BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7366
(566 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/210 (35%), Positives = 108/210 (51%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL 416
G K + ISF + GE FGL+G NGAGKTTT ++++ IKP+SG V ++ +
Sbjct: 26 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHE 85
Query: 417 VRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVR 476
VR I Y P+ + E+L F + S + +V + LG V
Sbjct: 86 VRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVS 145
Query: 477 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 536
T S G RKL A AL+ NP L LDEPTSG+D R + +++A EG ++++SHN
Sbjct: 146 TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHN 205
Query: 537 MEECEALCTKLTIMVNGQFTCLGSATHLKS 566
M E E LC ++ ++ NG G+ LK
Sbjct: 206 MLEVEFLCDRIALIHNGTIVETGTVEELKE 235
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 72/150 (48%)
Query: 34 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 93
I Y P+ + E+L F + S + +V + LG V T S
Sbjct: 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSK 149
Query: 94 GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC 153
G RKL A AL+ NP L LDEPTSG+D R + +++A EG ++++SHNM E
Sbjct: 150 GMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEV 209
Query: 154 EALCTKLTIMVNGQFTCLGSATHLKSKSMA 183
E LC ++ ++ NG G+ LK + A
Sbjct: 210 EFLCDRIALIHNGTIVETGTVEELKERYKA 239
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 107/216 (49%), Gaps = 5/216 (2%)
Query: 350 KIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 409
KIY G +V +SF + GE GLLG +G+GKTT +++ G +PT G+ ++
Sbjct: 22 KIYP---GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKR 78
Query: 410 IRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH 469
+ D R+ +G Q AL +T +++ F R + VP ++ V E L L
Sbjct: 79 VTDLPPQKRN-VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLES 137
Query: 470 YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GR 528
Y++R LSGG +++++ A AL P ++ DEP + +D RR L T + + E G
Sbjct: 138 YANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGV 197
Query: 529 CVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
+ +H+ EE + ++ ++ G G+ +
Sbjct: 198 TSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEV 233
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 1/155 (0%)
Query: 34 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 93
+G Q AL +T +++ F R + VP ++ V E L L Y++R LSG
Sbjct: 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSG 148
Query: 94 GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEE 152
G +++++ A AL P ++ DEP + +D RR L T + + E G + +H+ EE
Sbjct: 149 GQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEE 208
Query: 153 CEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVS 187
+ ++ ++ G G+ + K L V+
Sbjct: 209 ALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLFVA 243
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 99/209 (47%), Gaps = 2/209 (0%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL 416
G AV+ +SF V GE LLG +G GKTTT ML G KPTSG Y + + D
Sbjct: 14 GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK 73
Query: 417 VRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVR 476
R +G Q AL +T E++ F R R + + V E K + + DR+
Sbjct: 74 YRE-VGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPT 132
Query: 477 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSH 535
LSGG +++++ A AL+ P ++ DEP S +D R + I+ E G + +H
Sbjct: 133 QLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTH 192
Query: 536 NMEECEALCTKLTIMVNGQFTCLGSATHL 564
+ E + +++ + G+ G+ +
Sbjct: 193 DQAEAMTMASRIAVFNQGKLVQYGTPDEV 221
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 66/145 (45%), Gaps = 1/145 (0%)
Query: 34 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 93
+G Q AL +T E++ F R R + + V E K + + DR+ LSG
Sbjct: 77 VGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSG 136
Query: 94 GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEE 152
G +++++ A AL+ P ++ DEP S +D R + I+ E G + +H+ E
Sbjct: 137 GQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAE 196
Query: 153 CEALCTKLTIMVNGQFTCLGSATHL 177
+ +++ + G+ G+ +
Sbjct: 197 AMTMASRIAVFNQGKLVQYGTPDEV 221
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 104/219 (47%), Gaps = 8/219 (3%)
Query: 352 YANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI- 410
Y S GT A+ I+ + RGE +LG NG GK+T F+ G +KP+SG N I
Sbjct: 15 YNYSDGTH-ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPID 73
Query: 411 --RDSMDLVRSYIGYCPQFDALNDRLTPR--EHLEFYSRVRNVPSVLLNTIVNESLNKFA 466
R + +R IG Q D N + + + F + +P + V+ +L +
Sbjct: 74 YSRKGIMKLRESIGIVFQ-DPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTG 132
Query: 467 LGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP-GARRFLWTCIERAVS 525
+ H D+ LS G K++++ A L+ P ++ LDEPT+G+DP G + +E
Sbjct: 133 IEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKE 192
Query: 526 EGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
G +I+ +H+++ C + +M G+ G+ +
Sbjct: 193 LGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 231
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Query: 71 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP-GARRFL 129
V+ +L + + H D+ LS G K++++ A L+ P ++ LDEPT+G+DP G +
Sbjct: 124 VDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIM 183
Query: 130 WTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 177
+E G +I+ +H+++ C + +M G+ G+ +
Sbjct: 184 KLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 231
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 111/227 (48%), Gaps = 7/227 (3%)
Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
++VK + K++ KG A++ ++ + GE FG+LG +GAGKTT +++ G P++G
Sbjct: 4 IIVKNVSKVF--KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 403 AYVMNHSIRDSMDLV----RSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIV 458
Y + + + L+ IG Q AL LT E++ F + + V
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 459 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 518
E + H + R LSGG +++++ A AL+ +P L+ LDEP S +D R
Sbjct: 122 EEVAKILDIHHVLNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARA 181
Query: 519 CIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
++ S G +++ SH+ + A+ ++ ++V G+ +G L
Sbjct: 182 LVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 1/155 (0%)
Query: 34 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 93
IG Q AL LT E++ F + + V E + H + R LSG
Sbjct: 84 IGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSG 143
Query: 94 GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEE 152
G +++++ A AL+ +P L+ LDEP S +D R ++ S G +++ SH+ +
Sbjct: 144 GQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPAD 203
Query: 153 CEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVS 187
A+ ++ ++V G+ +G L +++ V+
Sbjct: 204 IFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVA 238
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 110/227 (48%), Gaps = 7/227 (3%)
Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
++VK + K++ KG A++ ++ + GE FG+LG +GAGKTT +++ G P++G
Sbjct: 4 IIVKNVSKVF--KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 403 AYVMNHSIRDSMDLV----RSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIV 458
Y + + + L+ IG Q AL LT E++ F + + V
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 459 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 518
E + H + R LSG +++++ A AL+ +P L+ LDEP S +D R
Sbjct: 122 EEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARA 181
Query: 519 CIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
++ S G +++ SH+ + A+ ++ ++V G+ +G L
Sbjct: 182 LVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 71/155 (45%), Gaps = 1/155 (0%)
Query: 34 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 93
IG Q AL LT E++ F + + V E + H + R LSG
Sbjct: 84 IGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSG 143
Query: 94 GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEE 152
+++++ A AL+ +P L+ LDEP S +D R ++ S G +++ SH+ +
Sbjct: 144 AQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPAD 203
Query: 153 CEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVS 187
A+ ++ ++V G+ +G L +++ V+
Sbjct: 204 IFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVA 238
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 94/201 (46%), Gaps = 2/201 (0%)
Query: 365 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYC 424
I+ + GE +G +G GK+T +M+ G TSG+ ++ + D+ R +G
Sbjct: 22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERG-VGMV 80
Query: 425 PQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKR 484
Q AL L+ E++ F ++ ++N VN+ L H DR+ + LSGG ++
Sbjct: 81 FQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQ 140
Query: 485 KLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEAL 543
+++ L+ P + LDEP S +D R + I R GR +I +H+ E L
Sbjct: 141 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTL 200
Query: 544 CTKLTIMVNGQFTCLGSATHL 564
K+ ++ G+ +G L
Sbjct: 201 ADKIVVLDAGRVAQVGKPLEL 221
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 67/145 (46%), Gaps = 1/145 (0%)
Query: 34 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 93
+G Q AL L+ E++ F ++ ++N VN+ L H DR+ + LSG
Sbjct: 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSG 136
Query: 94 GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEE 152
G +++++ L+ P + LDEP S +D R + I R GR +I +H+ E
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVE 196
Query: 153 CEALCTKLTIMVNGQFTCLGSATHL 177
L K+ ++ G+ +G L
Sbjct: 197 AMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 94/201 (46%), Gaps = 2/201 (0%)
Query: 365 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYC 424
I+ + GE +G +G GK+T +M+ G TSG+ ++ + D+ R +G
Sbjct: 22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERG-VGMV 80
Query: 425 PQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKR 484
Q AL L+ E++ F ++ ++N VN+ L H DR+ + LSGG ++
Sbjct: 81 FQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQ 140
Query: 485 KLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEAL 543
+++ L+ P + LDEP S +D R + I R GR +I +H+ E L
Sbjct: 141 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTL 200
Query: 544 CTKLTIMVNGQFTCLGSATHL 564
K+ ++ G+ +G L
Sbjct: 201 ADKIVVLDAGRVAQVGKPLEL 221
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 67/145 (46%), Gaps = 1/145 (0%)
Query: 34 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 93
+G Q AL L+ E++ F ++ ++N VN+ L H DR+ + LSG
Sbjct: 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSG 136
Query: 94 GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEE 152
G +++++ L+ P + LDEP S +D R + I R GR +I +H+ E
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVE 196
Query: 153 CEALCTKLTIMVNGQFTCLGSATHL 177
L K+ ++ G+ +G L
Sbjct: 197 AMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 94/201 (46%), Gaps = 2/201 (0%)
Query: 365 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYC 424
I+ + GE +G +G GK+T +M+ G TSG+ ++ + D+ R +G
Sbjct: 22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERG-VGMV 80
Query: 425 PQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKR 484
Q AL L+ E++ F ++ ++N VN+ L H DR+ + LSGG ++
Sbjct: 81 FQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQ 140
Query: 485 KLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEAL 543
+++ L+ P + LD+P S +D R + I R GR +I +H+ E L
Sbjct: 141 RVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTL 200
Query: 544 CTKLTIMVNGQFTCLGSATHL 564
K+ ++ G+ +G L
Sbjct: 201 ADKIVVLDAGRVAQVGKPLEL 221
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 1/145 (0%)
Query: 34 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 93
+G Q AL L+ E++ F ++ ++N VN+ L H DR+ + LSG
Sbjct: 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSG 136
Query: 94 GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEE 152
G +++++ L+ P + LD+P S +D R + I R GR +I +H+ E
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVE 196
Query: 153 CEALCTKLTIMVNGQFTCLGSATHL 177
L K+ ++ G+ +G L
Sbjct: 197 AMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 101/212 (47%), Gaps = 7/212 (3%)
Query: 350 KIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 409
K++ T A+N +S V G+ +G++G +GAGK+T + + +PT G+ V
Sbjct: 9 KVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQE 68
Query: 410 I----RDSMDLVRSYIGYCPQ-FDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNK 464
+ + R IG Q F+ L+ R T ++ + N P + V E L+
Sbjct: 69 LTTLSESELTKARRQIGMIFQHFNLLSSR-TVFGNVALPLELDNTPKDEVKRRVTELLSL 127
Query: 465 FALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV 524
LG D LSGG K++++ A AL NP ++ DE TS +DP R + ++
Sbjct: 128 VGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDIN 187
Query: 525 SE-GRCVILTSHNMEECEALCTKLTIMVNGQF 555
G ++L +H M+ + +C + ++ NG+
Sbjct: 188 RRLGLTILLITHEMDVVKRICDCVAVISNGEL 219
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Query: 61 NVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSG 120
N P + V E L+ LG D LSGG K++++ A AL NP ++ DE TS
Sbjct: 111 NTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSA 170
Query: 121 MDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQF 168
+DP R + ++ G ++L +H M+ + +C + ++ NG+
Sbjct: 171 LDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGEL 219
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 101/219 (46%), Gaps = 16/219 (7%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD---- 412
G AV ++S V GE LLG +G GKTTT +M+ G +P+ G Y+ + + D
Sbjct: 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKG 73
Query: 413 ------SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFA 466
D+ + Y AL +T +++ F ++R VP ++ V E
Sbjct: 74 IFVPPKDRDIAMVFQSY-----ALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLG 128
Query: 467 LGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE 526
L +R+ R LSGG +++++ A++ P + +DEP S +D R + +++ +
Sbjct: 129 LTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQ 188
Query: 527 -GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
G I +H+ E + ++ +M G +GS +
Sbjct: 189 LGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 77/165 (46%), Gaps = 4/165 (2%)
Query: 25 PTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYS 84
P D++++ + Q AL +T +++ F ++R VP ++ V E L
Sbjct: 77 PPKDRDIAMVF---QSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELL 133
Query: 85 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCV 143
+R+ R LSGG +++++ A++ P + +DEP S +D R + +++ + G
Sbjct: 134 NRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTT 193
Query: 144 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSG 188
I +H+ E + ++ +M G +GS + K V+G
Sbjct: 194 IYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFVAG 238
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 106/224 (47%), Gaps = 7/224 (3%)
Query: 338 DSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 397
D ++ + + K++ T A+N +S V G+ +G++G +GAGK+T + + +
Sbjct: 20 DDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER 79
Query: 398 PTSGNAYVMNHSI----RDSMDLVRSYIGYCPQ-FDALNDRLTPREHLEFYSRVRNVPSV 452
PT G+ V + + R IG Q F+ L+ R T ++ + N P
Sbjct: 80 PTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSR-TVFGNVALPLELDNTPKD 138
Query: 453 LLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGA 512
+ V E L+ LG D LSGG K++++ A AL NP ++ D+ TS +DP
Sbjct: 139 EVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPAT 198
Query: 513 RRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQF 555
R + ++ G ++L +H M+ + +C + ++ NG+
Sbjct: 199 TRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGEL 242
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Query: 61 NVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSG 120
N P + V E L+ LG D LSGG K++++ A AL NP ++ D+ TS
Sbjct: 134 NTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSA 193
Query: 121 MDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQF 168
+DP R + ++ G ++L +H M+ + +C + ++ NG+
Sbjct: 194 LDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGEL 242
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 98/205 (47%), Gaps = 2/205 (0%)
Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSY 420
A+N I+ + GE LLG +G+GK+T + G KPTSG Y + + R+
Sbjct: 18 ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRN- 76
Query: 421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 480
+G Q AL +T +++ F +R P ++ V E + +R LSG
Sbjct: 77 VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSG 136
Query: 481 GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEE 539
G +++++ A AL+ P ++ LDEP S +D R + ++R E G + +H+ E
Sbjct: 137 GQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAE 196
Query: 540 CEALCTKLTIMVNGQFTCLGSATHL 564
A+ ++ ++ G+ +G+ +
Sbjct: 197 ALAMADRIAVIREGEILQVGTPDEV 221
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 73/157 (46%), Gaps = 4/157 (2%)
Query: 25 PTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYS 84
P D+N +G Q AL +T +++ F +R P ++ V E +
Sbjct: 71 PPKDRN---VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLL 127
Query: 85 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCV 143
+R LSGG +++++ A AL+ P ++ LDEP S +D R + ++R E G
Sbjct: 128 NRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITT 187
Query: 144 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK 180
+ +H+ E A+ ++ ++ G+ +G+ + K
Sbjct: 188 VYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYK 224
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 102/207 (49%), Gaps = 9/207 (4%)
Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSY 420
+++ +S V GE F +LG GAGKT +++ G P SG + + D + +
Sbjct: 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTD-LSPEKHD 73
Query: 421 IGYCPQFDALNDRLTPREHLEFYSRVRNV--PSVLLNTIVNESLNKFALGHYSDREVRTL 478
I + Q +L + +++LEF R++ + P +L+T + H DR TL
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTA-----RDLKIEHLLDRNPLTL 128
Query: 479 SGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL-TSHNM 537
SGG +++++ A AL+ NP ++ LDEP S +DP + + + + +L +H+
Sbjct: 129 SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ 188
Query: 538 EECEALCTKLTIMVNGQFTCLGSATHL 564
E + ++ ++++G+ +G +
Sbjct: 189 TEARIMADRIAVVMDGKLIQVGKPEEI 215
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 77/158 (48%), Gaps = 12/158 (7%)
Query: 34 IGYCPQFDALNDRLTPREHLEFYSRVRNV--PSVLLNTIVNESLNKFALGHYSDREVRTL 91
I + Q +L + +++LEF R++ + P +L+T + H DR TL
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTA-----RDLKIEHLLDRNPLTL 128
Query: 92 SGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL-TSHNM 150
SGG +++++ A AL+ NP ++ LDEP S +DP + + + + +L +H+
Sbjct: 129 SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ 188
Query: 151 EECEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSG 188
E + ++ ++++G+ +G + K PV G
Sbjct: 189 TEARIMADRIAVVMDGKLIQVGKPEEIFEK----PVEG 222
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 100/205 (48%), Gaps = 2/205 (0%)
Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSY 420
AVN+++ + GE LLG +G GKTTT +M+ G +PT G Y + + R+
Sbjct: 27 AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRN- 85
Query: 421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 480
I Q A+ +T E++ F +++ P ++ V + + +R LSG
Sbjct: 86 ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSG 145
Query: 481 GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC-VILTSHNMEE 539
G +++++ A A++ P ++ +DEP S +D R + I++ + + I +H+ E
Sbjct: 146 GQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVE 205
Query: 540 CEALCTKLTIMVNGQFTCLGSATHL 564
+ ++ +M GQ +GS T +
Sbjct: 206 AMTMGDRIAVMNRGQLLQIGSPTEV 230
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 74/154 (48%), Gaps = 4/154 (2%)
Query: 25 PTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYS 84
P D+N+S + Q A+ +T E++ F +++ P ++ V + +
Sbjct: 80 PPKDRNISMVF---QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELL 136
Query: 85 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC-V 143
+R LSGG +++++ A A++ P ++ +DEP S +D R + I++ + +
Sbjct: 137 NRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTT 196
Query: 144 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 177
I +H+ E + ++ +M GQ +GS T +
Sbjct: 197 IYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 230
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 100/205 (48%), Gaps = 2/205 (0%)
Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSY 420
AVN+++ + GE LLG +G GKTTT +M+ G +PT G Y + + R+
Sbjct: 26 AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRN- 84
Query: 421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 480
I Q A+ +T E++ F +++ P ++ V + + +R LSG
Sbjct: 85 ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSG 144
Query: 481 GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC-VILTSHNMEE 539
G +++++ A A++ P ++ +DEP S +D R + I++ + + I +H+ E
Sbjct: 145 GQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVE 204
Query: 540 CEALCTKLTIMVNGQFTCLGSATHL 564
+ ++ +M GQ +GS T +
Sbjct: 205 AMTMGDRIAVMNRGQLLQIGSPTEV 229
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 74/154 (48%), Gaps = 4/154 (2%)
Query: 25 PTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYS 84
P D+N+S + Q A+ +T E++ F +++ P ++ V + +
Sbjct: 79 PPKDRNISMVF---QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELL 135
Query: 85 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC-V 143
+R LSGG +++++ A A++ P ++ +DEP S +D R + I++ + +
Sbjct: 136 NRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTT 195
Query: 144 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 177
I +H+ E + ++ +M GQ +GS T +
Sbjct: 196 IYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 229
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 97/199 (48%), Gaps = 6/199 (3%)
Query: 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 418
K A+ +S + GEC + G G+GK+T +++ G I+PTSG+ V+ R +R
Sbjct: 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGD--VLYDGERKKGYEIR 77
Query: 419 SYIGYCPQFDALNDRLTPREHLEFYSRVRNV-PSVLLNTIVNESLNKFALGH--YSDREV 475
IG Q+ + R E V+N P +V +++ L + DR
Sbjct: 78 RNIGIAFQYPE-DQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP 136
Query: 476 RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 535
LSGG KR+++ A ++ P ++ LDEP G+D + L +E+ + G+ VIL SH
Sbjct: 137 FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISH 196
Query: 536 NMEECEALCTKLTIMVNGQ 554
++E ++ ++ G+
Sbjct: 197 DIETVINHVDRVVVLEKGK 215
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%)
Query: 83 YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC 142
+ DR LSGG KR+++ A ++ P ++ LDEP G+D + L +E+ + G+
Sbjct: 131 FKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKT 190
Query: 143 VILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK 180
VIL SH++E ++ ++ G+ G+ K
Sbjct: 191 VILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 97/199 (48%), Gaps = 6/199 (3%)
Query: 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 418
K A+ +S + GEC + G G+GK+T +++ G I+PTSG+ V+ R +R
Sbjct: 22 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGD--VLYDGERKKGYEIR 79
Query: 419 SYIGYCPQFDALNDRLTPREHLEFYSRVRNV-PSVLLNTIVNESLNKFALGH--YSDREV 475
IG Q+ + R E V+N P +V +++ L + DR
Sbjct: 80 RNIGIAFQYPE-DQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP 138
Query: 476 RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 535
LSGG KR+++ A ++ P ++ LDEP G+D + L +E+ + G+ VIL SH
Sbjct: 139 FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISH 198
Query: 536 NMEECEALCTKLTIMVNGQ 554
++E ++ ++ G+
Sbjct: 199 DIETVINHVDRVVVLEKGK 217
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%)
Query: 83 YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC 142
+ DR LSGG KR+++ A ++ P ++ LDEP G+D + L +E+ + G+
Sbjct: 133 FKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKT 192
Query: 143 VILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK 180
VIL SH++E ++ ++ G+ G+ K
Sbjct: 193 VILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 230
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 97/207 (46%), Gaps = 13/207 (6%)
Query: 365 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYC 424
+ F +GR C LLG GAGK+ +++ G +KP G +N + + R IG+
Sbjct: 18 VDFEMGRDYCV-LLGPTGAGKSVFLELIAGIVKPDRGEVR-LNGADITPLPPERRGIGFV 75
Query: 425 PQFDALNDRLTPREHLEFYSRV----RNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 480
PQ AL HL Y + RNV V + V E K + H DR+ LSG
Sbjct: 76 PQDYALF------PHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSG 129
Query: 481 GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL-TSHNMEE 539
G +++++ A AL+ P L+ LDEP S +D + L + E IL +H++ E
Sbjct: 130 GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIE 189
Query: 540 CEALCTKLTIMVNGQFTCLGSATHLKS 566
L ++ +M+NG+ G L S
Sbjct: 190 AAMLADEVAVMLNGRIVEKGKLKELFS 216
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 70/151 (46%), Gaps = 11/151 (7%)
Query: 34 IGYCPQFDALNDRLTPREHLEFYSRV----RNVPSVLLNTIVNESLNKFALGHYSDREVR 89
IG+ PQ AL HL Y + RNV V + V E K + H DR+
Sbjct: 72 IGFVPQDYALF------PHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPA 125
Query: 90 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL-TSH 148
LSGG +++++ A AL+ P L+ LDEP S +D + L + E IL +H
Sbjct: 126 RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTH 185
Query: 149 NMEECEALCTKLTIMVNGQFTCLGSATHLKS 179
++ E L ++ +M+NG+ G L S
Sbjct: 186 DLIEAAMLADEVAVMLNGRIVEKGKLKELFS 216
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 104/224 (46%), Gaps = 7/224 (3%)
Query: 338 DSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 397
D + + + K++ T A+N +S V G+ +G++G +GAGK+T + + +
Sbjct: 20 DDKHXIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER 79
Query: 398 PTSGNAYVMNHSI----RDSMDLVRSYIGYCPQ-FDALNDRLTPREHLEFYSRVRNVPSV 452
PT G+ V + + R IG Q F+ L+ R T ++ + N P
Sbjct: 80 PTEGSVLVDGQELTTLSESELTKARRQIGXIFQHFNLLSSR-TVFGNVALPLELDNTPKD 138
Query: 453 LLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGA 512
+ V E L+ LG D LSGG K++++ A AL NP ++ D+ TS +DP
Sbjct: 139 EVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPAT 198
Query: 513 RRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQF 555
R + ++ G ++L +H + + +C + ++ NG+
Sbjct: 199 TRSILELLKDINRRLGLTILLITHEXDVVKRICDCVAVISNGEL 242
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Query: 61 NVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSG 120
N P + V E L+ LG D LSGG K++++ A AL NP ++ D+ TS
Sbjct: 134 NTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSA 193
Query: 121 MDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQF 168
+DP R + ++ G ++L +H + + +C + ++ NG+
Sbjct: 194 LDPATTRSILELLKDINRRLGLTILLITHEXDVVKRICDCVAVISNGEL 242
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 94/201 (46%), Gaps = 26/201 (12%)
Query: 363 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIG 422
Q++F + +G+ +LG NG GK+T +L G +P G V IG
Sbjct: 22 QQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQS------------IG 69
Query: 423 YCPQF-------DALNDRLTPRE-HLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDRE 474
+ PQF L+ L R H+ +++ P + ++L+ L H + RE
Sbjct: 70 FVPQFFSSPFAYSVLDIVLMGRSTHINTFAK----PKSHDYQVAMQALDYLNLTHLAKRE 125
Query: 475 VRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT-CIERAVSEGRCVILT 533
+LSGG ++ + A A+ LI LDEPTS +D + + + I+ A S+ V+ T
Sbjct: 126 FTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFT 185
Query: 534 SHNMEECEALCTKLTIMVNGQ 554
+H + A+ K T+++N Q
Sbjct: 186 THQPNQVVAIANK-TLLLNKQ 205
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 14/143 (9%)
Query: 34 IGYCPQF-------DALNDRLTPRE-HLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSD 85
IG+ PQF L+ L R H+ +++ P + ++L+ L H +
Sbjct: 68 IGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAK----PKSHDYQVAMQALDYLNLTHLAK 123
Query: 86 REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT-CIERAVSEGRCVI 144
RE +LSGG ++ + A A+ LI LDEPTS +D + + + I+ A S+ V+
Sbjct: 124 REFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVV 183
Query: 145 LTSHNMEECEALCTKLTIMVNGQ 167
T+H + A+ K T+++N Q
Sbjct: 184 FTTHQPNQVVAIANK-TLLLNKQ 205
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 96/216 (44%), Gaps = 10/216 (4%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL 416
G AV +S + GE LLG +G GKTTT + + G +PT G Y+ ++ + D
Sbjct: 17 GDVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKG 76
Query: 417 V-----RSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYS 471
V + Q AL T +++ F ++R VP ++ V E L
Sbjct: 77 VFVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELL 136
Query: 472 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR---RFLWTCIERAVSEGR 528
+R+ R LSGG +++++ A++ P + DEP S +D R R ++R + G
Sbjct: 137 NRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQL--GV 194
Query: 529 CVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
I +H+ E ++ + G+ +G+ +
Sbjct: 195 TTIYVTHDQVEAXTXGDRIAVXNKGELQQVGTPDEV 230
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 67/150 (44%), Gaps = 5/150 (3%)
Query: 42 ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLST 101
AL T +++ F ++R VP ++ V E L +R+ R LSGG +++++
Sbjct: 94 ALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELLNRKPRELSGGQRQRVAL 153
Query: 102 AIALLGNPPLIFLDEPTSGMDPGAR---RFLWTCIERAVSEGRCVILTSHNMEECEALCT 158
A++ P + DEP S +D R R ++R + G I +H+ E
Sbjct: 154 GRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQL--GVTTIYVTHDQVEAXTXGD 211
Query: 159 KLTIMVNGQFTCLGSATHLKSKSMALPVSG 188
++ + G+ +G+ + K + V+G
Sbjct: 212 RIAVXNKGELQQVGTPDEVYYKPVNTFVAG 241
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 104/250 (41%), Gaps = 45/250 (18%)
Query: 338 DSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 397
D+ ++L + + K + K A++ +S V +G+ ++G NG+GK+T ++TG +K
Sbjct: 3 DTMEILRTENIVKYFGEFK----ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK 58
Query: 398 PTSGNAYVMNHSIRDS-------MDLVRSY----------------IG-YCPQFDALN-- 431
G Y N I + +VR++ IG CP LN
Sbjct: 59 ADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSL 118
Query: 432 --DRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTA 489
+ P+E E + + L L H DR+ LSGG + +
Sbjct: 119 FYKKWIPKEE-EMVEKAFKI------------LEFLKLSHLYDRKAGELSGGQMKLVEIG 165
Query: 490 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTI 549
AL+ NP +I +DEP +G+ PG ++ + ++G ++ H ++ L +
Sbjct: 166 RALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYV 225
Query: 550 MVNGQFTCLG 559
M NGQ G
Sbjct: 226 MFNGQIIAEG 235
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%)
Query: 75 LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIE 134
L L H DR+ LSGG + + AL+ NP +I +DEP +G+ PG ++ +
Sbjct: 138 LEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL 197
Query: 135 RAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLG 172
++G ++ H ++ L +M NGQ G
Sbjct: 198 ELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 104/241 (43%), Gaps = 27/241 (11%)
Query: 338 DSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 397
D+ ++L + + K + K A++ +S V +G+ ++G NG+GK+T ++TG +K
Sbjct: 3 DTMEILRTENIVKYFGEFK----ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK 58
Query: 398 PTSGNAYVMNHSIRDS-------MDLVRSYIGYCPQ------------FDALNDRLTPRE 438
G Y N I + +VR++ PQ +N +P
Sbjct: 59 ADEGRVYFENKDITNKEPAELYHYGIVRTF--QTPQPLKEMTVLENLLIGEINPGESPLN 116
Query: 439 HLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPL 498
L FY + ++ + L L H DR+ LSGG + + AL+ NP +
Sbjct: 117 SL-FYKKWIPKEEEMVEKAF-KILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKM 174
Query: 499 IFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCL 558
I +D+P +G+ PG ++ + ++G ++ H ++ L +M NGQ
Sbjct: 175 IVMDQPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAE 234
Query: 559 G 559
G
Sbjct: 235 G 235
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 46/98 (46%)
Query: 75 LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIE 134
L L H DR+ LSGG + + AL+ NP +I +D+P +G+ PG ++ +
Sbjct: 138 LEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVL 197
Query: 135 RAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLG 172
++G ++ H ++ L +M NGQ G
Sbjct: 198 ELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 104/241 (43%), Gaps = 27/241 (11%)
Query: 338 DSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 397
D+ ++L + + K + K A++ +S V +G+ ++G NG+GK+T ++TG +K
Sbjct: 3 DTMEILRTENIVKYFGEFK----ALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLK 58
Query: 398 PTSGNAYVMNHSIRDS-------MDLVRSYIGYCPQ------------FDALNDRLTPRE 438
G Y N I + +VR++ PQ +N +P
Sbjct: 59 ADEGRVYFENKDITNKEPAELYHYGIVRTF--QTPQPLKEMTVLENLLIGEINPGESPLN 116
Query: 439 HLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPL 498
L FY + ++ + L L H DR+ LSGG + + AL+ NP +
Sbjct: 117 SL-FYKKWIPKEEEMVEKAF-KILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKM 174
Query: 499 IFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCL 558
I +DEP +G+ PG ++ + ++G ++ H ++ L +M NGQ
Sbjct: 175 IVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAE 234
Query: 559 G 559
G
Sbjct: 235 G 235
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%)
Query: 75 LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIE 134
L L H DR+ LSGG + + AL+ NP +I +DEP +G+ PG ++ +
Sbjct: 138 LEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL 197
Query: 135 RAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLG 172
++G ++ H ++ L +M NGQ G
Sbjct: 198 ELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 96/203 (47%), Gaps = 35/203 (17%)
Query: 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS--MDL 416
KPA++ +SF + +G+ L+G +G+GK+T + T SG+ + H +RD +L
Sbjct: 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNL 415
Query: 417 VRSYIGYCPQFDALNDRLT-----------PREHLEFYSR-------VRNVPSVLLNTIV 458
R + ND + RE +E +R + N+P L+T++
Sbjct: 416 RRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQG-LDTVI 474
Query: 459 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 518
E+ +LSGG +++++ A ALL + P++ LDE TS +D + R +
Sbjct: 475 GENGT-------------SLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQA 521
Query: 519 CIERAVSEGRCVILTSHNMEECE 541
++ + + + V++ +H + E
Sbjct: 522 ALDE-LQKNKTVLVIAHRLSTIE 543
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 19/141 (13%)
Query: 15 LTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREH-LEFYSRVRNVPSVLLNTIVNE 73
L +Q V N TI N++Y ++ + H +EF + N+P L +T++ E
Sbjct: 421 LVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEF---IENMPQGL-DTVIGE 476
Query: 74 SLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCI 133
+ +LSGG +++++ A ALL + P++ LDE TS +D + R + +
Sbjct: 477 NGT-------------SLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAAL 523
Query: 134 ERAVSEGRCVILTSHNMEECE 154
+ + + + V++ +H + E
Sbjct: 524 DE-LQKNKTVLVIAHRLSTIE 543
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 100/222 (45%), Gaps = 31/222 (13%)
Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD-LVR 418
P + I+ + +GE +G++G GK+T ++ TSG + H+I+D + +R
