGG K+++S A A+ N + D+P S +D + ++ I + + + + IL +
Sbjct: 127 NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVT 186
Query: 488 HNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYG 522
H+M + +M G+ + +GS L ++ G
Sbjct: 187 HSMSYLPQ-VDVIIVMSGGKISEMGSYQELLARDG 220
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 39.0 bits (92), Expect = 0.003
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 488
LSGG +++++ A AL+ N ++ DE TS +D + + + + + +GR VI+ +H
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK-ICKGRTVIIIAH 202
Score = 31.3 bits (72), Expect = 0.81
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTH 322
I DE TS +D S I + K+ GRTVI+ H
Sbjct: 168 IFDEATSALDYESEHVIMRNMHKI------CKGRTVIIIAH 202
Score = 30.5 bits (70), Expect = 1.3
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 99 SMLMGMLP----VSSGTAKIYDHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEE 147
S L ++ +G I HD+ D +RR +GV Q N L ++ ++ +
Sbjct: 49 STLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNR-SIID 101
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 38.3 bits (90), Expect = 0.004
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 12/73 (16%)
Query: 278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTH---YMDEADLLGDRI 334
A +LD P +D + + I+E + ++ +T IL T ++ +A D+I
Sbjct: 149 ADLYLLDSPFGYLDVLTEKEIFESCVCKL-----MANKTRILVTSKMEHLKKA----DKI 199
Query: 335 AIIAAGKLQCCGS 347
I+ G G+
Sbjct: 200 LILHEGSSYFYGT 212
Score = 35.6 bits (83), Expect = 0.025
Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWT-CIERAVSEGRCVILTSH 488
TLSGG + ++S A A+ + L LD P +D + ++ C+ + ++ + IL +
Sbjct: 130 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA-NKTRILVTS 188
Query: 489 NMEECEALCTKLTIMVNGQFTCLGSATHLKSK 520
ME + K+ I+ G G+ + L++
Sbjct: 189 KMEHLKK-ADKILILHEGSSYFYGTFSELQNL 219
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 37.8 bits (89), Expect = 0.005
Identities = 18/64 (28%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 484
+R V+ +SGG +++L+ A A L N ++ LDE T+ +D + + ++ + +GR +
Sbjct: 135 ERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS-LMKGRTTL 192
Query: 485 LTSH 488
+ +H
Sbjct: 193 VIAH 196
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 38.1 bits (89), Expect = 0.006
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 12/73 (16%)
Query: 278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTH---YMDEADLLGDRI 334
A +LD P +D + + I+E + ++ +T IL T ++ +A D+I
Sbjct: 178 ADLYLLDSPFGYLDVLTEKEIFESCVCKL-----MANKTRILVTSKMEHLKKA----DKI 228
Query: 335 AIIAAGKLQCCGS 347
I+ G G+
Sbjct: 229 LILHEGSSYFYGT 241
Score = 37.3 bits (87), Expect = 0.011
Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWT-CIERAVSEGRCVILTSH 488
TLSGG + ++S A A+ + L LD P +D + ++ C+ + ++ + IL +
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA-NKTRILVTS 217
Query: 489 NMEECEALCTKLTIMVNGQFTCLGSATHLKSK 520
ME + K+ I+ G G+ + L++
Sbjct: 218 KMEHLKK-ADKILILHEGSSYFYGTFSELQNL 248
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 35.6 bits (83), Expect = 0.030
Identities = 21/79 (26%), Positives = 38/79 (48%)
Query: 413 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTC 472
L++ LG R+ LSGG +++++ A AL L+F DEPT +D + +
Sbjct: 123 YLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDI 182
Query: 473 IERAVSEGRCVILTSHNME 491
+ G +++ +H E
Sbjct: 183 FLKINEGGTSIVMVTHERE 201
Score = 32.1 bits (74), Expect = 0.34
Identities = 14/63 (22%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 281 VIL-DEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAA 339
++ DEPT +D + + + ++ +K+ + G ++++ TH + A+ L R +
Sbjct: 161 LLFADEPTGNLDSANTKRVMDIFLKI----NE-GGTSIVMVTHERELAE-LTHRTLEMKD 214
Query: 340 GKL 342
GK+
Sbjct: 215 GKV 217
