Query psy7366
Match_columns 566
No_of_seqs 370 out of 2827
Neff 8.0
Searched_HMMs 29240
Date Sat Aug 17 00:53:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7366.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7366hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yqt_A RNAse L inhibitor; ATP- 100.0 1.9E-70 6.6E-75 601.1 35.0 411 1-564 58-491 (538)
2 3bk7_A ABC transporter ATP-bin 100.0 1.3E-69 4.6E-74 600.3 39.3 411 1-564 128-561 (607)
3 3ozx_A RNAse L inhibitor; ATP 100.0 2.4E-68 8.3E-73 583.0 35.0 414 1-563 36-474 (538)
4 2iw3_A Elongation factor 3A; a 100.0 1.5E-67 5.2E-72 602.0 34.2 400 1-560 472-981 (986)
5 3g5u_A MCG1178, multidrug resi 100.0 2.6E-67 9E-72 627.9 31.6 216 342-565 1030-1257(1284)
6 4f4c_A Multidrug resistance pr 100.0 2.4E-66 8.1E-71 621.1 35.4 216 342-565 1076-1303(1321)
7 3j16_B RLI1P; ribosome recycli 100.0 1.7E-65 5.8E-70 566.5 34.6 352 68-565 199-558 (608)
8 3ux8_A Excinuclease ABC, A sub 100.0 4.5E-64 1.5E-68 566.8 32.6 381 32-565 116-639 (670)
9 2r6f_A Excinuclease ABC subuni 100.0 2.1E-58 7.1E-63 522.6 37.3 368 45-565 450-941 (972)
10 2ygr_A Uvrabc system protein A 100.0 5.4E-58 1.9E-62 521.0 33.2 370 43-564 465-958 (993)
11 3pih_A Uvrabc system protein A 100.0 3.6E-56 1.2E-60 508.3 41.6 370 44-565 409-901 (916)
12 2vf7_A UVRA2, excinuclease ABC 100.0 4E-57 1.4E-61 512.3 33.5 350 66-565 355-826 (842)
13 3tui_C Methionine import ATP-b 100.0 4.1E-55 1.4E-59 452.8 28.9 224 341-564 23-251 (366)
14 3fvq_A Fe(3+) IONS import ATP- 100.0 2.1E-54 7.3E-59 447.3 26.4 219 342-564 4-226 (359)
15 2olj_A Amino acid ABC transpor 100.0 9.2E-54 3.1E-58 427.4 29.5 219 342-564 24-246 (263)
16 1vpl_A ABC transporter, ATP-bi 100.0 8.2E-54 2.8E-58 426.3 28.6 220 341-564 14-233 (256)
17 3tif_A Uncharacterized ABC tra 100.0 7E-54 2.4E-58 422.3 27.7 223 342-565 1-233 (235)
18 3gfo_A Cobalt import ATP-bindi 100.0 3.8E-54 1.3E-58 432.7 25.9 221 341-564 6-231 (275)
19 3rlf_A Maltose/maltodextrin im 100.0 6.8E-54 2.3E-58 446.4 28.2 218 342-564 3-221 (381)
20 1b0u_A Histidine permease; ABC 100.0 1.2E-53 4E-58 427.3 28.1 219 342-564 6-240 (262)
21 2pcj_A ABC transporter, lipopr 100.0 2.9E-53 9.8E-58 415.0 29.0 214 342-560 4-222 (224)
22 1z47_A CYSA, putative ABC-tran 100.0 5.1E-53 1.7E-57 437.3 28.6 219 341-564 13-233 (355)
23 4g1u_C Hemin import ATP-bindin 100.0 5.4E-53 1.8E-57 423.0 27.2 219 341-565 10-236 (266)
24 2it1_A 362AA long hypothetical 100.0 9.2E-53 3.2E-57 436.9 28.6 218 342-564 3-221 (362)
25 1g6h_A High-affinity branched- 100.0 3E-53 1E-57 423.4 24.0 219 341-563 6-239 (257)
26 1ji0_A ABC transporter; ATP bi 100.0 9.7E-53 3.3E-57 415.6 26.8 219 341-564 5-226 (240)
27 2yyz_A Sugar ABC transporter, 100.0 6.3E-53 2.1E-57 437.7 26.4 218 342-564 3-221 (359)
28 1g29_1 MALK, maltose transport 100.0 1.8E-52 6E-57 437.0 28.2 219 342-564 3-227 (372)
29 1oxx_K GLCV, glucose, ABC tran 100.0 6.7E-53 2.3E-57 437.6 24.4 219 342-564 3-228 (353)
30 1v43_A Sugar-binding transport 100.0 1.6E-52 5.6E-57 436.5 26.1 218 342-564 11-229 (372)
31 3d31_A Sulfate/molybdate ABC t 100.0 2.5E-52 8.6E-57 431.8 25.9 214 342-564 1-215 (348)
32 2onk_A Molybdate/tungstate ABC 100.0 4.8E-52 1.6E-56 409.9 22.1 213 342-564 1-214 (240)
33 2yz2_A Putative ABC transporte 100.0 1.9E-51 6.4E-56 412.4 24.0 218 342-564 2-225 (266)
34 2ihy_A ABC transporter, ATP-bi 100.0 1.1E-51 3.9E-56 416.0 21.9 220 341-564 20-250 (279)
35 2d2e_A SUFC protein; ABC-ATPas 100.0 2.1E-50 7.3E-55 401.2 22.6 217 342-562 3-229 (250)
36 2nq2_C Hypothetical ABC transp 100.0 1.5E-49 5E-54 395.4 28.0 207 342-564 4-215 (253)
37 2zu0_C Probable ATP-dependent 100.0 7.1E-50 2.4E-54 401.0 24.4 220 341-564 19-252 (267)
38 2qi9_C Vitamin B12 import ATP- 100.0 7.5E-50 2.5E-54 396.2 23.4 209 342-564 4-220 (249)
39 2ixe_A Antigen peptide transpo 100.0 5.8E-50 2E-54 402.3 22.2 219 341-564 15-243 (271)
40 2ff7_A Alpha-hemolysin translo 100.0 1.1E-49 3.8E-54 395.1 22.7 213 341-564 6-230 (247)
41 1sgw_A Putative ABC transporte 100.0 5.2E-50 1.8E-54 388.2 16.2 204 339-555 7-210 (214)
42 3nh6_A ATP-binding cassette SU 100.0 3.7E-49 1.3E-53 401.4 21.5 212 342-565 53-276 (306)
43 2pjz_A Hypothetical protein ST 100.0 5.5E-49 1.9E-53 392.9 20.9 211 342-565 1-214 (263)
44 1mv5_A LMRA, multidrug resista 100.0 3E-49 1E-53 391.4 16.9 212 342-564 1-224 (243)
45 2ghi_A Transport protein; mult 100.0 1.1E-47 3.9E-52 383.5 22.0 213 341-564 16-240 (260)
46 2pze_A Cystic fibrosis transme 100.0 9E-47 3.1E-51 370.2 21.7 200 342-565 6-217 (229)
47 3gd7_A Fusion complex of cysti 100.0 2.2E-47 7.4E-52 400.3 17.7 211 341-564 18-240 (390)
48 2cbz_A Multidrug resistance-as 100.0 2.4E-46 8.1E-51 369.0 18.4 202 342-564 3-215 (237)
49 2yl4_A ATP-binding cassette SU 100.0 1.2E-44 4E-49 403.0 23.7 216 343-565 342-569 (595)
50 3b5x_A Lipid A export ATP-bind 100.0 7.6E-45 2.6E-49 403.5 22.1 215 341-565 340-566 (582)
51 3b60_A Lipid A export ATP-bind 100.0 1.2E-44 3.9E-49 402.0 21.5 214 341-564 340-565 (582)
52 3qf4_A ABC transporter, ATP-bi 100.0 1.2E-44 4.2E-49 401.6 20.2 214 341-565 340-565 (587)
53 4a82_A Cystic fibrosis transme 100.0 1.7E-44 5.7E-49 400.2 20.3 214 341-565 338-563 (578)
54 3qf4_B Uncharacterized ABC tra 100.0 1.4E-44 4.9E-49 402.1 16.6 212 342-565 354-577 (598)
55 2bbs_A Cystic fibrosis transme 100.0 6.6E-44 2.3E-48 360.9 18.0 194 342-564 40-245 (290)
56 4f4c_A Multidrug resistance pr 100.0 1.4E-40 4.9E-45 398.3 19.8 214 342-565 415-640 (1321)
57 3g5u_A MCG1178, multidrug resi 100.0 1.8E-40 6E-45 396.7 19.5 217 342-564 387-611 (1284)
58 3bk7_A ABC transporter ATP-bin 100.0 3.6E-39 1.2E-43 357.0 15.5 195 346-553 95-304 (607)
59 1yqt_A RNAse L inhibitor; ATP- 100.0 3.3E-39 1.1E-43 353.6 14.9 198 343-553 21-234 (538)
60 3tui_C Methionine import ATP-b 100.0 4E-38 1.4E-42 325.7 19.8 180 1-180 65-254 (366)
61 3rlf_A Maltose/maltodextrin im 100.0 4.6E-38 1.6E-42 327.3 20.1 180 1-180 40-224 (381)
62 3fvq_A Fe(3+) IONS import ATP- 100.0 1.1E-37 3.7E-42 322.4 20.4 180 1-180 41-229 (359)
63 2iw3_A Elongation factor 3A; a 100.0 2.8E-37 9.7E-42 352.9 23.5 198 340-564 433-633 (986)
64 3gfo_A Cobalt import ATP-bindi 100.0 1.6E-37 5.6E-42 311.7 16.5 179 1-179 45-233 (275)
65 1z47_A CYSA, putative ABC-tran 100.0 5E-37 1.7E-41 317.6 20.4 180 1-180 52-236 (355)
66 2olj_A Amino acid ABC transpor 100.0 7.4E-37 2.5E-41 305.1 20.1 179 1-179 61-248 (263)
67 3ux8_A Excinuclease ABC, A sub 100.0 1.4E-37 4.8E-42 350.7 15.9 203 358-564 30-296 (670)
68 1b0u_A Histidine permease; ABC 100.0 7.4E-37 2.5E-41 305.6 19.2 179 1-179 43-242 (262)
69 2it1_A 362AA long hypothetical 100.0 7.9E-37 2.7E-41 317.2 20.0 180 1-180 40-224 (362)
70 1g29_1 MALK, maltose transport 100.0 1E-36 3.5E-41 318.0 20.2 180 1-180 40-230 (372)
71 2yyz_A Sugar ABC transporter, 100.0 7.5E-37 2.6E-41 317.0 18.5 180 1-180 40-224 (359)
72 1vpl_A ABC transporter, ATP-bi 100.0 1.5E-36 5.1E-41 302.0 19.2 179 1-179 52-235 (256)
73 2pcj_A ABC transporter, lipopr 100.0 1.7E-36 5.8E-41 296.1 19.3 172 1-173 41-222 (224)
74 1oxx_K GLCV, glucose, ABC tran 100.0 9.5E-37 3.3E-41 316.3 18.0 180 1-180 42-231 (353)
75 3tif_A Uncharacterized ABC tra 100.0 2.1E-36 7.1E-41 297.6 18.4 176 1-177 42-232 (235)
76 1v43_A Sugar-binding transport 100.0 1.2E-36 4.1E-41 317.0 17.5 180 1-180 48-232 (372)
77 2onk_A Molybdate/tungstate ABC 100.0 1.2E-36 4.2E-41 299.8 15.7 177 1-179 35-216 (240)
78 1tf7_A KAIC; homohexamer, hexa 100.0 8.8E-40 3E-44 358.7 -8.9 358 1-554 50-444 (525)
79 1g6h_A High-affinity branched- 100.0 2E-36 6.8E-41 301.8 16.1 176 1-176 44-239 (257)
80 3d31_A Sulfate/molybdate ABC t 100.0 3.8E-36 1.3E-40 310.8 17.3 176 1-179 37-217 (348)
81 1ji0_A ABC transporter; ATP bi 100.0 6.8E-36 2.3E-40 295.0 16.9 177 1-178 43-227 (240)
82 4g1u_C Hemin import ATP-bindin 100.0 1.9E-35 6.7E-40 295.7 17.8 176 1-178 48-236 (266)
83 3j16_B RLI1P; ribosome recycli 100.0 8.5E-36 2.9E-40 329.4 16.2 197 347-554 82-298 (608)
84 2yz2_A Putative ABC transporte 100.0 1.7E-35 6E-40 296.4 16.6 179 1-180 44-228 (266)
85 2nq2_C Hypothetical ABC transp 100.0 8.8E-35 3E-39 288.9 19.2 170 1-178 42-216 (253)
86 3ozx_A RNAse L inhibitor; ATP 100.0 2.7E-35 9.2E-40 321.9 14.2 192 347-554 4-214 (538)
87 2ihy_A ABC transporter, ATP-bi 100.0 5.8E-35 2E-39 294.1 12.5 178 1-178 58-251 (279)
88 2qi9_C Vitamin B12 import ATP- 100.0 2E-34 7E-39 285.4 15.4 173 1-178 37-221 (249)
89 2d2e_A SUFC protein; ABC-ATPas 100.0 4.6E-34 1.6E-38 283.6 14.6 176 1-176 40-230 (250)
90 2zu0_C Probable ATP-dependent 100.0 1.2E-33 4.2E-38 283.0 16.6 178 1-178 57-253 (267)
91 2pjz_A Hypothetical protein ST 100.0 1.9E-33 6.6E-38 280.5 15.4 170 1-180 41-216 (263)
92 2ixe_A Antigen peptide transpo 100.0 2.6E-33 8.9E-38 281.2 14.4 176 1-179 56-245 (271)
93 1sgw_A Putative ABC transporte 100.0 1.8E-33 6.1E-38 272.2 9.3 162 1-168 46-210 (214)
94 2ff7_A Alpha-hemolysin translo 100.0 1E-32 3.5E-37 273.2 14.7 170 1-179 46-232 (247)
95 3nh6_A ATP-binding cassette SU 100.0 1.3E-32 4.5E-37 279.6 13.3 171 1-180 91-278 (306)
96 1mv5_A LMRA, multidrug resista 100.0 2.2E-32 7.6E-37 270.4 12.3 171 1-179 39-226 (243)
97 2ghi_A Transport protein; mult 100.0 1.2E-31 4E-36 267.6 14.1 170 1-179 57-242 (260)
98 2pze_A Cystic fibrosis transme 100.0 4.5E-31 1.6E-35 258.6 14.0 162 1-179 45-218 (229)
99 3gd7_A Fusion complex of cysti 100.0 1.3E-31 4.5E-36 280.7 9.9 169 1-180 58-243 (390)
100 4aby_A DNA repair protein RECN 100.0 1.9E-30 6.5E-35 276.4 17.9 196 360-559 49-381 (415)
101 2npi_A Protein CLP1; CLP1-PCF1 100.0 4.2E-34 1.4E-38 306.6 -11.0 195 341-564 117-336 (460)
102 2cbz_A Multidrug resistance-as 100.0 9.7E-31 3.3E-35 257.5 11.6 165 1-179 42-217 (237)
103 3b5x_A Lipid A export ATP-bind 100.0 8.1E-30 2.8E-34 282.8 15.2 171 1-179 380-567 (582)
104 3b60_A Lipid A export ATP-bind 100.0 9.9E-30 3.4E-34 282.1 14.0 172 1-180 380-568 (582)
105 2yl4_A ATP-binding cassette SU 100.0 1.2E-29 4.2E-34 282.1 14.4 173 1-179 381-570 (595)
106 3qf4_A ABC transporter, ATP-bi 100.0 7.6E-30 2.6E-34 282.9 11.9 175 1-180 380-567 (587)
107 2bbs_A Cystic fibrosis transme 100.0 2.7E-29 9.3E-34 253.8 13.7 160 1-179 75-247 (290)
108 3qf4_B Uncharacterized ABC tra 100.0 1.5E-29 5E-34 281.3 12.4 171 1-180 392-579 (598)
109 4a82_A Cystic fibrosis transme 100.0 1.9E-29 6.5E-34 279.5 12.7 171 1-180 378-565 (578)
110 3qf7_A RAD50; ABC-ATPase, ATPa 100.0 2.3E-28 7.9E-33 255.7 17.8 85 472-557 274-364 (365)
111 3b85_A Phosphate starvation-in 100.0 8.1E-32 2.8E-36 259.6 -13.0 155 358-554 12-171 (208)
112 1e69_A Chromosome segregation 99.9 2.7E-27 9.3E-32 243.7 14.2 84 470-555 212-301 (322)
113 4gp7_A Metallophosphoesterase; 99.9 4.9E-28 1.7E-32 226.3 3.8 147 364-542 1-164 (171)
114 1tq4_A IIGP1, interferon-induc 99.9 2.7E-29 9.2E-34 264.8 -11.5 170 359-548 36-248 (413)
115 1znw_A Guanylate kinase, GMP k 99.9 5.8E-30 2E-34 246.8 -15.5 178 358-551 8-202 (207)
116 1ye8_A Protein THEP1, hypothet 99.9 3.6E-27 1.2E-31 221.8 2.3 147 374-557 2-159 (178)
117 3b9q_A Chloroplast SRP recepto 99.9 4.1E-27 1.4E-31 239.5 0.3 175 362-555 90-284 (302)
118 2og2_A Putative signal recogni 99.9 6.9E-26 2.4E-30 234.8 1.5 174 363-555 148-341 (359)
119 2r6f_A Excinuclease ABC subuni 99.9 4.5E-24 1.5E-28 242.3 15.6 127 46-179 806-942 (972)
120 3pih_A Uvrabc system protein A 99.9 9.1E-24 3.1E-28 241.5 18.2 127 47-180 767-903 (916)
121 2dpy_A FLII, flagellum-specifi 99.9 1.5E-27 5.2E-32 254.3 -13.6 194 341-564 130-342 (438)
122 2v9p_A Replication protein E1; 99.9 6.7E-29 2.3E-33 251.6 -23.9 162 343-564 102-264 (305)
123 2ygr_A Uvrabc system protein A 99.9 1.5E-23 5E-28 239.0 16.2 126 47-179 825-960 (993)
124 2vf7_A UVRA2, excinuclease ABC 99.9 6.9E-23 2.3E-27 232.4 15.5 110 69-179 708-827 (842)
125 1z6g_A Guanylate kinase; struc 99.9 2.6E-27 8.8E-32 230.3 -19.8 179 359-549 10-206 (218)
126 1tf7_A KAIC; homohexamer, hexa 99.9 5.1E-26 1.8E-30 249.3 -12.7 181 342-552 12-209 (525)
127 3aez_A Pantothenate kinase; tr 99.9 4.2E-26 1.4E-30 233.1 -12.9 180 340-552 41-244 (312)
128 2o8b_B DNA mismatch repair pro 99.9 1E-23 3.5E-28 245.0 4.4 167 341-556 749-930 (1022)
129 2obl_A ESCN; ATPase, hydrolase 99.9 9.5E-25 3.3E-29 226.0 -4.2 194 341-564 44-253 (347)
130 3sop_A Neuronal-specific septi 99.9 3.4E-25 1.2E-29 221.9 -7.3 148 374-538 4-151 (270)
131 3qkt_A DNA double-strand break 99.9 6.3E-22 2.1E-26 205.1 16.1 83 471-554 242-332 (339)
132 2pt7_A CAG-ALFA; ATPase, prote 99.9 4E-24 1.4E-28 220.4 -0.5 132 361-554 160-291 (330)
133 2o5v_A DNA replication and rep 99.9 5.7E-22 1.9E-26 205.7 15.3 86 472-564 259-354 (359)
134 1cr0_A DNA primase/helicase; R 99.9 2.8E-23 9.5E-28 211.0 4.9 184 359-555 22-237 (296)
135 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 3.1E-21 1.1E-25 201.6 15.6 86 84-170 273-364 (365)
136 4ad8_A DNA repair protein RECN 99.9 2.3E-21 7.9E-26 212.0 14.9 79 473-553 392-473 (517)
137 2jeo_A Uridine-cytidine kinase 99.8 3.9E-23 1.3E-27 204.3 -0.5 168 357-554 10-180 (245)
138 2ehv_A Hypothetical protein PH 99.8 8E-23 2.7E-27 201.6 0.7 164 368-551 26-206 (251)
139 3thx_A DNA mismatch repair pro 99.8 1.4E-21 5E-26 224.3 7.3 168 342-564 631-811 (934)
140 2npi_A Protein CLP1; CLP1-PCF1 99.8 2.2E-23 7.6E-28 223.4 -7.7 163 1-178 149-337 (460)
141 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 1.4E-20 4.7E-25 171.0 11.2 84 84-168 51-142 (148)
142 4aby_A DNA repair protein RECN 99.8 1.1E-20 3.7E-25 201.0 11.8 83 87-171 291-380 (415)
143 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 4.4E-20 1.5E-24 167.6 11.5 84 471-555 51-142 (148)
144 4a74_A DNA repair and recombin 99.8 5.5E-21 1.9E-25 185.9 2.3 148 368-553 21-200 (231)
145 2eyu_A Twitching motility prot 99.8 4.2E-21 1.4E-25 191.3 1.5 132 360-552 15-147 (261)
146 3thx_B DNA mismatch repair pro 99.8 2.3E-20 7.9E-25 213.8 5.2 145 358-547 659-805 (918)
147 2qnr_A Septin-2, protein NEDD5 99.8 6.4E-22 2.2E-26 201.5 -7.2 164 346-538 2-168 (301)
148 1ewq_A DNA mismatch repair pro 99.8 1.8E-20 6E-25 211.7 3.4 160 342-558 550-716 (765)
149 3asz_A Uridine kinase; cytidin 99.8 4E-22 1.4E-26 192.0 -9.0 146 369-538 3-162 (211)
150 1w1w_A Structural maintenance 99.8 7.6E-19 2.6E-23 187.8 13.9 78 473-551 329-410 (430)
151 1rj9_A FTSY, signal recognitio 99.8 7.4E-21 2.5E-25 193.4 -2.6 150 371-537 101-258 (304)
152 3szr_A Interferon-induced GTP- 99.8 3.1E-21 1.1E-25 214.3 -7.4 190 342-563 10-234 (608)
153 1wb9_A DNA mismatch repair pro 99.8 1.2E-19 3.9E-24 206.2 3.2 156 358-560 594-752 (800)
154 2i3b_A HCR-ntpase, human cance 99.8 2.9E-21 9.8E-26 183.1 -8.4 158 372-558 1-168 (189)
155 2w0m_A SSO2452; RECA, SSPF, un 99.8 5.2E-20 1.8E-24 179.0 -0.3 169 359-553 9-192 (235)
156 1ye8_A Protein THEP1, hypothet 99.7 1.6E-19 5.5E-24 169.5 1.8 136 1-170 11-159 (178)
157 1e69_A Chromosome segregation 99.7 1.4E-18 4.8E-23 178.6 8.6 84 84-169 213-302 (322)
