RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7365
(601 letters)
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 119 bits (299), Expect = 4e-31
Identities = 48/158 (30%), Positives = 73/158 (46%)
Query: 365 MKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYS 424
+ + I Y P+ + E+L F + S + +V + LG
Sbjct: 68 EEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKI 127
Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 484
V T S G RKL A AL+ N L LDEPTSG+D R + +++A EG ++
Sbjct: 128 KDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTIL 187
Query: 485 LTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYG 522
++SHNM E E LC ++ ++ NG G+ LK +Y
Sbjct: 188 VSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYK 225
Score = 67.7 bits (165), Expect = 2e-13
Identities = 22/130 (16%), Positives = 47/130 (36%), Gaps = 8/130 (6%)
Query: 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNA 138
+GP+G G T ++ ++ SSG ++ ++ + +R+ + P+
Sbjct: 34 IGPNGA--GKTTTL------RIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAG 85
Query: 139 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNV 198
+ + E++ F + + + G+ K +T S GM RKL
Sbjct: 86 AYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIA 145
Query: 199 KVWFNNKAWI 208
+ N
Sbjct: 146 RALMVNPRLA 155
Score = 65.0 bits (158), Expect = 2e-12
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 6/89 (6%)
Query: 269 VLFAMSFVP-ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEA 327
+L A + + ILDEPTSG+D + R + ++L + S G T+++++H M E
Sbjct: 142 LLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQ-----ASQEGLTILVSSHNMLEV 196
Query: 328 DLLGDRIAIIAAGKLQCCGSSVFLKNSFA 356
+ L DRIA+I G + G+ LK +
Sbjct: 197 EFLCDRIALIHNGTIVETGTVEELKERYK 225
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 113 bits (285), Expect = 3e-29
Identities = 32/150 (21%), Positives = 68/150 (45%), Gaps = 1/150 (0%)
Query: 369 PQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREV 428
P+ I Q A+ +T E++ F +++ P ++ V + + +R
Sbjct: 75 PKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP 134
Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTS 487
LSGG +++++ A A++ ++ +DEP S +D R + I++ + I +
Sbjct: 135 AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVT 194
Query: 488 HNMEECEALCTKLTIMVNGQFTCLGSATHL 517
H+ E + ++ +M GQ +GS T +
Sbjct: 195 HDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 224
Score = 72.1 bits (177), Expect = 8e-15
Identities = 36/171 (21%), Positives = 66/171 (38%), Gaps = 12/171 (7%)
Query: 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNA 138
LGPSG G T M+ G+ + G D D T + R++ + Q A
Sbjct: 38 LGPSGC--GKTTTL------RMIAGLEEPTEGRIYFGDRD-VTYLPPKDRNISMVFQSYA 88
Query: 139 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNV 198
++ +TV E++ F ++K+ PKD + L I LSGG ++++
Sbjct: 89 VWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVA 148
Query: 199 KVWFNNKAWIAA---VSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNL 246
+ + +S ++A V +RA + + + + H
Sbjct: 149 RAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVE 199
Score = 71.7 bits (176), Expect = 9e-15
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 269 VLFAMSFVP-ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEA 327
V A + V +++DEP S +D R ++ + K+ T I TH EA
Sbjct: 145 VAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKL----QQKLKVTTIYVTHDQVEA 200
Query: 328 DLLGDRIAIIAAGKLQCCGS 347
+GDRIA++ G+L GS
Sbjct: 201 MTMGDRIAVMNRGQLLQIGS 220
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 100 bits (250), Expect = 2e-24
Identities = 36/155 (23%), Positives = 67/155 (43%), Gaps = 1/155 (0%)
Query: 364 DMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHY 423
+ + + IG Q L T ++ + N P + V E L+ LG
Sbjct: 74 ESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDK 133
Query: 424 SDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAV-SEGRC 482
D LSGG K++++ A AL N ++ DE TS +DP R + ++ G
Sbjct: 134 HDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLT 193
Query: 483 VILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 517
++L +H M+ + +C + ++ NG+ + + +
Sbjct: 194 ILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 228
Score = 71.8 bits (176), Expect = 9e-15
Identities = 35/175 (20%), Positives = 73/175 (41%), Gaps = 15/175 (8%)
Query: 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDI----RTDMTTIRRSLGVCP 134
+G SG G TL + + + G+ + ++ +++T RR +G+
Sbjct: 37 IGASGA--GKSTLI------RCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIF 88
Query: 135 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRK 194
Q+ L TV ++ +L PKD + ++ ++ +G+ K S + LSGG +++
Sbjct: 89 QHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQR 148