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 35.6 bits (83), Expect = 0.031
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 6/64 (9%)
Query: 281 VIL-DEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAA 339
+IL D+PT +D + I +LL K+ + G+TV++ TH ++ A G+RI +
Sbjct: 166 IILADQPTWALDSKTGEKIMQLLKKL----NEEDGKTVVVVTHDINVAR-FGERIIYLKD 220
Query: 340 GKLQ 343
G+++
Sbjct: 221 GEVE 224
Score = 31.0 bits (71), Expect = 0.84
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPT 458
LSGG +++++ A AL N P+I D+PT
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPT 173
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 36.0 bits (84), Expect = 0.032
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
LSGG K++LS A L N P++ LDE TS +D
Sbjct: 477 KLSGGQKQRLSIARIFLNNPPILILDEATSALD 509
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 35.6 bits (83), Expect = 0.042
Identities = 15/33 (45%), Positives = 25/33 (75%)
Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
LSGG +++++ A ALL ++P++ LDE TS +D
Sbjct: 480 LLSGGQRQRIAIARALLRDSPILILDEATSALD 512
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 35.6 bits (83), Expect = 0.044
Identities = 15/33 (45%), Positives = 25/33 (75%)
Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
+LSGG +++++ A ALL + P++ LDE TS +D
Sbjct: 480 SLSGGQRQRVAIARALLRDAPVLILDEATSALD 512
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 35.1 bits (82), Expect = 0.047
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 12/99 (12%)
Query: 101 LMGMLPVSSGTAKIYDHDIRTDMTT---IRRSLGVCPQYNALFDKLTVEEHM----WFYS 153
+ G++ G DI T+ R + + P+ +F +LTV E++ +
Sbjct: 52 IAGLVRAQKGKIIFNGQDI-TNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK 110
Query: 154 QLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQ 192
+ + +DL I ++ L + L TLSGG Q
Sbjct: 111 DKEGIKRDLE--WIFSLFPRLK--ERLKQLGGTLSGGEQ 145
Score = 29.7 bits (68), Expect = 2.2
Identities = 24/88 (27%), Positives = 42/88 (47%)
Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 489
TLSGG ++ L+ AL+ L+ +DEP+ G+ P ++ I++ EG ++L N
Sbjct: 139 TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQN 198
Query: 490 MEECEALCTKLTIMVNGQFTCLGSATHL 517
+ ++ GQ G A+ L
Sbjct: 199 ALGALKVAHYGYVLETGQIVLEGKASEL 226
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 35.3 bits (82), Expect = 0.056
Identities = 19/65 (29%), Positives = 34/65 (52%)
Query: 398 RVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEP 457
R + +P ++ V E L L Y++R LSGG +++++ A AL ++ DEP
Sbjct: 113 REKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEP 172
Query: 458 TSGMD 462
+ +D
Sbjct: 173 FAAID 177
Score = 32.6 bits (75), Expect = 0.34
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 17/118 (14%)
Query: 79 LGPSG----ITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCP 134
LGPSG L R ++ G+ + G I + TD+ +R++G+
Sbjct: 47 LGPSGSGKTTIL-----------R-LIAGLERPTKGDVWIGGKRV-TDLPPQKRNVGLVF 93
Query: 135 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQ 192
Q ALF +TV +++ F + K+VPKD + ++ + + + LSGG Q
Sbjct: 94 QNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQ 151
Score = 29.5 bits (67), Expect = 2.8
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 283 LDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKL 342
DEP + +D RR + + +V H G T + TH +EA + DR+ ++ G +
Sbjct: 169 FDEPFAAIDTQIRRELRTFVRQV----HDEMGVTSVFVTHDQEEALEVADRVLVLHEGNV 224
Query: 343 QCCGS 347
+ G+
Sbjct: 225 EQFGT 229
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 34.9 bits (81), Expect = 0.062
Identities = 29/121 (23%), Positives = 40/121 (33%), Gaps = 19/121 (15%)
Query: 79 LGPSG----ITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTI---RRSLG 131
+G SG L R L G SG + I + T + R LG
Sbjct: 36 IGASGCGKTTLL-----------R-CLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLG 83