Sbjct: 355 PILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 414
Query: 419 SYIGYCPQFDAL-NDRL-----------TPREHLEFYSRVRNVPSVLLNTIVNESLNKFA 466
+ IG Q + L +D + T E +E +++ N ++N
Sbjct: 415 NQIGLVQQDNILFSDTVKENILLGRPTATDEEVVE-AAKMANAHDFIMN----------- 462
Query: 467 LGHYSDREV----RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 522
L D EV LSGG K++LS A L NPP++ LDE TS +D + + ++
Sbjct: 463 LPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALD- 521
Query: 523 AVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
+S+ R ++ +H + K+ ++ NG G+ L
Sbjct: 522 VLSKDRTTLIVAHRLSTITH-ADKIVVIENGHIVETGTHREL 562
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
LSGG K++LS A L NPP++ LDE TS +D + + ++ +S+ R ++ +H +
Sbjct: 478 LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALD-VLSKDRTTLIVAHRL 536
Query: 151 EECEALCTKLTIMVNGQFTCLGSATHLKSKSMA 183
K+ ++ NG G+ L +K A
Sbjct: 537 STITH-ADKIVVIENGHIVETGTHRELIAKQGA 568
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 93/192 (48%), Gaps = 9/192 (4%)
Query: 372 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALN 431
G+ + ++G NG+GKTT K+L G + + ++ S D L+R +GY F +
Sbjct: 37 GKIYVVVGKNGSGKTTLLKILAGLL--AAAGEIFLDGSPADPF-LLRKNVGYV--FQNPS 91
Query: 432 DRL---TPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLST 488
++ T E + F + + + + + L L + + LSGG K++L+
Sbjct: 92 SQIIGATVEEDVAFSLEIMGLDESEMRKRIKKVLELVGLSGLAAADPLNLSGGQKQRLAI 151
Query: 489 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLT 548
A L + + LDEP S +DP ++R ++ +E +EG+ +IL +H +E + + L
Sbjct: 152 ASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTHELEYLDDMDFILH 211
Query: 549 IMVNGQFTCLGS 560
I NG GS
Sbjct: 212 IS-NGTIDFCGS 222
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 78/177 (44%), Gaps = 8/177 (4%)
Query: 2 GLTTTPKRVVTLLLTTQKV-----PGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFY 56
G TT K + LL ++ P + KN+ Y+ P + T E + F
Sbjct: 49 GKTTLLKILAGLLAAAGEIFLDGSPADPFLLRKNVGYVFQNPSSQIIG--ATVEEDVAFS 106
Query: 57 SRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDE 116
+ + + + + L L + + LSGG K++L+ A L + + LDE
Sbjct: 107 LEIMGLDESEMRKRIKKVLELVGLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDE 166
Query: 117 PTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 173
P S +DP ++R ++ +E +EG+ +IL +H +E + + L I NG GS
Sbjct: 167 PVSMLDPPSQREIFQVLESLKNEGKGIILVTHELEYLDDMDFILHIS-NGTIDFCGS 222
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 94/210 (44%), Gaps = 24/210 (11%)
Query: 345 VKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 404
+K + K Y + A+ ++ + GE + G +G+GK+T ++ KPT G Y
Sbjct: 4 LKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVY 63
Query: 405 VMNHSIRDSMD-----LVRSYIGYCPQFDALNDRLTPREHLEF--YSRVRNVPSVLLNTI 457
+ N D D + R IG+ Q L LT E++E + R S
Sbjct: 64 IDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXS------ 117
Query: 458 VNESLNKFALG---------HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGM 508
E K AL +++ + LSGG +++++ A AL NPP+I DEPT +
Sbjct: 118 -GEERRKRALECLKXAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGAL 176
Query: 509 DPGARRFLWTCIERAVSE-GRCVILTSHNM 537
D + +++ E G+ V++ +H++
Sbjct: 177 DSKTGEKIXQLLKKLNEEDGKTVVVVTHDI 206
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 82 HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-G 140
+++ + LSGG +++++ A AL NPP+I DEPT +D + +++ E G
Sbjct: 137 RFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDG 196
Query: 141 RCVILTSHNM 150
+ V++ +H++
Sbjct: 197 KTVVVVTHDI 206
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 97/209 (46%), Gaps = 26/209 (12%)
Query: 345 VKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 404
+K++ + Y KG IS V +GE ++G +G+GK+T +L PT G +
Sbjct: 10 IKKVIRGYEILKG-------ISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVF 62
Query: 405 V----MNHSIRDSMDLVRS-YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVN 459
+ ++++ + L+R+ +G+ QF L LT E++ VP + +
Sbjct: 63 LEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENV-------IVPMLKMGKPKK 115
Query: 460 ES-------LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGA 512
E+ L++ LG R+ LSGG +++++ A AL P L+F DEPT +D
Sbjct: 116 EAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSAN 175
Query: 513 RRFLWTCIERAVSEGRCVILTSHNMEECE 541
+ + + G +++ +H E E
Sbjct: 176 TKRVMDIFLKINEGGTSIVMVTHERELAE 204
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 14/128 (10%)
Query: 34 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNES-------LNKFALGHYSDR 86
+G+ QF L LT E++ VP + + E+ L++ LG R
Sbjct: 84 LGFVFQFHYLIPELTALENV-------IVPMLKMGKPKKEAKERGEYLLSELGLGDKLSR 136
Query: 87 EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILT 146
+ LSGG +++++ A AL P L+F DEPT +D + + + G +++
Sbjct: 137 KPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMV 196
Query: 147 SHNMEECE 154
+H E E
Sbjct: 197 THERELAE 204
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 98/213 (46%), Gaps = 24/213 (11%)
Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
++ +K + K Y + A+ ++ + GE ++G +G+GK+T ++ KPT G
Sbjct: 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60
Query: 402 NAYVMNHSIRDSMD-----LVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLL-- 454
Y+ N D D + R IG+ Q L LT E++E +P +
Sbjct: 61 EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVE-------LPLIFKYR 113
Query: 455 NTIVNESLNKFALG---------HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPT 505
+ E K AL +++ + LSGG +++++ A AL NPP+I D+PT
Sbjct: 114 GAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPT 173
Query: 506 SGMDPGARRFLWTCIERAVSE-GRCVILTSHNM 537
+D + +++ E G+ V++ +H++
Sbjct: 174 GALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI 206
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 82 HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-G 140
+++ + LSGG +++++ A AL NPP+I D+PT +D + +++ E G
Sbjct: 137 RFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDG 196
Query: 141 RCVILTSHNM 150
+ V++ +H++
Sbjct: 197 KTVVVVTHDI 206
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 103/219 (47%), Gaps = 23/219 (10%)
Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVR 418
P + +S V +G+ L+G +G GK+T ++L P +G+ ++ I+ ++ +R
Sbjct: 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLR 1106
Query: 419 SYIGYCPQ----FD---------ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKF 465
+ +G Q FD N R+ E + VR ++ ++ +K+
Sbjct: 1107 AQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEI-----VRAAKEANIHQFIDSLPDKY 1161
Query: 466 ALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS 525
D+ + LSGG K++++ A AL+ P ++ LDE TS +D + + + +++A
Sbjct: 1162 NT-RVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-R 1218
Query: 526 EGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
EGR I+ +H + + + ++ NG+ G+ L
Sbjct: 1219 EGRTCIVIAHRLSTIQN-ADLIVVIQNGKVKEHGTHQQL 1256
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 85/178 (47%), Gaps = 14/178 (7%)
Query: 369 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSYIGYCPQF 427
V G+ L+G +G GK+TT +++ P G + IR ++ +R IG Q
Sbjct: 413 VKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQE 472
Query: 428 DALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKF----ALGHYSDREV----RTLS 479
L T E++ Y R +V + V E+ N + L H D V LS
Sbjct: 473 PVLF-ATTIAENIR-YGR-EDVTMDEIEKAVKEA-NAYDFIMKLPHQFDTLVGERGAQLS 528
Query: 480 GGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 537
GG K++++ A AL+ NP ++ LDE TS +D + + +++A EGR I+ +H +
Sbjct: 529 GGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKA-REGRTTIVIAHRL 585
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
LSGG K++++ A AL+ NP ++ LDE TS +D + + +++A EGR I+ +H +
Sbjct: 527 LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKA-REGRTTIVIAHRL 585
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
LSGG K++++ A AL+ P ++ LDE TS +D + + + +++A EGR I+ +H +
Sbjct: 1172 LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRL 1230
Query: 151 EECEALCTKLTIMVNGQFTCLGSATHLKSK 180
+ + ++ NG+ G+ L ++
Sbjct: 1231 STIQN-ADLIVVIQNGKVKEHGTHQQLLAQ 1259
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 103/219 (47%), Gaps = 23/219 (10%)
Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVR 418
P + +S V +G+ L+G +G GK+T ++L P +G+ ++ I+ ++ +R
Sbjct: 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLR 1106
Query: 419 SYIGYCPQ----FD---------ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKF 465
+ +G Q FD N R+ E + VR ++ ++ +K+
Sbjct: 1107 AQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEI-----VRAAKEANIHQFIDSLPDKY 1161
Query: 466 ALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS 525
D+ + LSGG K++++ A AL+ P ++ LDE TS +D + + + +++A
Sbjct: 1162 NT-RVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-R 1218
Query: 526 EGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
EGR I+ +H + + + ++ NG+ G+ L
Sbjct: 1219 EGRTCIVIAHRLSTIQN-ADLIVVIQNGKVKEHGTHQQL 1256
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 85/178 (47%), Gaps = 14/178 (7%)
Query: 369 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSYIGYCPQF 427
V G+ L+G +G GK+TT +++ P G + IR ++ +R IG Q
Sbjct: 413 VKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQE 472
Query: 428 DALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKF----ALGHYSDREV----RTLS 479
L T E++ Y R +V + V E+ N + L H D V LS
Sbjct: 473 PVLF-ATTIAENIR-YGR-EDVTMDEIEKAVKEA-NAYDFIMKLPHQFDTLVGERGAQLS 528
Query: 480 GGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 537
GG K++++ A AL+ NP ++ LDE TS +D + + +++A EGR I+ +H +
Sbjct: 529 GGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKA-REGRTTIVIAHRL 585
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
LSGG K++++ A AL+ NP ++ LDE TS +D + + +++A EGR I+ +H +
Sbjct: 527 LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKA-REGRTTIVIAHRL 585
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
LSGG K++++ A AL+ P ++ LDE TS +D + + + +++A EGR I+ +H +
Sbjct: 1172 LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRL 1230
Query: 151 EECEALCTKLTIMVNGQFTCLGSATHLKSK 180
+ + ++ NG+ G+ L ++
Sbjct: 1231 STIQN-ADLIVVIQNGKVKEHGTHQQLLAQ 1259
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 96/210 (45%), Gaps = 24/210 (11%)
Query: 345 VKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 404
+K + K Y + A+ ++ + GE ++G +G+GK+T ++ KPT G Y
Sbjct: 4 LKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVY 63
Query: 405 VMNHSIRDSMD-----LVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVL--LNTI 457
+ N D D + R IG+ Q L LT E++E +P + +
Sbjct: 64 IDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVE-------LPLIFKYRGAM 116
Query: 458 VNESLNKFAL---------GHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGM 508
E K AL +++ + LSGG +++++ A AL NPP+I D+PT +
Sbjct: 117 SGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWAL 176
Query: 509 DPGARRFLWTCIERAVSE-GRCVILTSHNM 537
D + +++ E G+ V++ +H++
Sbjct: 177 DSKTGEKIMQLLKKLNEEDGKTVVVVTHDI 206
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 82 HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-G 140
+++ + LSGG +++++ A AL NPP+I D+PT +D + +++ E G
Sbjct: 137 RFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDG 196
Query: 141 RCVILTSHNM 150
+ V++ +H++
Sbjct: 197 KTVVVVTHDI 206
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 101/230 (43%), Gaps = 31/230 (13%)
Query: 356 KGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH---SIRD 412
K K + +IS+ + +G+ + L GLNGAGKTT +L TSG + +
Sbjct: 31 KQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGY 90
Query: 413 SMDLVRSYIGYCPQFDALNDRLTPREHL----------------EFYSRVRNVPSVLLNT 456
S + VR +IG+ +L ++ E + + +RN LL
Sbjct: 91 SAETVRQHIGFVSH--SLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKL 148
Query: 457 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 516
+ + + +G+ LS G K+++ A AL G P ++ LDEP +G+D AR L
Sbjct: 149 VGXSAKAQQYIGY--------LSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESL 200
Query: 517 WTCIERAVSE--GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
+ ++ I +H +EE A +K+ ++ +GQ G+ +
Sbjct: 201 LSILDSLSDSYPTLAXIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDI 250
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE--GRCVILTSH 148
LS G K+++ A AL G P ++ LDEP +G+D AR L + ++ I +H
Sbjct: 162 LSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAXIYVTH 221
Query: 149 NMEECEALCTKLTIMVNGQFTCLGSATHL 177
+EE A +K+ ++ +GQ G+ +
Sbjct: 222 FIEEITANFSKILLLKDGQSIQQGAVEDI 250
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 96/234 (41%), Gaps = 24/234 (10%)
Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
VL V+ L Y G A+ I V RG+ L+G NGAGKTTT + G ++ G
Sbjct: 6 VLEVQSLHVYY----GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKG 61
Query: 402 NAYVMNHSIRDSMDLV--RSYIGYCPQFDALNDRLTPREHLEF--YSR------VRNVPS 451
I + V R I P+ + LT E+L Y+R R++
Sbjct: 62 KIIFNGQDITNKPAHVINRXGIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRDLEW 121
Query: 452 VL-LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP 510
+ L + E L + TLSGG ++ L+ AL P L+ DEP+ G+ P
Sbjct: 122 IFSLFPRLKERLKQLG---------GTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAP 172
Query: 511 GARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
++ I++ EG ++L N + ++ GQ G A+ L
Sbjct: 173 ILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASEL 226
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%)
Query: 90 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 149
TLSGG ++ L+ AL P L+ DEP+ G+ P ++ I++ EG ++L N
Sbjct: 139 TLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQN 198
Query: 150 MEECEALCTKLTIMVNGQFTCLGSATHL 177
+ ++ GQ G A+ L
Sbjct: 199 ALGALKVAHYGYVLETGQIVLEGKASEL 226
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 97/228 (42%), Gaps = 36/228 (15%)
Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL-VR 418
P S + G L+G +G+GK+T +L P SG + H IR + +R
Sbjct: 389 PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLR 448
Query: 419 SYIGYCPQ--------------FDALNDRLTPREHLEFYSRVRNVPSVL------LNTIV 458
S IG Q + A + E ++ + V N + + NT+V
Sbjct: 449 SKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVV 508
Query: 459 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 518
E K L LSGG K++++ A ALL NP ++ LDE TS +D +
Sbjct: 509 GE---KGVL----------LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQE 555
Query: 519 CIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
++R + +GR V++ +H++ + + ++ G+ T G L S
Sbjct: 556 ALDR-LMDGRTVLVIAHHLSTIKN-ANMVAVLDQGKITEYGKHEELLS 601
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
LSGG K++++ A ALL NP ++ LDE TS +D + ++R + +GR V++ +H++
Sbjct: 515 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDR-LMDGRTVLVIAHHL 573
Query: 151 EECEALCTKLTIMVNGQFTCLGSATHLKSK 180
+ + ++ G+ T G L SK
Sbjct: 574 STIKN-ANMVAVLDQGKITEYGKHEELLSK 602
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 96/228 (42%), Gaps = 36/228 (15%)
Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL-VR 418
P S + G L+G +G+GK+T +L P SG + H IR + +R
Sbjct: 358 PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLR 417
Query: 419 SYIGYCPQ--------------FDALNDRLTPREHLEFYSRVRNVPSVL------LNTIV 458
S IG Q + A + E ++ + V N + + NT+V
Sbjct: 418 SKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVV 477
Query: 459 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 518
E K L LSGG K++++ A ALL NP ++ LDE TS +D +
Sbjct: 478 GE---KGVL----------LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQE 524
Query: 519 CIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
++R + +GR V++ +H + + + ++ G+ T G L S
Sbjct: 525 ALDR-LMDGRTVLVIAHRLSTIKN-ANMVAVLDQGKITEYGKHEELLS 570
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
LSGG K++++ A ALL NP ++ LDE TS +D + ++R + +GR V++ +H +
Sbjct: 484 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDR-LMDGRTVLVIAHRL 542
Query: 151 EECEALCTKLTIMVNGQFTCLGSATHLKSK 180
+ + ++ G+ T G L SK
Sbjct: 543 STIKN-ANMVAVLDQGKITEYGKHEELLSK 571
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 91/199 (45%), Gaps = 28/199 (14%)
Query: 369 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPT-SGNAYVMNHSIRDSMD-LVRSYIGYCPQ 426
V G G++G NG GK+T K+L G + P G+ DS D ++R++ G Q
Sbjct: 44 VKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGD--------NDSWDGVIRAFRGNELQ 95
Query: 427 --FDAL-NDRLTPREHLEFYSRVRNVPSVLLNTIVN------------ESLNKFALGHYS 471
F+ L N + P ++ V +P + ++ E + L +
Sbjct: 96 NYFEKLKNGEIRPVVKPQY---VDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVL 152
Query: 472 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 531
+RE++ LSGG ++++ A ALL N F DEP+S +D R I R EG+ V+
Sbjct: 153 EREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVL 212
Query: 532 LTSHNMEECEALCTKLTIM 550
+ H++ + L + ++
Sbjct: 213 VVEHDLAVLDYLSDIIHVV 231
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 80/185 (43%), Gaps = 21/185 (11%)
Query: 369 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFD 428
+ +GE G++G NG GKTT K L G +PT G DL + Y PQ+
Sbjct: 309 IKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKI---------EWDLT---VAYKPQYI 356
Query: 429 ALNDRLTPREHLEFYSRVRNVPSVLLNT--IVNESLNKFALGHYSDREVRTLSGGNKRKL 486
+ T Y + + + LN+ E L + DREV LSGG +++
Sbjct: 357 KADYEGT------VYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRV 410
Query: 487 STAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEG-RCVILTSHNMEECEALCT 545
+ A LL + + LDEP++ +D R + I + + ++ H++ + +