Query: 195 LDNVKVWFNNKAWIAA---VSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNL 246
+ + +N + S ++ A + L R I+ I H M++
Sbjct: 149 VAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDV 203
Score = 58.7 bits (142), Expect = 2e-10
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 269 VLFAMSFVPASTVI-LDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEA 327
V A + V+ DE TS +DP + RSI EL + G T++L TH MD
Sbjct: 149 VAIARALASNPKVLLCDEATSALDPATTRSILEL----LKDINRRLGLTILLITHEMDVV 204
Query: 328 DLLGDRIAIIAAGKLQCCGS 347
+ D +A+I+ G+L +
Sbjct: 205 KRICDCVAVISNGELIEQDT 224
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 99.6 bits (248), Expect = 3e-24
Identities = 31/145 (21%), Positives = 56/145 (38%)
Query: 375 GYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGG 434
P+ + LT E+L + R + + L + TLSGG
Sbjct: 84 ALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGG 143
Query: 435 NKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECE 494
++ L+ AL+ L+ +DEP+ G+ P ++ I++ EG ++L N
Sbjct: 144 EQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGAL 203
Query: 495 ALCTKLTIMVNGQFTCLGSATHLKS 519
+ ++ GQ G A+ L
Sbjct: 204 KVAHYGYVLETGQIVLEGKASELLD 228
Score = 61.5 bits (149), Expect = 3e-11
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
+++DEP+ G+ P ++E++ K + G T++L A + ++ G
Sbjct: 161 LMMDEPSLGLAPILVSEVFEVIQK-----INQEGTTILLVEQNALGALKVAHYGYVLETG 215
Query: 341 KLQCCGS-SVFLKNSFARGYYL 361
++ G S L N R YL
Sbjct: 216 QIVLEGKASELLDNEMVRKAYL 237
Score = 45.3 bits (107), Expect = 7e-06
Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 10/119 (8%)
Query: 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIR--RSLGVCPQY 136
+G +G G T S + G++ G DI + + + P+
Sbjct: 38 IGANGA--GKTTTL------SAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEG 89
Query: 137 NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKL 195
+F +LTV E++ + ++ + + + + + L TLSGG Q+ L
Sbjct: 90 RRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQML 148
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 98.8 bits (246), Expect = 7e-24
Identities = 35/193 (18%), Positives = 75/193 (38%), Gaps = 6/193 (3%)
Query: 339 AGKLQCCGSSVFLKNSFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREH-LEFYS 397
G + G ++ L ++ + ++ + Q L +T E+ +E
Sbjct: 56 EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPI 115
Query: 398 RVRNLPSVLLNTIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDE 456
+V L + L K + + LSGG ++++S A AL ++ DE
Sbjct: 116 QVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDE 175
Query: 457 PTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSA-- 514
PTS +DP + +++ EG+ +++ +H M + + + + G+ G
Sbjct: 176 PTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQ 235
Query: 515 --THLKSKYGQGY 525
+ +S Q +
Sbjct: 236 VFGNPQSPRLQQF 248
Score = 64.5 bits (157), Expect = 4e-12
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 280 TVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAA 339
++ DEPTS +DP + + G+T+++ TH M A + + +
Sbjct: 170 VLLFDEPTSALDPELVGEVLR-----IMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQ 224
Query: 340 GKLQCCGS 347
GK++ G
Sbjct: 225 GKIEEEGD 232
Score = 55.2 bits (133), Expect = 5e-09
Identities = 29/187 (15%), Positives = 63/187 (33%), Gaps = 28/187 (14%)
Query: 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDI--------------RTDMT 124
+G SG G T + + S G + +I + +
Sbjct: 34 IGSSGS--GKSTFL------RCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLR 85
Query: 125 TIRRSLGVCPQYNALFDKLTVEEHMWFYS-QLKQVPKDLAQLEISNMIGDLGIPHK-RTS 182
+R L + Q+ L+ +TV E++ Q+ + K A+ + +GI + +
Sbjct: 86 LLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGK 145
Query: 183 LANTLSGGMQRKLDNVKVWFNNKAWIAA---VSFMNAANNVILRASLPSNVSRDDYAIVA 239
LSGG Q+++ + + S ++ + + + + +V
Sbjct: 146 YPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQL-AEEGKTMVV 204
Query: 240 INHPMNL 246
+ H M
Sbjct: 205 VTHEMGF 211
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 95.8 bits (238), Expect = 5e-23
Identities = 35/182 (19%), Positives = 74/182 (40%), Gaps = 3/182 (1%)
Query: 337 IAAGKLQCCGSSVFLKNSFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLEFY 396
+ AG + +++ + + P+ I Q AL +T +++ F
Sbjct: 48 MIAGLEEPSRGQIYIGDKLV--ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFP 105
Query: 397 SRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDE 456
++R +P ++ V E L +R+ R LSGG +++++ A++ + +DE
Sbjct: 106 LKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDE 165
Query: 457 PTSGMDPGARRFLWT-CIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSAT 515
P S +D R + + G I +H+ E + ++ +M G +GS
Sbjct: 166 PLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPD 225