158 1pzn_A RAD51, DNA repair and r 99.7 6.9E-20 2.4E-24 190.2 -2.1 163 360-559 118-308 (349)
159 3b85_A Phosphate starvation-in 99.7 5.5E-20 1.9E-24 176.9 -5.3 131 1-167 33-171 (208)
160 1pui_A ENGB, probable GTP-bind 99.7 6.2E-20 2.1E-24 175.9 -5.0 174 342-529 3-202 (210)
161 1nlf_A Regulatory protein REPA 99.7 2.2E-17 7.4E-22 166.1 11.9 154 368-541 26-185 (279)
162 3jvv_A Twitching mobility prot 99.7 2.4E-18 8.2E-23 178.5 2.5 135 360-553 104-246 (356)
163 4gp7_A Metallophosphoesterase; 99.7 3.9E-18 1.3E-22 158.9 1.5 80 78-159 72-167 (171)
164 2qag_C Septin-7; cell cycle, c 99.7 1E-18 3.6E-23 184.6 -3.0 164 342-538 11-178 (418)
165 1s96_A Guanylate kinase, GMP k 99.7 1.2E-18 4.1E-23 168.9 -3.5 141 368-564 12-158 (219)
166 3qkt_A DNA double-strand break 99.7 6.2E-17 2.1E-21 167.5 9.0 80 84-164 242-327 (339)
167 1lw7_A Transcriptional regulat 99.7 4.7E-21 1.6E-25 200.5 -22.5 176 362-565 158-354 (365)
168 1znw_A Guanylate kinase, GMP k 99.7 2.9E-20 9.8E-25 178.9 -15.6 151 1-164 31-202 (207)
169 2bdt_A BH3686; alpha-beta prot 99.7 5.8E-21 2E-25 180.7 -21.6 172 372-564 2-182 (189)
170 3kta_B Chromosome segregation 99.6 7E-16 2.4E-20 143.6 12.3 83 84-168 58-146 (173)
171 1tq4_A IIGP1, interferon-induc 99.6 2.4E-18 8.2E-23 181.3 -5.4 145 1-161 80-248 (413)
172 2qag_B Septin-6, protein NEDD5 99.6 3.1E-18 1E-22 180.4 -4.6 179 342-537 16-219 (427)
173 2bbw_A Adenylate kinase 4, AK4 99.6 6.6E-19 2.3E-23 173.9 -10.4 144 371-526 26-199 (246)
174 3kta_B Chromosome segregation 99.6 1.2E-15 4.2E-20 141.9 11.7 82 471-554 58-145 (173)
175 4ad8_A DNA repair protein RECN 99.6 5.6E-16 1.9E-20 169.3 10.5 80 86-167 392-474 (517)
176 2cvh_A DNA repair and recombin 99.6 5.1E-16 1.7E-20 149.6 8.5 153 360-553 7-185 (220)
177 1n0w_A DNA repair protein RAD5 99.6 2E-16 7E-21 154.8 3.9 146 368-553 20-209 (243)
178 1zp6_A Hypothetical protein AT 99.6 2.2E-18 7.7E-23 162.8 -9.8 152 368-534 5-158 (191)
179 2o5v_A DNA replication and rep 99.6 7.7E-16 2.6E-20 159.7 8.0 86 85-177 259-354 (359)
180 2ewv_A Twitching motility prot 99.6 1.1E-16 3.9E-21 167.3 1.3 129 361-550 127-256 (372)
181 3e70_C DPA, signal recognition 99.6 5.2E-16 1.8E-20 159.2 4.4 166 368-556 125-307 (328)
182 1nij_A Hypothetical protein YJ 99.6 5.6E-19 1.9E-23 181.2 -18.0 160 373-545 5-197 (318)
183 2yhs_A FTSY, cell division pro 99.6 2E-16 7E-21 168.5 0.6 158 362-539 283-450 (503)
184 1htw_A HI0065; nucleotide-bind 99.6 1.6E-17 5.3E-22 152.7 -8.0 87 346-442 11-97 (158)
185 2gza_A Type IV secretion syste 99.6 5.1E-16 1.8E-20 161.8 1.4 138 361-553 164-302 (361)
186 2rcn_A Probable GTPase ENGC; Y 99.6 1.6E-15 5.5E-20 156.6 5.0 122 361-492 205-328 (358)
187 2qm8_A GTPase/ATPase; G protei 99.5 2.4E-18 8.2E-23 177.7 -16.4 174 343-525 30-260 (337)
188 3sop_A Neuronal-specific septi 99.5 8.8E-17 3E-21 160.8 -4.9 137 1-152 13-152 (270)
189 3b9q_A Chloroplast SRP recepto 99.5 5.1E-16 1.7E-20 157.7 -0.0 149 1-168 111-284 (302)
190 3auy_A DNA double-strand break 99.5 4.7E-14 1.6E-18 147.6 12.5 78 86-165 276-360 (371)
191 2yv5_A YJEQ protein; hydrolase 99.5 6.3E-16 2.2E-20 157.2 -2.8 121 368-490 161-300 (302)
192 1w1w_A Structural maintenance 99.5 8.1E-14 2.8E-18 148.7 11.5 79 85-164 328-410 (430)
193 2og2_A Putative signal recogni 99.5 4.2E-15 1.4E-19 153.9 1.2 149 1-168 168-341 (359)
194 3auy_A DNA double-strand break 99.5 1.3E-13 4.3E-18 144.3 12.3 80 473-554 276-363 (371)
195 3ec2_A DNA replication protein 99.5 6.1E-15 2.1E-19 138.0 2.0 113 366-539 32-145 (180)
196 2v9p_A Replication protein E1; 99.5 4.9E-17 1.7E-21 164.6 -13.3 127 1-177 137-264 (305)
197 1p9r_A General secretion pathw 99.5 8.9E-17 3.1E-21 170.0 -13.6 148 343-501 144-315 (418)
198 2oap_1 GSPE-2, type II secreti 99.5 2E-16 6.7E-21 171.7 -11.5 172 359-546 247-459 (511)
199 3lda_A DNA repair protein RAD5 99.5 2.7E-14 9.2E-19 150.2 5.0 146 368-554 174-364 (400)
200 2f1r_A Molybdopterin-guanine d 99.4 4.1E-16 1.4E-20 145.1 -8.3 138 373-528 3-164 (171)
201 2o8b_B DNA mismatch repair pro 99.4 1.3E-14 4.4E-19 168.8 1.9 133 1-174 800-937 (1022)
202 2kjq_A DNAA-related protein; s 99.4 7.9E-14 2.7E-18 126.7 6.3 87 371-536 35-124 (149)
203 3aez_A Pantothenate kinase; tr 99.4 2.8E-15 9.5E-20 152.9 -4.8 144 1-166 101-245 (312)
204 1ni3_A YCHF GTPase, YCHF GTP-b 99.4 3.2E-16 1.1E-20 164.0 -12.3 169 368-561 16-208 (392)
205 1udx_A The GTP-binding protein 99.4 3.6E-14 1.2E-18 149.8 2.8 153 362-541 147-313 (416)
206 1in4_A RUVB, holliday junction 99.4 1.8E-16 6E-21 163.7 -15.4 176 343-546 19-211 (334)
207 1cr0_A DNA primase/helicase; R 99.4 1.1E-13 3.7E-18 140.2 5.2 157 1-168 46-237 (296)
208 1sxj_E Activator 1 40 kDa subu 99.4 2.6E-13 8.9E-18 140.5 6.9 137 375-539 39-176 (354)
209 1ls1_A Signal recognition part 99.4 2.1E-14 7.1E-19 145.4 -2.5 128 363-534 91-219 (295)
210 1sq5_A Pantothenate kinase; P- 99.4 4E-15 1.4E-19 151.8 -8.7 139 341-509 36-198 (308)
211 1odf_A YGR205W, hypothetical 3 99.3 2.7E-14 9.2E-19 144.1 -3.4 126 370-511 29-168 (290)
212 1u0l_A Probable GTPase ENGC; p 99.3 2.5E-14 8.5E-19 145.4 -4.1 110 367-480 164-294 (301)
213 2pt7_A CAG-ALFA; ATPase, prote 99.3 3.4E-13 1.2E-17 138.6 3.1 67 93-167 225-291 (330)
214 2x8a_A Nuclear valosin-contain 99.3 5.6E-16 1.9E-20 155.4 -17.5 144 359-520 33-190 (274)
215 3asz_A Uridine kinase; cytidin 99.3 8.8E-15 3E-19 140.4 -8.9 131 1-150 17-161 (211)
216 2ehv_A Hypothetical protein PH 99.3 8.7E-14 3E-18 136.6 -2.0 74 92-165 119-207 (251)
217 2dpy_A FLII, flagellum-specifi 99.3 2.1E-14 7.2E-19 152.9 -7.2 152 1-178 168-343 (438)
218 1t9h_A YLOQ, probable GTPase E 99.3 7.7E-14 2.6E-18 141.4 -3.0 118 367-485 168-303 (307)
219 1z6g_A Guanylate kinase; struc 99.3 6.4E-16 2.2E-20 149.7 -17.9 152 1-161 34-205 (218)
220 3thx_A DNA mismatch repair pro 99.3 2.7E-13 9.4E-18 155.9 0.7 88 88-176 719-810 (934)
221 1lvg_A Guanylate kinase, GMP k 99.3 1E-15 3.5E-20 146.0 -19.1 152 370-551 2-172 (198)
222 3c8u_A Fructokinase; YP_612366 99.2 2.4E-14 8.1E-19 137.4 -10.1 114 369-505 19-140 (208)
223 1nlf_A Regulatory protein REPA 99.2 7.2E-12 2.5E-16 125.7 6.8 139 1-154 41-185 (279)
224 2dr3_A UPF0273 protein PH0284; 99.2 2.6E-12 8.7E-17 125.7 1.5 59 494-552 127-196 (247)
225 2px0_A Flagellar biosynthesis 99.2 1.8E-11 6E-16 123.9 7.6 141 370-558 103-247 (296)
226 2jeo_A Uridine-cytidine kinase 99.2 3E-12 1E-16 126.0 1.7 142 1-167 36-180 (245)
227 4a74_A DNA repair and recombin 99.2 3.4E-13 1.2E-17 130.6 -5.3 61 107-167 124-201 (231)
228 1vma_A Cell division protein F 99.2 1.4E-11 4.8E-16 125.0 6.3 99 364-506 96-197 (306)
229 3lnc_A Guanylate kinase, GMP k 99.2 7.5E-15 2.6E-19 143.2 -17.8 178 360-548 15-206 (231)
230 1ewq_A DNA mismatch repair pro 99.2 4.8E-12 1.7E-16 143.0 2.1 123 1-170 587-715 (765)
231 3thx_B DNA mismatch repair pro 99.1 5.2E-12 1.8E-16 144.9 1.0 90 78-169 723-815 (918)
232 3tr0_A Guanylate kinase, GMP k 99.1 2.6E-12 8.8E-17 122.3 -1.3 126 366-504 1-127 (205)
233 1wb9_A DNA mismatch repair pro 99.1 1.1E-11 3.7E-16 140.9 2.7 131 1-171 618-750 (800)
234 2r6a_A DNAB helicase, replicat 99.1 1.7E-10 5.9E-15 123.7 10.2 180 359-555 190-401 (454)
235 2obl_A ESCN; ATPase, hydrolase 99.1 3.9E-12 1.3E-16 131.4 -3.2 80 86-177 167-253 (347)
236 2qnr_A Septin-2, protein NEDD5 99.1 1.1E-12 3.7E-17 133.3 -7.6 135 1-151 29-168 (301)
237 2zr9_A Protein RECA, recombina 99.1 1.6E-10 5.4E-15 119.5 8.4 145 368-560 57-237 (349)
238 2w0m_A SSO2452; RECA, SSPF, un 99.1 8.1E-11 2.8E-15 113.7 5.8 78 90-167 103-193 (235)
239 3euj_A Chromosome partition pr 99.1 5.1E-11 1.7E-15 127.5 4.6 51 360-411 18-68 (483)
240 3szr_A Interferon-induced GTP- 99.1 5.6E-12 1.9E-16 139.9 -3.4 148 1-175 56-233 (608)
241 2ius_A DNA translocase FTSK; n 99.1 6.3E-12 2.2E-16 135.4 -3.1 173 364-549 159-361 (512)
242 3jvv_A Twitching mobility prot 99.0 5.3E-11 1.8E-15 123.3 1.8 59 100-166 188-246 (356)
243 2i3b_A HCR-ntpase, human cance 99.0 5.7E-12 2E-16 119.0 -5.4 144 1-171 12-168 (189)
244 2cvh_A DNA repair and recombin 99.0 1.2E-09 3.9E-14 104.8 10.5 79 88-166 82-185 (220)
245 1rj9_A FTSY, signal recognitio 99.0 1.4E-11 4.8E-16 125.0 -3.6 133 1-150 113-258 (304)
246 1iy2_A ATP-dependent metallopr 99.0 3E-13 1E-17 135.7 -17.2 127 359-504 62-194 (278)
247 1pzn_A RAD51, DNA repair and r 98.9 2.9E-11 1E-15 125.2 -3.8 80 92-171 208-307 (349)
248 1qhl_A Protein (cell division 98.9 2.7E-11 9.1E-16 117.5 -3.9 74 342-427 9-91 (227)
249 1ixz_A ATP-dependent metallopr 98.9 7.8E-13 2.7E-17 130.6 -15.2 141 359-518 38-196 (254)
250 2eyu_A Twitching motility prot 98.9 2.1E-10 7.2E-15 113.8 1.7 60 98-165 88-147 (261)
251 3k1j_A LON protease, ATP-depen 98.9 2.9E-11 1E-15 134.3 -6.6 158 358-522 46-227 (604)
252 1oix_A RAS-related protein RAB 98.8 1.4E-10 4.9E-15 109.2 -3.1 36 485-522 153-188 (191)
253 2bdt_A BH3686; alpha-beta prot 98.8 3.8E-13 1.3E-17 126.7 -21.8 160 1-177 13-182 (189)
254 2qag_C Septin-7; cell cycle, c 98.8 3.4E-10 1.2E-14 119.5 -2.4 132 1-152 42-179 (418)
255 3hr8_A Protein RECA; alpha and 98.8 7.6E-09 2.6E-13 106.8 7.4 147 368-552 57-229 (356)
256 1s96_A Guanylate kinase, GMP k 98.7 1.9E-10 6.7E-15 111.0 -5.5 125 1-179 27-160 (219)
257 4eun_A Thermoresistant glucoki 98.7 7.3E-10 2.5E-14 105.2 -2.4 73 366-442 23-95 (200)
258 2qag_B Septin-6, protein NEDD5 98.7 2.8E-09 9.6E-14 112.2 -0.0 144 1-149 53-218 (427)
259 2f9l_A RAB11B, member RAS onco 98.6 5.9E-10 2E-14 105.4 -5.6 36 486-523 130-165 (199)
260 2qtf_A Protein HFLX, GTP-bindi 98.6 3.6E-09 1.2E-13 109.9 -0.3 139 374-525 181-353 (364)
261 1svm_A Large T antigen; AAA+ f 98.6 1.5E-10 5.1E-15 120.6 -13.0 136 359-506 156-312 (377)
262 2bbw_A Adenylate kinase 4, AK4 98.5 1.9E-10 6.7E-15 112.9 -12.3 130 1-140 38-200 (246)
263 2xau_A PRE-mRNA-splicing facto 98.5 8E-08 2.7E-12 109.4 7.1 76 472-547 185-262 (773)
264 1zu4_A FTSY; GTPase, signal re 98.5 2.8E-08 9.7E-13 101.3 2.4 81 362-442 95-186 (320)
265 1jjv_A Dephospho-COA kinase; P 98.5 2E-08 6.9E-13 95.4 0.9 127 374-552 4-132 (206)
266 2ce7_A Cell division protein F 98.5 2E-07 6.7E-12 100.0 8.3 61 480-540 93-167 (476)
267 3cr8_A Sulfate adenylyltranfer 98.5 5.5E-09 1.9E-13 114.0 -4.2 43 368-410 365-409 (552)
268 2e87_A Hypothetical protein PH 98.5 8.6E-08 2.9E-12 99.4 5.0 125 371-538 166-293 (357)
269 1n0w_A DNA repair protein RAD5 98.5 9.1E-07 3.1E-11 85.7 12.1 60 107-166 118-209 (243)
270 1lw7_A Transcriptional regulat 98.5 2.2E-10 7.5E-15 119.4 -14.7 79 85-164 253-342 (365)
271 1nij_A Hypothetical protein YJ 98.5 1.4E-10 4.8E-15 118.6 -15.9 113 33-158 76-197 (318)
272 4e22_A Cytidylate kinase; P-lo 98.5 2E-08 6.8E-13 99.0 0.1 58 370-427 25-95 (252)
273 3kta_A Chromosome segregation 98.4 1.4E-07 4.9E-12 87.6 4.9 119 363-487 18-152 (182)
274 3nwj_A ATSK2; P loop, shikimat 98.4 1.6E-08 5.4E-13 99.5 -1.8 52 342-396 17-72 (250)
275 2j41_A Guanylate kinase; GMP, 98.4 7.2E-08 2.5E-12 91.3 2.8 35 367-401 1-35 (207)
276 2ewv_A Twitching motility prot 98.4 6.3E-08 2.2E-12 100.9 2.4 59 98-164 199-257 (372)
277 2dhr_A FTSH; AAA+ protein, hex 98.4 1.8E-09 6.1E-14 116.5 -10.1 129 359-506 53-187 (499)
278 1odf_A YGR205W, hypothetical 3 98.4 1.2E-08 4.3E-13 102.5 -3.4 114 1-125 42-169 (290)
279 3ec2_A DNA replication protein 98.4 2.3E-07 8E-12 86.1 5.3 46 107-152 99-145 (180)
280 3a00_A Guanylate kinase, GMP k 98.4 8.1E-08 2.8E-12 89.9 1.9 30 372-401 1-30 (186)
281 3uie_A Adenylyl-sulfate kinase 98.4 1.7E-08 5.7E-13 95.7 -3.3 53 358-411 11-65 (200)
282 2dy1_A Elongation factor G; tr 98.3 2.3E-07 7.8E-12 103.9 4.6 132 366-539 3-138 (665)
283 1zp6_A Hypothetical protein AT 98.3 1.2E-09 4.3E-14 102.4 -12.1 143 1-160 20-169 (191)
284 2kjq_A DNAA-related protein; s 98.3 5.9E-07 2E-11 81.1 5.1 48 105-153 80-129 (149)
285 1sxj_E Activator 1 40 kDa subu 98.3 6.5E-07 2.2E-11 92.1 5.9 125 1-153 47-177 (354)
286 2rcn_A Probable GTPase ENGC; Y 98.3 2.8E-07 9.5E-12 95.0 2.9 98 1-105 226-328 (358)
287 1fnn_A CDC6P, cell division co 98.3 1.4E-06 4.8E-11 90.5 8.3 49 494-543 124-175 (389)
288 4a1f_A DNAB helicase, replicat 98.2 1E-06 3.4E-11 90.2 6.2 128 361-535 35-164 (338)
289 1ni3_A YCHF GTPase, YCHF GTP-b 98.2 2.6E-09 8.8E-14 111.7 -13.6 116 35-175 87-209 (392)
290 1udx_A The GTP-binding protein 98.2 2.8E-08 9.6E-13 104.8 -5.8 72 85-160 247-319 (416)
291 1knq_A Gluconate kinase; ALFA/ 98.2 9.2E-08 3.2E-12 88.3 -2.6 39 370-412 6-44 (175)
292 1kgd_A CASK, peripheral plasma 98.1 7.6E-07 2.6E-11 82.8 2.2 37 370-406 3-40 (180)
293 2vp4_A Deoxynucleoside kinase; 98.1 1.1E-06 3.6E-11 85.2 2.9 41 366-410 14-54 (230)
294 3t34_A Dynamin-related protein 98.1 7.9E-06 2.7E-10 84.6 9.4 173 359-535 24-212 (360)
295 3kl4_A SRP54, signal recogniti 98.1 7.3E-06 2.5E-10 86.5 9.2 39 371-409 96-134 (433)
296 1pui_A ENGB, probable GTP-bind 98.1 2.7E-06 9.3E-11 80.4 5.3 75 68-142 126-202 (210)
297 1v5w_A DMC1, meiotic recombina 98.0 1.8E-05 6E-10 81.4 11.1 152 368-552 118-308 (343)
298 1rz3_A Hypothetical protein rb 98.0 9.6E-07 3.3E-11 83.6 1.3 42 369-410 19-60 (201)
299 3vaa_A Shikimate kinase, SK; s 98.0 2.2E-06 7.7E-11 80.8 3.6 39 358-396 11-49 (199)
300 3e70_C DPA, signal recognition 98.0 1.1E-06 3.7E-11 89.8 1.2 145 1-168 140-306 (328)
301 2z43_A DNA repair and recombin 98.0 2.7E-05 9.1E-10 79.4 10.6 152 368-552 103-289 (324)
302 3lda_A DNA repair protein RAD5 98.0 3E-05 1E-09 81.2 10.9 61 107-167 272-364 (400)
303 2yv5_A YJEQ protein; hydrolase 97.9 9.3E-07 3.2E-11 89.4 -0.6 101 1-103 176-300 (302)
304 3tqc_A Pantothenate kinase; bi 97.9 6.6E-07 2.3E-11 91.0 -2.1 47 359-405 73-127 (321)
305 3ney_A 55 kDa erythrocyte memb 97.9 3.3E-06 1.1E-10 79.6 2.8 32 366-397 13-44 (197)
306 2px0_A Flagellar biosynthesis 97.9 1.1E-05 3.9E-10 81.1 6.9 127 1-170 116-246 (296)
307 3tau_A Guanylate kinase, GMP k 97.9 4.6E-06 1.6E-10 79.3 3.7 35 370-404 6-41 (208)
308 1ega_A Protein (GTP-binding pr 97.9 7.2E-07 2.5E-11 90.2 -2.2 63 478-547 101-169 (301)
309 2r6a_A DNAB helicase, replicat 97.9 5.5E-05 1.9E-09 80.8 12.3 99 68-168 273-401 (454)
310 2z4s_A Chromosomal replication 97.9 1.6E-06 5.5E-11 92.3 0.3 43 494-536 193-236 (440)
311 3bh0_A DNAB-like replicative h 97.9 1.5E-05 5E-10 81.0 7.2 131 360-535 56-189 (315)
312 2oap_1 GSPE-2, type II secreti 97.9 1.3E-07 4.5E-12 102.4 -8.6 60 87-158 397-458 (511)
313 1cke_A CK, MSSA, protein (cyti 97.9 9.9E-07 3.4E-11 84.7 -1.9 57 372-428 5-74 (227)
314 1sxj_C Activator 1 40 kDa subu 97.9 4.7E-08 1.6E-12 100.5 -12.3 46 358-403 30-77 (340)
315 2f1r_A Molybdopterin-guanine d 97.8 2.1E-07 7.1E-12 86.1 -7.2 123 1-141 13-164 (171)
316 2qby_A CDC6 homolog 1, cell di 97.8 6.8E-06 2.3E-10 84.9 3.0 29 370-398 43-71 (386)
317 2qt1_A Nicotinamide riboside k 97.8 1.1E-05 3.8E-10 76.4 4.2 31 367-397 16-46 (207)
318 2ius_A DNA translocase FTSK; n 97.8 7.8E-07 2.7E-11 95.8 -5.0 97 64-162 240-361 (512)