Query: 132 VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGM 191
Q LF LTV ++ + + + I M+ GI + LSGG
Sbjct: 84 YLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQ 143
Query: 192 Q 192
Q
Sbjct: 144 Q 144
Score = 33.7 bits (78), Expect = 0.17
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 283 LDEPTSGVDPYSRRSI-WELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGK 341
LDEP S +D RR I +++ A+ +G++ + +H +EA DRIA++ G+
Sbjct: 162 LDEPFSALDEQLRRQIREDMI-----AALRANGKSAVFVSHDREEALQYADRIAVMKQGR 216
Query: 342 LQ 343
+
Sbjct: 217 IL 218
Score = 32.2 bits (74), Expect = 0.51
Identities = 21/75 (28%), Positives = 27/75 (36%), Gaps = 10/75 (13%)
Query: 398 RVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNK-RKLSTAIAL---LGNTP-LI 452
+ + L + + R LSGG + R AL L P LI
Sbjct: 106 GNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQR-----AALARALAPDPELI 160
Query: 453 FLDEPTSGMDPGARR 467
LDEP S +D RR
Sbjct: 161 LLDEPFSALDEQLRR 175
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 34.0 bits (79), Expect = 0.100
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSH 488
LSGG ++ ++ A AL+ L+ LD TS +D G + + + + R V+L +
Sbjct: 156 QLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQ 215
Score = 29.8 bits (68), Expect = 2.2
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 11/64 (17%)
Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYM---DEADLLGDRIAIIA 338
ILD TS +D ++ + LL + + RTV+L T + + A I +
Sbjct: 179 ILDNATSALDAGNQLRVQRLLYES----PEWASRTVLLITQQLSLAERA----HHILFLK 230
Query: 339 AGKL 342
G +
Sbjct: 231 EGSV 234
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 34.2 bits (79), Expect = 0.11
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 387 LTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL 446
LT E++ F + + V E + H + R LSG +++++ A AL+
Sbjct: 97 LTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALV 156
Query: 447 GNTPLIFL-DEPTSGMD 462
+ P + L DEP S +D
Sbjct: 157 KD-PSLLLLDEPFSNLD 172
Score = 33.8 bits (78), Expect = 0.15
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 283 LDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKL 342
LDEP S +D R S L+ +V S G T+++ +H + + DR+ ++ GKL
Sbjct: 164 LDEPFSNLDARMRDSARALVKEV----QSRLGVTLLVVSHDPADIFAIADRVGVLVKGKL 219
Query: 343 QCCGS 347
G
Sbjct: 220 VQVGK 224
Score = 28.4 bits (64), Expect = 6.6
Identities = 29/128 (22%), Positives = 47/128 (36%), Gaps = 31/128 (24%)
Query: 79 LGPSG----ITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIR-----RS 129
LGPSG + R ++ G+ S+G D + + R
Sbjct: 37 LGPSGAGKTTFM-----------R-IIAGLDVPSTGELYFDDRLV-ASNGKLIVPPEDRK 83
Query: 130 LGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGD----LGIPHKRTSLAN 185
+G+ Q AL+ LT E++ F ++ K+ EI + + L I H
Sbjct: 84 IGMVFQTWALYPNLTAFENIAFPLTNMKMSKE----EIRKRVEEVAKILDIHHVLNHFPR 139
Query: 186 TLSGGMQR 193
LSG Q+
Sbjct: 140 ELSGA-QQ 146
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 33.7 bits (78), Expect = 0.14
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 398 RVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEP 457
+VR P E L+K L + +LSGG ++++ A AL ++ DEP
Sbjct: 127 KVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEP 186
Query: 458 TSGMDP 463
TS +DP
Sbjct: 187 TSALDP 192
Score = 30.6 bits (70), Expect = 1.1
Identities = 29/127 (22%), Positives = 54/127 (42%), Gaps = 30/127 (23%)
Query: 79 LGPSGI---TLGLHTL-GLEFVSRSMLMGMLPVSSGTAKIYDHDI---RTDMTTIRRSLG 131
+GPSG T L L LE G I ++ T++ +R +G
Sbjct: 56 IGPSGSGKSTF-LRCLNLLE-----------DFDEGEIIIDGINLKAKDTNLNKVREEVG 103
Query: 132 -VCPQYNALFDKLTVEEH-----MWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLAN 185
V ++N LF +TV + M +++ P++ A+ + ++ +G+ K + +
Sbjct: 104 MVFQRFN-LFPHMTVLNNITLAPMK----VRKWPREKAEAKAMELLDKVGLKDKAHAYPD 158