Query: 516 HL 517
+
Sbjct: 226 EV 227
Score = 56.5 bits (136), Expect = 2e-09
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
++DEP S +D R + L K+ G T I TH EA +GDRIA++ G
Sbjct: 161 FLMDEPLSNLDAKLRVRMRAELKKL----QRQLGVTTIYVTHDQVEAMTMGDRIAVMNRG 216
Query: 341 KLQCCGS 347
LQ GS
Sbjct: 217 VLQQVGS 223
Score = 51.9 bits (124), Expect = 6e-08
Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 13/122 (10%)
Query: 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDI-----RTDMTTIRRSLGVC 133
LGPSG G T M+ G+ S G I D + + R + +
Sbjct: 35 LGPSGC--GKTTTL------RMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMV 86
Query: 134 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQR 193
Q AL+ +TV +++ F +L++VP+ + + LG+ LSGG ++
Sbjct: 87 FQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQ 146
Query: 194 KL 195
++
Sbjct: 147 RV 148
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 94.7 bits (235), Expect = 2e-22
Identities = 27/104 (25%), Positives = 46/104 (44%)
Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW 470
+ L L H DR+ LSGG + + AL+ N +I +DEP +G+ PG ++
Sbjct: 131 AFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIF 190
Query: 471 TCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSA 514
+ ++G ++ H ++ L +M NGQ G
Sbjct: 191 NHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRG 234
Score = 65.4 bits (159), Expect = 2e-12
Identities = 14/68 (20%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 280 TVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAA 339
+++DEP +GV P I+ ++++ G T ++ H +D D + ++
Sbjct: 171 MIVMDEPIAGVAPGLAHDIFNHVLEL-----KAKGITFLIIEHRLDIVLNYIDHLYVMFN 225
Query: 340 GKLQCCGS 347
G++ G
Sbjct: 226 GQIIAEGR 233
Score = 45.3 bits (107), Expect = 8e-06
Identities = 29/145 (20%), Positives = 50/145 (34%), Gaps = 23/145 (15%)
Query: 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVC--PQY 136
+GP+G G TL +++ G L G + DI G+ Q
Sbjct: 36 IGPNGS--GKSTLI------NVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQT 87
Query: 137 NALFDKLTVEEHMWFYSQL------------KQVPKDLAQLE-ISNMIGDLGIPHKRTSL 183
++TV E++ K +PK+ +E ++ L + H
Sbjct: 88 PQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRK 147
Query: 184 ANTLSGGMQRKLDNVKVWFNNKAWI 208
A LSGG + ++ + N I
Sbjct: 148 AGELSGGQMKLVEIGRALMTNPKMI 172
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 92.7 bits (230), Expect = 7e-22
Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 1/150 (0%)
Query: 369 PQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREV 428
P + +G Q AL L+ E++ F ++ ++N VN+ L H DR+
Sbjct: 69 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP 128
Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIER-AVSEGRCVILTS 487
+ LSGG +++++ L+ + LDEP S +D R + I R GR +I +
Sbjct: 129 KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVT 188
Query: 488 HNMEECEALCTKLTIMVNGQFTCLGSATHL 517
H+ E L K+ ++ G+ +G L
Sbjct: 189 HDQVEAMTLADKIVVLDAGRVAQVGKPLEL 218
Score = 57.7 bits (139), Expect = 6e-10
Identities = 31/140 (22%), Positives = 58/140 (41%), Gaps = 9/140 (6%)
Query: 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNA 138
+GPSG G TL M+ G+ ++SG I + D R +G+ Q A
Sbjct: 32 VGPSGC--GKSTLL------RMIAGLETITSGDLFIGEKR-MNDTPPAERGVGMVFQSYA 82
Query: 139 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNV 198
L+ L+V E+M F +L K++ ++ + L + H LSGG ++++
Sbjct: 83 LYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIG 142
Query: 199 KVWFNNKAWIAAVSFMNAAN 218
+ + ++ +
Sbjct: 143 RTLVAEPSVFLLDEPLSNLD 162
Score = 51.5 bits (123), Expect = 6e-08
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 269 VLFAMSFVPASTVIL-DEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEA 327
V + V +V L DEP S +D R + + ++ H GRT+I TH EA
Sbjct: 139 VAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRL----HKRLGRTMIYVTHDQVEA 194
Query: 328 DLLGDRIAIIAAGKLQCCGS 347
L D+I ++ AG++ G
Sbjct: 195 MTLADKIVVLDAGRVAQVGK 214
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 85.1 bits (210), Expect = 3e-19
Identities = 37/151 (24%), Positives = 65/151 (43%), Gaps = 1/151 (0%)
Query: 368 APQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDRE 427
P+ IG Q AL LT E++ F + + V E + H +
Sbjct: 78 PPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHF 137
Query: 428 VRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWT-CIERAVSEGRCVILT 486
R LSG +++++ A AL+ + L+ LDEP S +D R E G +++
Sbjct: 138 PRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVV 197
Query: 487 SHNMEECEALCTKLTIMVNGQFTCLGSATHL 517
SH+ + A+ ++ ++V G+ +G L
Sbjct: 198 SHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
Score = 58.2 bits (140), Expect = 4e-10
Identities = 35/175 (20%), Positives = 67/175 (38%), Gaps = 15/175 (8%)