319 2zr9_A Protein RECA, recombina 97.7 2.8E-05 9.5E-10 80.1 6.3 76 97-172 126-236 (349)
320 2q6t_A DNAB replication FORK h 97.7 0.00021 7.2E-09 76.0 12.2 165 361-551 189-396 (444)
321 2p67_A LAO/AO transport system 97.7 4.4E-06 1.5E-10 85.9 -1.1 52 359-410 43-94 (341)
322 1u94_A RECA protein, recombina 97.6 0.00057 2E-08 70.4 14.4 143 369-558 60-237 (356)
323 2gza_A Type IV secretion syste 97.6 1.7E-05 5.9E-10 82.1 3.0 113 1-167 186-303 (361)
324 1in4_A RUVB, holliday junction 97.6 2.4E-06 8.3E-11 87.5 -3.5 135 1-159 62-211 (334)
325 1f2t_A RAD50 ABC-ATPase; DNA d 97.6 2.7E-05 9.1E-10 70.1 3.5 30 363-393 15-44 (149)
326 3m6a_A ATP-dependent protease 97.6 7E-06 2.4E-10 89.7 -0.5 49 359-408 96-144 (543)
327 1kag_A SKI, shikimate kinase I 97.6 1.8E-05 6.3E-10 72.3 2.3 34 371-408 3-36 (173)
328 3lxx_A GTPase IMAP family memb 97.6 0.00044 1.5E-08 66.8 12.2 29 374-402 31-59 (239)
329 3b9p_A CG5977-PA, isoform A; A 97.6 0.00036 1.2E-08 69.6 11.7 59 480-538 98-170 (297)
330 1ypw_A Transitional endoplasmi 97.6 3.7E-05 1.3E-09 87.9 4.5 33 366-398 232-264 (806)
331 2yhs_A FTSY, cell division pro 97.6 5.9E-06 2E-10 88.2 -2.0 132 1-152 304-450 (503)
332 2pez_A Bifunctional 3'-phospho 97.5 1.6E-05 5.6E-10 73.3 1.1 40 370-410 3-44 (179)
333 2www_A Methylmalonic aciduria 97.5 2E-05 7E-10 81.1 1.7 42 370-411 72-113 (349)
334 4eaq_A DTMP kinase, thymidylat 97.5 3.6E-05 1.2E-09 74.4 2.9 48 361-409 12-62 (229)
335 2qm8_A GTPase/ATPase; G protei 97.4 2.1E-06 7.3E-11 88.1 -7.8 46 88-137 208-259 (337)
336 3cf0_A Transitional endoplasmi 97.4 0.00031 1.1E-08 70.6 8.1 29 368-396 45-73 (301)
337 1p9r_A General secretion pathw 97.4 5.8E-06 2E-10 87.2 -5.1 108 1-113 178-314 (418)
338 2i1q_A DNA repair and recombin 97.3 0.00058 2E-08 69.2 9.7 27 368-394 94-120 (322)
339 1mky_A Probable GTP-binding pr 97.3 9.8E-05 3.3E-09 78.5 3.9 159 374-540 182-368 (439)
340 3ice_A Transcription terminati 97.3 3.5E-05 1.2E-09 79.3 0.2 51 343-396 134-198 (422)
341 2ffh_A Protein (FFH); SRP54, s 97.3 6.9E-05 2.4E-09 78.9 2.2 48 363-412 91-138 (425)
342 2w58_A DNAI, primosome compone 97.3 0.00017 5.8E-09 67.6 4.5 25 373-397 55-79 (202)
343 1l8q_A Chromosomal replication 97.3 0.00053 1.8E-08 69.4 8.4 42 494-535 97-139 (324)
344 1m7g_A Adenylylsulfate kinase; 97.2 4.7E-05 1.6E-09 72.3 0.3 43 368-410 21-65 (211)
345 3qks_A DNA double-strand break 97.2 0.00014 4.9E-09 68.7 3.5 30 363-393 15-44 (203)
346 1j8m_F SRP54, signal recogniti 97.2 5.9E-05 2E-09 75.8 -0.0 49 363-412 89-138 (297)
347 2gj8_A MNME, tRNA modification 97.2 0.00027 9.1E-09 64.6 4.3 27 370-396 2-28 (172)
348 3bos_A Putative DNA replicatio 97.1 0.00033 1.1E-08 67.0 5.1 43 494-536 103-147 (242)
349 3llm_A ATP-dependent RNA helic 97.1 9.8E-05 3.4E-09 71.4 0.9 147 369-545 73-228 (235)
350 4fcw_A Chaperone protein CLPB; 97.1 0.0003 1E-08 70.6 4.4 32 372-403 47-78 (311)
351 1vma_A Cell division protein F 97.1 0.00077 2.6E-08 67.9 7.3 58 71-136 151-211 (306)
352 1m2o_B GTP-binding protein SAR 97.1 0.00033 1.1E-08 65.0 4.1 34 360-394 12-45 (190)
353 3c8u_A Fructokinase; YP_612366 97.1 3.4E-06 1.2E-10 80.2 -9.8 136 1-167 33-174 (208)
354 2yvu_A Probable adenylyl-sulfa 97.0 0.00013 4.4E-09 67.6 1.0 41 368-408 9-50 (186)
355 2qag_A Septin-2, protein NEDD5 97.0 6.5E-05 2.2E-09 77.7 -1.4 53 342-404 17-69 (361)
356 3k53_A Ferrous iron transport 97.0 8.2E-05 2.8E-09 73.6 -0.7 45 504-548 144-189 (271)
357 1y63_A LMAJ004144AAA protein; 97.0 0.00033 1.1E-08 64.9 3.1 32 364-395 2-33 (184)
358 1f6b_A SAR1; gtpases, N-termin 97.0 0.00016 5.5E-09 67.7 0.9 48 359-407 13-68 (198)
359 1u0l_A Probable GTPase ENGC; p 96.9 6.6E-05 2.2E-09 75.7 -2.1 89 1-93 180-294 (301)
360 2x8a_A Nuclear valosin-contain 96.9 7.8E-07 2.7E-11 88.7 -16.1 119 1-133 55-190 (274)
361 1sxj_D Activator 1 41 kDa subu 96.9 1.2E-05 4E-10 82.4 -7.8 42 495-538 133-174 (353)
362 2ohf_A Protein OLA1, GTP-bindi 96.9 0.00039 1.3E-08 72.4 3.6 41 368-408 18-69 (396)
363 2if2_A Dephospho-COA kinase; a 96.9 0.00032 1.1E-08 65.8 2.8 21 374-394 3-23 (204)
364 3t61_A Gluconokinase; PSI-biol 96.9 0.00012 4.2E-09 68.7 -0.5 35 372-410 18-52 (202)
365 2wji_A Ferrous iron transport 96.9 0.00084 2.9E-08 60.6 4.9 24 374-397 5-28 (165)
366 2dr3_A UPF0273 protein PH0284; 96.9 0.0021 7.3E-08 61.7 8.0 59 107-165 127-196 (247)
367 1q57_A DNA primase/helicase; d 96.8 0.013 4.4E-07 63.1 14.8 33 362-394 232-264 (503)
368 1xp8_A RECA protein, recombina 96.8 0.012 4E-07 60.8 13.6 140 368-554 70-244 (366)
369 1ls1_A Signal recognition part 96.8 0.0071 2.4E-07 60.5 11.6 45 92-136 164-209 (295)
370 2wjg_A FEOB, ferrous iron tran 96.8 0.00061 2.1E-08 62.5 3.4 22 374-395 9-30 (188)
371 2qor_A Guanylate kinase; phosp 96.8 0.00055 1.9E-08 64.5 3.1 29 369-397 9-37 (204)
372 3h4m_A Proteasome-activating n 96.8 0.0025 8.6E-08 62.9 7.8 51 490-540 105-169 (285)
373 2v1u_A Cell division control p 96.7 0.0014 4.9E-08 67.3 5.8 28 370-397 42-69 (387)
374 1lvg_A Guanylate kinase, GMP k 96.7 7.1E-07 2.4E-11 84.4 -18.2 57 101-165 116-173 (198)
375 3io5_A Recombination and repai 96.6 0.0093 3.2E-07 59.9 10.7 124 369-538 26-173 (333)
376 2zej_A Dardarin, leucine-rich 96.6 0.0011 3.6E-08 61.1 3.4 25 374-398 4-28 (184)
377 1np6_A Molybdopterin-guanine d 96.6 0.00069 2.3E-08 62.4 2.0 36 373-408 7-45 (174)
378 3cmw_A Protein RECA, recombina 96.6 0.0041 1.4E-07 75.5 9.1 75 98-172 449-558 (1706)
379 2ga8_A Hypothetical 39.9 kDa p 96.6 0.00026 8.8E-09 72.4 -1.0 36 361-396 11-48 (359)
380 2b8t_A Thymidine kinase; deoxy 96.5 0.003 1E-07 60.5 6.3 52 495-551 89-150 (223)
381 3cm0_A Adenylate kinase; ATP-b 96.5 0.0012 4E-08 60.8 3.1 25 370-394 2-26 (186)
382 1t9h_A YLOQ, probable GTPase E 96.5 0.00023 8E-09 71.7 -2.0 96 1-97 184-302 (307)
383 1njg_A DNA polymerase III subu 96.5 0.0019 6.5E-08 61.1 4.6 44 494-539 125-168 (250)
384 1q3t_A Cytidylate kinase; nucl 96.5 0.0013 4.3E-08 63.5 3.1 35 369-403 13-50 (236)
385 1lv7_A FTSH; alpha/beta domain 96.4 0.0011 3.6E-08 64.7 2.4 45 362-410 37-81 (257)
386 2p5t_B PEZT; postsegregational 96.4 0.001 3.5E-08 65.0 2.0 41 368-410 28-68 (253)
387 2zts_A Putative uncharacterize 96.3 0.017 5.7E-07 55.4 10.0 60 492-551 132-206 (251)
388 2e87_A Hypothetical protein PH 96.3 0.0028 9.6E-08 65.2 4.6 67 85-153 226-295 (357)
389 4a1f_A DNAB helicase, replicat 96.2 0.0062 2.1E-07 62.1 6.7 56 89-149 108-165 (338)
390 4ag6_A VIRB4 ATPase, type IV s 96.2 0.0015 5.2E-08 68.0 2.2 60 494-553 261-335 (392)
391 3r20_A Cytidylate kinase; stru 96.2 0.0016 5.3E-08 62.9 2.0 32 372-403 9-43 (233)
392 3n70_A Transport activator; si 96.2 0.02 6.8E-07 50.5 9.2 43 495-539 76-119 (145)
393 3kb2_A SPBC2 prophage-derived 96.1 0.0027 9.1E-08 57.4 3.2 23 374-396 3-25 (173)
394 1qhx_A CPT, protein (chloramph 96.0 0.0036 1.2E-07 57.0 3.6 26 372-397 3-28 (178)
395 2vhj_A Ntpase P4, P4; non- hyd 96.0 0.013 4.5E-07 59.0 7.9 28 367-394 118-145 (331)
396 3bgw_A DNAB-like replicative h 96.0 0.013 4.5E-07 62.0 8.3 34 361-394 186-219 (444)
397 1jal_A YCHF protein; nucleotid 96.0 0.0046 1.6E-07 63.6 4.4 36 372-407 2-48 (363)
398 1kht_A Adenylate kinase; phosp 95.9 0.0041 1.4E-07 57.2 3.5 25 372-396 3-27 (192)
399 1fnn_A CDC6P, cell division co 95.9 0.0067 2.3E-07 62.4 5.5 51 107-158 124-177 (389)
400 3d8b_A Fidgetin-like protein 1 95.9 0.021 7.3E-07 58.5 9.2 26 371-396 116-141 (357)
401 2qz4_A Paraplegin; AAA+, SPG7, 95.9 0.026 8.9E-07 54.5 9.4 26 371-396 38-63 (262)
402 3cmw_A Protein RECA, recombina 95.9 0.043 1.5E-06 66.7 12.8 67 99-165 101-202 (1706)
403 1vht_A Dephospho-COA kinase; s 95.8 0.0046 1.6E-07 58.5 3.6 24 371-394 3-26 (218)
404 2rhm_A Putative kinase; P-loop 95.8 0.0042 1.4E-07 57.2 3.1 27 370-396 3-29 (193)
405 1gtv_A TMK, thymidylate kinase 95.8 0.0012 4.1E-08 62.1 -0.7 30 374-403 2-31 (214)
406 3lw7_A Adenylate kinase relate 95.8 0.0045 1.5E-07 55.7 3.2 19 374-392 3-21 (179)
407 3dm5_A SRP54, signal recogniti 95.8 0.056 1.9E-06 56.9 11.9 28 371-398 99-126 (443)
408 2xau_A PRE-mRNA-splicing facto 95.8 0.0032 1.1E-07 71.5 2.6 76 85-160 185-262 (773)
409 1uf9_A TT1252 protein; P-loop, 95.8 0.0046 1.6E-07 57.5 3.1 33 372-409 8-40 (203)
410 3euj_A Chromosome partition pr 95.7 0.013 4.4E-07 62.6 6.8 76 470-551 372-464 (483)
411 2ze6_A Isopentenyl transferase 95.7 0.0044 1.5E-07 60.5 2.9 23 374-396 3-25 (253)
412 1via_A Shikimate kinase; struc 95.7 0.0045 1.5E-07 56.4 2.7 23 374-396 6-28 (175)
413 2jaq_A Deoxyguanosine kinase; 95.7 0.0055 1.9E-07 56.9 3.3 23 374-396 2-24 (205)
414 1ex7_A Guanylate kinase; subst 95.7 0.0053 1.8E-07 57.1 3.1 22 375-396 4-25 (186)
415 3cmu_A Protein RECA, recombina 95.7 0.022 7.5E-07 70.1 9.2 138 369-555 380-554 (2050)
416 3co5_A Putative two-component 95.6 0.021 7E-07 50.3 6.8 40 495-535 75-114 (143)
417 3ihw_A Centg3; RAS, centaurin, 95.6 0.01 3.5E-07 54.4 4.9 36 374-409 22-66 (184)
418 2v54_A DTMP kinase, thymidylat 95.6 0.0069 2.4E-07 56.3 3.6 26 371-396 3-28 (204)
419 3iij_A Coilin-interacting nucl 95.5 0.006 2E-07 55.8 3.0 25 370-394 9-33 (180)
420 3trf_A Shikimate kinase, SK; a 95.5 0.0073 2.5E-07 55.3 3.5 26 371-396 4-29 (185)
421 1ly1_A Polynucleotide kinase; 95.5 0.007 2.4E-07 54.9 3.3 22 373-394 3-24 (181)
422 1xjc_A MOBB protein homolog; s 95.5 0.0038 1.3E-07 57.0 1.4 26 373-398 5-30 (169)
423 2plr_A DTMP kinase, probable t 95.5 0.008 2.7E-07 56.1 3.6 28 371-398 3-30 (213)
424 2wwf_A Thymidilate kinase, put 95.4 0.0083 2.8E-07 56.2 3.5 26 370-395 8-33 (212)
425 2c95_A Adenylate kinase 1; tra 95.4 0.0084 2.9E-07 55.3 3.5 27 370-396 7-33 (196)
426 1gvn_B Zeta; postsegregational 95.4 0.0075 2.6E-07 60.0 3.2 36 370-407 31-66 (287)
427 1tev_A UMP-CMP kinase; ploop, 95.4 0.0088 3E-07 55.0 3.5 24 372-395 3-26 (196)
428 1nn5_A Similar to deoxythymidy 95.3 0.0092 3.1E-07 55.9 3.5 26 370-395 7-32 (215)
429 2vli_A Antibiotic resistance p 95.2 0.0077 2.6E-07 54.9 2.5 26 371-396 4-29 (183)
430 3k1j_A LON protease, ATP-depen 95.2 0.00056 1.9E-08 75.7 -6.3 47 88-135 181-227 (604)
431 1xx6_A Thymidine kinase; NESG, 95.2 0.029 1E-06 52.2 6.4 52 495-551 81-142 (191)
432 1nks_A Adenylate kinase; therm 95.1 0.01 3.6E-07 54.4 3.2 24 374-397 3-26 (194)
433 3ake_A Cytidylate kinase; CMP 95.1 0.011 3.6E-07 55.2 3.3 23 374-396 4-26 (208)
434 2z0h_A DTMP kinase, thymidylat 95.1 0.011 3.7E-07 54.6 3.3 23 374-396 2-24 (197)
435 2bwj_A Adenylate kinase 5; pho 95.1 0.0045 1.5E-07 57.4 0.5 28 369-396 9-36 (199)
436 3b1v_A Ferrous iron uptake tra 95.0 0.012 4E-07 58.1 3.4 23 374-396 5-27 (272)
437 1htw_A HI0065; nucleotide-bind 95.0 0.0058 2E-07 55.2 1.1 51 1-55 44-97 (158)
438 2qtf_A Protein HFLX, GTP-bindi 95.0 0.0051 1.8E-07 63.4 0.6 64 70-137 280-352 (364)
439 2ged_A SR-beta, signal recogni 94.9 0.012 4E-07 54.0 2.9 23 374-396 50-72 (193)
440 1fzq_A ADP-ribosylation factor 94.9 0.012 4.1E-07 53.7 2.9 23 374-396 18-40 (181)
441 1aky_A Adenylate kinase; ATP:A 94.8 0.016 5.5E-07 54.8 3.6 26 371-396 3-28 (220)
442 1zd8_A GTP:AMP phosphotransfer 94.8 0.015 5.1E-07 55.4 3.4 27 370-396 5-31 (227)
443 3zvl_A Bifunctional polynucleo 94.8 0.14 4.8E-06 53.5 11.2 26 370-395 256-281 (416)
444 3q72_A GTP-binding protein RAD 94.8 0.014 4.8E-07 51.8 2.9 24 374-397 4-27 (166)
445 2nzj_A GTP-binding protein REM 94.7 0.017 5.8E-07 51.7 3.4 23 374-396 6-28 (175)
446 2pbr_A DTMP kinase, thymidylat 94.7 0.016 5.5E-07 53.2 3.3 23 374-396 2-24 (195)
447 3fb4_A Adenylate kinase; psych 94.7 0.016 5.5E-07 54.5 3.3 22 374-395 2-23 (216)
448 2erx_A GTP-binding protein DI- 94.7 0.018 6.2E-07 51.2 3.4 22 374-395 5-26 (172)
449 2cdn_A Adenylate kinase; phosp 94.6 0.019 6.6E-07 53.4 3.6 25 371-395 19-43 (201)
450 2pt5_A Shikimate kinase, SK; a 94.6 0.018 6.2E-07 51.7 3.3 22 374-395 2-23 (168)
451 3q85_A GTP-binding protein REM 94.6 0.019 6.3E-07 51.2 3.4 23 374-396 4-26 (169)
452 1e6c_A Shikimate kinase; phosp 94.6 0.015 5.2E-07 52.4 2.7 22 374-395 4-25 (173)
453 3lnc_A Guanylate kinase, GMP k 94.6 6.6E-06 2.2E-10 79.5 -21.1 63 105-167 145-212 (231)
454 1z2a_A RAS-related protein RAB 94.6 0.016 5.4E-07 51.5 2.8 23 374-396 7-29 (168)
455 1zuh_A Shikimate kinase; alpha 94.6 0.019 6.5E-07 51.7 3.4 23 373-395 8-30 (168)
456 2dyk_A GTP-binding protein; GT 94.6 0.016 5.6E-07 51.0 2.9 23 374-396 3-25 (161)
457 1qf9_A UMP/CMP kinase, protein 94.5 0.018 6.2E-07 52.7 3.2 24 372-395 6-29 (194)
458 2ce2_X GTPase HRAS; signaling 94.5 0.016 5.5E-07 51.1 2.7 23 374-396 5-27 (166)
459 3tw8_B RAS-related protein RAB 94.5 0.018 6.1E-07 51.8 3.1 23 374-396 11-33 (181)
460 2lkc_A Translation initiation 94.5 0.022 7.6E-07 51.1 3.7 25 371-395 7-31 (178)
461 1svi_A GTP-binding protein YSX 94.5 0.018 6.1E-07 52.8 3.1 24 373-396 24-47 (195)
462 1ukz_A Uridylate kinase; trans 94.5 0.019 6.5E-07 53.4 3.3 25 372-396 15-39 (203)
463 2grj_A Dephospho-COA kinase; T 94.5 0.019 6.5E-07 53.5 3.3 23 373-395 13-35 (192)
464 2orv_A Thymidine kinase; TP4A 94.5 0.069 2.4E-06 51.0 7.2 52 494-551 89-150 (234)
465 3dl0_A Adenylate kinase; phosp 94.5 0.019 6.5E-07 54.0 3.3 22 374-395 2-23 (216)
466 1zak_A Adenylate kinase; ATP:A 94.5 0.017 5.7E-07 54.8 2.8 26 371-396 4-29 (222)
467 3lxw_A GTPase IMAP family memb 94.5 0.02 6.7E-07 55.5 3.4 24 374-397 23-46 (247)
468 3pqc_A Probable GTP-binding pr 94.5 0.019 6.4E-07 52.4 3.1 23 374-396 25-47 (195)
469 1moz_A ARL1, ADP-ribosylation 94.5 0.013 4.4E-07 53.1 1.9 22 373-394 19-40 (183)
470 1ko7_A HPR kinase/phosphatase; 94.5 0.031 1.1E-06 56.1 4.8 47 360-407 133-183 (314)
471 3a4m_A L-seryl-tRNA(SEC) kinas 94.5 0.021 7.3E-07 55.7 3.6 25 371-395 3-27 (260)
472 1kao_A RAP2A; GTP-binding prot 94.4 0.018 6.3E-07 50.8 2.9 22 374-395 5-26 (167)
473 1z0j_A RAB-22, RAS-related pro 94.4 0.017 5.8E-07 51.4 2.6 23 374-396 8-30 (170)
474 1u8z_A RAS-related protein RAL 94.4 0.017 5.7E-07 51.1 2.6 22 374-395 6-27 (168)
475 2cxx_A Probable GTP-binding pr 94.4 0.02 6.9E-07 52.0 3.1 23 374-396 3-25 (190)
476 2iyv_A Shikimate kinase, SK; t 94.4 0.018 6E-07 52.7 2.7 23 373-395 3-25 (184)
477 1z08_A RAS-related protein RAB 94.4 0.019 6.6E-07 51.1 2.9 22 374-395 8-29 (170)
478 1g16_A RAS-related protein SEC 94.4 0.017 5.8E-07 51.4 2.5 23 374-396 5-27 (170)
479 1ek0_A Protein (GTP-binding pr 94.4 0.018 6E-07 51.2 2.6 23 374-396 5-27 (170)
480 1ky3_A GTP-binding protein YPT 94.3 0.02 6.7E-07 51.6 2.9 23 374-396 10-32 (182)
481 1c1y_A RAS-related protein RAP 94.3 0.018 6.2E-07 51.0 2.6 22 374-395 5-26 (167)
482 1wms_A RAB-9, RAB9, RAS-relate 94.3 0.019 6.4E-07 51.6 2.6 23 374-396 9-31 (177)
483 1uj2_A Uridine-cytidine kinase 94.2 0.023 7.8E-07 55.1 3.3 23 373-395 23-45 (252)
484 2fn4_A P23, RAS-related protei 94.2 0.021 7.1E-07 51.4 2.8 22 374-395 11-32 (181)
485 1a7j_A Phosphoribulokinase; tr 94.2 0.015 5.1E-07 58.0 1.9 26 371-396 4-29 (290)
486 1sky_E F1-ATPase, F1-ATP synth 94.2 0.009 3.1E-07 63.3 0.2 44 360-404 140-183 (473)