Query: 186 TLSGGMQ 192
+LSGG
Sbjct: 159 SLSGGQA 165
Score = 29.1 bits (66), Expect = 3.9
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 284 DEPTSGVDPYSRRSIWELLIKVYYASHSL--SGRTVILTTHYMDEADLLGDRIAIIAAGK 341
DEPTS +DP E++ +V L G T+++ TH M A +GDR+ + G
Sbjct: 184 DEPTSALDP-------EMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGY 236
Query: 342 L 342
+
Sbjct: 237 I 237
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 33.3 bits (77), Expect = 0.21
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
V ++ + H DR TLSGG +++++ A AL+ N ++ LDEP S +D
Sbjct: 108 VLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALD 159
Score = 31.4 bits (72), Expect = 0.82
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 283 LDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKL 342
LDEP S +DP ++ + E+L + H + TV+ TH EA ++ DRIA++ GKL
Sbjct: 151 LDEPLSALDPRTQENAREMLSVL----HKKNKLTVLHITHDQTEARIMADRIAVVMDGKL 206
Query: 343 Q 343
Sbjct: 207 I 207
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 32.9 bits (76), Expect = 0.30
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 99 SMLMGMLP----VSSGTAKIYDHDIRT-DMTTIRRSLGVCPQYNALF 140
S LM ++P G ++ + D+RT + +R + PQ LF
Sbjct: 383 STLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLF 429
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 32.1 bits (74), Expect = 0.42
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 281 VIL-DEPTSGVDPYSRRSIWELLIKVYYASHSL--SGRTVILTTHYMDEADLLGDRIAII 337
V+L DEPTS +DP EL+ +V L G+T+++ TH M A + + +
Sbjct: 174 VLLFDEPTSALDP-------ELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFL 226
Query: 338 AAGKLQCCGS 347
GK++ G
Sbjct: 227 HQGKIEEEGD 236
Score = 31.4 bits (72), Expect = 0.79
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 415 LNKFALGHYSDREV-RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDP 463
L K + + + LSGG ++++S A AL ++ DEPTS +DP
Sbjct: 137 LAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDP 186
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG,
PSI, protein structure initiative, joint center for S
genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2
c.2.1.1
Length = 380
Score = 31.8 bits (73), Expect = 0.71
Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 5/71 (7%)
Query: 234 DYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVL-FAMSFVPASTVILDEPT-SGVD 291
D+ + A L E L++ G + V V + F ++L T G+
Sbjct: 269 DFILEATGDSRAL---LEGSELLRRGGFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIW 325
Query: 292 PYSRRSIWELL 302
+ +
Sbjct: 326 VSDTSHFVKTV 336
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 31.6 bits (72), Expect = 0.74
Identities = 18/96 (18%), Positives = 42/96 (43%), Gaps = 16/96 (16%)
Query: 391 EHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTP 450
+ + S + P L +V+ LS G+K+ + A ++L
Sbjct: 130 DEVGLRSVIEQFPGKLDFVLVDGGCV--------------LSHGHKQLMCLARSVLSKAK 175
Query: 451 LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILT 486
++ LDEP++ +DP + + +++A ++ C ++
Sbjct: 176 ILLLDEPSAHLDPVTYQIIRRTLKQAFAD--CTVIL 209
Score = 30.1 bits (68), Expect = 2.2
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 11/94 (11%)
Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGK 341
+LDEP++ +DP + + I L + + + TVIL + EA L D+ +I K
Sbjct: 178 LLDEPSAHLDPVTYQIIRRTLKQ------AFADCTVILCEARI-EAMLECDQFLVIEENK 230
Query: 342 LQCCGS-SVFLKNS---FARGYYLSLDMKSAPQK 371
++ S F G+ S M P K
Sbjct: 231 VRQYDSILELYHYPADRFVAGFIGSPKMNFLPVK 264
>2gsx_A Complement receptor type 2; SCR domain, CCP domain, sushi domain,
immune system; NMR {Homo sapiens}
Length = 951
Score = 31.6 bits (71), Expect = 0.90
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 5/48 (10%)