Sbjct: 411 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEHDVLXIDYVSD 470
Query: 546 KLTIM 550
+L +
Sbjct: 471 RLXVF 475
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 48/93 (51%)
Query: 71 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 130
+ E + L + +RE++ LSGG ++++ A ALL N F DEP+S +D R
Sbjct: 139 LEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAA 198
Query: 131 TCIERAVSEGRCVILTSHNMEECEALCTKLTIM 163
I R EG+ V++ H++ + L + ++
Sbjct: 199 RAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVV 231
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Query: 68 NTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARR 127
N E L + DREV LSGG ++++ A LL + + LDEP++ +D R
Sbjct: 379 NFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRL 438
Query: 128 FLWTCIERAVSEG-RCVILTSHNMEECEALCTKLTIM 163
+ I + + ++ H++ + + +L +
Sbjct: 439 AVSRAIRHLXEKNEKTALVVEHDVLXIDYVSDRLXVF 475
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 98/227 (43%), Gaps = 8/227 (3%)
Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
L + L K + N+ P +N IS + GE ++G +G GKTT + L G +P SG
Sbjct: 4 ALHIGHLSKSFQNT----PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSG 59
Query: 402 NAYVMNHSI---RDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIV 458
+ +I ++ + +GY Q L LT ++ + + +
Sbjct: 60 EISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRI 119
Query: 459 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 518
L + + R LSGG +++ + A AL +P LI LDEP S +D RR +
Sbjct: 120 EAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIRE 179
Query: 519 CIERAV-SEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
+ A+ + G+ + SH+ EE ++ +M G+ S L
Sbjct: 180 DMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHEL 226
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 86 REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV-SEGRCVI 144
R LSGG +++ + A AL +P LI LDEP S +D RR + + A+ + G+ +
Sbjct: 134 RYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAV 193
Query: 145 LTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 177
SH+ EE ++ +M G+ S L
Sbjct: 194 FVSHDREEALQYADRIAVMKQGRILQTASPHEL 226
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 101/222 (45%), Gaps = 31/222 (13%)
Query: 362 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR-DSMDLVRSY 420
++ I+ + +GE G++G +G+GK+T K++ P +G + H + + +R
Sbjct: 21 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 80
Query: 421 IGYCPQFDALNDRLTPREHLEFYSRVRNV----PSVLLNTIVNESLNKFALGHYSDREVR 476
+G Q + L +R S + N+ P + + ++ + K A H E+R
Sbjct: 81 VGVVLQDNVLLNR----------SIIDNISLANPGMSVEKVIYAA--KLAGAHDFISELR 128
Query: 477 T------------LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV 524
LSGG +++++ A AL+ NP ++ DE TS +D + + + + +
Sbjct: 129 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK-I 187
Query: 525 SEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
+GR VI+ +H + + ++ +M G+ G L S
Sbjct: 188 CKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKELLS 228
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
LSGG +++++ A AL+ NP ++ DE TS +D + + + + + +GR VI+ +H +
Sbjct: 142 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK-ICKGRTVIIIAHRL 200
Query: 151 EECEALCTKLTIMVNGQFTCLGSATHLKSKSMAL 184
+ ++ +M G+ G L S+ +L
Sbjct: 201 STVKN-ADRIIVMEKGKIVEQGKHKELLSEPESL 233
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 102/227 (44%), Gaps = 40/227 (17%)
Query: 358 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDL 416
++ + ISF G +G GK+T F +L +PT+G + I + S++
Sbjct: 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLEN 73
Query: 417 VRSYIGYCPQFDALNDRLTPREHLEF------------------YSR--VRNVPSVLLNT 456
RS IG+ Q A+ T RE+L + ++R V N+P LNT
Sbjct: 74 WRSQIGFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPD-QLNT 131
Query: 457 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 516
V E R V+ +SGG +++L+ A A L NP ++ LDE T+ +D + +
Sbjct: 132 EVGE------------RGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMV 178
Query: 517 WTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATH 563
++ ++ +GR ++ +H + K+ + GQ T GS H
Sbjct: 179 QKALD-SLMKGRTTLVIAHRLSTI-VDADKIYFIEKGQIT--GSGKH 221
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 73/152 (48%), Gaps = 22/152 (14%)
Query: 26 TIDKNLSYIGYCPQFDALNDRLTPREHLEFY-SRVRNVPSVLLNTIVNESLNKFALGHYS 84
TI +NL+Y + D ++ L L F S V N+P LNT V E
Sbjct: 91 TIRENLTY---GLEGDYTDEDLWQVLDLAFARSFVENMPD-QLNTEVGE----------- 135
Query: 85 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 144
R V+ +SGG +++L+ A A L NP ++ LDE T+ +D + + ++ ++ +GR +
Sbjct: 136 -RGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALD-SLMKGRTTL 192
Query: 145 LTSHNMEECEALCTKLTIMVNGQFTCLGSATH 176
+ +H + K+ + GQ T GS H
Sbjct: 193 VIAHRLSTI-VDADKIYFIEKGQIT--GSGKH 221
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 101/222 (45%), Gaps = 31/222 (13%)
Query: 362 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR-DSMDLVRSY 420
++ I+ + +GE G++G +G+GK+T K++ P +G + H + + +R
Sbjct: 19 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 78
Query: 421 IGYCPQFDALNDRLTPREHLEFYSRVRNV----PSVLLNTIVNESLNKFALGHYSDREVR 476
+G Q + L +R S + N+ P + + ++ + K A H E+R
Sbjct: 79 VGVVLQDNVLLNR----------SIIDNISLANPGMSVEKVIYAA--KLAGAHDFISELR 126
Query: 477 T------------LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV 524
LSGG +++++ A AL+ NP ++ DE TS +D + + + + +
Sbjct: 127 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK-I 185
Query: 525 SEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
+GR VI+ +H + + ++ +M G+ G L S
Sbjct: 186 CKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKELLS 226
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
LSGG +++++ A AL+ NP ++ DE TS +D + + + + + +GR VI+ +H +
Sbjct: 140 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK-ICKGRTVIIIAHRL 198
Query: 151 EECEALCTKLTIMVNGQFTCLGSATHLKSKSMAL 184
+ ++ +M G+ G L S+ +L
Sbjct: 199 STVKN-ADRIIVMEKGKIVEQGKHKELLSEPESL 231
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 101/222 (45%), Gaps = 31/222 (13%)
Query: 362 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR-DSMDLVRSY 420
++ I+ + +GE G++G +G+GK+T K++ P +G + H + + +R
Sbjct: 25 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84
Query: 421 IGYCPQFDALNDRLTPREHLEFYSRVRNV----PSVLLNTIVNESLNKFALGHYSDREVR 476
+G Q + L +R S + N+ P + + ++ + K A H E+R
Sbjct: 85 VGVVLQDNVLLNR----------SIIDNISLANPGMSVEKVIYAA--KLAGAHDFISELR 132
Query: 477 T------------LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV 524
LSGG +++++ A AL+ NP ++ DE TS +D + + + + +
Sbjct: 133 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK-I 191
Query: 525 SEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
+GR VI+ +H + + ++ +M G+ G L S
Sbjct: 192 CKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKELLS 232
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
LSGG +++++ A AL+ NP ++ DE TS +D + + + + + +GR VI+ +H +
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK-ICKGRTVIIIAHRL 204
Query: 151 EECEALCTKLTIMVNGQFTCLGSATHLKSKSMAL 184
+ ++ +M G+ G L S+ +L
Sbjct: 205 STVKN-ADRIIVMEKGKIVEQGKHKELLSEPESL 237
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 91/194 (46%), Gaps = 15/194 (7%)
Query: 352 YANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 411
YA+ + T + +SF V G+ L+G +GAGK+T ++L +SG + I
Sbjct: 63 YADGRET---LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDIS 119
Query: 412 D-SMDLVRSYIGYCPQFDAL-NDRLTPREHLEFYSRV----RNVPSVLLNTIVNESLNKF 465
+ +RS+IG PQ L ND + Y RV V + +++++ F
Sbjct: 120 QVTQASLRSHIGVVPQDTVLFNDTIADNIR---YGRVTAGNDEVEAAAQAAGIHDAIMAF 176
Query: 466 ALGHYSDREVR--TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERA 523
G+ + R LSGG K++++ A +L P +I LDE TS +D R + + +
Sbjct: 177 PEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAK- 235
Query: 524 VSEGRCVILTSHNM 537
V R I+ +H +
Sbjct: 236 VCANRTTIVVAHRL 249
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 11/126 (8%)
Query: 32 SYIGYCPQFDAL-NDRLTPREHLEFYSRV----RNVPSVLLNTIVNESLNKFALGHYSDR 86
S+IG PQ L ND + Y RV V + +++++ F G+ +
Sbjct: 128 SHIGVVPQDTVLFNDTIADNIR---YGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQV 184
Query: 87 EVR--TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 144
R LSGG K++++ A +L P +I LDE TS +D R + + + V R I
Sbjct: 185 GERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAK-VCANRTTI 243
Query: 145 LTSHNM 150
+ +H +
Sbjct: 244 VVAHRL 249
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 97/215 (45%), Gaps = 27/215 (12%)
Query: 365 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSYIGY 423
+SF V G+ L+G +G GK+T +L G ++ I+ + + RS I
Sbjct: 1098 LSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAI 1157
Query: 424 CPQ----FD---------ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHY 470
Q FD L+ +E +R+ N+ + + E F
Sbjct: 1158 VSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANI-----HNFIAELPEGFET-RV 1211
Query: 471 SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV 530
DR + LSGG K++++ A AL+ NP ++ LDE TS +D + + + ++RA EGR
Sbjct: 1212 GDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRA-REGRTC 1269
Query: 531 ILTSHNME-----ECEALCTKLTIMVNGQFTCLGS 560
I+ +H + +C A+ + TI+ G T L S
Sbjct: 1270 IVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMS 1304
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 10/101 (9%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
LSGG K++++ A AL+ NP ++ LDE TS +D + + + ++RA EGR I+ +H +
Sbjct: 1218 LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRA-REGRTCIVIAHRL 1276
Query: 151 E-----ECEALCTKLTIMVNGQFTCL----GSATHLKSKSM 182
+C A+ + TI+ G T L G+ L K M
Sbjct: 1277 NTVMNADCIAVVSNGTIIEKGTHTQLMSEKGAYYKLTQKQM 1317
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 87/196 (44%), Gaps = 32/196 (16%)
Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVR 418
P + ++ V G+ L+G +G GK+T +L G + +RD +++ +R
Sbjct: 432 PILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLR 491
Query: 419 SYIGYCPQFDAL-------NDRL----TPREHLEFYSRVRNVPSVL------LNTIVNES 461
+ Q AL N L RE + ++ N + NT+V
Sbjct: 492 KNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVG-- 549
Query: 462 LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIE 521
DR + LSGG K++++ A AL+ NP ++ LDE TS +D + + ++
Sbjct: 550 ----------DRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALD 598
Query: 522 RAVSEGRCVILTSHNM 537
+A ++GR I+ +H +
Sbjct: 599 KA-AKGRTTIIIAHRL 613
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
LSGG K++++ A AL+ NP ++ LDE TS +D + + +++A ++GR I+ +H +
Sbjct: 555 LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKA-AKGRTTIIIAHRL 613
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 102/220 (46%), Gaps = 28/220 (12%)
Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM 414
+G P + I+F + RG+ + G GAGKT+ M+ G ++P+ G + HS R
Sbjct: 29 EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK---IKHSGR--- 82
Query: 415 DLVRSYIGYCPQFDALNDRLTPREHLEF---YSRVRNVPSVLLNTIVNESLNKFALGHYS 471
I +C QF + T +E++ F Y R SV+ + E ++KFA
Sbjct: 83 ------ISFCSQFSWIMPG-TIKENIIFGVSYDEYR-YRSVIKACQLEEDISKFA---EK 131
Query: 472 DREVR-----TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW-TCIERAVS 525
D V TLSGG + ++S A A+ + L LD P +D + ++ +C+ + ++
Sbjct: 132 DNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 191
Query: 526 EGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 565
+ IL + ME + K+ I+ G G+ + L+
Sbjct: 192 -NKTRILVTSKMEHLKK-ADKILILHEGSSYFYGTFSELQ 229
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 16/154 (10%)
Query: 34 IGYCPQFDALNDRLTPREHLEF---YSRVRNVPSVLLNTIVNESLNKFALGHYSDREVR- 89
I +C QF + T +E++ F Y R SV+ + E ++KFA D V
Sbjct: 83 ISFCSQFSWIMPG-TIKENIIFGVSYDEYR-YRSVIKACQLEEDISKFA---EKDNIVLG 137
Query: 90 ----TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGRCVI 144
TLSGG + ++S A A+ + L LD P +D + ++ +C+ + ++ + I
Sbjct: 138 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA-NKTRI 196
Query: 145 LTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 178
L + ME + K+ I+ G G+ + L+
Sbjct: 197 LVTSKMEHLKK-ADKILILHEGSSYFYGTFSELQ 229
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 80/185 (43%), Gaps = 21/185 (11%)
Query: 369 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFD 428
+ +GE G++G NG GKTT KML G +PT G DL + Y PQ+
Sbjct: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV---------EWDLT---VAYKPQY- 411
Query: 429 ALNDRLTPREHLEFYSRVRNVPSVLLNT--IVNESLNKFALGHYSDREVRTLSGGNKRKL 486
+ Y + + S LN+ E L + DR V LSGG +++
Sbjct: 412 -----IKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRV 466
Query: 487 STAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEG-RCVILTSHNMEECEALCT 545
+ A LL + + LDEP++ +D R + I + + + ++ H++ + +
Sbjct: 467 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSD 526
Query: 546 KLTIM 550
+L +
Sbjct: 527 RLIVF 531
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 82/197 (41%), Gaps = 24/197 (12%)
Query: 369 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPT---------------SGNAYVMNHSIRDS 413
V G G++G NG GKTT K+L G + P GN + N+ R
Sbjct: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNE-LQNYFERLK 158
Query: 414 MDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDR 473
+R + PQ+ L + + E +V V E N DR
Sbjct: 159 NGEIRPVVK--PQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVL------DR 210
Query: 474 EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILT 533
E+ LSGG ++++ A ALL F DEP+S +D R + I R +EG+ V++
Sbjct: 211 ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVV 270
Query: 534 SHNMEECEALCTKLTIM 550
H++ + L + ++
Sbjct: 271 EHDLAVLDYLSDVIHVV 287
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%)
Query: 85 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 144
DRE+ LSGG ++++ A ALL F DEP+S +D R + I R +EG+ V+
Sbjct: 209 DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVL 268
Query: 145 LTSHNMEECEALCTKLTIM 163
+ H++ + L + ++
Sbjct: 269 VVEHDLAVLDYLSDVIHVV 287
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Query: 68 NTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARR 127
N E L + DR V LSGG ++++ A LL + + LDEP++ +D R
Sbjct: 435 NFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRL 494
Query: 128 FLWTCIERAVSEG-RCVILTSHNMEECEALCTKLTIM 163
+ I + + + ++ H++ + + +L +
Sbjct: 495 AVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVF 531
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 100/222 (45%), Gaps = 31/222 (13%)
Query: 362 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR-DSMDLVRSY 420
++ I+ + +GE G++G G+GK+T K++ P +G + H + + +R
Sbjct: 21 LDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 80
Query: 421 IGYCPQFDALNDRLTPREHLEFYSRVRNV----PSVLLNTIVNESLNKFALGHYSDREVR 476
+G Q + L +R S + N+ P + + ++ + K A H E+R
Sbjct: 81 VGVVLQDNVLLNR----------SIIDNISLANPGMSVEKVIYAA--KLAGAHDFISELR 128
Query: 477 T------------LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV 524
LSGG +++++ A AL+ NP ++ DE TS +D + + + + +
Sbjct: 129 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK-I 187
Query: 525 SEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
+GR VI+ +H + + ++ +M G+ G L S
Sbjct: 188 CKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKELLS 228
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
LSGG +++++ A AL+ NP ++ DE TS +D + + + + + +GR VI+ +H +
Sbjct: 142 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK-ICKGRTVIIIAHRL 200
Query: 151 EECEALCTKLTIMVNGQFTCLGSATHLKSKSMAL 184
+ ++ +M G+ G L S+ +L
Sbjct: 201 STVKN-ADRIIVMEKGKIVEQGKHKELLSEPESL 233
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 80/185 (43%), Gaps = 21/185 (11%)
Query: 369 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFD 428
+ +GE G++G NG GKTT KML G +PT G DL + Y PQ+
Sbjct: 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV---------EWDLT---VAYKPQY- 425
Query: 429 ALNDRLTPREHLEFYSRVRNVPSVLLNT--IVNESLNKFALGHYSDREVRTLSGGNKRKL 486
+ Y + + S LN+ E L + DR V LSGG +++
Sbjct: 426 -----IKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRV 480
Query: 487 STAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEG-RCVILTSHNMEECEALCT 545
+ A LL + + LDEP++ +D R + I + + + ++ H++ + +
Sbjct: 481 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSD 540
Query: 546 KLTIM 550
+L +
Sbjct: 541 RLIVF 545
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 82/197 (41%), Gaps = 24/197 (12%)
Query: 369 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPT---------------SGNAYVMNHSIRDS 413
V G G++G NG GKTT K+L G + P GN + N+ R
Sbjct: 114 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNE-LQNYFERLK 172
Query: 414 MDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDR 473
+R + PQ+ L + + E +V V E N DR
Sbjct: 173 NGEIRPVVK--PQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVL------DR 224
Query: 474 EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILT 533
E+ LSGG ++++ A ALL F DEP+S +D R + I R +EG+ V++
Sbjct: 225 ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVV 284
Query: 534 SHNMEECEALCTKLTIM 550
H++ + L + ++
Sbjct: 285 EHDLAVLDYLSDVIHVV 301
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%)
Query: 85 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 144
DRE+ LSGG ++++ A ALL F DEP+S +D R + I R +EG+ V+
Sbjct: 223 DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVL 282
Query: 145 LTSHNMEECEALCTKLTIM 163
+ H++ + L + ++
Sbjct: 283 VVEHDLAVLDYLSDVIHVV 301
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Query: 68 NTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARR 127