Query: 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDI----RTDMTTIRRSLGVCP 134
LGPSG G T ++ G+ S+G D + + + R +G+
Sbjct: 37 LGPSGA--GKTTFM------RIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVF 88
Query: 135 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRK 194
Q AL+ LT E++ F ++ K+ + + + L I H LSG Q++
Sbjct: 89 QTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQR 148
Query: 195 LDNVKVWFNNKAWIA---AVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNL 246
+ + + + + S ++A RA + SR ++ ++H
Sbjct: 149 VALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPAD 203
Score = 55.9 bits (134), Expect = 3e-09
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 280 TVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAA 339
++LDEP S +D R S L+ +V S G T+++ +H + + DR+ ++
Sbjct: 161 LLLLDEPFSNLDARMRDSARALVKEV----QSRLGVTLLVVSHDPADIFAIADRVGVLVK 216
Query: 340 GKLQCCGS 347
GKL G
Sbjct: 217 GKLVQVGK 224
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 84.1 bits (208), Expect = 5e-19
Identities = 30/152 (19%), Positives = 68/152 (44%), Gaps = 6/152 (3%)
Query: 361 LSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFAL 420
L D + ++ IG+ Q L LT E++E + ++ +L +
Sbjct: 72 LDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKM 131
Query: 421 ----GHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERA 476
+++ + LSGG +++++ A AL N P+I D+PT +D + +++
Sbjct: 132 AELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKL 191
Query: 477 VSE-GRCVILTSHNMEECEALCTKLTIMVNGQ 507
E G+ V++ +H++ ++ + +G+
Sbjct: 192 NEEDGKTVVVVTHDINVAR-FGERIIYLKDGE 222
Score = 61.4 bits (149), Expect = 2e-11
Identities = 18/63 (28%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
++ D+PT +D + I +LL K+ + G+TV++ TH ++ A G+RI + G
Sbjct: 167 ILADQPTGALDSKTGEKIMQLLKKL----NEEDGKTVVVVTHDINVAR-FGERIIYLKDG 221
Query: 341 KLQ 343
+++
Sbjct: 222 EVE 224
Score = 46.8 bits (111), Expect = 2e-06
Identities = 30/180 (16%), Positives = 60/180 (33%), Gaps = 20/180 (11%)
Query: 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDI-----RTDMTTIRRSLGVC 133
+GPSG G T+ +++ + + G I + R +G
Sbjct: 37 MGPSGS--GKSTML------NIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFV 88
Query: 134 PQYNALFDKLTVEEHMWF---YSQLKQVPKDLAQLEISNMIGDLGIPHK-RTSLANTLSG 189
Q L LT E++ + + + + + + + N LSG
Sbjct: 89 FQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSG 148
Query: 190 GMQRKLDNVKVWFNNKAWIAA---VSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNL 246
G Q+++ + NN I A +++ + L D +V + H +N+
Sbjct: 149 GQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINV 208
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 80.0 bits (197), Expect = 7e-18
Identities = 29/170 (17%), Positives = 66/170 (38%), Gaps = 14/170 (8%)
Query: 331 GDRIAIIA---AGK---LQCCGSSVFLKNSFARGYYLSLDMKSAPQKSYIGYCPQFDALN 384
G+ + GK L+ + +LK Y + + K I + P+ +
Sbjct: 27 GNVVNFHGPNGIGKTTLLKTIST--YLKPLKGEIIYNGVPITKVKGK--IFFLPEEIIVP 82
Query: 385 DRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIA 444
+++ ++L+ + + + + ++L + + + LS G R++ A
Sbjct: 83 RKISVEDYLKAVASLYGVKVN--KNEIMDALESVEVLDLKKK-LGELSQGTIRRVQLAST 139
Query: 445 LLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEEC 493
LL N + LD+P +D ++ + I + E G +I + + C
Sbjct: 140 LLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYC 189
Score = 53.8 bits (129), Expect = 6e-09
Identities = 24/168 (14%), Positives = 57/168 (33%), Gaps = 24/168 (14%)
Query: 181 TSLANTLSGGMQRKLDNVKV----WFNNKAWIAAVS-------FMNAANNVILRASLPSN 229
T+L T+S ++ + K I + ++ + + ASL
Sbjct: 41 TTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLY-G 99
Query: 230 VSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSG 289
V + I+ + + + L L + GT V + ++ +LD+P
Sbjct: 100 VKVNKNEIMDALESVEVLDLKKKLGELSQ-GTIRRVQLASTLLVNA---EIYVLDDPVVA 155
Query: 290 VDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAII 337
+D S+ + + ++++ G +I + + D +
Sbjct: 156 IDEDSKHKVLKSILEI----LKEKGIVIISSREELSYC----DVNENL 195
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 78.4 bits (193), Expect = 4e-17
Identities = 27/152 (17%), Positives = 55/152 (36%), Gaps = 12/152 (7%)
Query: 373 YIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLS 432
+ Y Q +L + + ++N+ AL R LS
Sbjct: 73 HRAYLSQQQTPPFATPVWHYLTLHQHDKTRTE-----LLNDVAGALALDDKLGRSTNQLS 127
Query: 433 GGNKRKLSTAIALLGNTP-------LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL 485
GG +++ A +L TP L+ LDEP + +D + L + +G +++
Sbjct: 128 GGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVM 187
Query: 486 TSHNMEECEALCTKLTIMVNGQFTCLGSATHL 517
+SH++ + ++ G+ G +
Sbjct: 188 SSHDLNHTLRHAHRAWLLKGGKMLASGRREEV 219
Score = 61.9 bits (150), Expect = 2e-11