487 2r8r_A Sensor protein; KDPD, P 94.2 0.0088 3E-07 57.2 0.1 44 492-535 81-125 (228)
488 1wf3_A GTP-binding protein; GT 94.2 0.025 8.4E-07 56.7 3.4 23 374-396 9-31 (301)
489 3cnl_A YLQF, putative uncharac 94.2 0.028 9.5E-07 55.1 3.7 30 373-402 100-129 (262)
490 3iby_A Ferrous iron transport 94.1 0.025 8.4E-07 55.2 3.3 23 374-396 3-25 (256)
491 2xb4_A Adenylate kinase; ATP-b 94.1 0.026 8.9E-07 53.7 3.3 22 374-395 2-23 (223)
492 1qvr_A CLPB protein; coiled co 94.1 0.04 1.4E-06 63.3 5.5 26 373-398 589-614 (854)
493 2hxs_A RAB-26, RAS-related pro 94.1 0.028 9.4E-07 50.5 3.3 23 374-396 8-30 (178)
494 2f6r_A COA synthase, bifunctio 94.1 0.025 8.7E-07 55.9 3.2 22 373-394 76-97 (281)
495 1upt_A ARL1, ADP-ribosylation 94.0 0.024 8.3E-07 50.5 2.8 22 374-395 9-30 (171)
496 3t1o_A Gliding protein MGLA; G 94.0 0.026 8.8E-07 51.6 3.0 25 374-398 16-40 (198)
497 1r2q_A RAS-related protein RAB 94.0 0.024 8.3E-07 50.2 2.8 22 374-395 8-29 (170)
498 4dsu_A GTPase KRAS, isoform 2B 94.0 0.024 8.3E-07 51.4 2.9 23 374-396 6-28 (189)
499 2oil_A CATX-8, RAS-related pro 94.0 0.024 8.1E-07 52.0 2.8 23 374-396 27-49 (193)
500 2dby_A GTP-binding protein; GD 94.0 0.021 7.1E-07 58.9 2.6 22 374-395 3-24 (368)
No 1
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.9e-70 Score=601.07 Aligned_cols=411 Identities=23% Similarity=0.291 Sum_probs=311.1
Q ss_pred CCcchHHHHHhccccCCCcc------------CCCCCcc-----cccccceeEEcCCCCCCCC---CCHHHHHHHHHHhc
Q psy7366 1 MGLTTTPKRVVTLLLTTQKV------------PGSNPTI-----DKNLSYIGYCPQFDALNDR---LTPREHLEFYSRVR 60 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~~~------------~~~~~~~-----~~~~~~ig~v~Q~~~l~~~---~tv~e~l~~~~~~~ 60 (566)
.||||++|+++|++.|+... .+..... ......+++++|+..+++. .|+.|++...
T Consensus 58 aGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~---- 133 (538)
T 1yqt_A 58 TGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKA---- 133 (538)
T ss_dssp SSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHH----
T ss_pred CCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhh----
Confidence 59999999999999775421 1111100 0112468899998654332 3888887531
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCC
Q psy7366 61 NVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEG 140 (566)
Q Consensus 61 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g 140 (566)
+..++++++++.+|++...++++.+|||||||||+||+||+.+|+|||||||||+||+.+++++.++|++++++|
T Consensus 134 -----~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g 208 (538)
T 1yqt_A 134 -----DETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEG 208 (538)
T ss_dssp -----CSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred -----hHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcC
Confidence 112457889999999998999999999999999999999999999999999999999999999999999998889
Q ss_pred CEEEEecCChhHHHhhcCEEEEEeCCEEEEecChhHHHhhccCccccCCCCCCCCccchhHHHhhccCCCCccccCCCcc
Q psy7366 141 RCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRALNDGSGSGIRNSARPE 220 (566)
Q Consensus 141 ~tviiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (566)
+|||+||||++++..+||||++|++|...+ |... .+. .....+...+...... . .
T Consensus 209 ~tvi~vsHd~~~~~~~~dri~vl~~~~~~~-~~~~--------~~~---------~~~~~~~~~~~~~~~~------~-~ 263 (538)
T 1yqt_A 209 KSVLVVEHDLAVLDYLSDIIHVVYGEPGVY-GIFS--------QPK---------GTRNGINEFLRGYLKD------E-N 263 (538)
T ss_dssp CEEEEECSCHHHHHHHCSEEEEEEEETTTE-EEEC--------CCE---------EHHHHHHHHHHTEETT------T-T
T ss_pred CEEEEEeCCHHHHHHhCCEEEEEcCccccc-cccc--------chh---------hHHHHHHHHhhhccch------h-h
Confidence 999999999999999999999998642110 0000 000 0000000000000000 0 0
Q ss_pred cccccccccCCccchhhhhhhHHHHHHHHHHHHhhhhheeeccCCeeeeeeccchhhchHHHHHHHHHHHHHHHHHHHHH
Q psy7366 221 VSGFYNENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHGALYSAINLSI 300 (566)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (566)
.
T Consensus 264 ---------------------------------------------~---------------------------------- 264 (538)
T 1yqt_A 264 ---------------------------------------------V---------------------------------- 264 (538)
T ss_dssp ---------------------------------------------E----------------------------------
T ss_pred ---------------------------------------------h----------------------------------
Confidence 0
Q ss_pred HHHHHhhhhcccccCCCCCCCcchhHHHHHHhhhcCCCCCCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcC
Q psy7366 301 EYKVFSRCFTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGL 380 (566)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~ 380 (566)
.............. . .......+++++|+++.|+ + ..|+++||+|++||++||+||
T Consensus 265 ----------~~~~~~~~~~~~~~-----~----~~~~~~~~l~~~~l~~~~~----~-~~l~~~~~~i~~Ge~~~i~G~ 320 (538)
T 1yqt_A 265 ----------RFRPYEIKFTKTGE-----R----VEIERETLVTYPRLVKDYG----S-FRLEVEPGEIKKGEVIGIVGP 320 (538)
T ss_dssp ----------ECSSSCCCCCCSSG-----G----GSSCCCEEEEECCEEEEET----T-EEEEECCEEEETTCEEEEECC
T ss_pred ----------cccccccccccCCc-----c----cccCCCeEEEEeeEEEEEC----C-EEEEeCccccCCCCEEEEECC
Confidence 00000000000000 0 0001234799999999995 3 479999999999999999999
Q ss_pred CCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHH
Q psy7366 381 NGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNE 460 (566)
Q Consensus 381 NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ 460 (566)
||||||||+|+|+|+++|++|+|.+ ..+++|+||++..++.+||.+++....... .. ..+.+.+
T Consensus 321 NGsGKSTLlk~l~Gl~~p~~G~i~~------------~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~-~~---~~~~~~~ 384 (538)
T 1yqt_A 321 NGIGKTTFVKMLAGVEEPTEGKIEW------------DLTVAYKPQYIKADYEGTVYELLSKIDASK-LN---SNFYKTE 384 (538)
T ss_dssp TTSSHHHHHHHHHTSSCCSBCCCCC------------CCCEEEECSSCCCCCSSBHHHHHHHHHHHH-HT---CHHHHHH
T ss_pred CCCCHHHHHHHHhCCCCCCCeEEEE------------CceEEEEecCCcCCCCCcHHHHHHhhhccC-CC---HHHHHHH
Confidence 9999999999999999999999975 125999999987777899988876531110 01 1345778
Q ss_pred HHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCHHH
Q psy7366 461 SLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS-EGRCVILTSHNMEE 539 (566)
Q Consensus 461 ~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~tvl~vsHd~~~ 539 (566)
+++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||+||||+++
T Consensus 385 ~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~ 464 (538)
T 1yqt_A 385 LLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLM 464 (538)
T ss_dssp TTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHH
T ss_pred HHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 99999998888999999999999999999999999999999999999999999999999999874 59999999999999
Q ss_pred HHhhCCEEEEEEC--CEEEEecCcccc
Q psy7366 540 CEALCTKLTIMVN--GQFTCLGSATHL 564 (566)
Q Consensus 540 ~~~~~drv~~l~~--G~i~~~g~~~~l 564 (566)
+..+|||+++|++ |++...|+++++
T Consensus 465 ~~~~~drv~vl~~~~~~~~~~g~~~~~ 491 (538)
T 1yqt_A 465 IDYVSDRLMVFEGEPGKYGRALPPMGM 491 (538)
T ss_dssp HHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred HHHhCCEEEEEeCCcceEeecCCHHHH
Confidence 9999999999986 788889998765
No 2
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1.3e-69 Score=600.29 Aligned_cols=411 Identities=23% Similarity=0.286 Sum_probs=311.7
Q ss_pred CCcchHHHHHhccccCCCcc------------CCCCCcc-----cccccceeEEcCCCCCCC---CCCHHHHHHHHHHhc
Q psy7366 1 MGLTTTPKRVVTLLLTTQKV------------PGSNPTI-----DKNLSYIGYCPQFDALND---RLTPREHLEFYSRVR 60 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~~~------------~~~~~~~-----~~~~~~ig~v~Q~~~l~~---~~tv~e~l~~~~~~~ 60 (566)
.||||++|+++|++.|+... .+..... ......+++++|+..+++ ..||.|++...
T Consensus 128 sGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~---- 203 (607)
T 3bk7_A 128 TGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV---- 203 (607)
T ss_dssp SSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT----
T ss_pred ChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh----
Confidence 59999999999999876421 1111100 011235889999854432 23899988531
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCC
Q psy7366 61 NVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEG 140 (566)
Q Consensus 61 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g 140 (566)
+..+++.++++.+||+...++++.+|||||||||+||+||+.+|+||||||||++||+.++.++.++|++++++|
T Consensus 204 -----~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g 278 (607)
T 3bk7_A 204 -----DEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEG 278 (607)
T ss_dssp -----CCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred -----HHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcC
Confidence 112457789999999999999999999999999999999999999999999999999999999999999998789
Q ss_pred CEEEEecCChhHHHhhcCEEEEEeCCEEEEecChhHHHhhccCccccCCCCCCCCccchhHHHhhccCCCCccccCCCcc
Q psy7366 141 RCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRALNDGSGSGIRNSARPE 220 (566)
Q Consensus 141 ~tviiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (566)
.|||+||||++++..+||||++|+++... .|... .+. .........+....
T Consensus 279 ~tvIivsHdl~~~~~~adri~vl~~~~~~-~g~~~--------~~~---------~~~~~i~~~~~~~~----------- 329 (607)
T 3bk7_A 279 KAVLVVEHDLAVLDYLSDVIHVVYGEPGV-YGIFS--------KPK---------GTRNGINEFLQGYL----------- 329 (607)
T ss_dssp CEEEEECSCHHHHHHHCSEEEEEESCTTT-EEEEC--------CCE---------EHHHHHHHHHHTEE-----------
T ss_pred CEEEEEecChHHHHhhCCEEEEECCCccc-cceec--------cch---------hHHHHHHHHHhhcc-----------
Confidence 99999999999999999999999864211 01000 000 00000000000000
Q ss_pred cccccccccCCccchhhhhhhHHHHHHHHHHHHhhhhheeeccCCeeeeeeccchhhchHHHHHHHHHHHHHHHHHHHHH
Q psy7366 221 VSGFYNENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHGALYSAINLSI 300 (566)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (566)
.....
T Consensus 330 -----------------------------------------~~~~~---------------------------------- 334 (607)
T 3bk7_A 330 -----------------------------------------KDENV---------------------------------- 334 (607)
T ss_dssp -----------------------------------------TTTTE----------------------------------
T ss_pred -----------------------------------------hhhhh----------------------------------
Confidence 00000
Q ss_pred HHHHHhhhhcccccCCCCCCCcchhHHHHHHhhhcCCCCCCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcC
Q psy7366 301 EYKVFSRCFTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGL 380 (566)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~ 380 (566)
.............. ........+++++|+++.|+ + ..|+++||+|++||++||+||
T Consensus 335 ----------~~~~~~~~~~~~~~---------~~~~~~~~~l~~~~l~~~~~----~-~~l~~~~~~v~~Gei~~i~G~ 390 (607)
T 3bk7_A 335 ----------RFRPYEIRFTKLSE---------RVDVERETLVEYPRLVKDYG----S-FKLEVEPGEIRKGEVIGIVGP 390 (607)
T ss_dssp ----------ECCSSCCCCCCSTT---------SCCCCCCEEEEECCEEEECS----S-CEEEECCEEEETTCEEEEECC
T ss_pred ----------hccccccccccCCC---------cccccCceEEEEeceEEEec----c-eEEEecccccCCCCEEEEECC
Confidence 00000000000000 00001234799999999996 3 479999999999999999999
Q ss_pred CCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHH
Q psy7366 381 NGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNE 460 (566)
Q Consensus 381 NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ 460 (566)
||||||||+|+|+|+++|++|+|.+. .+++|+||++.+++.+||.|++....... ....+.+.+
T Consensus 391 NGsGKSTLlk~l~Gl~~p~~G~I~~~------------~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~----~~~~~~~~~ 454 (607)
T 3bk7_A 391 NGIGKTTFVKMLAGVEEPTEGKVEWD------------LTVAYKPQYIKAEYEGTVYELLSKIDSSK----LNSNFYKTE 454 (607)
T ss_dssp TTSSHHHHHHHHHTSSCCSBSCCCCC------------CCEEEECSSCCCCCSSBHHHHHHHHHHHH----HHCHHHHHH
T ss_pred CCCCHHHHHHHHhcCCCCCceEEEEe------------eEEEEEecCccCCCCCcHHHHHHhhhccC----CCHHHHHHH
Confidence 99999999999999999999999761 36999999988778899999886541100 011345788
Q ss_pred HHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCHHH
Q psy7366 461 SLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS-EGRCVILTSHNMEE 539 (566)
Q Consensus 461 ~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~tvl~vsHd~~~ 539 (566)
+++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||+||||+++
T Consensus 455 ~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~ 534 (607)
T 3bk7_A 455 LLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLM 534 (607)
T ss_dssp THHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred HHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 99999999889999999999999999999999999999999999999999999999999999864 59999999999999
Q ss_pred HHhhCCEEEEEEC--CEEEEecCcccc
Q psy7366 540 CEALCTKLTIMVN--GQFTCLGSATHL 564 (566)
Q Consensus 540 ~~~~~drv~~l~~--G~i~~~g~~~~l 564 (566)
+..+|||+++|++ |++...|+++++
T Consensus 535 ~~~~adrv~vl~~~~g~~~~~g~p~~~ 561 (607)
T 3bk7_A 535 IDYVSDRLIVFEGEPGRHGRALPPMGM 561 (607)
T ss_dssp HHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred HHHhCCEEEEEcCCcceEEecCCHHHH
Confidence 9999999999986 888889998875
No 3
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.4e-68 Score=583.02 Aligned_cols=414 Identities=20% Similarity=0.214 Sum_probs=302.7
Q ss_pred CCcchHHHHHhccccCCCc-c-------------CCCCCcc-----cccccceeEEcCCCCCC---CCCCHHHHHHHHHH
Q psy7366 1 MGLTTTPKRVVTLLLTTQK-V-------------PGSNPTI-----DKNLSYIGYCPQFDALN---DRLTPREHLEFYSR 58 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~~-~-------------~~~~~~~-----~~~~~~ig~v~Q~~~l~---~~~tv~e~l~~~~~ 58 (566)
+||||++|+++|++.|+.. + .+..... ......+...+|..... ...++.+++...
T Consensus 36 aGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~-- 113 (538)
T 3ozx_A 36 VGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKI-- 113 (538)
T ss_dssp SSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHH--
T ss_pred CcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhhccCcHHHHhhcc--
Confidence 5999999999999987652 1 1111000 01112344555554322 224777765321
Q ss_pred hcCCChhhHHHHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHh
Q psy7366 59 VRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS 138 (566)
Q Consensus 59 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~ 138 (566)
...++++++++.+|+....++++.+|||||||||+||+||+.+|+|||||||||+||+.++.++.++|+++++
T Consensus 114 -------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~ 186 (538)
T 3ozx_A 114 -------DERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK 186 (538)
T ss_dssp -------CCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT
T ss_pred -------hhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC
Confidence 1123567899999999999999999999999999999999999999999999999999999999999999965
Q ss_pred CCCEEEEecCChhHHHhhcCEEEEEeCCEEEEecChhHHHhhccCccccCCCCCCCCccchhHHHhhccCCCCccccCCC
Q psy7366 139 EGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRALNDGSGSGIRNSAR 218 (566)
Q Consensus 139 ~g~tviiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (566)
|+|||+||||++++..+||+|++|++|...+ |... .+. .........+.......