N E L + DR V LSGG ++++ A LL + + LDEP++ +D R
Sbjct: 449 NFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRL 508
Query: 128 FLWTCIERAVSEG-RCVILTSHNMEECEALCTKLTIM 163
+ I + + + ++ H++ + + +L +
Sbjct: 509 AVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVF 545
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 102/219 (46%), Gaps = 28/219 (12%)
Query: 356 KGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 415
+G P + I+F + RG+ + G GAGKT+ M+ G ++P+ G + HS R
Sbjct: 18 EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK---IKHSGR---- 70
Query: 416 LVRSYIGYCPQFDALNDRLTPREHLEF---YSRVRNVPSVLLNTIVNESLNKFALGHYSD 472
I +C QF + T +E++ F Y R SV+ + E ++KFA D
Sbjct: 71 -----ISFCSQFSWIMPG-TIKENIIFGVSYDEYR-YRSVIKACQLEEDISKFA---EKD 120
Query: 473 REVR-----TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW-TCIERAVSE 526
V TLSGG + ++S A A+ + L LD P +D + ++ +C+ + ++
Sbjct: 121 NIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA- 179
Query: 527 GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 565
+ IL + ME + K+ I+ G G+ + L+
Sbjct: 180 NKTRILVTSKMEHLKK-ADKILILHEGSSYFYGTFSELQ 217
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 16/154 (10%)
Query: 34 IGYCPQFDALNDRLTPREHLEF---YSRVRNVPSVLLNTIVNESLNKFALGHYSDREVR- 89
I +C QF + T +E++ F Y R SV+ + E ++KFA D V
Sbjct: 71 ISFCSQFSWIMPG-TIKENIIFGVSYDEYR-YRSVIKACQLEEDISKFA---EKDNIVLG 125
Query: 90 ----TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGRCVI 144
TLSGG + ++S A A+ + L LD P +D + ++ +C+ + ++ + I
Sbjct: 126 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA-NKTRI 184
Query: 145 LTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 178
L + ME + K+ I+ G G+ + L+
Sbjct: 185 LVTSKMEHLKK-ADKILILHEGSSYFYGTFSELQ 217
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 101/222 (45%), Gaps = 31/222 (13%)
Query: 362 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR-DSMDLVRSY 420
++ I+ + +GE G++G +G+GK+T K++ P +G + H + + +R
Sbjct: 25 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84
Query: 421 IGYCPQFDALNDRLTPREHLEFYSRVRNV----PSVLLNTIVNESLNKFALGHYSDREVR 476
+G Q + L +R S + N+ P + + ++ + K A H E+R
Sbjct: 85 VGVVLQDNVLLNR----------SIIDNISLANPGMSVEKVIYAA--KLAGAHDFISELR 132
Query: 477 T------------LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV 524
LSGG +++++ A AL+ NP ++ D+ TS +D + + + + +
Sbjct: 133 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHK-I 191
Query: 525 SEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
+GR VI+ +H + + ++ +M G+ G L S
Sbjct: 192 CKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKELLS 232
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
LSGG +++++ A AL+ NP ++ D+ TS +D + + + + + +GR VI+ +H +
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHK-ICKGRTVIIIAHRL 204
Query: 151 EECEALCTKLTIMVNGQFTCLGSATHLKSKSMAL 184
+ ++ +M G+ G L S+ +L
Sbjct: 205 STVKN-ADRIIVMEKGKIVEQGKHKELLSEPESL 237
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 14/169 (8%)
Query: 372 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQF-DAL 430
GE +LG NG+GKTT + ++G + P SGN ++ +R +R+YI Y +A
Sbjct: 30 GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRK----IRNYIRYSTNLPEAY 84
Query: 431 NDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTA 489
+T + + Y ++ + L E L LG R++ LS G + T+
Sbjct: 85 EIGVTVNDIVYLYEELKGLDRDLFL----EMLKALKLGEEILRRKLYKLSAGQSVLVRTS 140
Query: 490 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 538
+AL P ++ LDEP +D R + I+ EG IL +H ++
Sbjct: 141 LALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEG---ILVTHELD 186
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 86 REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL 145
R++ LS G + T++AL P ++ LDEP +D R + I+ EG IL
Sbjct: 124 RKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEG---IL 180
Query: 146 TSHNME 151
+H ++
Sbjct: 181 VTHELD 186
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 100/221 (45%), Gaps = 33/221 (14%)
Query: 356 KGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 415
+G P + I+F + RG+ + G GAGKT+ M+ G ++P+ G + HS R
Sbjct: 18 EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK---IKHSGR---- 70
Query: 416 LVRSYIGYCPQFD-----ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHY 470
I +C QF + + + + E+ R SV+ + E ++KFA
Sbjct: 71 -----ISFCSQFSWIMPGTIKENIIGVSYDEYRYR-----SVIKACQLEEDISKFA---E 117
Query: 471 SDREVR-----TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW-TCIERAV 524
D V TLSGG + ++S A A+ + L LD P +D + ++ +C+ + +
Sbjct: 118 KDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM 177
Query: 525 SEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 565
+ + IL + ME + K+ I+ G G+ + L+
Sbjct: 178 A-NKTRILVTSKMEHLKK-ADKILILHEGSSYFYGTFSELQ 216
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 69/156 (44%), Gaps = 21/156 (13%)
Query: 34 IGYCPQFD-----ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREV 88
I +C QF + + + + E+ R SV+ + E ++KFA D V
Sbjct: 71 ISFCSQFSWIMPGTIKENIIGVSYDEYRYR-----SVIKACQLEEDISKFA---EKDNIV 122
Query: 89 R-----TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGRC 142
TLSGG + ++S A A+ + L LD P +D + ++ +C+ + ++ +
Sbjct: 123 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA-NKT 181
Query: 143 VILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 178
IL + ME + K+ I+ G G+ + L+
Sbjct: 182 RILVTSKMEHLKK-ADKILILHEGSSYFYGTFSELQ 216
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 99/223 (44%), Gaps = 14/223 (6%)
Query: 349 FKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 408
F+ + N T P ++ ++F V G +LG G+GK+T ++ I P G V
Sbjct: 349 FRYFEN---TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDEL 405
Query: 409 SIRD-SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFAL 467
+R + +R +I PQ L T +E+L+ + R ++ ++ F +
Sbjct: 406 DVRTVKLKDLRGHISAVPQETVLFSG-TIKENLK-WGREDATDDEIVEAAKIAQIHDFII 463
Query: 468 ----GHYS--DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIE 521
G+ S +R R SGG K++LS A AL+ P ++ LD+ TS +DP + + ++
Sbjct: 464 SLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLK 523
Query: 522 RAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
R I+T L K+ ++ G+ G+ L
Sbjct: 524 RYTKGCTTFIITQKI--PTALLADKILVLHEGKVAGFGTHKEL 564
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 85 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 144
+R R SGG K++LS A AL+ P ++ LD+ TS +DP + + ++R I
Sbjct: 474 ERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFI 533
Query: 145 LTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 177
+T L K+ ++ G+ G+ L
Sbjct: 534 ITQKI--PTALLADKILVLHEGKVAGFGTHKEL 564
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 83/192 (43%), Gaps = 16/192 (8%)
Query: 372 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALN 431
GE G+LG NG GKTT ++L G I G S+ + + Y PQ N
Sbjct: 294 GEIIGILGPNGIGKTTFARILVGEITADEG-----------SVTPEKQILSYKPQRIFPN 342
Query: 432 DRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIA 491
T +++LE S+ S V + LN L + V LSGG +KL A
Sbjct: 343 YDGTVQQYLENASKDALSTSSWFFEEVTKRLN---LHRLLESNVNDLSGGELQKLYIAAT 399
Query: 492 LLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV-ILTSHNMEECEALCTKLTIM 550
L L LD+P+S +D R + I+R E + V + H++ + + ++ I+
Sbjct: 400 LAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRI-IV 458
Query: 551 VNGQFTCLGSAT 562
G+ G AT
Sbjct: 459 FKGEPEKAGLAT 470
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 89/205 (43%), Gaps = 26/205 (12%)
Query: 374 CFGLLGLNGAGKTTTFKMLTGAIKPTSG--NAYVMNHSIRDSMDLVRSYIGYCPQFDALN 431
G+LG NG GKTT K+L G I P G N+ V + Y Y + +
Sbjct: 27 ILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIY-NYFKELYSNE 85
Query: 432 DRLTPR-EHLEFYSRVRNVPSVLLNTIVNESLNKFA-------------LGHYSDREVRT 477
++ + +++E+ S+ L VNE L K + + +++
Sbjct: 86 LKIVHKIQYVEYASK-------FLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANI 138
Query: 478 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 537
LSGG ++L A +LL + D+P+S +D R + I R + + + VI+ H++
Sbjct: 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAI-RELLKNKYVIVVDHDL 197
Query: 538 EECEALCTKLTIMVNGQFTCLGSAT 562
+ L T L ++ G+ + G +
Sbjct: 198 IVLDYL-TDLIHIIYGESSVYGRVS 221
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 88 VRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV-ILT 146
V LSGG +KL A L L LD+P+S +D R + I+R E + V +
Sbjct: 383 VNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFII 442
Query: 147 SHNMEECEALCTKLTIMVNGQFTCLGSAT 175
H++ + + ++ I+ G+ G AT
Sbjct: 443 DHDLSIHDYIADRI-IVFKGEPEKAGLAT 470
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 85 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 144
+++ LSGG ++L A +LL + D+P+S +D R + I R + + + VI
Sbjct: 133 NKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAI-RELLKNKYVI 191
Query: 145 LTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGNDLGRG 194
+ H++ + L T L ++ G+ + G SKS A V N+ +G
Sbjct: 192 VVDHDLIVLDYL-TDLIHIIYGESSVYGRV----SKSYAARVGINNFLKG 236
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 100/222 (45%), Gaps = 31/222 (13%)
Query: 362 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR-DSMDLVRSY 420
++ I+ + +GE G++G +G+GK+T K++ P +G + H + + +R
Sbjct: 19 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 78
Query: 421 IGYCPQFDALNDRLTPREHLEFYSRVRNV----PSVLLNTIVNESLNKFALGHYSDREVR 476
+G Q + L +R S + N+ P + + ++ + K A H E+R
Sbjct: 79 VGVVLQDNVLLNR----------SIIDNISLANPGMSVEKVIYAA--KLAGAHDFISELR 126
Query: 477 T------------LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV 524
LSGG +++++ A AL+ NP ++ DE TS +D + + + + +
Sbjct: 127 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK-I 185
Query: 525 SEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
+GR VI+ + + + ++ +M G+ G L S
Sbjct: 186 CKGRTVIIIAARLSTVKN-ADRIIVMEKGKIVEQGKHKELLS 226
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
LSGG +++++ A AL+ NP ++ DE TS +D + + + + + +GR VI+ + +
Sbjct: 140 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK-ICKGRTVIIIAARL 198
Query: 151 EECEALCTKLTIMVNGQFTCLGSATHLKSKSMAL 184
+ ++ +M G+ G L S+ +L
Sbjct: 199 STVKN-ADRIIVMEKGKIVEQGKHKELLSEPESL 231
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 100/222 (45%), Gaps = 31/222 (13%)
Query: 362 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR-DSMDLVRSY 420
++ I+ + +GE G++G +G+GK+T K++ P +G + H + + +R
Sbjct: 25 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84
Query: 421 IGYCPQFDALNDRLTPREHLEFYSRVRNV----PSVLLNTIVNESLNKFALGHYSDREVR 476
+G Q + L +R S + N+ P + + ++ + K A H E+R
Sbjct: 85 VGVVLQDNVLLNR----------SIIDNISLANPGMSVEKVIYAA--KLAGAHDFISELR 132
Query: 477 T------------LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV 524
LSGG +++++ A AL+ NP ++ DE TS +D + + + + +
Sbjct: 133 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK-I 191
Query: 525 SEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
+GR VI+ + + + ++ +M G+ G L S
Sbjct: 192 CKGRTVIIIAARLSTVKN-ADRIIVMEKGKIVEQGKHKELLS 232
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
LSGG +++++ A AL+ NP ++ DE TS +D + + + + + +GR VI+ + +
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK-ICKGRTVIIIAARL 204
Query: 151 EECEALCTKLTIMVNGQFTCLGSATHLKSKSMAL 184
+ ++ +M G+ G L S+ +L
Sbjct: 205 STVKN-ADRIIVMEKGKIVEQGKHKELLSEPESL 237
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 94/215 (43%), Gaps = 4/215 (1%)
Query: 354 NSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV--MNHSIR 411
S G+ + I+ + GE ++G +G+GK+T + L G + +N +
Sbjct: 11 KSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAK 70
Query: 412 DS-MDLVRSYIGYCPQFDALNDRLTPREHLEFYS-RVRNVPSVLLNTIVNESLNKFALGH 469
D+ ++ VR +G Q L +T ++ +VR P E L+K L
Sbjct: 71 DTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKD 130
Query: 470 YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC 529
+ +LSGG ++++ A AL P ++ DEPTS +DP + + +++ +EG
Sbjct: 131 KAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMT 190
Query: 530 VILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
+++ +H M + ++ M G G L
Sbjct: 191 MVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDL 225
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 54/120 (45%)
Query: 58 RVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEP 117
+VR P E L+K L + +LSGG ++++ A AL P ++ DEP
Sbjct: 106 KVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEP 165
Query: 118 TSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 177
TS +DP + + +++ +EG +++ +H M + ++ M G G L
Sbjct: 166 TSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDL 225
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 94/215 (43%), Gaps = 4/215 (1%)
Query: 354 NSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV--MNHSIR 411
S G+ + I+ + GE ++G +G+GK+T + L G + +N +
Sbjct: 32 KSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAK 91
Query: 412 DS-MDLVRSYIGYCPQFDALNDRLTPREHLEFYS-RVRNVPSVLLNTIVNESLNKFALGH 469
D+ ++ VR +G Q L +T ++ +VR P E L+K L
Sbjct: 92 DTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKD 151
Query: 470 YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC 529
+ +LSGG ++++ A AL P ++ DEPTS +DP + + +++ +EG
Sbjct: 152 KAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMT 211
Query: 530 VILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
+++ +H M + ++ M G G L
Sbjct: 212 MVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDL 246
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 54/120 (45%)
Query: 58 RVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEP 117
+VR P E L+K L + +LSGG ++++ A AL P ++ DEP
Sbjct: 127 KVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEP 186
Query: 118 TSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 177
TS +DP + + +++ +EG +++ +H M + ++ M G G L
Sbjct: 187 TSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDL 246
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 99/215 (46%), Gaps = 28/215 (13%)
Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRS 419
P + I+F + RG+ + G GAGKT+ M+ G ++P+ G + HS R
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK---IKHSGR-------- 100
Query: 420 YIGYCPQFDALNDRLTPREHLEF---YSRVRNVPSVLLNTIVNESLNKFALGHYSDREVR 476
I +C QF + T +E++ F Y R SV+ + E ++KFA D V
Sbjct: 101 -ISFCSQFSWIMPG-TIKENIIFGVSYDEYR-YRSVIKACQLEEDISKFA---EKDNIVL 154
Query: 477 -----TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGRCV 530
TLS G + K+S A A+ + L LD P +D + ++ +C+ + ++ +
Sbjct: 155 GEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA-NKTR 213
Query: 531 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 565
IL + ME + K+ I+ G G+ + L+
Sbjct: 214 ILVTSKMEHLKK-ADKILILHEGSSYFYGTFSELQ 247
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 16/154 (10%)
Query: 34 IGYCPQFDALNDRLTPREHLEF---YSRVRNVPSVLLNTIVNESLNKFALGHYSDREVR- 89
I +C QF + T +E++ F Y R SV+ + E ++KFA D V
Sbjct: 101 ISFCSQFSWIMPG-TIKENIIFGVSYDEYR-YRSVIKACQLEEDISKFA---EKDNIVLG 155
Query: 90 ----TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGRCVI 144
TLS G + K+S A A+ + L LD P +D + ++ +C+ + ++ + I
Sbjct: 156 EGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA-NKTRI 214
Query: 145 LTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 178
L + ME + K+ I+ G G+ + L+
Sbjct: 215 LVTSKMEHLKK-ADKILILHEGSSYFYGTFSELQ 247
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 99/215 (46%), Gaps = 28/215 (13%)
Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRS 419
P + I+F + RG+ + G GAGKT+ M+ G ++P+ G + HS R
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK---IKHSGR-------- 100
Query: 420 YIGYCPQFDALNDRLTPREHL---EFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVR 476
I +C QF + T +E++ Y R SV+ + E ++KFA D V
Sbjct: 101 -ISFCSQFSWIMPG-TIKENIIAGVSYDEYR-YRSVIKACQLEEDISKFA---EKDNIVL 154
Query: 477 -----TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGRCV 530
TLSGG + ++S A A+ + L LD P +D + ++ +C+ + ++ +
Sbjct: 155 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA-NKTR 213
Query: 531 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 565
IL + ME + K+ I+ G G+ + L+
Sbjct: 214 ILVTSKMEHLKK-ADKILILHEGSSYFYGTFSELQ 247
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 90 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGRCVILTSH 148
TLSGG + ++S A A+ + L LD P +D + ++ +C+ + ++ + IL +
Sbjct: 160 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA-NKTRILVTS 218
Query: 149 NMEECEALCTKLTIMVNGQFTCLGSATHLK 178
ME + K+ I+ G G+ + L+
Sbjct: 219 KMEHLKK-ADKILILHEGSSYFYGTFSELQ 247
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 97/218 (44%), Gaps = 35/218 (16%)
Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRS 419
P + I+F + RG+ + G GAGKT+ M+ G ++P+ G + HS R
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK---IKHSGR-------- 100
Query: 420 YIGYCPQFD-----ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFA------LG 468
I +C QF + + + + E+ R SV+ + E ++KFA LG
Sbjct: 101 -ISFCSQFSWIMPGTIKENIIGVSYDEYRYR-----SVIKACQLEEDISKFAEKDNIVLG 154
Query: 469 HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW-TCIERAVSEG 527
TLS G + K+S A A+ + L LD P +D + ++ +C+ + ++
Sbjct: 155 EGG----ITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA-N 209
Query: 528 RCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 565
+ IL + ME + K+ I+ G G+ + L+
Sbjct: 210 KTRILVTSKMEHLKK-ADKILILHEGSSYFYGTFSELQ 246
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 21/156 (13%)
Query: 34 IGYCPQFD-----ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREV 88