Identities = 12/67 (17%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
++LDEP + +D + ++ ++L + G +++++H ++ R ++ G
Sbjct: 154 LLLDEPMNSLDVAQQSALDKILSALCQ-----QGLAIVMSSHDLNHTLRHAHRAWLLKGG 208
Query: 341 KLQCCGS 347
K+ G
Sbjct: 209 KMLASGR 215
Score = 43.8 bits (103), Expect = 3e-05
Identities = 25/138 (18%), Positives = 45/138 (32%), Gaps = 21/138 (15%)
Query: 65 DSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHD 118
+S + S E + +GP+G G TL + + GM G+ +
Sbjct: 11 ESTRLGPLSGEVRAGEILHLVGPNGA--GKSTLL------ARMAGMTS-GKGSIQFAGQP 61
Query: 119 IRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIP 177
+ T + Q V ++ + K + L + G L +
Sbjct: 62 LEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLND-----VAGALALD 116
Query: 178 HKRTSLANTLSGGMQRKL 195
K N LSGG +++
Sbjct: 117 DKLGRSTNQLSGGEWQRV 134
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 77.8 bits (191), Expect = 8e-17
Identities = 35/153 (22%), Positives = 71/153 (46%), Gaps = 4/153 (2%)
Query: 369 PQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREV 428
P+K I + Q +L + +++LEF R++ + V ++ + H DR
Sbjct: 69 PEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKD---PKRVLDTARDLKIEHLLDRNP 125
Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWT-CIERAVSEGRCVILTS 487
TLSGG +++++ A AL+ N ++ LDEP S +DP + V+ +
Sbjct: 126 LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHIT 185
Query: 488 HNMEECEALCTKLTIMVNGQFTCLGSATHLKSK 520
H+ E + ++ ++++G+ +G + K
Sbjct: 186 HDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218
Score = 56.6 bits (136), Expect = 1e-09
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 279 STVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIA 338
++LDEP S +DP ++ + E+L + H + TV+ TH EA ++ DRIA++
Sbjct: 147 KILLLDEPLSALDPRTQENAREMLSVL----HKKNKLTVLHITHDQTEARIMADRIAVVM 202
Query: 339 AGKLQCCGS 347
GKL G
Sbjct: 203 DGKLIQVGK 211
Score = 51.6 bits (123), Expect = 6e-08
Identities = 34/171 (19%), Positives = 65/171 (38%), Gaps = 15/171 (8%)
Query: 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNA 138
LGP+G G ++ G SG + D TD++ + + Q +
Sbjct: 32 LGPTGA--GKTLFL------ELIAGFHVPDSGRILLDGKD-VTDLSPEKHDIAFVYQNYS 82
Query: 139 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNV 198
LF + V++++ F ++K++ L+ DL I H TLSGG Q+++
Sbjct: 83 LFPHMNVKKNLEFGMRMKKIKDPKRVLD---TARDLKIEHLLDRNPLTLSGGEQQRVALA 139
Query: 199 KVWFNNKAWIAA---VSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNL 246
+ N + +S ++ R L ++ ++ I H
Sbjct: 140 RALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTE 190
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 78.4 bits (193), Expect = 1e-16
Identities = 29/151 (19%), Positives = 55/151 (36%), Gaps = 6/151 (3%)
Query: 374 IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREV----R 429
+ +C QF + T +E++ F + + + +
Sbjct: 99 VSFCSQFSWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV 157
Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 489
TLSGG + ++S A A+ + L LD P +D ++ + + IL +
Sbjct: 158 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSK 217
Query: 490 MEECEALCTKLTIMVNGQFTCLGSATHLKSK 520
ME K+ I+ G G+ + L+S
Sbjct: 218 MEHLR-KADKILILHQGSSYFYGTFSELQSL 247
Score = 58.0 bits (140), Expect = 7e-10
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
+LD P +D ++ ++E + ++ +T IL T M E D+I I+ G
Sbjct: 180 YLLDSPFGYLDVFTEEQVFESCVC-----KLMANKTRILVTSKM-EHLRKADKILILHQG 233
Query: 341 KLQCCGS 347
G+
Sbjct: 234 SSYFYGT 240
Score = 36.0 bits (83), Expect = 0.010
Identities = 20/121 (16%), Positives = 40/121 (33%), Gaps = 25/121 (20%)
Query: 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNA 138
G +G G +L +++G L S G K + C Q++
Sbjct: 68 TGSTGS--GKTSLL------MLILGELEASEGIIKHSGR------------VSFCSQFSW 107
Query: 139 LFDKLTVEEHMWFYSQLKQVPKD--LAQLEISNMIGDL--GIPHKRTSLANTLSGGMQRK 194
+ T++E++ F + + ++ I TLSGG + +
Sbjct: 108 IMPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRAR 166
Query: 195 L 195
+
Sbjct: 167 I 167
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 73.5 bits (180), Expect = 3e-15
Identities = 40/150 (26%), Positives = 71/150 (47%), Gaps = 3/150 (2%)
Query: 369 PQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREV 428
P++ IG+ PQ AL L+ ++ + +RN+ V + V E K + H DR+
Sbjct: 67 PERRGIGFVPQDYALFPHLSVYRNIAYG--LRNVERVERDRRVREMAEKLGIAHLLDRKP 124
Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWT-CIERAVSEGRCVILTS 487
LSGG +++++ A AL+ L+ LDEP S +D + L ++ +
Sbjct: 125 ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVT 184
Query: 488 HNMEECEALCTKLTIMVNGQFTCLGSATHL 517
H++ E L ++ +M+NG+ G L
Sbjct: 185 HDLIEAAMLADEVAVMLNGRIVEKGKLKEL 214
Score = 61.6 bits (149), Expect = 3e-11
Identities = 36/171 (21%), Positives = 64/171 (37%), Gaps = 14/171 (8%)