T Consensus 187 -g~tii~vsHdl~~~~~~~d~i~vl~~~~~~~-g~~~--------~~~---------~~~~~~~~~~~g~~~~~------ 241 (538)
T 3ozx_A 187 -NKYVIVVDHDLIVLDYLTDLIHIIYGESSVY-GRVS--------KSY---------AARVGINNFLKGYLPAE------ 241 (538)
T ss_dssp -TSEEEEECSCHHHHHHHCSEEEEEEEETTTE-EEEC--------CCE---------EHHHHHHHHHHTEETTT------
T ss_pred -CCEEEEEEeChHHHHhhCCEEEEecCCcccc-cccc--------hhh---------hHHHHHHHHHhhhchhh------
Confidence 9999999999999999999999998754221 0000 000 00000000000000000
Q ss_pred cccccccccccCCccchhhhhhhHHHHHHHHHHHHhhhhheeeccCCeeeeeeccchhhchHHHHHHHHHHHHHHHHHHH
Q psy7366 219 PEVSGFYNENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHGALYSAINL 298 (566)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (566)
...
T Consensus 242 ----------------------------------------------~~~------------------------------- 244 (538)
T 3ozx_A 242 ----------------------------------------------NMK------------------------------- 244 (538)
T ss_dssp ----------------------------------------------TEE-------------------------------
T ss_pred ----------------------------------------------hhh-------------------------------
Confidence 000
Q ss_pred HHHHHHHhhhhcccccCCCCCCCcchhHHHHHHhhhcCCCCCCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEE
Q psy7366 299 SIEYKVFSRCFTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLL 378 (566)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~ 378 (566)
.+............ .... .......++++++++.|+ + ..|+++||+|++||++||+
T Consensus 245 -------------~r~~~~~~~~~~~~----~~~~--~~~~~~~l~~~~l~~~~~----~-~~l~~~~~~i~~Gei~~i~ 300 (538)
T 3ozx_A 245 -------------IRPDEIKFMLKEVS----DLDL--SKDLKTKMKWTKIIKKLG----D-FQLVVDNGEAKEGEIIGIL 300 (538)
T ss_dssp -------------CSSSCCCCSCC----------------CCEEEEECCEEEEET----T-EEEEECCEEEETTCEEEEE
T ss_pred -------------ccchhhhccccccc----cccc--cccccceEEEcceEEEEC----C-EEEEeccceECCCCEEEEE
Confidence 00000000000000 0000 001234689999999996 2 4688899999999999999
Q ss_pred cCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHH
Q psy7366 379 GLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIV 458 (566)
Q Consensus 379 G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~ 458 (566)
||||||||||+|+|+|+++|++|+|.+++. .++|+||+......+||.+|+.+..... ... ....+
T Consensus 301 G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~i~~~~q~~~~~~~~tv~~~l~~~~~~~-~~~--~~~~~ 366 (538)
T 3ozx_A 301 GPNGIGKTTFARILVGEITADEGSVTPEKQ-----------ILSYKPQRIFPNYDGTVQQYLENASKDA-LST--SSWFF 366 (538)
T ss_dssp CCTTSSHHHHHHHHTTSSCCSBCCEESSCC-----------CEEEECSSCCCCCSSBHHHHHHHHCSST-TCT--TSHHH
T ss_pred CCCCCCHHHHHHHHhCCCCCCCcEEEECCe-----------eeEeechhcccccCCCHHHHHHHhhhhc-cch--hHHHH
Confidence 999999999999999999999999987653 5899999977666789999987642111 111 12346
Q ss_pred HHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCH
Q psy7366 459 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS-EGRCVILTSHNM 537 (566)
Q Consensus 459 ~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~tvl~vsHd~ 537 (566)
.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||+||||+
T Consensus 367 ~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl 446 (538)
T 3ozx_A 367 EEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDL 446 (538)
T ss_dssp HHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred HHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 7889999999899999999999999999999999999999999999999999999999999999975 599999999999
Q ss_pred HHHHhhCCEEEEEEC--CEEEEecCccc
Q psy7366 538 EECEALCTKLTIMVN--GQFTCLGSATH 563 (566)
Q Consensus 538 ~~~~~~~drv~~l~~--G~i~~~g~~~~ 563 (566)
+++..+||||++|++ |.....+++.+
T Consensus 447 ~~~~~~aDri~vl~~~~~~~~~~~~~~~ 474 (538)
T 3ozx_A 447 SIHDYIADRIIVFKGEPEKAGLATSPVT 474 (538)
T ss_dssp HHHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred HHHHHhCCEEEEEeCCcceeccCCChHH
Confidence 999999999999986 55666666543
No 4
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=1.5e-67 Score=602.01 Aligned_cols=400 Identities=24% Similarity=0.295 Sum_probs=302.9
Q ss_pred CCcchHHHHHhccccCCCccCCCCCcccccccceeEEcCCC-CCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHHcC
Q psy7366 1 MGLTTTPKRVVTLLLTTQKVPGSNPTIDKNLSYIGYCPQFD-ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFA 79 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~-~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g 79 (566)
.||||++|++++ |+ +.+.... ...+++|++|++ .+++.+||.||+.+ ...+. .+++.++++.+|
T Consensus 472 sGKSTLLk~Lag----G~-i~g~~~~---~~~~~~~v~q~~~~~~~~ltv~e~l~~--~~~~~-----~~~v~~~L~~lg 536 (986)
T 2iw3_A 472 CGKSTLMRAIAN----GQ-VDGFPTQ---EECRTVYVEHDIDGTHSDTSVLDFVFE--SGVGT-----KEAIKDKLIEFG 536 (986)
T ss_dssp SSHHHHHHHHHH----TC-STTCCCT---TTSCEEETTCCCCCCCTTSBHHHHHHT--TCSSC-----HHHHHHHHHHTT
T ss_pred CCHHHHHHHHhC----CC-cCCCccc---cceeEEEEcccccccccCCcHHHHHHH--hhcCH-----HHHHHHHHHHcC
Confidence 599999999995 22 1221111 112478999986 67788999999975 22221 577899999999
Q ss_pred CC-cccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhcC
Q psy7366 80 LG-HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCT 158 (566)
Q Consensus 80 l~-~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~d 158 (566)
+. ...++++.+||||||||++||+||+.+|++|||||||++||+.++++|.++|++ .|+|||+||||++++.++||
T Consensus 537 L~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~~l~~~ad 613 (986)
T 2iw3_A 537 FTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSVFLDNVCE 613 (986)
T ss_dssp CCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHHHHHHHCS
T ss_pred CChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHHHHHHhCC
Confidence 95 678999999999999999999999999999999999999999999999999987 58999999999999999999
Q ss_pred EEEEEeCCEEE-EecChhHHHhhccCccccCCCCCCCCccchhHHHhhccCCCCccccCCCcccccccccccCCccchhh
Q psy7366 159 KLTIMVNGQFT-CLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRALNDGSGSGIRNSARPEVSGFYNENIDGKNLTCM 237 (566)
Q Consensus 159 ~i~vl~~G~i~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (566)
||++|++|+++ +.|+++++......... .+. +. . . ...
T Consensus 614 rii~L~~G~iv~~~G~~~e~~~~~~~~~~---~~~------------l~---~---~-----~~~--------------- 652 (986)
T 2iw3_A 614 YIINYEGLKLRKYKGNFTEFVKKCPAAKA---YEE------------LS---N---T-----DLE--------------- 652 (986)
T ss_dssp EEEEEETTEEEEEESCHHHHHHHCGGGGG---SSS------------TT---T---C-----CCC---------------
T ss_pred EEEEEECCeeecCCCCHHHHHhhhHHHHH---HHh------------hh---h---h-----hhh---------------
Confidence 99999999997 68998887532110000 000 00 0 0 000
Q ss_pred hhhhHHHHHHHHHHHHhhhhheeeccCCeeeeeeccchhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCC
Q psy7366 238 ACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNLHPV 317 (566)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (566)
. ..
T Consensus 653 --------------------------------------------------------------------------~---~~ 655 (986)
T 2iw3_A 653 --------------------------------------------------------------------------F---KF 655 (986)
T ss_dssp --------------------------------------------------------------------------C---CC
T ss_pred --------------------------------------------------------------------------c---cc
Confidence 0 00
Q ss_pred CCCCcchhHHHHHHhhhcCCCCCCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCC
Q psy7366 318 PVSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 397 (566)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~ 397 (566)
+....... . ......+|+++|+++.|+. +.+++|+|+||+|++|+++||+||||||||||+|+|+|+++
T Consensus 656 p~~~~~~~-------~--~~~~~~mL~v~nLs~~Y~g--~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~ 724 (986)
T 2iw3_A 656 PEPGYLEG-------V--KTKQKAIVKVTNMEFQYPG--TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL 724 (986)
T ss_dssp CCCCCCTT-------C--CSTTSEEEEEEEEEECCTT--CSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC
T ss_pred cccccccc-------c--ccCCCceEEEEeeEEEeCC--CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 00000000 0 0011237999999999962 12579999999999999999999999999999999999999
Q ss_pred CCccEEEEcCccCCCchHHhcCceEEEecCCC----CCCCCCHHHHHHHHHHh---------------------------
Q psy7366 398 PTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDA----LNDRLTPREHLEFYSRV--------------------------- 446 (566)
Q Consensus 398 ~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~----l~~~~tv~e~l~~~~~~--------------------------- 446 (566)
|++|+|+++|.. +++|++|++. .....|+.+++.+....
T Consensus 725 P~sG~I~~~~~~----------~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~ 794 (986)
T 2iw3_A 725 PTSGEVYTHENC----------RIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFK 794 (986)
T ss_dssp CSEEEEEECTTC----------CEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEE
T ss_pred CCceEEEEcCcc----------ceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccc
Confidence 999999998631 4777777641 11234666655432100
Q ss_pred --------------------------------------------------------------------------cCCCch
Q psy7366 447 --------------------------------------------------------------------------RNVPSV 452 (566)
Q Consensus 447 --------------------------------------------------------------------------~~~~~~ 452 (566)
.+....
T Consensus 795 ~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~ 874 (986)
T 2iw3_A 795 IEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRP 874 (986)
T ss_dssp ETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred cccchhhhhhhhhhhhhcccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccch
Confidence 000000
Q ss_pred HHHHHHHHHHHHcCCCC-c-cccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEE
Q psy7366 453 LLNTIVNESLNKFALGH-Y-SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV 530 (566)
Q Consensus 453 ~~~~~~~~~l~~~~l~~-~-~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tv 530 (566)
...+.+.++++.+||.. . .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++ +.||
T Consensus 875 ~~~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tV 951 (986)
T 2iw3_A 875 LTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGV 951 (986)
T ss_dssp CCHHHHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEE
T ss_pred hHHHHHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEE
Confidence 11345788999999975 3 58899999999999999999999999999999999999999999998888765 6799
Q ss_pred EEEccCHHHHHhhCCEEEEEECCEEEEecC
Q psy7366 531 ILTSHNMEECEALCTKLTIMVNGQFTCLGS 560 (566)
Q Consensus 531 l~vsHd~~~~~~~~drv~~l~~G~i~~~g~ 560 (566)
|+||||++++..+|||+++|++|+++..|+
T Consensus 952 IiISHD~e~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 952 IIITHSAEFTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp EEECSCHHHHTTTCCEEECCBTTBCCC---
T ss_pred EEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999988775
No 5
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=2.6e-67 Score=627.86 Aligned_cols=216 Identities=22% Similarity=0.412 Sum_probs=181.5
Q ss_pred eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY 420 (566)
Q Consensus 342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~ 420 (566)
.++++|+++.|+... +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|++
T Consensus 1030 ~i~~~~v~~~y~~~~-~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 1108 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTRP-SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQ 1108 (1284)
T ss_dssp CEEEEEEEBCCSCGG-GCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTS
T ss_pred cEEEEEEEEECCCCC-CCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhc
Confidence 599999999997321 2469999999999999999999999999999999999999999999999999976 45667889
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCC-----------ccccCcCcCChhHHHHHHHH
Q psy7366 421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH-----------YSDREVRTLSGGNKRKLSTA 489 (566)
Q Consensus 421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqrv~la 489 (566)
++||||++.+|+ .||+||+.++........ +.+.+.++..++.+ .......+|||||||||+||
T Consensus 1109 i~~v~Q~~~l~~-~ti~eNi~~~~~~~~~~~----~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iA 1183 (1284)
T 3g5u_A 1109 LGIVSQEPILFD-CSIAENIAYGDNSRVVSY----EEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIA 1183 (1284)
T ss_dssp CEEEESSCCCCS-SBHHHHHTCCCSSCCCCH----HHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHH
T ss_pred eEEECCCCcccc-ccHHHHHhccCCCCCCCH----HHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHH
Confidence 999999998875 599999976432111222 22334444444322 22334568999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366 490 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 565 (566)
Q Consensus 490 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~ 565 (566)
|||+.+|+||||||||+|||+.+.+.+++.|+++ .+|+|||+||||++++.. ||||++|++|++++.|+++++.
T Consensus 1184 Ral~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~i~~-~dri~vl~~G~i~~~g~~~~l~ 1257 (1284)
T 3g5u_A 1184 RALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLSTIQN-ADLIVVIQNGKVKEHGTHQQLL 1257 (1284)
T ss_dssp HHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTGGGS-CSEEEEEETBEEEEEECHHHHH
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999875 458999999999999865 9999999999999999998763
No 6
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2.4e-66 Score=621.06 Aligned_cols=216 Identities=25% Similarity=0.371 Sum_probs=186.3
Q ss_pred eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY 420 (566)
Q Consensus 342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~ 420 (566)
.|+++|++++|+.+ .+.++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.. ....+|++
T Consensus 1076 ~I~f~nVsf~Y~~~-~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~ 1154 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPER-PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQ 1154 (1321)
T ss_dssp CEEEEEEEECCTTS-CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTT
T ss_pred eEEEEEEEEeCCCC-CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhh
Confidence 59999999999742 24579999999999999999999999999999999999999999999999999987 56788999
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCC-------ccccC----cCcCChhHHHHHHHH
Q psy7366 421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH-------YSDRE----VRTLSGGNKRKLSTA 489 (566)
Q Consensus 421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~----~~~LSgGqkqrv~la 489 (566)
|+||||+|.+|+. |++|||.++... ....++.+.++++..++.+ -.+.. ..+||||||||++||
T Consensus 1155 i~~V~Qdp~LF~g-TIreNI~~gld~----~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiA 1229 (1321)
T 4f4c_A 1155 IAIVSQEPTLFDC-SIAENIIYGLDP----SSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIA 1229 (1321)
T ss_dssp EEEECSSCCCCSE-EHHHHHSSSSCT----TTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHH
T ss_pred eEEECCCCEeeCc-cHHHHHhccCCC----CCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHH
Confidence 9999999999987 999999764311 1112344666677666532 23443 457999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366 490 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 565 (566)
Q Consensus 490 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~ 565 (566)
|||+++|+|||||||||+||+++.+.|++.|+++. +|+|+|+|+|.++.+.. ||||+||++|+|++.|++++|.
T Consensus 1230 RAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsTi~~-aD~I~Vld~G~IvE~Gth~eLl 1303 (1321)
T 4f4c_A 1230 RALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNTVMN-ADCIAVVSNGTIIEKGTHTQLM 1303 (1321)
T ss_dssp HHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSSTTTT-CSEEEEESSSSEEEEECHHHHH
T ss_pred HHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHHHHh-CCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999998753 48999999999999876 9999999999999999999874
No 7
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-65 Score=566.47 Aligned_cols=352 Identities=20% Similarity=0.260 Sum_probs=270.3
Q ss_pred HHHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEec
Q psy7366 68 NTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTS 147 (566)
Q Consensus 68 ~~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiis 147 (566)
.++++++++.+||+..+++++.+|||||||||+||+||+.+|++|||||||++||+.++.++.++|++++++|+|||+||
T Consensus 199 ~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vt 278 (608)
T 3j16_B 199 PEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVE 278 (608)
T ss_dssp HHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEEC
T ss_pred HHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 46788999999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred CChhHHHhhcCEEEEEeCCEEEEecChhHHHhhccCccccCCCCCCCCccchhHHHhhccCCCCccccCCCccccccccc
Q psy7366 148 HNMEECEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRALNDGSGSGIRNSARPEVSGFYNE 227 (566)
Q Consensus 148 H~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (566)
||++++..+||||++|++|..++.... .+ ....+....+...
T Consensus 279 Hdl~~~~~~~drv~vl~~~~~~~~~~~---------~~----------~~~~~~~~~~~~~------------------- 320 (608)
T 3j16_B 279 HDLSVLDYLSDFVCIIYGVPSVYGVVT---------LP----------ASVREGINIFLDG------------------- 320 (608)
T ss_dssp SCHHHHHHHCSEEEEEESCTTTEEEEC---------CC----------EEHHHHHHHHHHT-------------------
T ss_pred CCHHHHHHhCCEEEEEeCCccccceec---------Cc----------hhHHHHHHHhhcc-------------------
Confidence 999999999999999987653211000 00 0000000000000
Q ss_pred ccCCccchhhhhhhHHHHHHHHHHHHhhhhheeeccCCeeeeeeccchhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy7366 228 NIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHGALYSAINLSIEYKVFSR 307 (566)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (566)
.. .....
T Consensus 321 -------------------------------~~-~~~~~----------------------------------------- 327 (608)
T 3j16_B 321 -------------------------------HI-PAENL----------------------------------------- 327 (608)
T ss_dssp -------------------------------EE-TTTTE-----------------------------------------
T ss_pred -------------------------------cc-chhhh-----------------------------------------
Confidence 00 00000
Q ss_pred hhcccccCCCCCCCcchhHHHHHHhhhcCCCCCCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCC-----cEEEEEcCCC
Q psy7366 308 CFTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRG-----ECFGLLGLNG 382 (566)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~G-----e~~~l~G~NG 382 (566)
.............. .....+...++++.|+. ...+++++||++.+| |++||+||||
T Consensus 328 ---~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~y~~---~~~~l~~vsl~v~~G~~~~GEiv~iiG~NG 388 (608)
T 3j16_B 328 ---RFRTEALQFRIADA-------------TEDLQNDSASRAFSYPS---LKKTQGDFVLNVEEGEFSDSEILVMMGENG 388 (608)
T ss_dssp ---ECSSSCCCCCCSSS-------------SCCCCCCSSSSCCEECC---EEEECSSCEEEECCEECCTTCEEEEESCTT
T ss_pred ---cccccccccccccc-------------ccceeeeccceeEEecC---cccccCceEEEEecCccccceEEEEECCCC
Confidence 00000000000000 00001111455666752 245789999999998 7899999999
Q ss_pred CcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHH
Q psy7366 383 AGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 462 (566)
Q Consensus 383 sGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l 462 (566)
||||||+|+|+|+++|++|+. +. +..++|+||+.......|+.+++... ..... .....+.+++
T Consensus 389 sGKSTLlk~l~Gl~~p~~G~~------~~------~~~i~~~~q~~~~~~~~tv~e~~~~~--~~~~~--~~~~~~~~~l 452 (608)
T 3j16_B 389 TGKTTLIKLLAGALKPDEGQD------IP------KLNVSMKPQKIAPKFPGTVRQLFFKK--IRGQF--LNPQFQTDVV 452 (608)
T ss_dssp SSHHHHHHHHHTSSCCSBCCC------CC------SCCEEEECSSCCCCCCSBHHHHHHHH--CSSTT--TSHHHHHHTH
T ss_pred CcHHHHHHHHhcCCCCCCCcC------cc------CCcEEEecccccccCCccHHHHHHHH--hhccc--ccHHHHHHHH
Confidence 999999999999999999962 11 23699999997766667999987532 11111 1124567899
Q ss_pred HHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCHHHHH
Q psy7366 463 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS-EGRCVILTSHNMEECE 541 (566)
Q Consensus 463 ~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~tvl~vsHd~~~~~ 541 (566)
+.+++.+..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++.+ .|.|||+||||++++.
T Consensus 453 ~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~ 532 (608)
T 3j16_B 453 KPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMAT 532 (608)
T ss_dssp HHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHH
T ss_pred HHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999864 5999999999999999
Q ss_pred hhCCEEEEEEC--CEEEEecCccccc
Q psy7366 542 ALCTKLTIMVN--GQFTCLGSATHLK 565 (566)
Q Consensus 542 ~~~drv~~l~~--G~i~~~g~~~~l~ 565 (566)
.+|||+++|++ |+++..|+|+++.
T Consensus 533 ~~aDrvivl~~~~g~~~~~g~p~~~~ 558 (608)
T 3j16_B 533 YLADKVIVFEGIPSKNAHARAPESLL 558 (608)
T ss_dssp HHCSEEEECEEETTTEEECCCCEEHH
T ss_pred HhCCEEEEEeCCCCeEEecCChHHHh
Confidence 99999999986 8999999998763
No 8
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=4.5e-64 Score=566.80 Aligned_cols=381 Identities=20% Similarity=0.275 Sum_probs=267.8
Q ss_pred cceeEEcCCCCC-------------------CCCCCHHHHHHHHHHhc--CCChh-------hHHHHHHHHHHHcCCCcc
Q psy7366 32 SYIGYCPQFDAL-------------------NDRLTPREHLEFYSRVR--NVPSV-------LLNTIVNESLNKFALGHY 83 (566)
Q Consensus 32 ~~ig~v~Q~~~l-------------------~~~~tv~e~l~~~~~~~--~~~~~-------~~~~~~~~~l~~~gl~~~ 83 (566)
..+|+++|.+.+ ++.+||.||+.+..... ..... ++.++ .++++.+||++.