I +C QF + + + + E+ R SV+ + E ++KFA D V
Sbjct: 101 ISFCSQFSWIMPGTIKENIIGVSYDEYRYR-----SVIKACQLEEDISKFA---EKDNIV 152
Query: 89 R-----TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGRC 142
TLS G + K+S A A+ + L LD P +D + ++ +C+ + ++ +
Sbjct: 153 LGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA-NKT 211
Query: 143 VILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 178
IL + ME + K+ I+ G G+ + L+
Sbjct: 212 RILVTSKMEHLKK-ADKILILHEGSSYFYGTFSELQ 246
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 99/214 (46%), Gaps = 24/214 (11%)
Query: 362 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR--DSMDLVRS 419
+N +S + GE ++G NGAGK+T ++LTG + P+ G +++ ++ L R+
Sbjct: 27 INDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALART 86
Query: 420 YIGYCPQFDALNDRLTPREHLEF----YSRVRNVPSVLLNTIVNESLNKFALGHYSDREV 475
Q+ L + E ++ Y ++ + L ++ ++ + AL + R+
Sbjct: 87 R-AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQA--LQQVMAQT-DCLAL---AQRDY 139
Query: 476 RTLSGGNKRKLSTA--IALLGNPP----LIFLDEPTSGMDPGARRF---LWTCIERAVSE 526
R LSGG ++++ A +A L P +FLDEPTS +D ++ L + R
Sbjct: 140 RVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPL 199
Query: 527 GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 560
C +L H++ ++ ++ G+ G+
Sbjct: 200 AVCCVL--HDLNLAALYADRIMLLAQGKLVACGT 231
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 11/99 (11%)
Query: 84 SDREVRTLSGGNKRKLSTA--IALLGNPP----LIFLDEPTSGMDPGARRF---LWTCIE 134
+ R+ R LSGG ++++ A +A L P +FLDEPTS +D ++ L +
Sbjct: 135 AQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLT 194
Query: 135 RAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 173
R C +L H++ ++ ++ G+ G+
Sbjct: 195 RQEPLAVCCVL--HDLNLAALYADRIMLLAQGKLVACGT 231
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/224 (21%), Positives = 101/224 (45%), Gaps = 34/224 (15%)
Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVR 418
PA+ I+ + G+ L+G +G+GK+T ++T G+ + H +R+ ++ +R
Sbjct: 357 PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLR 416
Query: 419 SYIGYCPQ-FDALNDRLT-----------PREHLEFYSRVRNVPSVL------LNTIVNE 460
+ + Q ND + RE +E +R+ + L+TI+ E
Sbjct: 417 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGE 476
Query: 461 SLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCI 520
+ LSGG +++++ A ALL + P++ LDE TS +D + R + +
Sbjct: 477 N-------------GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL 523
Query: 521 ERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
+ + + R ++ +H + E ++ ++ +G G+ + L
Sbjct: 524 DE-LQKNRTSLVIAHRLSTIEQ-ADEIVVVEDGIIVERGTHSEL 565
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
LSGG +++++ A ALL + P++ LDE TS +D + R + ++ + + R ++ +H +
Sbjct: 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE-LQKNRTSLVIAHRL 539
Query: 151 EECEALCTKLTIMVNGQFTCLGSATHLKSK 180
E ++ ++ +G G+ + L ++
Sbjct: 540 STIEQ-ADEIVVVEDGIIVERGTHSELLAQ 568
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 19/180 (10%)
Query: 373 ECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALND 432
E ++G NG GKTT K+L GA+KP G D+ + + PQ A
Sbjct: 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQ------------DIPKLNVSMKPQKIAPKF 426
Query: 433 RLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIAL 492
T R+ F+ ++R L + + + D+EV+ LSGG ++++ +A
Sbjct: 427 PGTVRQL--FFKKIRG--QFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLA- 481
Query: 493 LGNPPLIFL-DEPTSGMDPGARRFLWTCIERAV-SEGRCVILTSHNMEECEALCTKLTIM 550
LG P I+L DEP++ +D R I R + + + H+ L K+ +
Sbjct: 482 LGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVF 541
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 82/197 (41%), Gaps = 23/197 (11%)
Query: 372 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGN----------------AYVMNHSIRDSMD 415
G+ GL+G NG GK+T K+L G KP G + + N+ + D
Sbjct: 103 GQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLED 162
Query: 416 LVRSYIGYCPQF-DALNDRLT-PREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDR 473
+++ I PQ+ D + + P + + ++R S V + L + R
Sbjct: 163 DIKAIIK--PQYVDNIPRAIKGPVQKVGELLKLRMEKS---PEDVKRYIKILQLENVLKR 217
Query: 474 EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILT 533
++ LSGG ++ + ++ + + DEP+S +D R I ++ + VI
Sbjct: 218 DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICV 277
Query: 534 SHNMEECEALCTKLTIM 550
H++ + L + I+
Sbjct: 278 EHDLSVLDYLSDFVCII 294
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 85 DREVRTLSGGNKRKLSTAIALLGNPPLIFL-DEPTSGMDPGARRFLWTCIERAV-SEGRC 142
D+EV+ LSGG ++++ +A LG P I+L DEP++ +D R I R + +
Sbjct: 462 DQEVQHLSGGELQRVAIVLA-LGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKT 520
Query: 143 VILTSHNMEECEALCTKLTIM 163
+ H+ L K+ +
Sbjct: 521 AFIVEHDFIMATYLADKVIVF 541
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 40/93 (43%)
Query: 71 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 130
V + L + R++ LSGG ++ + ++ + + DEP+S +D R
Sbjct: 202 VKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAA 261
Query: 131 TCIERAVSEGRCVILTSHNMEECEALCTKLTIM 163
I ++ + VI H++ + L + I+
Sbjct: 262 QIIRSLLAPTKYVICVEHDLSVLDYLSDFVCII 294
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 99/217 (45%), Gaps = 33/217 (15%)
Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRS 419
P + I+F + RG+ + G GAGKT+ M+ G ++P+ G + HS R
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK---IKHSGR-------- 100
Query: 420 YIGYCPQFDALNDRLTP---REHL--EFYSRVRNVPSVLLNTIVNESLNKFALGHYSDRE 474
I +C Q N + P +E++ Y R SV+ + E ++KFA D
Sbjct: 101 -ISFCSQ----NSWIMPGTIKENIIGVSYDEYR-YRSVIKACQLEEDISKFA---EKDNI 151
Query: 475 VR-----TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGR 528
V TLSGG + ++S A A+ + L LD P +D + ++ +C+ + ++ +
Sbjct: 152 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA-NK 210
Query: 529 CVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 565
IL + ME + K+ I+ G G+ + L+
Sbjct: 211 TRILVTSKMEHLKK-ADKILILHEGSSYFYGTFSELQ 246
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 90 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGRCVILTSH 148
TLSGG + ++S A A+ + L LD P +D + ++ +C+ + ++ + IL +
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA-NKTRILVTS 217
Query: 149 NMEECEALCTKLTIMVNGQFTCLGSATHLK 178
ME + K+ I+ G G+ + L+
Sbjct: 218 KMEHLKK-ADKILILHEGSSYFYGTFSELQ 246
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 99/217 (45%), Gaps = 33/217 (15%)
Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRS 419
P + I+F + RG+ + G GAGKT+ M+ G ++P+ G + HS R
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK---IKHSGR-------- 100
Query: 420 YIGYCPQFDALNDRLTP---REHL--EFYSRVRNVPSVLLNTIVNESLNKFALGHYSDRE 474
I +C Q N + P +E++ Y R SV+ + E ++KFA D
Sbjct: 101 -ISFCSQ----NSWIMPGTIKENIIGVSYDEYR-YRSVIKACQLEEDISKFA---EKDNI 151
Query: 475 VR-----TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGR 528
V TLSGG + ++S A A+ + L LD P +D + ++ +C+ + ++ +
Sbjct: 152 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA-NK 210
Query: 529 CVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 565
IL + ME + K+ I+ G G+ + L+
Sbjct: 211 TRILVTSKMEHLKK-ADKILILHEGSSYFYGTFSELQ 246
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 90 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGRCVILTSH 148
TLSGG + ++S A A+ + L LD P +D + ++ +C+ + ++ + IL +
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA-NKTRILVTS 217
Query: 149 NMEECEALCTKLTIMVNGQFTCLGSATHLK 178
ME + K+ I+ G G+ + L+
Sbjct: 218 KMEHLKK-ADKILILHEGSSYFYGTFSELQ 246
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 90/201 (44%), Gaps = 33/201 (16%)
Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVR 418
PA+ I+ + G+ L+G +G+GK+T ++T G + H +R+ ++ +R
Sbjct: 357 PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLR 416
Query: 419 SYIGYCPQ-FDALNDRLT-----------PREHLEFYSRVRNVPSVL------LNTIVNE 460
+ + Q ND + RE +E +R+ + L+T++ E
Sbjct: 417 NQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGE 476
Query: 461 SLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCI 520
+ LSGG +++++ A ALL + P++ LDE TS +D + R + +
Sbjct: 477 N-------------GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL 523
Query: 521 ERAVSEGRCVILTSHNMEECE 541
+ + + R ++ +H + E
Sbjct: 524 DE-LQKNRTSLVIAHRLSTIE 543
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
LSGG +++++ A ALL + P++ LDE TS +D + R + ++ + + R ++ +H +
Sbjct: 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE-LQKNRTSLVIAHRL 539
Query: 151 EECE 154
E
Sbjct: 540 STIE 543
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 90/190 (47%), Gaps = 19/190 (10%)
Query: 365 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS-IRDSMDLVRSYIGY 423
++F + G+ L+G NG+GK+T +L +PT G + ++ + + +
Sbjct: 38 LTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAA 97
Query: 424 CPQFDALNDRLTPREHLEF----YSRVRNVPSVLLNTIVNESLNKFALGHYSDREV---- 475
Q L R + RE++ + + + +V + + ++ ++ F G+ D EV
Sbjct: 98 VGQEPLLFGR-SFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGY--DTEVGETG 154
Query: 476 RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG----ARRFLWTCIERAVSEGRCVI 531
LSGG ++ ++ A AL+ P L+ LD+ TS +D G +R L+ E A R V+
Sbjct: 155 NQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWA---SRTVL 211
Query: 532 LTSHNMEECE 541
L +H + E
Sbjct: 212 LITHQLSLAE 221
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 13/104 (12%)
Query: 59 VRNVPSVLLNTIVNESLNKFALGHYSDREV----RTLSGGNKRKLSTAIALLGNPPLIFL 114
+ + +V + + ++ ++ F G+ D EV LSGG ++ ++ A AL+ P L+ L
Sbjct: 123 MEEITAVAMESGAHDFISGFPQGY--DTEVGETGNQLSGGQRQAVALARALIRKPRLLIL 180
Query: 115 DEPTSGMDPG----ARRFLWTCIERAVSEGRCVILTSHNMEECE 154
D+ TS +D G +R L+ E A R V+L +H + E
Sbjct: 181 DQATSALDAGNQLRVQRLLYESPEWA---SRTVLLITHQLSLAE 221
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 117/288 (40%), Gaps = 41/288 (14%)
Query: 305 FSRCFTR------SNLHPVPVSLXXXXXXXXXXXXXHGADSGDVLVVKRL-----FK-IY 352
+SR FTR + + + ++L D D + ++ + FK ++
Sbjct: 302 YSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDPDAVELREVRGEIEFKNVW 361
Query: 353 ANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 412
+ KP + I+F + G+ L+G G+GKTT +L G V IR
Sbjct: 362 FSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRK 421
Query: 413 -SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYS 471
+RS IG Q D + T +E+L++ + P +E + + A +S
Sbjct: 422 IKRSSLRSSIGIVLQ-DTILFSTTVKENLKYGN-----PGA-----TDEEIKEAAKLTHS 470
Query: 472 DREVR---------------TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 516
D ++ LS G ++ L+ A L NP ++ LDE TS +D + +
Sbjct: 471 DHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSI 530
Query: 517 WTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
+ + + EG+ I+ +H + + + ++ +G+ +G L
Sbjct: 531 QAAMWKLM-EGKTSIIIAHRLNTIKN-ADLIIVLRDGEIVEMGKHDEL 576
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
LS G ++ L+ A L NP ++ LDE TS +D + + + + + EG+ I+ +H +
Sbjct: 492 LSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRL 550
Query: 151 EECEALCTKLTIMVNGQFTCLGSATHLKSK 180
+ + ++ +G+ +G L K
Sbjct: 551 NTIKN-ADLIIVLRDGEIVEMGKHDELIQK 579
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 97/216 (44%), Gaps = 28/216 (12%)
Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRS 419
P + I+ + +GE + G G+GKT+ ++ G ++ + G ++ HS R
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG---IIKHSGR-------- 100
Query: 420 YIGYCPQFDALNDRLTPREHLEF---YSRVRNVPSVLLNTIVNESLNKFALGHYSDREVR 476
+ +C QF + T +E++ F Y R SV+ + + + KFA D V
Sbjct: 101 -VSFCSQFSWIMPG-TIKENIIFGVSYDEYR-YKSVVKACQLQQDITKFA---EQDNTVL 154
Query: 477 -----TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGRCV 530
TLSGG + ++S A A+ + L LD P +D ++ +C+ + ++ +
Sbjct: 155 GEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA-NKTR 213
Query: 531 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
IL + ME K+ I+ G G+ + L+S
Sbjct: 214 ILVTSKMEHLRK-ADKILILHQGSSYFYGTFSELQS 248
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 81/185 (43%), Gaps = 17/185 (9%)
Query: 4 TTTPKRVVTLLLTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEF---YSRVR 60
+T + L+L ++ S I K+ + +C QF + T +E++ F Y R
Sbjct: 72 STGSGKTSLLMLILGELEASEGII-KHSGRVSFCSQFSWIMPG-TIKENIIFGVSYDEYR 129
Query: 61 NVPSVLLNTIVNESLNKFALGHYSDREVR-----TLSGGNKRKLSTAIALLGNPPLIFLD 115
SV+ + + + KFA D V TLSGG + ++S A A+ + L LD
Sbjct: 130 -YKSVVKACQLQQDITKFA---EQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLD 185
Query: 116 EPTSGMDPGARRFLW-TCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSA 174
P +D ++ +C+ + ++ + IL + ME K+ I+ G G+
Sbjct: 186 SPFGYLDVFTEEQVFESCVCKLMA-NKTRILVTSKMEHLRK-ADKILILHQGSSYFYGTF 243
Query: 175 THLKS 179
+ L+S
Sbjct: 244 SELQS 248
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 81/178 (45%), Gaps = 11/178 (6%)
Query: 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 418
KP + +I+ + +G G NG GKTT K ++ +KP G I V+
Sbjct: 22 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK----VK 77
Query: 419 SYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVN--ESLNKFALGHYSDREVR 476
I + P+ + +++ ++L+ + + V V N I++ ES+ L +++
Sbjct: 78 GKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KVNKNEIMDALESVEVLDLK----KKLG 132
Query: 477 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTS 534
LS G R++ A LL N + LD+P +D ++ + I + E VI++S
Sbjct: 133 ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISS 190
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 97/216 (44%), Gaps = 28/216 (12%)
Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRS 419
P + I+ + +GE + G G+GKT+ ++ G ++ + G ++ HS R
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG---IIKHSGR-------- 100
Query: 420 YIGYCPQFDALNDRLTPREHLEF---YSRVRNVPSVLLNTIVNESLNKFALGHYSDREVR 476
+ +C QF + T +E++ F Y R SV+ + + + KFA D V
Sbjct: 101 -VSFCSQFSWIMPG-TIKENIIFGVSYDEYR-YKSVVKACQLQQDITKFA---EQDNTVL 154
Query: 477 -----TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGRCV 530
TLSGG + ++S A A+ + L LD P +D ++ +C+ + ++ +
Sbjct: 155 GEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA-NKTR 213
Query: 531 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
IL + ME K+ I+ G G+ + L+S
Sbjct: 214 ILVTSKMEHLRK-ADKILILHQGSSYFYGTFSELQS 248
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 81/185 (43%), Gaps = 17/185 (9%)
Query: 4 TTTPKRVVTLLLTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEF---YSRVR 60
+T + L+L ++ S I K+ + +C QF + T +E++ F Y R
Sbjct: 72 STGSGKTSLLMLILGELEASEGII-KHSGRVSFCSQFSWIMPG-TIKENIIFGVSYDEYR 129
Query: 61 NVPSVLLNTIVNESLNKFALGHYSDREVR-----TLSGGNKRKLSTAIALLGNPPLIFLD 115
SV+ + + + KFA D V TLSGG + ++S A A+ + L LD
Sbjct: 130 -YKSVVKACQLQQDITKFA---EQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLD 185
Query: 116 EPTSGMDPGARRFLW-TCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSA 174
P +D ++ +C+ + ++ + IL + ME K+ I+ G G+
Sbjct: 186 SPFGYLDVFTEEQVFESCVCKLMA-NKTRILVTSKMEHLRK-ADKILILHQGSSYFYGTF 243
Query: 175 THLKS 179
+ L+S
Sbjct: 244 SELQS 248
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 85/191 (44%), Gaps = 27/191 (14%)
Query: 362 VNQISFGVGRGECFGLLGLNGAGKTTTFKML------TGAIKPTSGNAYVMNHSIRDSMD 415
+ I+F + G L+G G+GK+T K+L G IK N +N R+S
Sbjct: 36 LKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKN---VNKYNRNS-- 90
Query: 416 LVRSYIGYCPQFDALNDRLTPREHLEF---YSRVRNVPSVLLNTIVNESLNKF--ALGHY 470
+RS IG PQ D + E +++ Y ++ ++ + L F AL
Sbjct: 91 -IRSIIGIVPQ-----DTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKK 144
Query: 471 SDREV----RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE 526
D V LSGG +++++ A LL +P ++ DE TS +D +E + +
Sbjct: 145 WDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVE-DLRK 203
Query: 527 GRCVILTSHNM 537
R +I+ +H +
Sbjct: 204 NRTLIIIAHRL 214
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
LSGG +++++ A LL +P ++ DE TS +D +E + + R +I+ +H +
Sbjct: 156 LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVE-DLRKNRTLIIIAHRL 214
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 88/190 (46%), Gaps = 19/190 (10%)
Query: 365 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS-IRDSMDLVRSYIGY 423
++F + G+ L+G NG+GK+T +L +PT G + ++ + + +
Sbjct: 38 LTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAA 97
Query: 424 CPQFDALNDRLTPREHLEF----YSRVRNVPSVLLNTIVNESLNKFALGHYSDREV---- 475
Q L R + RE++ + + + +V + + ++ ++ F G+ D EV
Sbjct: 98 VGQEPLLFGR-SFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGY--DTEVGETG 154
Query: 476 RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG----ARRFLWTCIERAVSEGRCVI 531
LSGG ++ ++ A AL+ P L+ LD TS +D G +R L+ E A R V+
Sbjct: 155 NQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWA---SRTVL 211
Query: 532 LTSHNMEECE 541
L + + E
Sbjct: 212 LITQQLSLAE 221
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 13/104 (12%)
Query: 59 VRNVPSVLLNTIVNESLNKFALGHYSDREV----RTLSGGNKRKLSTAIALLGNPPLIFL 114
+ + +V + + ++ ++ F G+ D EV LSGG ++ ++ A AL+ P L+ L
Sbjct: 123 MEEITAVAMESGAHDFISGFPQGY--DTEVGETGNQLSGGQRQAVALARALIRKPRLLIL 180
Query: 115 DEPTSGMDPG----ARRFLWTCIERAVSEGRCVILTSHNMEECE 154
D TS +D G +R L+ E A R V+L + + E
Sbjct: 181 DNATSALDAGNQLRVQRLLYESPEWA---SRTVLLITQQLSLAE 221
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 43/83 (51%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
LSGG ++++S A AL P ++ DEPTS +DP + +++ EG+ +++ +H M
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 213
Query: 151 EECEALCTKLTIMVNGQFTCLGS 173
+ + + + G+ G
Sbjct: 214 GFARHVSSHVIFLHQGKIEEEGD 236
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 43/83 (51%)
Query: 478 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 537