Query: 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNA 138
LGP+G G ++ G++ G ++ DI T + RR +G PQ A
Sbjct: 30 LGPTGA--GKSVFL------ELIAGIVKPDRGEVRLNGADI-TPLPPERRGIGFVPQDYA 80
Query: 139 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNV 198
LF L+V ++ + + V + + M LGI H LSGG ++++
Sbjct: 81 LFPHLSVYRNIAYGLR--NVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALA 138
Query: 199 KVWFNNKAWIAAV---SFMNAANNVILRASLPSNVSRDDYAIVAINHPMNL 246
+ + S ++ +L L D I+ + H +
Sbjct: 139 RALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIE 189
Score = 50.0 bits (119), Expect = 2e-07
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 280 TVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAA 339
++LDEP S VD ++ + E L V ++ TH + EA +L D +A++
Sbjct: 147 LLLLDEPLSAVDLKTKGVLMEELRFV----QREFDVPILHVTHDLIEAAMLADEVAVMLN 202
Query: 340 GKLQCCGS 347
G++ G
Sbjct: 203 GRIVEKGK 210
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 65.7 bits (160), Expect = 1e-12
Identities = 30/168 (17%), Positives = 70/168 (41%), Gaps = 8/168 (4%)
Query: 364 DMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFAL--- 420
+ +G Q + L +R + +++ + ++ V+ + + + +
Sbjct: 69 LADPNWLRRQVGVVLQDNVLLNR-SIIDNISLANPGMSVEKVIYAAKLAGAHDFISELRE 127
Query: 421 --GHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVS 478
+ LSGG +++++ A AL+ N ++ DE TS +D + + + +
Sbjct: 128 GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM-HKIC 186
Query: 479 EGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYS 526
+GR VI+ +H + + ++ +M G+ G L S+ YS
Sbjct: 187 KGRTVIIIAHRLSTVK-NADRIIVMEKGKIVEQGKHKELLSEPESLYS 233
Score = 53.0 bits (127), Expect = 2e-08
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 10/84 (11%)
Query: 264 LVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHY 323
+A+ + +I DE TS +D S I + K+ GRTVI+ H
Sbjct: 147 RIAIARALVNNP---KILIFDEATSALDYESEHVIMRNMHKI------CKGRTVIIIAHR 197
Query: 324 MDEADLLGDRIAIIAAGKLQCCGS 347
+ DRI ++ GK+ G
Sbjct: 198 LSTVK-NADRIIVMEKGKIVEQGK 220
Score = 42.2 bits (99), Expect = 7e-05
Identities = 28/135 (20%), Positives = 50/135 (37%), Gaps = 13/135 (9%)
Query: 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-DMTTIRRSLGVCPQYN 137
+G SG G TL ++ +G I HD+ D +RR +GV Q N
Sbjct: 35 VGRSGS--GKSTLT------KLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDN 86
Query: 138 ALFDKLTVEEHMWF--YSQLKQVPKDLAQLEISNMIGDL--GIPHKRTSLANTLSGGMQR 193
L ++ ++ +++V + I +L G LSGG ++
Sbjct: 87 VLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQ 146
Query: 194 KLDNVKVWFNNKAWI 208
++ + NN +
Sbjct: 147 RIAIARALVNNPKIL 161
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 64.9 bits (158), Expect = 2e-12
Identities = 29/164 (17%), Positives = 68/164 (41%), Gaps = 7/164 (4%)
Query: 364 DMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSV---LLNTIVNESLNKFAL 420
+ A ++ + Q L + + + + + +NK
Sbjct: 81 EYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDN 140
Query: 421 G--HYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVS 478
G LSGG +++++ A ALL ++P++ LDE TS +D + R + ++
Sbjct: 141 GLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL-Q 199
Query: 479 EGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYG 522
+ R ++ +H + E ++ ++ +G G+ + L +++G
Sbjct: 200 KNRTSLVIAHRLSTIE-QADEIVVVEDGIIVERGTHSELLAQHG 242
Score = 54.1 bits (130), Expect = 1e-08
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
+ILDE TS +D S R+I L ++ RT ++ H + + D I ++ G
Sbjct: 174 LILDEATSALDTESERAIQAALDEL------QKNRTSLVIAHRLSTIE-QADEIVVVEDG 226
Query: 341 KLQCCGS 347
+ G+
Sbjct: 227 IIVERGT 233
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 62.2 bits (151), Expect = 2e-11
Identities = 33/165 (20%), Positives = 64/165 (38%), Gaps = 9/165 (5%)
Query: 364 DMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALG-- 421
++ +S IG+ Q A+ T RE+L + L + F
Sbjct: 68 NISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMP 126
Query: 422 ----HYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAV 477
+SGG +++L+ A A L N ++ LDE T+ +D + + ++ +
Sbjct: 127 DQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS-L 185
Query: 478 SEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYG 522
+GR ++ +H + K+ + GQ T G L + +
Sbjct: 186 MKGRTTLVIAHRLSTIV-DADKIYFIEKGQITGSGKHNELVATHP 229
Score = 46.8 bits (111), Expect = 3e-06
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
++LDE T+ +D S + + L + + GRT ++ H + + D+I I G
Sbjct: 161 LMLDEATASLDSESESMVQKALDSL------MKGRTTLVIAHRLSTI-VDADKIYFIEKG 213
Query: 341 KLQCCGS 347
++ G
Sbjct: 214 QITGSGK 220
Score = 42.9 bits (101), Expect = 5e-05
Identities = 23/123 (18%), Positives = 39/123 (31%), Gaps = 14/123 (11%)
Query: 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-DMTTIRRSLGVCPQYN 137