Query: 487 SHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCAEG 534
+ CE C ++NGQ ++ G S+K C G
Sbjct: 380 EPSAPVCEKECQAPPNILNGQKEDRH-----MVRFDPGTSIKYSCNPG 422
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 31.0 bits (71), Expect = 1.4
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
LSGG K++++ A ALL N ++ LDE TS +D
Sbjct: 483 LLSGGQKQRIAIARALLKNPKILLLDEATSALD 515
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 30.7 bits (70), Expect = 1.5
Identities = 17/34 (50%), Positives = 20/34 (58%)
Query: 314 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 347
G T I TH EA +GDRIA++ G LQ GS
Sbjct: 190 GVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGS 223
Score = 29.1 bits (66), Expect = 4.9
Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 26/109 (23%)
Query: 100 MLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCP---------QYNALFDKLTVEEHMW 150
M+ G+ S G I D + + + V P Q AL+ +TV +++
Sbjct: 48 MIAGLEEPSRGQIYIGD----KLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIA 103
Query: 151 FYSQLKQVPKDLAQLEISNMIGD----LGIPH--KRTSLANTLSGGMQR 193
F +L++VP+ EI + + LG+ R LSGG QR
Sbjct: 104 FPLKLRKVPRQ----EIDQRVREVAELLGLTELLNRKPRE--LSGG-QR 145
>1gkn_A Complement receptor type 1; module, SCR, structure; NMR {Homo
sapiens} SCOP: g.18.1.1 g.18.1.1
Length = 128
Score = 29.4 bits (66), Expect = 1.6
Identities = 9/43 (20%), Positives = 13/43 (30%), Gaps = 4/43 (9%)
Query: 492 ECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCAEG 534
E EA C + + S + G S+K C
Sbjct: 1 EAEAHCQAPDHFLFAKLKT----QTTASDFPIGTSLKYECRPE 39
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 30.3 bits (69), Expect = 1.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 314 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 347
G T + TH EA + DRIA+I G++ G+
Sbjct: 184 GITTVYVTHDQAEALAMADRIAVIREGEILQVGT 217
Score = 29.9 bits (68), Expect = 2.6
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 388 TPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLG 447
T +++ F +R P ++ V E + +R LSGG +++++ A AL+
Sbjct: 91 TVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVK 150
Query: 448 NTPLIFL-DEPTSGMD 462
P + L DEP S +D
Sbjct: 151 E-PEVLLLDEPLSNLD 165
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 30.3 bits (69), Expect = 1.8
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 314 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 347
T I TH EA +GDRIA++ G+L GS
Sbjct: 192 KVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGS 225
Score = 28.4 bits (64), Expect = 7.8
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 388 TPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLG 447
T E++ F +++ P ++ V + + +R LSGG +++++ A A++
Sbjct: 99 TVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVV 158
Query: 448 NTPLIFL-DEPTSGMD 462
P + L DEP S +D
Sbjct: 159 E-PDVLLMDEPLSNLD 173
>2wii_C H factor 1, complement factor H; immune system, sushi, secreted,
polymorphism, glycoprotein, complement system,
complement pathway, immune response; HET: NAG BMA; 2.70A
{Homo sapiens} PDB: 2rlp_A 2rlq_A
Length = 277
Score = 30.3 bits (68), Expect = 1.8
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 487 SHNMEECEAL-CTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCAEG 534
++++ CE + C +T NG+ SA +Y G +V+ C G
Sbjct: 122 TNDIPICEVVKCLPVTAPENGKIVS--SAMEPDREYHFGQAVRFVCNSG 168
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 28.1 bits (63), Expect = 2.5
Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 236 AIVAIN-HPM-NLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAS 279
+V ++ P+ TH+ ++ + A + V +TV + P+S
Sbjct: 58 ELVYVDGIPVAGKTHRY-VIDLMHHAARNGQVNLTVRRKVLSGPSS 102
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 29.5 bits (67), Expect = 3.7