LSGG ++++S A AL P ++ DEPTS +DP + +++ EG+ +++ +H M
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 213
Query: 538 EECEALCTKLTIMVNGQFTCLGS 560
+ + + + G+ G
Sbjct: 214 GFARHVSSHVIFLHQGKIEEEGD 236
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 96/215 (44%), Gaps = 27/215 (12%)
Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRS 419
P + I+ + +GE + G G+GKT+ ++ G ++ + G ++ HS R
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG---IIKHSGR-------- 100
Query: 420 YIGYCPQFDALNDRLTPREHL--EFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVR- 476
+ +C QF + T +E++ Y R SV+ + + + KFA D V
Sbjct: 101 -VSFCSQFSWIMPG-TIKENIIGVSYDEYR-YKSVVKACQLQQDITKFA---EQDNTVLG 154
Query: 477 ----TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGRCVI 531
TLSGG + ++S A A+ + L LD P +D ++ +C+ + ++ + I
Sbjct: 155 EGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA-NKTRI 213
Query: 532 LTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
L + ME K+ I+ G G+ + L+S
Sbjct: 214 LVTSKMEHLRK-ADKILILHQGSSYFYGTFSELQS 247
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 90 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGRCVILTSH 148
TLSGG + ++S A A+ + L LD P +D ++ +C+ + ++ + IL +
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA-NKTRILVTS 217
Query: 149 NMEECEALCTKLTIMVNGQFTCLGSATHLKS 179
ME K+ I+ G G+ + L+S
Sbjct: 218 KMEHLRK-ADKILILHQGSSYFYGTFSELQS 247
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 94/221 (42%), Gaps = 30/221 (13%)
Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM 414
++ P +N I+F + G ++G G GK++ L + G+
Sbjct: 14 ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV----------- 62
Query: 415 DLVRSYIGYCPQFDAL-NDRLTPREHLEF--------YSRVRNVPSVLLNTIVNESLNKF 465
++ + Y PQ + ND L RE++ F Y V ++L + + S ++
Sbjct: 63 -AIKGSVAYVPQQAWIQNDSL--RENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRT 119
Query: 466 ALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCI--ERA 523
+G LSGG K+++S A A+ N + D+P S +D + ++ + +
Sbjct: 120 EIGEKG----VNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKG 175
Query: 524 VSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
+ + + IL +H+M + + +M G+ + +GS L
Sbjct: 176 MLKNKTRILVTHSMSYLPQVDV-IIVMSGGKISEMGSYQEL 215
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCI--ERAVSEGRCVILTSH 148
LSGG K+++S A A+ N + D+P S +D + ++ + + + + + IL +H
Sbjct: 128 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTH 187
Query: 149 NMEECEALCTKLTIMVNGQFTCLGSATHLKSKSMAL 184
+M + + +M G+ + +GS L ++ A
Sbjct: 188 SMSYLPQVDV-IIVMSGGKISEMGSYQELLARDGAF 222
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 95/216 (43%), Gaps = 28/216 (12%)
Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRS 419
P + I+ + +GE + G G+GKT+ ++ G ++ + G ++ HS R
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG---IIKHSGR-------- 100
Query: 420 YIGYCPQFDALNDRLTPREHL---EFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVR 476
+ +C QF + T +E++ Y R SV+ + + + KFA D V
Sbjct: 101 -VSFCSQFSWIMPG-TIKENIIRGVSYDEYR-YKSVVKACQLQQDITKFA---EQDNTVL 154
Query: 477 -----TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP-GARRFLWTCIERAVSEGRCV 530
TLSGG + ++S A A+ + L LD P +D + +C+ + ++ +
Sbjct: 155 GEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA-NKTR 213
Query: 531 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
IL + ME K+ I+ G G+ + L+S
Sbjct: 214 ILVTSKMEHLRK-ADKILILHQGSSYFYGTFSELQS 248
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 90 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP-GARRFLWTCIERAVSEGRCVILTSH 148
TLSGG + ++S A A+ + L LD P +D + +C+ + ++ + IL +
Sbjct: 160 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA-NKTRILVTS 218
Query: 149 NMEECEALCTKLTIMVNGQFTCLGSATHLKS 179
ME K+ I+ G G+ + L+S
Sbjct: 219 KMEHLRK-ADKILILHQGSSYFYGTFSELQS 248
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 96/216 (44%), Gaps = 28/216 (12%)
Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRS 419
P + I+ + +GE + G G+GKT+ ++ G ++ + G ++ HS R
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG---IIKHSGR-------- 100
Query: 420 YIGYCPQFDALNDRLTPREHL---EFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVR 476
+ +C QF + T +E++ Y R SV+ + + + KFA D V
Sbjct: 101 -VSFCSQFSWIMPG-TIKENIISGVSYDEYR-YKSVVKACQLQQDITKFA---EQDNTVL 154
Query: 477 -----TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGRCV 530
TLSGG + ++S A A+ + L LD P +D ++ +C+ + ++ +
Sbjct: 155 GEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA-NKTR 213
Query: 531 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
IL + ME K+ I+ G G+ + L+S
Sbjct: 214 ILVTSKMEHLRK-ADKILILHQGSSYFYGTFSELQS 248
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 90 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGRCVILTSH 148
TLSGG + ++S A A+ + L LD P +D ++ +C+ + ++ + IL +
Sbjct: 160 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA-NKTRILVTS 218
Query: 149 NMEECEALCTKLTIMVNGQFTCLGSATHLKS 179
ME K+ I+ G G+ + L+S
Sbjct: 219 KMEHLRK-ADKILILHQGSSYFYGTFSELQS 248
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/232 (21%), Positives = 96/232 (41%), Gaps = 18/232 (7%)
Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT-- 399
++ V+ L +Y +GT A + IS + ++G + +GK+T + +T + P
Sbjct: 4 IIRVEDLRAVYLVREGTIKAADGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGR 63
Query: 400 --SGNAYVMNHSI----RDSMDLVR-SYIGYCPQF--DALNDRLTPREHLEFYSRVRNVP 450
SG + + + +R I PQ +LN + EH + V
Sbjct: 64 ILSGRVLYKGKDLLTMREEELRKIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGV- 122
Query: 451 SVLLNTIVNESLNKFALGHYSDREVR-----TLSGGNKRKLSTAIALLGNPPLIFLDEPT 505
+ ++ ++ K + + V LSGG K+++ A+ALL +P ++ LDEPT
Sbjct: 123 RWSHSELIEKASEKLRMVRLNPEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPT 182
Query: 506 SGMDPGAR-RFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFT 556
S +D + + E +I +H++ L K+ ++ G
Sbjct: 183 SALDVLTQAHIIQLLKELKKMLKITLIFVTHDIAVAAELADKVAVIYGGNLV 234
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 10/130 (7%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR-RFLWTCIERAVSEGRCVILTSHN 149
LSGG K+++ A+ALL +P ++ LDEPTS +D + + E +I +H+
Sbjct: 155 LSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKITLIFVTHD 214
Query: 150 MEECEALCTKLTIMVNGQ-------FTCLGSATHLKSKSM--ALPVSGNDLGRGDPVRSE 200
+ L K+ ++ G F + H ++ + ++ D+ + P+ +
Sbjct: 215 IAVAAELADKVAVIYGGNLVEYNSTFQIFKNPLHPYTRGLINSIMAVNADMSKVKPIPGD 274
Query: 201 LSRALNDGSG 210
LN SG
Sbjct: 275 PPSLLNPPSG 284
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 87/190 (45%), Gaps = 19/190 (10%)
Query: 365 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS-IRDSMDLVRSYIGY 423
++F + G+ L+G NG+GK+T +L +PT G + ++ + + +
Sbjct: 38 LTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAA 97
Query: 424 CPQFDALNDRLTPREHLEF----YSRVRNVPSVLLNTIVNESLNKFALGHYSDREV---- 475
Q L R + RE++ + + + +V + + ++ ++ F G+ D EV
Sbjct: 98 VGQEPLLFGR-SFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGY--DTEVGETG 154
Query: 476 RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG----ARRFLWTCIERAVSEGRCVI 531
L+ G ++ ++ A AL+ P L+ LD TS +D G +R L+ E A R V+
Sbjct: 155 NQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWA---SRTVL 211
Query: 532 LTSHNMEECE 541
L + + E
Sbjct: 212 LITQQLSLAE 221
>pdb|3QKU|A Chain A, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
pdb|3QKU|B Chain B, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
Length = 359
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 78 FALGHYSDREVRTLSGGNK------RKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 131
F + +R + LSGG + +L+ ++ L G L+ LDEPT +D RR L T
Sbjct: 256 FVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT 315
Query: 132 CIERAVSEGRCVILTSHNMEECEA 155
+ER + + VIL SH+ E +A
Sbjct: 316 IMERYLKKIPQVILVSHDEELKDA 339
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 465 FALGHYSDREVRTLSGGNK------RKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 518
F + +R + LSGG + +L+ ++ L G L+ LDEPT +D RR L T
Sbjct: 256 FVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT 315
Query: 519 CIERAVSEGRCVILTSHNMEECEA 542
+ER + + VIL SH+ E +A
Sbjct: 316 IMERYLKKIPQVILVSHDEELKDA 339
>pdb|3QKT|A Chain A, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|B Chain B, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|C Chain C, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|D Chain D, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
Length = 339
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 78 FALGHYSDREVRTLSGGNK------RKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 131
F + +R + LSGG + +L+ ++ L G L+ LDEPT +D RR L T
Sbjct: 236 FVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT 295
Query: 132 CIERAVSEGRCVILTSHNMEECEA 155
+ER + + VIL SH+ E +A
Sbjct: 296 IMERYLKKIPQVILVSHDEELKDA 319
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 465 FALGHYSDREVRTLSGGNK------RKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 518
F + +R + LSGG + +L+ ++ L G L+ LDEPT +D RR L T
Sbjct: 236 FVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT 295
Query: 519 CIERAVSEGRCVILTSHNMEECEA 542
+ER + + VIL SH+ E +A
Sbjct: 296 IMERYLKKIPQVILVSHDEELKDA 319
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 84/213 (39%), Gaps = 34/213 (15%)
Query: 365 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV------MNHSIRDSMDLVR 418
+S V GE L+G NGAGK+T + G TSG + + + L R
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGM---TSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 419 SYIG--YCPQFDALNDRLTPREH---LEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDR 473
+Y+ P F TP H L + + R ++N+ AL R
Sbjct: 76 AYLSQQQTPPFA------TPVWHYLTLHQHDKTR-------TELLNDVAGALALDDKLGR 122
Query: 474 EVRTLSGGNKRKLSTAIALL-----GNPP--LIFLDEPTSGMDPGARRFLWTCIERAVSE 526
LSGG +++ A +L NP L+ LD+P + +D + L + +
Sbjct: 123 STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQQ 182
Query: 527 GRCVILTSHNMEECEALCTKLTIMVNGQFTCLG 559
G ++++SH++ + ++ G+ G
Sbjct: 183 GLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASG 215
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 47/110 (42%), Gaps = 7/110 (6%)
Query: 70 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL-----GNPP--LIFLDEPTSGMD 122
++N+ AL R LSGG +++ A +L NP L+ LD+P + +D
Sbjct: 106 LLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLD 165
Query: 123 PGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLG 172
+ L + +G ++++SH++ + ++ G+ G
Sbjct: 166 VAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASG 215
>pdb|1II8|B Chain B, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 174
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 78 FALGHYSDREVRTLSGGNK------RKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 131
F + +R + LSGG + +L+ ++ L G L+ LDEPT +D RR L T
Sbjct: 71 FVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT 130
Query: 132 CIERAVSEGRCVILTSHNME 151
+ER + + VIL SH+ E
Sbjct: 131 IMERYLKKIPQVILVSHDEE 150
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 465 FALGHYSDREVRTLSGGNK------RKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 518
F + +R + LSGG + +L+ ++ L G L+ LDEPT +D RR L T
Sbjct: 71 FVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT 130
Query: 519 CIERAVSEGRCVILTSHNME 538
+ER + + VIL SH+ E
Sbjct: 131 IMERYLKKIPQVILVSHDEE 150
>pdb|1F2T|B Chain B, Crystal Structure Of Atp-free Rad50 Abc-atpase
pdb|1F2U|B Chain B, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2U|D Chain D, Crystal Structure Of Rad50 Abc-Atpase
Length = 148
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 78 FALGHYSDREVRTLSGGNK------RKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 131
F + +R + LSGG + +L+ ++ L G L+ LDEPT +D RR L T
Sbjct: 45 FVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT 104
Query: 132 CIERAVSEGRCVILTSHNME 151
+ER + + VIL SH+ E
Sbjct: 105 IMERYLKKIPQVILVSHDEE 124
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 465 FALGHYSDREVRTLSGGNK------RKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 518
F + +R + LSGG + +L+ ++ L G L+ LDEPT +D RR L T
Sbjct: 45 FVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT 104
Query: 519 CIERAVSEGRCVILTSHNME 538
+ER + + VIL SH+ E
Sbjct: 105 IMERYLKKIPQVILVSHDEE 124
>pdb|3QKR|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
pdb|3QKS|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
Length = 179
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 78 FALGHYSDREVRTLSGGNK------RKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 131
F + +R + LSGG + +L+ ++ L G L+ LDEPT +D RR L T
Sbjct: 76 FVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT 135
Query: 132 CIERAVSEGRCVILTSHNME 151
+ER + + VIL SH+ E
Sbjct: 136 IMERYLKKIPQVILVSHDEE 155
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 465 FALGHYSDREVRTLSGGNK------RKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 518
F + +R + LSGG + +L+ ++ L G L+ LDEPT +D RR L T
Sbjct: 76 FVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT 135
Query: 519 CIERAVSEGRCVILTSHNME 538
+ER + + VIL SH+ E
Sbjct: 136 IMERYLKKIPQVILVSHDEE 155
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 12/110 (10%)
Query: 47 LTPREHLEFYSRVRNVPSV--LLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIA 104
+T E LEF+ +N+PS+ L + + L LG + TLSGG +++ A
Sbjct: 767 MTVDEALEFF---KNIPSIKRTLQVLHDVGLGYVKLGQPAT----TLSGGEAQRIKLASE 819
Query: 105 LLGNPP---LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 151
L L LDEPT G+ R L + R V G VI+ HN++
Sbjct: 820 LRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD 869
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 12/110 (10%)
Query: 434 LTPREHLEFYSRVRNVPSV--LLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIA 491
+T E LEF+ +N+PS+ L + + L LG + TLSGG +++ A
Sbjct: 767 MTVDEALEFF---KNIPSIKRTLQVLHDVGLGYVKLGQPAT----TLSGGEAQRIKLASE 819
Query: 492 LLGNPP---LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 538
L L LDEPT G+ R L + R V G VI+ HN++
Sbjct: 820 LRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD 869
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 83/213 (38%), Gaps = 34/213 (15%)
Query: 365 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV------MNHSIRDSMDLVR 418
+S V GE L+G NGAGK+T + G TSG + + + L R
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGM---TSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 419 SYIG--YCPQFDALNDRLTPREH---LEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDR 473
+Y+ P F TP H L + + R ++N+ AL R
Sbjct: 76 AYLSQQQTPPFA------TPVWHYLTLHQHDKTR-------TELLNDVAGALALDDKLGR 122
Query: 474 EVRTLSGGNKRKLSTAIALL-----GNPP--LIFLDEPTSGMDPGARRFLWTCIERAVSE 526
LSGG +++ A +L NP L+ LD+P +D + L + +
Sbjct: 123 STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQQ 182
Query: 527 GRCVILTSHNMEECEALCTKLTIMVNGQFTCLG 559
G ++++SH++ + ++ G+ G
Sbjct: 183 GLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASG 215
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 46/110 (41%), Gaps = 7/110 (6%)
Query: 70 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL-----GNPP--LIFLDEPTSGMD 122
++N+ AL R LSGG +++ A +L NP L+ LD+P +D
Sbjct: 106 LLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLD 165
Query: 123 PGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLG 172
+ L + +G ++++SH++ + ++ G+ G
Sbjct: 166 VAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASG 215
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 358 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 404
+KP + I+F ++G NGAGK+T +LTG + PTSG Y
Sbjct: 685 SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVY 731
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 84 SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR-C 142
S +R LSGG K KL A P LI LDEPT+ +D R + +A+ E
Sbjct: 895 SHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD----RDSLGALSKALKEFEGG 950
Query: 143 VILTSHNMEECEALCTKLTIMVNGQFTCLG 172
VI+ +H+ E + L ++ + +G+ T G
Sbjct: 951 VIIITHSAEFTKNLTEEVWAVKDGRMTPSG 980
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 471 SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR-C 529
S +R LSGG K KL A P LI LDEPT+ +D R + +A+ E
Sbjct: 895 SHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD----RDSLGALSKALKEFEGG 950
Query: 530 VILTSHNMEECEALCTKLTIMVNGQFTCLG 559
VI+ +H+ E + L ++ + +G+ T G
Sbjct: 951 VIIITHSAEFTKNLTEEVWAVKDGRMTPSG 980
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 68/165 (41%), Gaps = 42/165 (25%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT-GAIK--PTSGN---AYVMN--- 407
G K +N+ + R +G+ G NG GK+T + + G + PT YV +
Sbjct: 446 GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDID 505
Query: 408 --HSIRDSMDLV-RSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNK 464
HS +D V S +G +A+ D+L F + +P
Sbjct: 506 GTHSDTSVLDFVFESGVGTK---EAIKDKLI---EFGFTDEMIAMP-------------- 545
Query: 465 FALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
+ LSGG K KL+ A A+L N ++ LDEPT+ +D
Sbjct: 546 ----------ISALSGGWKMKLALARAVLRNADILLLDEPTNHLD 580
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 88 VRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
+ LSGG K KL+ A A+L N ++ LDEPT+ +D
Sbjct: 546 ISALSGGWKMKLALARAVLRNADILLLDEPTNHLD 580
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 76/191 (39%), Gaps = 34/191 (17%)
Query: 365 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV------MNHSIRDSMDLVR 418
+S V GE L+G NGAGK+T G TSG + + + L R