GPSG G T+ S+L ++G I I + R +G Q +
Sbjct: 34 AGPSGG--GKSTIF------SLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDS 85
Query: 138 ALFDKLTVEEHMWF-----YSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQ 192
A+ E + + DLA + + +SGG +
Sbjct: 86 AIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQR 145
Query: 193 RKL 195
++L
Sbjct: 146 QRL 148
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 62.5 bits (152), Expect = 2e-11
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 488
LSGG K++LS A L N P++ LDE TS +D + + ++ +S+ R ++ +H
Sbjct: 153 VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDV-LSKDRTTLIVAH 211
Query: 489 NMEECEALCTKLTIMVNGQFTCLGSATHLKSKYG 522
+ K+ ++ NG G+ L +K G
Sbjct: 212 RLSTI-THADKIVVIENGHIVETGTHRELIAKQG 244
Score = 50.9 bits (122), Expect = 1e-07
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
+ILDE TS +D S I E L + RT ++ H + D+I +I G
Sbjct: 176 LILDEATSALDLESESIIQEALDVL------SKDRTTLIVAHRLSTI-THADKIVVIENG 228
Query: 341 KLQCCGS 347
+ G+
Sbjct: 229 HIVETGT 235
Score = 44.4 bits (105), Expect = 1e-05
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 15/123 (12%)
Query: 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-DMTTIRRSLGVCPQYN 137
+G SG G TL +++ V+SG I H+I+ ++R +G+ Q N
Sbjct: 50 VGMSGG--GKSTLI------NLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDN 101
Query: 138 ALFDKLTVEEHMWF---YSQLKQVPKDLAQLEISNMIGDL--GIPHKRTSLANTLSGGMQ 192
LF TV+E++ + ++V + + I +L G + LSGG +
Sbjct: 102 ILFS-DTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQK 160
Query: 193 RKL 195
++L
Sbjct: 161 QRL 163
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 56.4 bits (136), Expect = 2e-09
Identities = 28/166 (16%), Positives = 60/166 (36%), Gaps = 9/166 (5%)
Query: 364 DMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALG-- 421
+ + Q + R + +E++ + + + V + F G
Sbjct: 80 QYEHRYLHRQVAAVGQEPQVFGR-SLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLP 138
Query: 422 ----HYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAV 477
D LSGG ++ ++ A AL+ ++ LD+ TS +D ++ + + +
Sbjct: 139 QGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESP 198
Query: 478 SE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYG 522
R V+L + ++ E + + G G+ L K G
Sbjct: 199 ERYSRSVLLITQHLSLVE-QADHILFLEGGAIREGGTHQQLMEKKG 243
Score = 48.7 bits (116), Expect = 7e-07
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
+ILD+ TS +D S+ + +LL + R+V+L T ++ + D I + G
Sbjct: 173 LILDDATSALDANSQLQVEQLLYES----PERYSRSVLLITQHLSLVE-QADHILFLEGG 227
Query: 341 KLQCCGS 347
++ G+
Sbjct: 228 AIREGGT 234
Score = 42.6 bits (100), Expect = 6e-05
Identities = 24/178 (13%), Positives = 65/178 (36%), Gaps = 19/178 (10%)
Query: 79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-DMTTIRRSLGVCPQYN 137
+GP+G G T+ ++L + + G + + + + R + Q
Sbjct: 46 VGPNGS--GKSTVA------ALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEP 97
Query: 138 ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDL------GIPHKRTSLANTLSGGM 191
+F +++E++ + K +++ + + G + + LSGG
Sbjct: 98 QVFG-RSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQ 156
Query: 192 QRKLDNVKVWFNNKA---WIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNL 246
++ + + A S ++A + + + L + R +++ I ++L
Sbjct: 157 RQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSL 214
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 57.2 bits (136), Expect = 2e-09
Identities = 23/58 (39%), Positives = 33/58 (56%)
Query: 434 GNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 491
G +L+ ++ L G L+ LDEPT +D RR L T +ER + + VIL SH+ E
Sbjct: 288 GLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE 345
Score = 45.2 bits (105), Expect = 1e-05
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAI 336
S +ILDEPT +D RR + ++ + VIL +H + D D +
Sbjct: 302 EISLLILDEPTPYLDEERRRKLITIMERY-----LKKIPQVILVSHDEELKD-AADHVIR 355
Query: 337 I 337
I
Sbjct: 356 I 356
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 52.1 bits (123), Expect = 8e-08
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 442 AIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 491
++ L G L+ LDEPT +D RR L T +ER + + VIL SH+ E
Sbjct: 219 SLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE 268
Score = 47.8 bits (112), Expect = 1e-06
Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Query: 262 SILVAVTVLFAMSFVPASTV-ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILT 320
++ +A + ++ ++ ILDEPT +D RR + ++ + VIL
Sbjct: 209 ALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERY-----LKKIPQVILV 263
Query: 321 THYMDEADLLGDRIAII 337
+H + D D + I
Sbjct: 264 SHDEELKD-AADHVIRI 279