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 314 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 347
G T + TH EA + RIA+ GKL G+
Sbjct: 184 GITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGT 217
Score = 28.7 bits (65), Expect = 5.8
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 388 TPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLG 447
T E++ F R R + + V E K + + DR+ LSGG +++++ A AL+
Sbjct: 91 TVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVK 150
Query: 448 NTPLIFL-DEPTSGMD 462
P + L DEP S +D
Sbjct: 151 Q-PKVLLFDEPLSNLD 165
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 29.4 bits (67), Expect = 4.0
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 11/69 (15%)
Query: 430 TLSGGN-KR-KLSTAIALL-----GNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC 482
LSGG +R KL+T L G T + LDEPT+G+ P L + + V G
Sbjct: 730 ELSGGEAQRIKLATE---LRRSGRGGT-VYVLDEPTTGLHPADVERLQRQLVKLVDAGNT 785
Query: 483 VILTSHNME 491
VI H M+
Sbjct: 786 VIAVEHKMQ 794
>1ok3_A CD55, CR, DAF, complement decay-accelerating factor; regulator of
complement pathway, regulator of complement; 2.2A {Homo
sapiens} SCOP: g.18.1.1 g.18.1.1 g.18.1.1 g.18.1.1 PDB:
1ojw_A 1ojy_A 1ok1_A 1ok2_A 1ojv_A 1ok9_A 1m11_R 1nwv_A
2qzh_A 2qzf_A
Length = 254
Score = 29.1 bits (65), Expect = 4.0
Identities = 9/48 (18%), Positives = 15/48 (31%), Gaps = 3/48 (6%)
Query: 487 SHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCAEG 534
S E C C T + + ++ + G V+ C G
Sbjct: 56 SDIEEFCNRSCEVPTRLNSASLKQ---PYITQNYFPVGTVVEYECRPG 100
>3iyp_F Complement decay-accelerating factor; virus, receptor, complex,
echovirus, DAF, icosahedral virus; HET: DAO; 7.20A {Homo
sapiens}
Length = 381
Score = 29.3 bits (65), Expect = 4.6
Identities = 9/48 (18%), Positives = 15/48 (31%), Gaps = 3/48 (6%)
Query: 487 SHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCAEG 534
S E C C T + + ++ + G V+ C G
Sbjct: 88 SDIEEFCNRSCEVPTRLNSASLKQ---PYITQNYFPVGTVVEYECRPG 132
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA
complex, SOX; 2.05A {Mus musculus}
Length = 164
Score = 28.1 bits (62), Expect = 5.3
Identities = 10/28 (35%), Positives = 19/28 (67%), Gaps = 4/28 (14%)
Query: 178 HKRTSLANTLSGGMQRKLDNVKVWFNNK 205
H+ T LA++L +++ + V+VWF N+
Sbjct: 127 HEITGLADSL--QLEK--EVVRVWFCNR 150
>2bvb_A Micronemal protein 1; microneme, invasion, adhesion; NMR
{Toxoplasma gondii} PDB: 2k2s_A
Length = 137
Score = 27.4 bits (60), Expect = 6.9
Identities = 16/69 (23%), Positives = 31/69 (44%)
Query: 24 ANIHKISGSEVTYVLPQDPASMGAYVSLFESLSENRDKLGIDSYGISDTSLEEQPLGPSG 83
A + + +T++ + ++G+ SL + + K S D E+P GP+
Sbjct: 11 ATLEEGQQLTLTFISTKLDVAVGSCHSLVANFLDGFLKFQTGSNSAFDVVEVEEPAGPAV 70
Query: 84 ITLGLHTLG 92
+T+GL G
Sbjct: 71 LTIGLGHKG 79
>2qmc_A GGT, gamma-glutamyltranspeptidase; NTN-hydrolase, transferase; HET:
GTB; 1.55A {Helicobacter pylori} PDB: 2qm6_A* 3fnm_A*
2nqo_A
Length = 377
Score = 28.3 bits (64), Expect = 7.1
Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 11/60 (18%)
Query: 230 VSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSG 289
+ + +HP+ ++ + L++ G +I AV + FA++ V P +G
Sbjct: 30 IKNTKVGLALSSHPLA---SEIGQKVLEEGGNAIDAAVAIGFALAVV--------HPAAG 78
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.133 0.386
Gapped
Lambda K H
0.267 0.0792 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,869,555
Number of extensions: 536647
Number of successful extensions: 1226
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1169
Number of HSP's successfully gapped: 147
Length of query: 601
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 502
Effective length of database: 3,937,614
Effective search space: 1976682228
Effective search space used: 1976682228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.8 bits)