T Consensus 116 ~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~gL~~~ 194 (670)
T 3ux8_A 116 STVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDR-LGFLQNVGLDYL 194 (670)
T ss_dssp CBHHHHTTCC-------------------------CC--------------------------CHHH-HHHHHHTTCTTC
T ss_pred hceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHH-HHHHHHcCCchh
Confidence 457777776543 34679999998753221 11000 11112 246889999864
Q ss_pred -cccccccCChhHHHHHHHHHHHhCCCC--EEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhcCEE
Q psy7366 84 -SDREVRTLSGGNKRKLSTAIALLGNPP--LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKL 160 (566)
Q Consensus 84 -~~~~~~~LSgG~kqrl~iA~al~~~p~--vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~d~i 160 (566)
+++++.+|||||||||+||+||+.+|+ +|||||||+||||.++.++.++|++++++|.|||+||||++++. .||||
T Consensus 195 ~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~i 273 (670)
T 3ux8_A 195 TLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADYL 273 (670)
T ss_dssp CTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHH-HCSEE
T ss_pred hhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh-hCCEE
Confidence 799999999999999999999999998 99999999999999999999999999888999999999999876 59999
Q ss_pred EEE------eCCEEEEecChhHHHhhccCccccCCCCCCCCccchhHHHhhccCCCCccccCCCcccccccccccCCccc
Q psy7366 161 TIM------VNGQFTCLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRALNDGSGSGIRNSARPEVSGFYNENIDGKNL 234 (566)
Q Consensus 161 ~vl------~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (566)
++| ++|++++.|+++++....... ....+...
T Consensus 274 i~l~~g~~~~~G~i~~~g~~~~~~~~~~~~----------------~~~~~~~~-------------------------- 311 (670)
T 3ux8_A 274 IDIGPGAGIHGGEVVAAGTPEEVMNDPNSL----------------TGQYLSGK-------------------------- 311 (670)
T ss_dssp EEECSSSGGGCCSEEEEECHHHHHTCTTCH----------------HHHHHTTS--------------------------
T ss_pred EEecccccccCCEEEEecCHHHHhcCchhH----------------HHHHhccc--------------------------
Confidence 999 899999999998875321000 00000000
Q ss_pred hhhhhhhHHHHHHHHHHHHhhhhheeeccCCeeeeeeccchhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q psy7366 235 TCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNL 314 (566)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (566)
.
T Consensus 312 ------------------------------------------------------------------------------~- 312 (670)
T 3ux8_A 312 ------------------------------------------------------------------------------K- 312 (670)
T ss_dssp ------------------------------------------------------------------------------S-
T ss_pred ------------------------------------------------------------------------------c-
Confidence 0
Q ss_pred CCCCCCCcchhHHHHHHhhhcCCCCCCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH-
Q psy7366 315 HPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT- 393 (566)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~- 393 (566)
........ .......+.+.+. ...+|+||||+|++||+++|+||||||||||+++|.
T Consensus 313 -~~~~~~~~------------~~~~~~~~~~~~~---------~~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~ 370 (670)
T 3ux8_A 313 -FIPIPAER------------RRPDGRWLEVVGA---------REHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLY 370 (670)
T ss_dssp -CCCCCSSC------------CCCCSCEEEEEEE---------CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHH
T ss_pred -cccccccc------------ccccccceeecCc---------cccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHH
Confidence 00000000 0001123444332 245899999999999999999999999999998754
Q ss_pred ---------------------CCCCCCccEEEEcCccCCCchH----H--------------------------------
Q psy7366 394 ---------------------GAIKPTSGNAYVMNHSIRDSMD----L-------------------------------- 416 (566)
Q Consensus 394 ---------------------G~~~~~~G~i~~~g~~~~~~~~----~-------------------------------- 416 (566)
|+..+ +|.|.+++.++..... .
T Consensus 371 ~~~~~~~~~~~~~~g~~~~i~gl~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (670)
T 3ux8_A 371 KALAQKLHRAKAKPGEHRDIRGLEHL-DKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNV 449 (670)
T ss_dssp HHHHHHHHCCCSCCCSCSEEECGGGC-SEEEECCSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTS
T ss_pred HHHHHHhhhccccccccccccccccc-CceeEeccccCCCCCCcchhhhhhhhHHHHHHhcccchhhhcccccccccccC
Confidence 44443 4688888877642110 0
Q ss_pred ------hcCceEEEecCCCCCC--------------------------------CCCHHHHHHHHHHhcCCCchHHHHHH
Q psy7366 417 ------VRSYIGYCPQFDALND--------------------------------RLTPREHLEFYSRVRNVPSVLLNTIV 458 (566)
Q Consensus 417 ------~~~~i~~v~q~~~l~~--------------------------------~~tv~e~l~~~~~~~~~~~~~~~~~~ 458 (566)
.....|+++|+..+++ .+|+.||+.+.... ....+.
T Consensus 450 ~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ltv~e~l~~~~~~------~~~~~~ 523 (670)
T 3ux8_A 450 KGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASI------PKIKRK 523 (670)
T ss_dssp TTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCBTTBCHHHHHTSBHHHHHHHTTTC------HHHHHH
T ss_pred CCCccccccccceEeeecccccccccccccccCcccChhhhheeecCCCHHHHhhCCHHHHHHHHHHh------hhHHHH
Confidence 0011244444332222 47899998775321 112345
Q ss_pred HHHHHHcCCCC-ccccCcCcCChhHHHHHHHHHHHcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEc
Q psy7366 459 NESLNKFALGH-YSDREVRTLSGGNKRKLSTAIALLGNP---PLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTS 534 (566)
Q Consensus 459 ~~~l~~~~l~~-~~~~~~~~LSgGqkqrv~la~al~~~p---~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vs 534 (566)
.+.+..+++.. ..++++.+|||||||||+|||||+.+| ++|||||||+|||+.++..++++|++++++|.|||+||
T Consensus 524 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vt 603 (670)
T 3ux8_A 524 LETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 603 (670)
T ss_dssp HHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 67888899964 568999999999999999999999887 49999999999999999999999999988899999999
Q ss_pred cCHHHHHhhCCEEEEE------ECCEEEEecCccccc
Q psy7366 535 HNMEECEALCTKLTIM------VNGQFTCLGSATHLK 565 (566)
Q Consensus 535 Hd~~~~~~~~drv~~l------~~G~i~~~g~~~~l~ 565 (566)
||++++. .||||++| ++|+|+++|+++++.
T Consensus 604 Hd~~~~~-~~d~i~~l~~~~g~~~G~i~~~g~~~~~~ 639 (670)
T 3ux8_A 604 HNLDVIK-TADYIIDLGPEGGDRGGQIVAVGTPEEVA 639 (670)
T ss_dssp CCHHHHT-TCSEEEEEESSSGGGCCEEEEEECHHHHH
T ss_pred CCHHHHH-hCCEEEEecCCcCCCCCEEEEecCHHHHH
Confidence 9999874 69999999 899999999998764
No 9
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=2.1e-58 Score=522.59 Aligned_cols=368 Identities=21% Similarity=0.312 Sum_probs=281.4
Q ss_pred CCCCHHHHHHHHHHhcCCCh----------hhHHHHHHHHHHHcCCCc-ccccccccCChhHHHHHHHHHHHhCCC--CE
Q psy7366 45 DRLTPREHLEFYSRVRNVPS----------VLLNTIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTAIALLGNP--PL 111 (566)
Q Consensus 45 ~~~tv~e~l~~~~~~~~~~~----------~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG~kqrl~iA~al~~~p--~v 111 (566)
..+||.|+++|+ ++.+++. .++.+++ +.|..+||+. .+++++.+|||||+|||+||++|..+| ++
T Consensus 450 ~~ltV~e~~~f~-e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~l 527 (972)
T 2r6f_A 450 TAMSVTEALAFF-DGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVL 527 (972)
T ss_dssp HTSBHHHHHHHH-HHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCE
T ss_pred hhCCHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCE
Confidence 468999999995 4555655 3456676 4689999986 489999999999999999999999985 99
Q ss_pred EEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhcCEEEEE------eCCEEEEecChhHHHhhccCcc
Q psy7366 112 IFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIM------VNGQFTCLGSATHLKSKSMALP 185 (566)
Q Consensus 112 LlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~d~i~vl------~~G~i~~~g~~~~~~~~~~~~~ 185 (566)
|||||||++|||.++++|+++|++|++.|.|||+||||++++. .||||++| ++|++++.|+++++.......
T Consensus 528 lILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~-~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~~~~sl- 605 (972)
T 2r6f_A 528 YVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSL- 605 (972)
T ss_dssp EEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHH-SCSEEEEECSSSGGGCCSEEEEECTTTTTTCTTCT-
T ss_pred EEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEeCCCccCCCCEEEEecCHHHHHhhhHHH-
Confidence 9999999999999999999999999888999999999999886 69999999 799999999987653210000
Q ss_pred ccCCCCCCCCccchhHHHhhccCCCCccccCCCcccccccccccCCccchhhhhhhHHHHHHHHHHHHhhhhheeeccCC
Q psy7366 186 VSGNDLGRGDPVRSELSRALNDGSGSGIRNSARPEVSGFYNENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNG 265 (566)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (566)
....+...
T Consensus 606 ---------------t~~~l~g~--------------------------------------------------------- 613 (972)
T 2r6f_A 606 ---------------TGQYLSGK--------------------------------------------------------- 613 (972)
T ss_dssp ---------------THHHHHTS---------------------------------------------------------
T ss_pred ---------------HHHHhcCC---------------------------------------------------------
Confidence 00000000
Q ss_pred eeeeeeccchhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCcchhHHHHHHhhhcCCCCCCeEEE
Q psy7366 266 TRLVAVNIWAWRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVV 345 (566)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 345 (566)
. ...... . + .......|++
T Consensus 614 -----------------------------------------------~--~~~~~~-~------~-----~~~~~~~L~v 632 (972)
T 2r6f_A 614 -----------------------------------------------K--FIPIPA-E------R-----RRPDGRWLEV 632 (972)
T ss_dssp -----------------------------------------------S--CCCCCS-S------C-----CCCCSCEEEE
T ss_pred -----------------------------------------------c--cccCcc-c------c-----ccccceEEEE
Confidence 0 000000 0 0 0011246889
Q ss_pred eeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH-CCC-------CCCcc-------------EEE
Q psy7366 346 KRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT-GAI-------KPTSG-------------NAY 404 (566)
Q Consensus 346 ~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~-G~~-------~~~~G-------------~i~ 404 (566)
++++. ..|+||||+|++|+++||+|+||||||||+++|+ |.+ .+..| .|.
T Consensus 633 ~~l~~---------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~ 703 (972)
T 2r6f_A 633 VGARE---------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVID 703 (972)
T ss_dssp EEECS---------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEE
T ss_pred ecCcc---------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEE
Confidence 88852 2699999999999999999999999999999864 221 12233 378
Q ss_pred EcCccCCCc----hH-------Hh---------cCceEEEecCCCCC---------------------------------
Q psy7366 405 VMNHSIRDS----MD-------LV---------RSYIGYCPQFDALN--------------------------------- 431 (566)
Q Consensus 405 ~~g~~~~~~----~~-------~~---------~~~i~~v~q~~~l~--------------------------------- 431 (566)
+++.++... .. .. .+.+||++|.+.+.
T Consensus 704 idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~ 783 (972)
T 2r6f_A 704 IDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCH 783 (972)
T ss_dssp ECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTT
T ss_pred EcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccc
Confidence 888776321 10 00 12357777754321
Q ss_pred -------------C--------CCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCC-ccccCcCcCChhHHHHHHHH
Q psy7366 432 -------------D--------RLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTA 489 (566)
Q Consensus 432 -------------~--------~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqrv~la 489 (566)
. .+|+.|++.++.. . . . ..+..++++.++|.. ..++++.+|||||||||+||
T Consensus 784 G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~---~-~-~-~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LA 857 (972)
T 2r6f_A 784 GKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFAS---I-P-K-IKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLA 857 (972)
T ss_dssp TCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCS---C-H-H-HHHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHH
T ss_pred cccccchhhhhhccCCCHHHhhhcCHHHHHHHHhc---c-h-h-HHHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHH
Confidence 1 3466677665321 1 1 1 234568899999987 78999999999999999999
Q ss_pred HHHcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEE------ECCEEEEecC
Q psy7366 490 IALLGNP---PLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIM------VNGQFTCLGS 560 (566)
Q Consensus 490 ~al~~~p---~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l------~~G~i~~~g~ 560 (566)
++|+.+| +||||||||+|||+.++..++++|++++++|.|||+||||++++ ..|||+++| ++|++++.|+
T Consensus 858 raL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i-~~aDrIivL~p~gG~~~G~Iv~~g~ 936 (972)
T 2r6f_A 858 AELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGT 936 (972)
T ss_dssp HHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEECSSSTTSCCSEEEEES
T ss_pred HHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEEcCCCCCCCCEEEEecC
Confidence 9999865 99999999999999999999999999988899999999999997 479999999 7899999999
Q ss_pred ccccc
Q psy7366 561 ATHLK 565 (566)
Q Consensus 561 ~~~l~ 565 (566)
++++.
T Consensus 937 ~~el~ 941 (972)
T 2r6f_A 937 PEEVA 941 (972)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88763
No 10
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=5.4e-58 Score=521.04 Aligned_cols=370 Identities=20% Similarity=0.271 Sum_probs=280.5
Q ss_pred CCCCCCHHHHHHHHHHhcCCCh----------hhHHHHHHHHHHHcCCCcc-cccccccCChhHHHHHHHHHHHhCC--C
Q psy7366 43 LNDRLTPREHLEFYSRVRNVPS----------VLLNTIVNESLNKFALGHY-SDREVRTLSGGNKRKLSTAIALLGN--P 109 (566)
Q Consensus 43 l~~~~tv~e~l~~~~~~~~~~~----------~~~~~~~~~~l~~~gl~~~-~~~~~~~LSgG~kqrl~iA~al~~~--p 109 (566)
.+..+||.|+++| .++.+++. .++.+++ +.|..+||+.. +++++.+|||||||||+||++|..+ |
T Consensus 465 q~~~ltV~e~l~f-~enl~l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~ 542 (993)
T 2ygr_A 465 EVCELSIADCADF-LNALTLGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVG 542 (993)
T ss_dssp CSSHHHHHHHHHT-TTTTTSCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCS
T ss_pred HHhhCCHHHHHHH-HHhcCCCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCC
Confidence 3456899999999 45556665 4556666 46899999864 8999999999999999999999998 5
Q ss_pred CEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhcCEEEEE------eCCEEEEecChhHHHhhccC
Q psy7366 110 PLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIM------VNGQFTCLGSATHLKSKSMA 183 (566)
Q Consensus 110 ~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~d~i~vl------~~G~i~~~g~~~~~~~~~~~ 183 (566)
++|||||||++|||.++++|+++|++|++.|.|||+||||++++. .||||++| ++|++++.|+++++......
T Consensus 543 ~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~-~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~~~~~ 621 (993)
T 2ygr_A 543 VLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIE-HADWIVDIGPGAGEHGGRIVHSGPYDELLRNKDS 621 (993)
T ss_dssp CEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHH-TCSEEEEECSSSGGGCCSCCEEECHHHHHHCTTC
T ss_pred cEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHH-hCCEEEEecCccccCCCEEEEeeCHHHhhhhhHH
Confidence 999999999999999999999999999989999999999999876 69999999 79999999999987542100
Q ss_pred ccccCCCCCCCCccchhHHHhhccCCCCccccCCCcccccccccccCCccchhhhhhhHHHHHHHHHHHHhhhhheeecc
Q psy7366 184 LPVSGNDLGRGDPVRSELSRALNDGSGSGIRNSARPEVSGFYNENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRS 263 (566)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (566)
. ....+...
T Consensus 622 l----------------t~~~l~g~------------------------------------------------------- 630 (993)
T 2ygr_A 622 I----------------TGAYLSGR------------------------------------------------------- 630 (993)
T ss_dssp H----------------HHHHHHTS-------------------------------------------------------
T ss_pred H----------------HHHHhccC-------------------------------------------------------
Confidence 0 00000000
Q ss_pred CCeeeeeeccchhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCcchhHHHHHHhhhcCCCCCCeE
Q psy7366 264 NGTRLVAVNIWAWRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVL 343 (566)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 343 (566)
. ........ + .......|
T Consensus 631 -------------------------------------------------~--~~~~~~~~------~-----~~~~~~~L 648 (993)
T 2ygr_A 631 -------------------------------------------------E--SIEIPAIR------R-----SVDPRRQL 648 (993)
T ss_dssp -------------------------------------------------S--CCCCCSSC------C-----CCCSSSEE
T ss_pred -------------------------------------------------c--cccCcccc------c-----cCCCCceE
Confidence 0 00000000 0 00002468
Q ss_pred EEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH-CC----CC---CCccE-------------
Q psy7366 344 VVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT-GA----IK---PTSGN------------- 402 (566)
Q Consensus 344 ~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~-G~----~~---~~~G~------------- 402 (566)
++++++. .+|+||||+|++|+++||+|+||||||||+++|+ |. +. +..|.
T Consensus 649 ~v~~l~~---------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~ 719 (993)
T 2ygr_A 649 TVVGARE---------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKL 719 (993)
T ss_dssp EEEEECS---------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEE
T ss_pred EEecCcc---------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceE
Confidence 8998841 2699999999999999999999999999999853 22 21 23343
Q ss_pred EEEcCccCCC----chH-------Hh---------cCceEEEecCCCCC-------------------------------
Q psy7366 403 AYVMNHSIRD----SMD-------LV---------RSYIGYCPQFDALN------------------------------- 431 (566)
Q Consensus 403 i~~~g~~~~~----~~~-------~~---------~~~i~~v~q~~~l~------------------------------- 431 (566)
|.+++.++.. +.. .. .+..||++|.+.+.
T Consensus 720 i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~ 799 (993)
T 2ygr_A 720 VRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEV 799 (993)
T ss_dssp ECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTT
T ss_pred EEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeehh
Confidence 4556655521 110 00 12357777754321
Q ss_pred ---------------C--------CCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCC-ccccCcCcCChhHHHHHH
Q psy7366 432 ---------------D--------RLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH-YSDREVRTLSGGNKRKLS 487 (566)
Q Consensus 432 ---------------~--------~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqrv~ 487 (566)
. .+|+.|++.++.. . . . ..+..++++.++|.. ..++++.+|||||||||+
T Consensus 800 c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~---~-~-~-~~~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~ 873 (993)
T 2ygr_A 800 CQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEP---I-A-G-VHRYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVK 873 (993)
T ss_dssp TTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTT---C-H-H-HHHHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHH
T ss_pred ccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhc---c-h-H-HHHHHHHHHHcCCCcccccCccccCCHHHHHHHH
Confidence 1 2456666655321 1 1 1 234568899999986 679999999999999999
Q ss_pred HHHHHcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEE------ECCEEEEe
Q psy7366 488 TAIALLGNP---PLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIM------VNGQFTCL 558 (566)
Q Consensus 488 la~al~~~p---~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l------~~G~i~~~ 558 (566)
||++|+.+| +||||||||+|||+.++..++++|++++++|.|||+||||++++ ..|||+++| ++|++++.
T Consensus 874 LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i-~~aDrIivL~p~gg~~~G~Iv~~ 952 (993)
T 2ygr_A 874 LASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVI-KTSDWIIDLGPEGGAGGGTVVAQ 952 (993)
T ss_dssp HHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEEESSSTTSCSEEEEE
T ss_pred HHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEECCCcCCCCCEEEEe
Confidence 999999865 99999999999999999999999999988899999999999997 579999999 68999999
Q ss_pred cCcccc
Q psy7366 559 GSATHL 564 (566)
Q Consensus 559 g~~~~l 564 (566)
|+++++
T Consensus 953 G~~~el 958 (993)
T 2ygr_A 953 GTPEDV 958 (993)
T ss_dssp ECHHHH
T ss_pred cCHHHH
Confidence 998876
No 11
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.6e-56 Score=508.33 Aligned_cols=370 Identities=22% Similarity=0.281 Sum_probs=276.4
Q ss_pred CCCCCHHHHHHHHHHhcCCChhh---------HHHHHHHHHHHcCCCcc-cccccccCChhHHHHHHHHHHHhCCCC--E
Q psy7366 44 NDRLTPREHLEFYSRVRNVPSVL---------LNTIVNESLNKFALGHY-SDREVRTLSGGNKRKLSTAIALLGNPP--L 111 (566)
Q Consensus 44 ~~~~tv~e~l~~~~~~~~~~~~~---------~~~~~~~~l~~~gl~~~-~~~~~~~LSgG~kqrl~iA~al~~~p~--v 111 (566)
+..+++.+++.|... ..++..+ ...+..+.|..+||... +++++.+|||||||||+||+||+.+|+ +
T Consensus 409 ~~~~~v~~~l~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~l 487 (916)
T 3pih_A 409 FTELSISEELEFLKN-LNLTEREREIVGELLKEIEKRLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVI 487 (916)
T ss_dssp HHHSBHHHHHHHHHS-CCCCTTTTTTHHHHHHHHHHHHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCE
T ss_pred hhhCCHHHHHHHHHh-ccCcHHHHHHHHhhHHHHHHHHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcE
Confidence 445789999987532 2222111 11234567888999864 799999999999999999999999887 9
Q ss_pred EEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhcCEEEEE------eCCEEEEecChhHHHhhccCcc
Q psy7366 112 IFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIM------VNGQFTCLGSATHLKSKSMALP 185 (566)
Q Consensus 112 LlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~d~i~vl------~~G~i~~~g~~~~~~~~~~~~~ 185 (566)
|||||||+||||..+++|.++|++++++|.|||+||||++++.. ||||++| ++|++++.|+++++......