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARXAGX---TSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 419 SYIGY--CPQFDALNDRLTPREH---LEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDR 473
+Y+ P F TP H L + + R ++N+ AL R
Sbjct: 76 AYLSQQQTPPFA------TPVWHYLTLHQHDKTRT-------ELLNDVAGALALDDKLGR 122
Query: 474 EVRTLSGGNKRKLSTAIALL-----GNPP--LIFLDEPTSGMDPGARRFLWTCIERAVSE 526
LSGG +++ A +L NP L+ LDEP + +D + L + +
Sbjct: 123 STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQ 182
Query: 527 GRCVILTSHNM 537
G ++ +SH++
Sbjct: 183 GLAIVXSSHDL 193
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 70 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL-----GNPP--LIFLDEPTSGMD 122
++N+ AL R LSGG +++ A +L NP L+ LDEP + +D
Sbjct: 106 LLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLD 165
Query: 123 PGARRFLWTCIERAVSEGRCVILTSHNM 150
+ L + +G ++ +SH++
Sbjct: 166 VAQQSALDKILSALCQQGLAIVXSSHDL 193
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 76/191 (39%), Gaps = 34/191 (17%)
Query: 365 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV------MNHSIRDSMDLVR 418
+S V GE L+G NGAGK+T G TSG + + + L R
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARXAGX---TSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 419 SYIGY--CPQFDALNDRLTPREH---LEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDR 473
+Y+ P F TP H L + + R ++N+ AL R
Sbjct: 76 AYLSQQQTPPFA------TPVWHYLTLHQHDKTRT-------ELLNDVAGALALDDKLGR 122
Query: 474 EVRTLSGGNKRKLSTAIALL-----GNPP--LIFLDEPTSGMDPGARRFLWTCIERAVSE 526
LSGG +++ A +L NP L+ LDEP + +D + L + +
Sbjct: 123 STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQQ 182
Query: 527 GRCVILTSHNM 537
G ++ +SH++
Sbjct: 183 GLAIVXSSHDL 193
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 70 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL-----GNPP--LIFLDEPTSGMD 122
++N+ AL R LSGG +++ A +L NP L+ LDEP + +D
Sbjct: 106 LLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLD 165
Query: 123 PGARRFLWTCIERAVSEGRCVILTSHNM 150
+ L + +G ++ +SH++
Sbjct: 166 VAQQSALDKILSALSQQGLAIVXSSHDL 193
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 358 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 404
+KP + I+F ++G NGAGK+T +LTG + PTSG Y
Sbjct: 679 SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVY 725
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 84 SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR-C 142
S +R LSGG K KL A P LI LDEPT+ +D R + +A+ E
Sbjct: 889 SHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD----RDSLGALSKALKEFEGG 944
Query: 143 VILTSHNMEECEALCTKLTIMVNGQFTCLG 172
VI+ +H+ E + L ++ + +G+ T G
Sbjct: 945 VIIITHSAEFTKNLTEEVWAVKDGRXTPSG 974
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 471 SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR-C 529
S +R LSGG K KL A P LI LDEPT+ +D R + +A+ E
Sbjct: 889 SHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD----RDSLGALSKALKEFEGG 944
Query: 530 VILTSHNMEECEALCTKLTIMVNGQFTCLG 559
VI+ +H+ E + L ++ + +G+ T G
Sbjct: 945 VIIITHSAEFTKNLTEEVWAVKDGRXTPSG 974
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 70/165 (42%), Gaps = 42/165 (25%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT-GAIK--PTSGN---AYVMN--- 407
G K +N+ + R +G+ G NG GK+T + + G + PT YV +
Sbjct: 440 GAKILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVDGFPTQEECRTVYVEHDID 499
Query: 408 --HSIRDSMDLV-RSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNK 464
HS +D V S +G +A+ D+L +EF +E +
Sbjct: 500 GTHSDTSVLDFVFESGVGTK---EAIKDKL-----IEF-------------GFTDEXIAX 538
Query: 465 FALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
+ LSGG K KL+ A A+L N ++ LDEPT+ +D
Sbjct: 539 ---------PISALSGGWKXKLALARAVLRNADILLLDEPTNHLD 574
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 88 VRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
+ LSGG K KL+ A A+L N ++ LDEPT+ +D
Sbjct: 540 ISALSGGWKXKLALARAVLRNADILLLDEPTNHLD 574
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 358 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 404
+KP + I+F ++G NGAGK+T +LTG + PTSG Y
Sbjct: 685 SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVY 731
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 84 SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR-C 142
S +R LSGG K KL A P LI LDEPT+ +D R + +A+ E
Sbjct: 895 SHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD----RDSLGALSKALKEFEGG 950
Query: 143 VILTSHNMEECEALCTKLTIMVNGQFTCLG 172
VI+ +H+ E + L ++ + +G+ T G
Sbjct: 951 VIIITHSAEFTKNLTEEVWAVKDGRXTPSG 980
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 471 SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR-C 529
S +R LSGG K KL A P LI LDEPT+ +D R + +A+ E
Sbjct: 895 SHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD----RDSLGALSKALKEFEGG 950
Query: 530 VILTSHNMEECEALCTKLTIMVNGQFTCLG 559
VI+ +H+ E + L ++ + +G+ T G
Sbjct: 951 VIIITHSAEFTKNLTEEVWAVKDGRXTPSG 980
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 70/165 (42%), Gaps = 42/165 (25%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT-GAIK--PTSGN---AYVMN--- 407
G K +N+ + R +G+ G NG GK+T + + G + PT YV +
Sbjct: 446 GAKILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVDGFPTQEECRTVYVEHDID 505
Query: 408 --HSIRDSMDLV-RSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNK 464
HS +D V S +G +A+ D+L +EF +E +
Sbjct: 506 GTHSDTSVLDFVFESGVGTK---EAIKDKL-----IEF-------------GFTDEXIAX 544
Query: 465 FALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
+ LSGG K KL+ A A+L N ++ LDEPT+ +D
Sbjct: 545 ---------PISALSGGWKXKLALARAVLRNADILLLDEPTNHLD 580
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 88 VRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
+ LSGG K KL+ A A+L N ++ LDEPT+ +D
Sbjct: 546 ISALSGGWKXKLALARAVLRNADILLLDEPTNHLD 580
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 89/219 (40%), Gaps = 15/219 (6%)
Query: 339 SGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP 398
SG + VK L Y ++G + ISF + G+ GLLG G+GK+T +
Sbjct: 16 SGGQMTVKDLTAKY--TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN- 72
Query: 399 TSGNAYVMNHSIRDSMDL--VRSYIGYCPQ-----FDALNDRLTPREHLEFYSRVRNVPS 451
T G + S DS+ L R G PQ L P +
Sbjct: 73 TEGEIQIDGVS-WDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADE 131
Query: 452 VLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG 511
V L +++ + K V LS G+K+ + A ++L ++ LDEP++ +DP
Sbjct: 132 VGLRSVIEQFPGKLDFVLVDGGCV--LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPV 189
Query: 512 ARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIM 550
+ + +++A ++ C ++ E C + ++
Sbjct: 190 TYQIIRRTLKQAFAD--CTVILCEARIEAMLECDQFLVI 226
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 90 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 149
LS G+K+ + A ++L ++ LDEP++ +DP + + +++A ++ C ++
Sbjct: 155 VLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFAD--CTVILCEA 212
Query: 150 MEECEALCTKLTIM 163
E C + ++
Sbjct: 213 RIEAMLECDQFLVI 226
>pdb|1US8|B Chain B, The Rad50 Signature Motif: Essential To Atp Binding And
Biological Function
Length = 144
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 78 FALGHYSDREVRTLSGGNK------RKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 131
F + +R + L GG + +L+ ++ L G L+ LDEPT +D RR L T
Sbjct: 41 FVVWEGKERPLTFLRGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT 100
Query: 132 CIERAVSEGRCVILTSHNME 151
+ER + + VIL SH+ E
Sbjct: 101 IMERYLKKIPQVILVSHDEE 120
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 465 FALGHYSDREVRTLSGGNK------RKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 518
F + +R + L GG + +L+ ++ L G L+ LDEPT +D RR L T
Sbjct: 41 FVVWEGKERPLTFLRGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT 100
Query: 519 CIERAVSEGRCVILTSHNME 538
+ER + + VIL SH+ E
Sbjct: 101 IMERYLKKIPQVILVSHDEE 120
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 82/187 (43%), Gaps = 13/187 (6%)
Query: 365 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD----SMDLVRSY 420
++F + GE L+G NG+GK+T +L +PT G + + + +
Sbjct: 36 LTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAA 95
Query: 421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYS--DREVRTL 478
+G PQ + + L + + + + + + ++ G+ + D L
Sbjct: 96 VGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQL 155
Query: 479 SGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR----RFLWTCIERAVSEGRCVILTS 534
SGG ++ ++ A AL+ P ++ LD+ TS +D ++ + L+ ER R V+L +
Sbjct: 156 SGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERY---SRSVLLIT 212
Query: 535 HNMEECE 541
++ E
Sbjct: 213 QHLSLVE 219
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 85 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR----RFLWTCIERAVSEG 140
D LSGG ++ ++ A AL+ P ++ LD+ TS +D ++ + L+ ER
Sbjct: 149 DEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERY---S 205
Query: 141 RCVILTSHNMEECE 154
R V+L + ++ E
Sbjct: 206 RSVLLITQHLSLVE 219
>pdb|3AUX|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|B Chain B, Crystal Structure Of Rad50 Bound To Adp
pdb|3AV0|B Chain B, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 371
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 56/126 (44%), Gaps = 25/126 (19%)
Query: 46 RLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHY-----SDREVRT---------- 90
R+ R + Y R + VP L+ +NE+ ++F L + D EVR
Sbjct: 222 RIFGRNGFQAYLREKYVP--LIQKYLNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTID 279
Query: 91 -LSGGNK------RKLSTAIALLGNP-PLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC 142
LSGG + +L+ A AL+GN I LDEPT +D R L + S +
Sbjct: 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQM 339
Query: 143 VILTSH 148
+I+T H
Sbjct: 340 IIITHH 345
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 56/126 (44%), Gaps = 25/126 (19%)
Query: 433 RLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHY-----SDREVRT---------- 477
R+ R + Y R + VP L+ +NE+ ++F L + D EVR
Sbjct: 222 RIFGRNGFQAYLREKYVP--LIQKYLNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTID 279
Query: 478 -LSGGNK------RKLSTAIALLGNP-PLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC 529
LSGG + +L+ A AL+GN I LDEPT +D R L + S +
Sbjct: 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQM 339
Query: 530 VILTSH 535
+I+T H
Sbjct: 340 IIITHH 345
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 51 EHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP 110
E EF+ + V L T+V+ L LG + TLSGG +++ A L
Sbjct: 829 EAAEFFEPIAGVHR-YLRTLVDVGLGYVRLGQPAP----TLSGGEAQRVKLASELQKRST 883
Query: 111 ---LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 151
+ LDEPT+G+ R L I V +G VI+ HN++
Sbjct: 884 GRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLD 927
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 438 EHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP 497
E EF+ + V L T+V+ L LG + TLSGG +++ A L
Sbjct: 829 EAAEFFEPIAGVHR-YLRTLVDVGLGYVRLGQPAP----TLSGGEAQRVKLASELQKRST 883
Query: 498 ---LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 538
+ LDEPT+G+ R L I V +G VI+ HN++
Sbjct: 884 GRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLD 927
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 8/108 (7%)
Query: 47 LTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL 106
+T + L+F++ + + L T+ + L LG + TLSGG +++ A L
Sbjct: 505 MTVEDALDFFASIPKIKRKL-ETLYDVGLGYMKLG----QPATTLSGGEAQRVKLAAELH 559
Query: 107 ---GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 151
L LDEPT+G+ L + R V G V++ HN++
Sbjct: 560 RRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD 607
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 8/108 (7%)
Query: 434 LTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL 493
+T + L+F++ + + L T+ + L LG + TLSGG +++ A L
Sbjct: 505 MTVEDALDFFASIPKIKRKL-ETLYDVGLGYMKLG----QPATTLSGGEAQRVKLAAELH 559
Query: 494 ---GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 538
L LDEPT+G+ L + R V G V++ HN++
Sbjct: 560 RRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD 607
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 8/108 (7%)
Query: 47 LTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL 106
+T + L+F++ + + L T+ + L LG + TLSGG +++ A L
Sbjct: 807 MTVEDALDFFASIPKIKRKL-ETLYDVGLGYMKLG----QPATTLSGGEAQRVKLAAELH 861
Query: 107 ---GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 151
L LDEPT+G+ L + R V G V++ HN++
Sbjct: 862 RRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD 909
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 8/108 (7%)
Query: 434 LTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL 493
+T + L+F++ + + L T+ + L LG + TLSGG +++ A L
Sbjct: 807 MTVEDALDFFASIPKIKRKL-ETLYDVGLGYMKLG----QPATTLSGGEAQRVKLAAELH 861
Query: 494 ---GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 538
L LDEPT+G+ L + R V G V++ HN++
Sbjct: 862 RRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD 909
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 19/121 (15%)
Query: 50 REHLEFYSRVRNVPSVLLNTIVN---------------ESLNKFALGHYS-DREVRTLSG 93
RE LE + +N+ VL T+ + E+L LG+ + TLSG
Sbjct: 789 RETLEVTYKGKNIAEVLDXTVEDALDFFASIPKIKRKLETLYDVGLGYXKLGQPATTLSG 848
Query: 94 GNKRKLSTAIALL---GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
G +++ A L L LDEPT+G+ L + R V G V++ HN+
Sbjct: 849 GEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNL 908
Query: 151 E 151
+
Sbjct: 909 D 909
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 19/121 (15%)
Query: 437 REHLEFYSRVRNVPSVLLNTIVN---------------ESLNKFALGHYS-DREVRTLSG 480
RE LE + +N+ VL T+ + E+L LG+ + TLSG
Sbjct: 789 RETLEVTYKGKNIAEVLDXTVEDALDFFASIPKIKRKLETLYDVGLGYXKLGQPATTLSG 848
Query: 481 GNKRKLSTAIALL---GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 537
G +++ A L L LDEPT+G+ L + R V G V++ HN+
Sbjct: 849 GEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNL 908
Query: 538 E 538
+
Sbjct: 909 D 909
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 86/219 (39%), Gaps = 38/219 (17%)
Query: 365 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM-----------NHSIRDS 413
++ V +GE L+G NGAGK+T K+L G + T ++ + R
Sbjct: 22 VNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKG 81
Query: 414 MDLVRSYIGYCPQFDALND-RLTPREHL-------EFYSRVRNVPSVLLNTIVNESLNKF 465
+ L Y P N RL + L EF+++V+ +L ++
Sbjct: 82 LFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELL-------DWDES 134
Query: 466 ALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS 525
L Y + SGG K++ L+ P LDE SG+D A + + R V+
Sbjct: 135 YLSRYLN---EGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALK----VVARGVN 187
Query: 526 EGR-----CVILTSHNMEECEALCTKLTIMVNGQFTCLG 559
R +++T + K+ +M++G+ G
Sbjct: 188 AMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATG 226
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 52/124 (41%), Gaps = 19/124 (15%)
Query: 51 EHLEFYSRVRNVPSVLLNTIVN---------------ESLNKFALGHYS-DREVRTLSGG 94
E LE R +N+ VL T+ ++L + LG+ + LSGG
Sbjct: 675 ETLEVEYRGKNIADVLALTVDEAHDFFADESAIFRALDTLREVGLGYLRLGQPATELSGG 734
Query: 95 NKR--KLSTAIALLGNPPLIF-LDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 151
+ KL+T + G ++ LDEPT+G+ P L + + V G VI H M+
Sbjct: 735 EAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQ 794
Query: 152 ECEA 155
A
Sbjct: 795 VVAA 798
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 52/124 (41%), Gaps = 19/124 (15%)
Query: 438 EHLEFYSRVRNVPSVLLNTIVN---------------ESLNKFALGHYS-DREVRTLSGG 481
E LE R +N+ VL T+ ++L + LG+ + LSGG
Sbjct: 675 ETLEVEYRGKNIADVLALTVDEAHDFFADESAIFRALDTLREVGLGYLRLGQPATELSGG 734
Query: 482 NKR--KLSTAIALLGNPPLIF-LDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 538
+ KL+T + G ++ LDEPT+G+ P L + + V G VI H M+
Sbjct: 735 EAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQ 794
Query: 539 ECEA 542
A
Sbjct: 795 VVAA 798
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 85 DREVRTLSGGNKRKLSTAIALLGN--PPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC 142
DR TLS G ++L A L N + LDEP++G+ P L + +E G
Sbjct: 374 DRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNS 433
Query: 143 VILTSHNME 151
+ + H+++
Sbjct: 434 LFVVEHDLD 442
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 472 DREVRTLSGGNKRKLSTAIALLGN--PPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC 529
DR TLS G ++L A L N + LDEP++G+ P L + +E G
Sbjct: 374 DRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNS 433
Query: 530 VILTSHNME 538
+ + H+++
Sbjct: 434 LFVVEHDLD 442
>pdb|1ZU4|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group P21212
pdb|1ZU5|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
pdb|1ZU5|B Chain B, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
Length = 320
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 344 VVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTF 389
+V+ L++ Y ++ T +I F R F L+G+NG GKTT+
Sbjct: 78 LVESLYQAYTDNDWTNKKY-RIDFKENRLNIFMLVGVNGTGKTTSL 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,566,957
Number of Sequences: 62578
Number of extensions: 672829
Number of successful extensions: 1918
Number of sequences better than 100.0: 109
Number of HSP's better than 100.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1562
Number of HSP's gapped (non-prelim): 270
length of query: 566
length of database: 14,973,337
effective HSP length: 104
effective length of query: 462
effective length of database: 8,465,225
effective search space: 3910933950
effective search space used: 3910933950
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)