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 41.2 bits (95), Expect = 3e-04
Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 9/91 (9%)
Query: 244 MNLTHKQMALETLKKAGTSILVAVTVLFAMSFV-PASTVILDEPTSGVDPYSRRSIWELL 302
K+ G + A+ +LFA++ P+ +LDE + +D + + I +
Sbjct: 320 ATPPLKRFKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYI 379
Query: 303 IKVYYASHSLSGRTVILTTH---YMDEADLL 330
+ H I+ + +++D L
Sbjct: 380 RR-----HRNPDLQFIVISLKNTMFEKSDAL 405
Score = 40.5 bits (93), Expect = 4e-04
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 439 LSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN---MEECEA 495
L AI +P LDE + +D + + I R + I+ S E+ +A
Sbjct: 345 LLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDA 404
Query: 496 L 496
L
Sbjct: 405 L 405
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 32.3 bits (72), Expect = 0.11
Identities = 10/61 (16%), Positives = 15/61 (24%), Gaps = 7/61 (11%)
Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGK 341
I+DE + I V+ T D L+ I +
Sbjct: 104 IIDEIGKMELFSKKFRDLVRQIMHDP------NVNVVATIPIRDVHPLV-KEIRRLPGAV 156
Query: 342 L 342
L
Sbjct: 157 L 157
>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas
vaginalis, MGL2 [TaxId: 5722]}
Length = 331
Score = 31.0 bits (69), Expect = 0.39
Identities = 24/178 (13%), Positives = 50/178 (28%), Gaps = 11/178 (6%)
Query: 83 GITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDK 142
G+ + +H+ + ++ L S T + ++A
Sbjct: 135 GVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITG----AIISPHDAWLIT 190
Query: 143 LTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWF 202
+ + + +A+ + Q K+ + F
Sbjct: 191 RGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAF 250
Query: 203 NNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAG 260
+ A ++ + V L SL S I HP ++TH + E + AG
Sbjct: 251 DVDGLEKAKKVLDNCHVVSLAVSLGGPESL-------IQHPASMTHAGVPKEEREAAG 301
>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB)
{Streptomyces venezuelae [TaxId: 54571]}
Length = 322
Score = 29.8 bits (66), Expect = 0.84
Identities = 17/101 (16%), Positives = 37/101 (36%), Gaps = 4/101 (3%)
Query: 245 NLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSR-RSIWELLI 303
N+ Q L+ AG +V V+ + + + P PY+ ++ +L+
Sbjct: 103 NVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDSGSWTESSPLEPNSPYAASKAGSDLVA 162
Query: 304 KVYYASHSLSGRTVILTTHY---MDEADLLGDRIAIIAAGK 341
+ Y+ ++ L R +Y L+ + + G
Sbjct: 163 RAYHRTYGLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGG 203
>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 221
Score = 27.9 bits (61), Expect = 2.8
Identities = 19/114 (16%), Positives = 31/114 (27%), Gaps = 19/114 (16%)
Query: 139 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNV 198
+ + K A + G PH+R LS L+ +
Sbjct: 108 IIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPHERVPNTKDLS------LNKL 161
Query: 199 KVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMA 252
+ ++K I F N I YA+ + LT +A
Sbjct: 162 GIQTDDKGHIIVDEFQNTNVKGI-------------YAVGDVCGKALLTPVAIA 202
>d1vpqa_ c.1.32.1 (A:) Hypothetical protein TM1631 {Thermotoga
maritima [TaxId: 2336]}
Length = 260
Score = 27.3 bits (60), Expect = 5.9
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 385 DRLTPREHLEFYSRVRNLPSVLLNT 409
+ L P + L++Y V V LN
Sbjct: 22 EHLKPSQFLKYYWAVLGFRIVELNF 46
>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus
[TaxId: 274]}
Length = 351
Score = 27.4 bits (59), Expect = 6.0
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 447 GNTPLIFLDEPTSGMDPGARRFL 469
G+TPLI L P G R +
Sbjct: 27 GSTPLIPLKGPEEARKKGIRLYA 49
>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 380
Score = 27.1 bits (59), Expect = 7.4
Identities = 18/124 (14%), Positives = 31/124 (25%), Gaps = 18/124 (14%)
Query: 137 NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLD 196
AL + E L P+ ++ G P Q K
Sbjct: 244 MALRIEKQQENARKIAMYLSSHPR----VKKVYYAGLPDHPGHHLH-------FSQAKGA 292
Query: 197 NVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETL 256
F + + + + S S S I+ P ++H + E
Sbjct: 293 GSVFSFITGSVALSKHLVETTKYFSIAVSFGSVKS-------LISMPCFMSHASIPAEVR 345
Query: 257 KKAG 260
+ G
Sbjct: 346 EARG 349
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.133 0.386
Gapped
Lambda K H
0.267 0.0367 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,097,376
Number of extensions: 94933
Number of successful extensions: 377
Number of sequences better than 10.0: 1
Number of HSP's gapped: 327
Number of HSP's successfully gapped: 72
Length of query: 601
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 511
Effective length of database: 1,171,896
Effective search space: 598838856
Effective search space used: 598838856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.3 bits)