T Consensus 488 llLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~~-aD~ii~lgpgag~~~G~iv~~G~~~e~~~~~~~-- 564 (916)
T 3pih_A 488 YVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIRN-ADHIIDIGPGGGTNGGRVVFQGTVDELLKNPDS-- 564 (916)
T ss_dssp EEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHHT-CSEEEEEESSSGGGCSEEEEEECHHHHHHSCTT--
T ss_pred EEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh-CCEEEEEcCCcccCCCEEEEeechhhhhcCchh--
Confidence 99999999999999999999999998889999999999998875 9999999 89999999999987543110
Q ss_pred ccCCCCCCCCccchhHHHhhccCCCCccccCCCcccccccccccCCccchhhhhhhHHHHHHHHHHHHhhhhheeeccCC
Q psy7366 186 VSGNDLGRGDPVRSELSRALNDGSGSGIRNSARPEVSGFYNENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNG 265 (566)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (566)
......+....
T Consensus 565 -------------~~~~~~l~~~~-------------------------------------------------------- 575 (916)
T 3pih_A 565 -------------SLTGEYLSGKR-------------------------------------------------------- 575 (916)
T ss_dssp -------------CHHHHHHHSSS--------------------------------------------------------
T ss_pred -------------cchhhhhhccc--------------------------------------------------------
Confidence 00000000000
Q ss_pred eeeeeeccchhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCcchhHHHHHHhhhcCCCCCCeEEE
Q psy7366 266 TRLVAVNIWAWRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVV 345 (566)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 345 (566)
..... .. .......+.+
T Consensus 576 --------------------------------------------------~~~~~-~~------------~~~~~~~l~v 592 (916)
T 3pih_A 576 --------------------------------------------------KITVN-KT------------RRLPYASLKI 592 (916)
T ss_dssp --------------------------------------------------CCCCC-SS------------CCCCSSEEEE
T ss_pred --------------------------------------------------ccccc-cc------------cccccceEEE
Confidence 00000 00 0001224566
Q ss_pred eeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHH---------HHHHCCCCCC------cc------EEE
Q psy7366 346 KRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTF---------KMLTGAIKPT------SG------NAY 404 (566)
Q Consensus 346 ~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl---------~~i~G~~~~~------~G------~i~ 404 (566)
++.+ ...|+|+||+|++|++++|+||||||||||+ +++.|...+. +| .+.
T Consensus 593 ~~~~---------~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~ 663 (916)
T 3pih_A 593 KGVR---------HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIA 663 (916)
T ss_dssp EEEC---------STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEE
T ss_pred eeec---------cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEe
Confidence 5542 3469999999999999999999999999997 4555544333 22 244
Q ss_pred EcCccCCCc----hH--------------------------------------HhcCceEEEecCCCCCC----------
Q psy7366 405 VMNHSIRDS----MD--------------------------------------LVRSYIGYCPQFDALND---------- 432 (566)
Q Consensus 405 ~~g~~~~~~----~~--------------------------------------~~~~~i~~v~q~~~l~~---------- 432 (566)
++..++... .. ......||++++..+++
T Consensus 664 idq~pig~~~rs~~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~ 743 (916)
T 3pih_A 664 IDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCK 743 (916)
T ss_dssp ECSCCCCCCTTCCHHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTT
T ss_pred eccccccccccccccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeeccccc
Confidence 444443210 00 00134578877765544
Q ss_pred ----------------------CCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCC-ccccCcCcCChhHHHHHHHH
Q psy7366 433 ----------------------RLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTA 489 (566)
Q Consensus 433 ----------------------~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqrv~la 489 (566)
.+|+.|++.|+.. . ....++.++|+.+||.. ..++++.+|||||||||+||
T Consensus 744 g~r~~~e~l~i~~~g~~i~~vl~~tv~eal~f~~~---~---~~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LA 817 (916)
T 3pih_A 744 GKRYNRETLEITYKGKNISDILDMTVDEALEFFKN---I---PSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLA 817 (916)
T ss_dssp TSCBCTTGGGCCBTTBCHHHHHSSBHHHHHHHTTT---C---HHHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHH
T ss_pred ccccchhhhhhhhccCCHHHHhhCCHHHHHHHHhc---c---hhHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHH
Confidence 3677787776532 1 12345678999999974 46899999999999999999
Q ss_pred HHHcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEE------ECCEEEEecC
Q psy7366 490 IALLGNP---PLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIM------VNGQFTCLGS 560 (566)
Q Consensus 490 ~al~~~p---~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l------~~G~i~~~g~ 560 (566)
|||+.+| +||||||||+|||+.+++.++++|++++++|.|||+||||++++.. ||+|++| ++|+|++.|+
T Consensus 818 raL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~-ADrIivLgp~gg~~~G~Iv~~Gt 896 (916)
T 3pih_A 818 SELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKN-ADHIIDLGPEGGKEGGYIVATGT 896 (916)
T ss_dssp HHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT-CSEEEEEESSSGGGCCEEEEEES
T ss_pred HHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh-CCEEEEecCCCCCCCCEEEEEcC
Confidence 9999875 7999999999999999999999999998889999999999999865 9999999 8999999999
Q ss_pred ccccc
Q psy7366 561 ATHLK 565 (566)
Q Consensus 561 ~~~l~ 565 (566)
++++.
T Consensus 897 peel~ 901 (916)
T 3pih_A 897 PEEIA 901 (916)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99874
No 12
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=4e-57 Score=512.26 Aligned_cols=350 Identities=21% Similarity=0.271 Sum_probs=266.1
Q ss_pred hHHHHHHHHHHHcCCCcc-cccccccCChhHHHHHHHHHHHhCCC--CEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q psy7366 66 LLNTIVNESLNKFALGHY-SDREVRTLSGGNKRKLSTAIALLGNP--PLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC 142 (566)
Q Consensus 66 ~~~~~~~~~l~~~gl~~~-~~~~~~~LSgG~kqrl~iA~al~~~p--~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~t 142 (566)
++.++++ .+..+||+.. +++++.+|||||||||+||++|+.+| ++|||||||++||+.++++|+++|++|++.|.|
T Consensus 355 ei~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~T 433 (842)
T 2vf7_A 355 DLVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNS 433 (842)
T ss_dssp HHHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCE
T ss_pred HHHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCE
Confidence 4667776 6889999864 89999999999999999999999999 599999999999999999999999999888999
Q ss_pred EEEecCChhHHHhhcCEEEEE------eCCEEEEecChhHHHhhccCccccCCCCCCCCccchhHHHhhccCCCCccccC
Q psy7366 143 VILTSHNMEECEALCTKLTIM------VNGQFTCLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRALNDGSGSGIRNS 216 (566)
Q Consensus 143 viiisH~~~~~~~~~d~i~vl------~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (566)
||+||||++++. .||+|++| ++|++++.|+++++...... .....+..
T Consensus 434 VIvVeHdl~~l~-~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~~~~~----------------~~~~~l~~--------- 487 (842)
T 2vf7_A 434 LFVVEHDLDVIR-RADWLVDVGPEAGEKGGEILYSGPPEGLKHVPES----------------QTGQYLFA--------- 487 (842)
T ss_dssp EEEECCCHHHHT-TCSEEEEECSSSGGGCCSEEEEECGGGGGGCTTC----------------HHHHHHHT---------
T ss_pred EEEEcCCHHHHH-hCCEEEEeCCCcccCCCEEEEecCHHHHHhchHH----------------HHHHHhhh---------
Confidence 999999999775 69999999 79999999998875421000 00000000
Q ss_pred CCcccccccccccCCccchhhhhhhHHHHHHHHHHHHhhhhheeeccCCeeeeeeccchhhchHHHHHHHHHHHHHHHHH
Q psy7366 217 ARPEVSGFYNENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHGALYSAI 296 (566)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (566)
T Consensus 488 -------------------------------------------------------------------------------- 487 (842)
T 2vf7_A 488 -------------------------------------------------------------------------------- 487 (842)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhhhcccccCCCCCCCcchhHHHHHHhhhcCCCCCCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEE
Q psy7366 297 NLSIEYKVFSRCFTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFG 376 (566)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~ 376 (566)
. .... ... .......|+++++++ .+|+|+||+|++|+++|
T Consensus 488 ---------------~--~~~~--~~~------------~~~~~~~L~v~~l~~---------~~L~~vsl~i~~Geiv~ 527 (842)
T 2vf7_A 488 ---------------D--RHTE--PHT------------PREPAGWLELNGVTR---------NNLDNLDVRFPLGVMTS 527 (842)
T ss_dssp ---------------C--CCCC--CCC------------CCCCSCEEEEEEEEE---------TTEEEEEEEEESSSEEE
T ss_pred ---------------c--cccc--ccc------------cCCCCceEEEEeeee---------cccccceEEEcCCCEEE
Confidence 0 0000 000 001124699999964 15999999999999999
Q ss_pred EEcCCCCcHHHHHHH-HHCCC-------CC------------------Ccc-------EEEEcCccCCCch---------
Q psy7366 377 LLGLNGAGKTTTFKM-LTGAI-------KP------------------TSG-------NAYVMNHSIRDSM--------- 414 (566)
Q Consensus 377 l~G~NGsGKSTLl~~-i~G~~-------~~------------------~~G-------~i~~~g~~~~~~~--------- 414 (566)
|+|+||||||||+++ |+|++ +| .+| .|.+++.++....
T Consensus 528 I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~ 607 (842)
T 2vf7_A 528 VTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTG 607 (842)
T ss_dssp EECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSS
T ss_pred EEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccCcccccceEEEECCeeCCCCccccchhhhh
Confidence 999999999999996 76543 23 356 6888888774311
Q ss_pred --HHhcC---------ceEEEec----------------------CCCCC------------------------CCCCHH
Q psy7366 415 --DLVRS---------YIGYCPQ----------------------FDALN------------------------DRLTPR 437 (566)
Q Consensus 415 --~~~~~---------~i~~v~q----------------------~~~l~------------------------~~~tv~ 437 (566)
..+|. ..||.++ +..++ ...|+.
T Consensus 608 ~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~ 687 (842)
T 2vf7_A 608 LFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIA 687 (842)
T ss_dssp THHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHH
T ss_pred HHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhhhcCCccceecccccCcccchhhHhhhhcCCCHH
Confidence 11111 1122222 11111 234555
Q ss_pred HHHHHHH----HhcCCCchHHHHHHHHHHHHcCCCC-ccccCcCcCChhHHHHHHHHHHHcCC---CCEEEEeCCCCCCC
Q psy7366 438 EHLEFYS----RVRNVPSVLLNTIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTAIALLGN---PPLIFLDEPTSGMD 509 (566)
Q Consensus 438 e~l~~~~----~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqrv~la~al~~~---p~lllLDEPt~gLD 509 (566)
|++.+.. .+... . ....++.++++.++|.. ..++++.+|||||||||+||++|+.+ |+||||||||+|||
T Consensus 688 e~l~ltv~e~l~~~~~-~-~~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD 765 (842)
T 2vf7_A 688 DVLALTVDEAHDFFAD-E-SAIFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLH 765 (842)
T ss_dssp HHHTCBHHHHHHHTTT-S-HHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCC
T ss_pred HHHhccHHHHHHHhhc-c-hHHHHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCC
Confidence 5543211 11111 1 12346789999999986 46899999999999999999999996 79999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEE------ECCEEEEecCccccc
Q psy7366 510 PGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIM------VNGQFTCLGSATHLK 565 (566)
Q Consensus 510 ~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l------~~G~i~~~g~~~~l~ 565 (566)
+..+..++++|++++++|.|||+||||++++ .+||||++| ++|+|++.|+++++.
T Consensus 766 ~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 766 PADVERLQRQLVKLVDAGNTVIAVEHKMQVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 9999999999999988899999999999999 689999999 799999999988763
No 13
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=4.1e-55 Score=452.76 Aligned_cols=224 Identities=25% Similarity=0.403 Sum_probs=206.2
Q ss_pred CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc-h---HH
Q psy7366 341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS-M---DL 416 (566)
Q Consensus 341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~---~~ 416 (566)
.+|+++|+++.|+.+.+...+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++... . ..
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 4799999999997433345799999999999999999999999999999999999999999999999998652 2 23
Q ss_pred hcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCC
Q psy7366 417 VRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNP 496 (566)
Q Consensus 417 ~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p 496 (566)
.|++||||||++.+++.+||+||+.++....+.+..+..+++.++++.+||.+..++++.+|||||||||+|||||+.+|
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P 182 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNP 182 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCC
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 46789999999999999999999999887777777777788999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366 497 PLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564 (566)
Q Consensus 497 ~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l 564 (566)
++|||||||+|||+.++..++++|++++++ |.|||+||||++++..+||||++|++|++++.|+++++
T Consensus 183 ~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev 251 (366)
T 3tui_C 183 KVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251 (366)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHH
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999765 99999999999999999999999999999999998875
No 14
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=2.1e-54 Score=447.32 Aligned_cols=219 Identities=26% Similarity=0.394 Sum_probs=201.0
Q ss_pred eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC---chHHhc
Q psy7366 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD---SMDLVR 418 (566)
Q Consensus 342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~---~~~~~~ 418 (566)
+|+++|+++.|+ +..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++.. .....+
T Consensus 4 ~l~i~~ls~~y~----~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~ 79 (359)
T 3fvq_A 4 ALHIGHLSKSFQ----NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRE 79 (359)
T ss_dssp CEEEEEEEEEET----TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGG
T ss_pred EEEEEeEEEEEC----CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhh
Confidence 589999999996 5779999999999999999999999999999999999999999999999998721 122345
Q ss_pred CceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCE
Q psy7366 419 SYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPL 498 (566)
Q Consensus 419 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~l 498 (566)
++||||||++.+|+.+||+||+.|+....+.+..+.++++.++++.++|.++.++++.+|||||||||+|||||+.+|++
T Consensus 80 r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~l 159 (359)
T 3fvq_A 80 RRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPEL 159 (359)
T ss_dssp SCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred CCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 68999999999999999999999877655566666678899999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366 499 IFLDEPTSGMDPGARRFLWTCIERAV-SEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564 (566)
Q Consensus 499 llLDEPt~gLD~~~~~~l~~~l~~~~-~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l 564 (566)
|||||||+|||+..+..+++.|.++. +.|.|+|+||||++++..+||||++|++|+++..|+++++
T Consensus 160 LLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el 226 (359)
T 3fvq_A 160 ILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHEL 226 (359)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHH
Confidence 99999999999999999999888765 4599999999999999999999999999999999999876
No 15
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=9.2e-54 Score=427.43 Aligned_cols=219 Identities=22% Similarity=0.338 Sum_probs=199.1
Q ss_pred eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCC---CchHHhc
Q psy7366 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR---DSMDLVR 418 (566)
Q Consensus 342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~---~~~~~~~ 418 (566)
+|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. .....++
T Consensus 24 ~l~i~~l~~~y~----~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 99 (263)
T 2olj_A 24 MIDVHQLKKSFG----SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVR 99 (263)
T ss_dssp SEEEEEEEEEET----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHH
T ss_pred eEEEEeEEEEEC----CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHh
Confidence 699999999996 467999999999999999999999999999999999999999999999999874 1223456
Q ss_pred CceEEEecCCCCCCCCCHHHHHHHHH-HhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCC
Q psy7366 419 SYIGYCPQFDALNDRLTPREHLEFYS-RVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP 497 (566)
Q Consensus 419 ~~i~~v~q~~~l~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~ 497 (566)
+++|||||++.+++.+||+||+.++. ...+.+.....+++.++++.+++.+..++++.+|||||||||+|||||+.+|+
T Consensus 100 ~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~ 179 (263)
T 2olj_A 100 EEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPK 179 (263)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred CcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCC
Confidence 67999999999999999999998854 44444444455678899999999988999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366 498 LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564 (566)
Q Consensus 498 lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l 564 (566)
+|||||||+|||+.++..++++|++++++|+|||++|||++++..+||++++|++|++++.|+++++
T Consensus 180 lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
T 2olj_A 180 IMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDL 246 (263)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999987799999999999999999999999999999999988765
No 16
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=8.2e-54 Score=426.34 Aligned_cols=220 Identities=35% Similarity=0.505 Sum_probs=201.5
Q ss_pred CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCc
Q psy7366 341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSY 420 (566)
Q Consensus 341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 420 (566)
++|+++|+++.|+ ++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.......+++
T Consensus 14 ~~l~i~~l~~~y~----~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~ 89 (256)
T 1vpl_A 14 GAVVVKDLRKRIG----KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKL 89 (256)
T ss_dssp CCEEEEEEEEEET----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTT
T ss_pred CeEEEEEEEEEEC----CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhc
Confidence 5799999999996 567999999999999999999999999999999999999999999999999886544455678
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEE
Q psy7366 421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIF 500 (566)
Q Consensus 421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lll 500 (566)
+||+||++.+++.+||+||+.++....+.+.....+++.++++.+++.+..++++.+|||||||||+|||||+.+|++||
T Consensus 90 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lll 169 (256)
T 1vpl_A 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAI 169 (256)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEE
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999999999999999987655454444445678899999999988999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366 501 LDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564 (566)
Q Consensus 501 LDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l 564 (566)
|||||+|||+.++..++++|++++++|+|||++|||++++..+||++++|++|++++.|+++++
T Consensus 170 LDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 233 (256)
T 1vpl_A 170 LDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEEL 233 (256)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHH
T ss_pred EeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999987799999999999999999999999999999999987765
No 17
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=7e-54 Score=422.28 Aligned_cols=223 Identities=23% Similarity=0.367 Sum_probs=194.1
Q ss_pred eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc-hH----H
Q psy7366 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS-MD----L 416 (566)
Q Consensus 342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~----~ 416 (566)
+|+++|+++.|+......++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... .. .
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 478999999997322224699999999999999999999999999999999999999999999999988642 21 1
Q ss_pred hcCceEEEecCCCCCCCCCHHHHHHHHHHhc---CCCchHHHHHHHHHHHHcCCCCc-cccCcCcCChhHHHHHHHHHHH
Q psy7366 417 VRSYIGYCPQFDALNDRLTPREHLEFYSRVR---NVPSVLLNTIVNESLNKFALGHY-SDREVRTLSGGNKRKLSTAIAL 492 (566)
Q Consensus 417 ~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGqkqrv~la~al 492 (566)
.++++||+||++.+++.+||.||+.++.... ..+.....+++.++++.+++.+. .++++.+|||||||||+|||||
T Consensus 81 ~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral 160 (235)
T 3tif_A 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARAL 160 (235)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred hhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 2456999999999999999999999876543 33444556778899999999875 4999999999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366 493 LGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 565 (566)
Q Consensus 493 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~ 565 (566)
+.+|++|||||||+|||+.++..++++|++++++ |.|||+||||++.+ .+|||+++|++|++++.++++++.
T Consensus 161 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~~~~~~~~~~ 233 (235)
T 3tif_A 161 ANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVEREEKLRGFD 233 (235)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEECC---
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEcChhhhc
Confidence 9999999999999999999999999999999765 99999999999865 789999999999999999888764
No 18
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=3.8e-54 Score=432.66 Aligned_cols=221 Identities=25% Similarity=0.401 Sum_probs=200.4
Q ss_pred CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC---chHHh
Q psy7366 341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD---SMDLV 417 (566)
Q Consensus 341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~---~~~~~ 417 (566)
.+|+++|+++.|+. ...+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. ....+
T Consensus 6 ~~l~i~~ls~~y~~---~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~ 82 (275)
T 3gfo_A 6 YILKVEELNYNYSD---GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKL 82 (275)
T ss_dssp EEEEEEEEEEECTT---SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHH
T ss_pred cEEEEEEEEEEECC---CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHH
Confidence 37999999999962 3459999999999999999999999999999999999999999999999999842 22345
Q ss_pred cCceEEEecCCC-CCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCC
Q psy7366 418 RSYIGYCPQFDA-LNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNP 496 (566)
Q Consensus 418 ~~~i~~v~q~~~-l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p 496 (566)
+++||||||++. .+..+||+||+.++....+.+..+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|
T Consensus 83 ~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P 162 (275)
T 3gfo_A 83 RESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEP 162 (275)
T ss_dssp HHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCC
T ss_pred hCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 678999999973 3447899999999876666666666778999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366 497 PLIFLDEPTSGMDPGARRFLWTCIERAV-SEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564 (566)
Q Consensus 497 ~lllLDEPt~gLD~~~~~~l~~~l~~~~-~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l 564 (566)
++|||||||+|||+.++..++++|++++ ++|+|||+||||++++..+|||+++|++|+++++|+++++
T Consensus 163 ~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~ 231 (275)
T 3gfo_A 163 KVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 231 (275)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999997 5599999999999999999999999999999999998875
No 19
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=6.8e-54 Score=446.45 Aligned_cols=218 Identities=25% Similarity=0.425 Sum_probs=203.9
Q ss_pred eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI 421 (566)
Q Consensus 342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i 421 (566)
.|+++|++|.|+ +..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++..... .++.|
T Consensus 3 ~l~~~~l~~~yg----~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~-~~r~i 77 (381)
T 3rlf_A 3 SVQLQNVTKAWG----EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP-AERGV 77 (381)
T ss_dssp CEEEEEEEEEET----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG-GGSCE
T ss_pred EEEEEeEEEEEC----CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCH-HHCCE
Confidence 489999999996 5779999999999999999999999999999999999999999999999999865322 24679
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEE
Q psy7366 422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFL 501 (566)
Q Consensus 422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllL 501 (566)
|||||++.+|+.+||+||+.|+....+.++.+.++++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||
T Consensus 78 g~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLL 157 (381)
T 3rlf_A 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLL 157 (381)
T ss_dssp EEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999988777777777778899999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366 502 DEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564 (566)
Q Consensus 502 DEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l 564 (566)
||||++||+..+..+++.|+++.++ |.|+|+||||++++..+||||++|++|++++.|+++++
T Consensus 158 DEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l 221 (381)
T 3rlf_A 158 DEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221 (381)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred ECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHH
Confidence 9999999999999999999999766 99999999999999999999999999999999998876
No 20
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1.2e-53 Score=427.29 Aligned_cols=219 Identities=22% Similarity=0.329 Sum_probs=198.5
Q ss_pred eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC---------
Q psy7366 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD--------- 412 (566)
Q Consensus 342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~--------- 412 (566)
+|+++|+++.|+ ++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++..
T Consensus 6 ~l~i~~l~~~y~----~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 81 (262)
T 1b0u_A 6 KLHVIDLHKRYG----GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 81 (262)
T ss_dssp CEEEEEEEEEET----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEE
T ss_pred eEEEeeEEEEEC----CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccc
Confidence 699999999996 4679999999999999999999999999999999999999999999999998751
Q ss_pred --c---hHHhcCceEEEecCCCCCCCCCHHHHHHHHH-HhcCCCchHHHHHHHHHHHHcCCCCc-cccCcCcCChhHHHH
Q psy7366 413 --S---MDLVRSYIGYCPQFDALNDRLTPREHLEFYS-RVRNVPSVLLNTIVNESLNKFALGHY-SDREVRTLSGGNKRK 485 (566)
Q Consensus 413 --~---~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGqkqr 485 (566)
. ....++++|||||++.+++.+||.||+.++. ...+.+.....+++.++++.+++.+. .++++.+||||||||
T Consensus 82 ~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qR 161 (262)
T 1b0u_A 82 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQR 161 (262)
T ss_dssp ESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHH
T ss_pred ccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHH
Confidence 1 1234667999999999999999999998854 33444444455678899999999988 899999999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366 486 LSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564 (566)
Q Consensus 486 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l 564 (566)
|+|||||+.+|++|||||||+|||+.++..++++|++++++|.|||++|||++++..+|||+++|++|++++.|+++++
T Consensus 162 v~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 240 (262)
T 1b0u_A 162 VSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQV 240 (262)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987799999999999999999999999999999999988765
No 21
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=2.9e-53 Score=415.04 Aligned_cols=214 Identities=24% Similarity=0.351 Sum_probs=194.4
Q ss_pred eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc-hH---Hh
Q psy7366 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS-MD---LV 417 (566)
Q Consensus 342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~---~~ 417 (566)
+|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... .. ..
T Consensus 4 ~l~~~~l~~~y~----~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 79 (224)
T 2pcj_A 4 ILRAENIKKVIR----GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLL 79 (224)
T ss_dssp EEEEEEEEEEET----TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHH
T ss_pred EEEEEeEEEEEC----CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHH
Confidence 689999999996 46799999999999999999999999999999999999999999999999988542 11 22
Q ss_pred c-CceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCC
Q psy7366 418 R-SYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNP 496 (566)
Q Consensus 418 ~-~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p 496 (566)
+ ++++|+||++.+++.+||.||+.++....+.+.....+++.++++.+++.+..++++.+|||||||||+|||||+.+|
T Consensus 80 ~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p 159 (224)
T 2pcj_A 80 RNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEP 159 (224)
T ss_dssp HHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCC
T ss_pred HhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCC
Confidence 3 679999999999999999999998765555444445667889999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecC
Q psy7366 497 PLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 560 (566)
Q Consensus 497 ~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~ 560 (566)
++|||||||+|||+.++..++++|++++++|.|||++|||++++ .+||++++|++|+++++|+
T Consensus 160 ~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 160 ILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEee
Confidence 99999999999999999999999999987799999999999987 7999999999999999886
No 22
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=5.1e-53 Score=437.28 Aligned_cols=219 Identities=27% Similarity=0.459 Sum_probs=202.1
Q ss_pred CeEEEeeeEEEe-CCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcC
Q psy7366 341 DVLVVKRLFKIY-ANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRS 419 (566)
Q Consensus 341 ~~l~~~~l~~~y-~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~ 419 (566)
.+|+++|+++.| + ++.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++.... ..++
T Consensus 13 ~~l~~~~l~~~y~g----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-~~~r 87 (355)
T 1z47_A 13 MTIEFVGVEKIYPG----GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLP-PQKR 87 (355)
T ss_dssp EEEEEEEEEECCTT----STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCC-GGGS
T ss_pred ceEEEEEEEEEEcC----CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCC-hhhC
Confidence 479999999999 5 467999999999999999999999999999999999999999999999999886422 2356
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEE
Q psy7366 420 YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLI 499 (566)
Q Consensus 420 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~ll 499 (566)
+||||||++.+|+.+||+||+.|+....+.+....++++.++++.++|.++.++++.+|||||||||+|||||+.+|++|
T Consensus 88 ~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lL 167 (355)
T 1z47_A 88 NVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVL 167 (355)
T ss_dssp SEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 89999999999999999999999876666665556678999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366 500 FLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564 (566)
Q Consensus 500 lLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l 564 (566)
||||||++||+.++..+++.|+++.++ |.|+|+||||++++..+|||+++|++|+++..|+++++
T Consensus 168 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l 233 (355)
T 1z47_A 168 LFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEV 233 (355)
T ss_dssp EEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999765 99999999999999999999999999999999998875
No 23
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=5.4e-53 Score=423.01 Aligned_cols=219 Identities=19% Similarity=0.338 Sum_probs=199.2
Q ss_pred CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcC
Q psy7366 341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRS 419 (566)
Q Consensus 341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~ 419 (566)
.+|+++|+++.|+ ++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. .....++
T Consensus 10 ~~l~~~~l~~~~~----~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~ 85 (266)
T 4g1u_C 10 ALLEASHLHYHVQ----QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALAR 85 (266)
T ss_dssp CEEEEEEEEEEET----TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHH
T ss_pred ceEEEEeEEEEeC----CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhh
Confidence 4799999999996 5789999999999999999999999999999999999999999999999999865 3445566
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcC-----
Q psy7366 420 YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLG----- 494 (566)
Q Consensus 420 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~----- 494 (566)
.++|++|++.+++.+||.||+.++.... ......+++.++++.+++.+..++++.+|||||||||+|||||+.
T Consensus 86 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~ 163 (266)
T 4g1u_C 86 TRAVMRQYSELAFPFSVSEVIQMGRAPY--GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQ 163 (266)
T ss_dssp HEEEECSCCCCCSCCBHHHHHHGGGTTS--CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSS
T ss_pred eEEEEecCCccCCCCCHHHHHHhhhhhc--CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccC
Confidence 7999999998888899999998865433 233445678899999999999999999999999999999999999
Q ss_pred -CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366 495 -NPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 565 (566)
Q Consensus 495 -~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~ 565 (566)
+|++|||||||+|||+.++..++++|++++++ |+|||+||||++++..+|||+++|++|++++.|+++++.
T Consensus 164 ~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 164 PTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp CCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred CCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99999999999999999999999999999765 679999999999999999999999999999999988763
No 24
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=9.2e-53 Score=436.86 Aligned_cols=218 Identities=25% Similarity=0.414 Sum_probs=201.2
Q ss_pred eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI 421 (566)
Q Consensus 342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i 421 (566)
+|+++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++..... .+++|
T Consensus 3 ~l~~~~l~~~y~----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~-~~r~i 77 (362)
T 2it1_A 3 EIKLENIVKKFG----NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPP-KDRNV 77 (362)
T ss_dssp CEEEEEEEEESS----SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG-GGTTE
T ss_pred EEEEEeEEEEEC----CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCH-hHCcE
Confidence 489999999996 4679999999999999999999999999999999999999999999999999864322 24679
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEE
Q psy7366 422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFL 501 (566)
Q Consensus 422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllL 501 (566)
|||||++.+|+.+||+||+.|+....+.+..+..+++.++++.++|.++.++++.+|||||||||+|||||+.+|++|||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLL 157 (362)
T 2it1_A 78 GLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLL 157 (362)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999987665666555667889999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366 502 DEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564 (566)
Q Consensus 502 DEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l 564 (566)
||||++||+..+..+++.|+++.++ |.|+|+||||++++..+|||+++|++|+++..|+++++
T Consensus 158 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~ 221 (362)
T 2it1_A 158 DEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEV 221 (362)
T ss_dssp ESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred ECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999765 99999999999999999999999999999999998876
No 25
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=3e-53 Score=423.43 Aligned_cols=219 Identities=24% Similarity=0.375 Sum_probs=197.4
Q ss_pred CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc--hHHhc
Q psy7366 341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS--MDLVR 418 (566)
Q Consensus 341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~--~~~~~ 418 (566)
.+|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... ....+
T Consensus 6 ~~l~i~~l~~~y~----~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (257)
T 1g6h_A 6 EILRTENIVKYFG----EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH 81 (257)
T ss_dssp EEEEEEEEEEEET----TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred cEEEEeeeEEEEC----CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHh
Confidence 3699999999996 46799999999999999999999999999999999999999999999999988542 23345
Q ss_pred CceEEEecCCCCCCCCCHHHHHHHHHHh--cC-----------CCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHH
Q psy7366 419 SYIGYCPQFDALNDRLTPREHLEFYSRV--RN-----------VPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRK 485 (566)
Q Consensus 419 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~--~~-----------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqr 485 (566)
+++||+||++.+++.+||.||+.++... .+ .......+++.++++.+++.+..++++.+||||||||
T Consensus 82 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQr 161 (257)
T 1g6h_A 82 YGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKL 161 (257)
T ss_dssp HTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHH
T ss_pred CCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHH
Confidence 6799999999999999999999876432 12 2233445678899999999988999999999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccc
Q psy7366 486 LSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATH 563 (566)
Q Consensus 486 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 563 (566)
|+|||||+.+|++|||||||+|||+.++..++++|++++++|+|||++|||++++..+|||+++|++|++++.|++++
T Consensus 162 v~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 162 VEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 999999999999999999999999999999999999998779999999999999999999999999999999998876
No 26
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=9.7e-53 Score=415.58 Aligned_cols=219 Identities=26% Similarity=0.358 Sum_probs=195.7
Q ss_pred CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc-hH-Hhc
Q psy7366 341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS-MD-LVR 418 (566)
Q Consensus 341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~-~~~ 418 (566)
.+++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... .. ..+
T Consensus 5 ~~l~~~~l~~~y~----~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 80 (240)
T 1ji0_A 5 IVLEVQSLHVYYG----AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINR 80 (240)
T ss_dssp EEEEEEEEEEEET----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred ceEEEEeEEEEEC----CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHh
Confidence 3799999999996 46799999999999999999999999999999999999999999999999988542 22 235
Q ss_pred CceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcC-CCCccccCcCcCChhHHHHHHHHHHHcCCCC
Q psy7366 419 SYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFA-LGHYSDREVRTLSGGNKRKLSTAIALLGNPP 497 (566)
Q Consensus 419 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LSgGqkqrv~la~al~~~p~ 497 (566)
+++||+||++.+++.+||.||+.++.. .........+.+.++++.++ +.+..++++.+|||||||||+|||||+.+|+
T Consensus 81 ~~i~~v~q~~~l~~~ltv~enl~~~~~-~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 159 (240)
T 1ji0_A 81 MGIALVPEGRRIFPELTVYENLMMGAY-NRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPK 159 (240)
T ss_dssp TTEEEECSSCCCCTTSBHHHHHHGGGT-TCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCS
T ss_pred CCEEEEecCCccCCCCcHHHHHHHhhh-cCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 669999999999999999999987532 12223344567788999995 9888899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366 498 LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564 (566)
Q Consensus 498 lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l 564 (566)
+|||||||+|||+.++..++++|++++++|+|||++|||++++..+|||+++|++|++++.|+++++
T Consensus 160 lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 226 (240)
T 1ji0_A 160 LLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASEL 226 (240)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHH
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999987899999999999999999999999999999999987765
No 27
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=6.3e-53 Score=437.65 Aligned_cols=218 Identities=29% Similarity=0.442 Sum_probs=198.9
Q ss_pred eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI 421 (566)
Q Consensus 342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i 421 (566)
+|+++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++..... .++++
T Consensus 3 ~l~~~~l~~~y~----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~-~~r~i 77 (359)
T 2yyz_A 3 SIRVVNLKKYFG----KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPP-KYREV 77 (359)
T ss_dssp CEEEEEEEEEET----TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG-GGTTE
T ss_pred EEEEEEEEEEEC----CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCCh-hhCcE
Confidence 489999999996 5679999999999999999999999999999999999999999999999999865322 24679
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEE
Q psy7366 422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFL 501 (566)
Q Consensus 422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllL 501 (566)
|||||++.+|+.+||+||+.|+....+.+..+.++++.++++.++|.++.++++.+|||||||||+|||||+.+|++|||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLL 157 (359)
T 2yyz_A 78 GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLF 157 (359)
T ss_dssp EEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999876544444334456789999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366 502 DEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564 (566)
Q Consensus 502 DEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l 564 (566)
||||++||+..+..+++.|+++.++ |.|+|+||||++++..+|||+++|++|+++..|+++++
T Consensus 158 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l 221 (359)
T 2yyz_A 158 DEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEV 221 (359)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999998765 99999999999999999999999999999999998876
No 28
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.8e-52 Score=437.05 Aligned_cols=219 Identities=26% Similarity=0.436 Sum_probs=201.0
Q ss_pred eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc-----hHH
Q psy7366 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS-----MDL 416 (566)
Q Consensus 342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-----~~~ 416 (566)
+|+++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++... ...
T Consensus 3 ~l~~~~l~~~y~----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~ 78 (372)
T 1g29_1 3 GVRLVDVWKVFG----EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78 (372)
T ss_dssp EEEEEEEEEEET----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG
T ss_pred EEEEEeEEEEEC----CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH
Confidence 589999999996 56799999999999999999999999999999999999999999999999887431 112
Q ss_pred hcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCC
Q psy7366 417 VRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNP 496 (566)
Q Consensus 417 ~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p 496 (566)
.+++||||||++.+|+.+||+||+.|+....+.+..+..+++.++++.++|.++.++++.+|||||||||+|||||+.+|
T Consensus 79 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P 158 (372)
T 1g29_1 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKP 158 (372)
T ss_dssp GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 35679999999999999999999999877666666566678899999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366 497 PLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564 (566)
Q Consensus 497 ~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l 564 (566)
++|||||||++||+.++..+++.|+++.++ |.|+|+||||++++..+|||+++|++|+++..|+++++
T Consensus 159 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l 227 (372)
T 1g29_1 159 QVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227 (372)
T ss_dssp SEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred CEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 999999999999999999999999998765 99999999999999999999999999999999998876
No 29
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=6.7e-53 Score=437.62 Aligned_cols=219 Identities=26% Similarity=0.428 Sum_probs=200.4
Q ss_pred eEEEeeeEEEeCCcCCCcc--eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc----hH
Q psy7366 342 VLVVKRLFKIYANSKGTKP--AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS----MD 415 (566)
Q Consensus 342 ~l~~~~l~~~y~~~~~~~~--~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~----~~ 415 (566)
+|+++|+++.|+ ++. +|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++... ..
T Consensus 3 ~l~i~~l~~~y~----~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~ 78 (353)
T 1oxx_K 3 RIIVKNVSKVFK----KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVP 78 (353)
T ss_dssp CEEEEEEEEEEG----GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSC
T ss_pred EEEEEeEEEEEC----CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCC
Confidence 589999999996 467 99999999999999999999999999999999999999999999999887431 22
Q ss_pred HhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCC
Q psy7366 416 LVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGN 495 (566)
Q Consensus 416 ~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~ 495 (566)
..++++|||||++.+|+.+||+||+.|+....+.+.....+++.++++.++|.+..++++.+|||||||||+|||||+.+
T Consensus 79 ~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~ 158 (353)
T 1oxx_K 79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKD 158 (353)
T ss_dssp GGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred hhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 34578999999999999999999999876655555555567889999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366 496 PPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564 (566)
Q Consensus 496 p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l 564 (566)
|++|||||||++||+..+..+++.|+++.++ |.|+|+||||++++..+|||+++|++|+++..|+++++
T Consensus 159 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l 228 (353)
T 1oxx_K 159 PSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228 (353)
T ss_dssp CSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999765 99999999999999999999999999999999998875
No 30
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.6e-52 Score=436.53 Aligned_cols=218 Identities=25% Similarity=0.388 Sum_probs=193.5
Q ss_pred eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI 421 (566)
Q Consensus 342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i 421 (566)
+|+++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++..... .+++|
T Consensus 11 ~l~~~~l~~~y~----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~-~~r~i 85 (372)
T 1v43_A 11 EVKLENLTKRFG----NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPP-KDRNI 85 (372)
T ss_dssp CEEEEEEEEEET----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG-GGGTE
T ss_pred eEEEEEEEEEEC----CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCCh-hhCcE
Confidence 499999999996 5679999999999999999999999999999999999999999999999998864322 24679
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEE
Q psy7366 422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFL 501 (566)
Q Consensus 422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllL 501 (566)
|||||++.+|+.+||+||+.|+....+.+..+..+++.++++.++|.++.++++.+|||||||||+|||||+.+|++|||
T Consensus 86 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLL 165 (372)
T 1v43_A 86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLM 165 (372)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEE
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999999999876544555555567889999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366 502 DEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564 (566)
Q Consensus 502 DEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l 564 (566)
||||++||+..+..+++.|+++.++ |.|+|+||||++++..+|||+++|++|+++..|+++++
T Consensus 166 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l 229 (372)
T 1v43_A 166 DEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 229 (372)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999765 99999999999999999999999999999999998876
No 31
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=2.5e-52 Score=431.78 Aligned_cols=214 Identities=24% Similarity=0.431 Sum_probs=196.3
Q ss_pred eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI 421 (566)
Q Consensus 342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i 421 (566)
+|+++|+++.|+ ++ +|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++..... .+++|
T Consensus 1 ml~~~~l~~~y~----~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~-~~r~i 74 (348)
T 3d31_A 1 MIEIESLSRKWK----NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP-EKHDI 74 (348)
T ss_dssp CEEEEEEEEECS----SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH-HHHTC
T ss_pred CEEEEEEEEEEC----CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch-hhCcE
Confidence 478999999996 45 9999999999999999999999999999999999999999999999998864222 34679
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEE
Q psy7366 422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFL 501 (566)
Q Consensus 422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllL 501 (566)
|||||++.+|+.+||+||+.|+....+.+.. +++.++++.++|.+..++++.+|||||||||+|||||+.+|++|||
T Consensus 75 g~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~---~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLL 151 (348)
T 3d31_A 75 AFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLL 151 (348)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHHCCCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEE
T ss_pred EEEecCcccCCCCCHHHHHHHHHHHcCCCHH---HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999999999999999997665444332 6688999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366 502 DEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564 (566)
Q Consensus 502 DEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l 564 (566)
||||++||+..+..+++.|+++.++ |.|+|+||||++++..+|||+++|++|+++..|+++++
T Consensus 152 DEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~ 215 (348)
T 3d31_A 152 DEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI 215 (348)
T ss_dssp ESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHH
T ss_pred ECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999998754 99999999999999999999999999999999998876
No 32
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=4.8e-52 Score=409.92 Aligned_cols=213 Identities=27% Similarity=0.403 Sum_probs=191.1
Q ss_pred eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI 421 (566)
Q Consensus 342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i 421 (566)
+++++|+++.|+ + +|+|+||+|++ |+++|+||||||||||+|+|+|+++|++|+|.++|+++... ...++++
T Consensus 1 ml~~~~l~~~y~----~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~i 72 (240)
T 2onk_A 1 MFLKVRAEKRLG----N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPL-PPERRGI 72 (240)
T ss_dssp CCEEEEEEEEET----T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS-CTTTSCC
T ss_pred CEEEEEEEEEeC----C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcC-chhhCcE
Confidence 378999999996 2 59999999999 99999999999999999999999999999999999987542 2235679
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEE
Q psy7366 422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFL 501 (566)
Q Consensus 422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllL 501 (566)
||+||++.+++.+||+||+.++....+ .....+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||
T Consensus 73 ~~v~q~~~l~~~ltv~enl~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllL 150 (240)
T 2onk_A 73 GFVPQDYALFPHLSVYRNIAYGLRNVE--RVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLL 150 (240)
T ss_dssp BCCCSSCCCCTTSCHHHHHHTTCTTSC--HHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEE
T ss_pred EEEcCCCccCCCCcHHHHHHHHHHHcC--CchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999999999987643222 112256788999999999989999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366 502 DEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564 (566)
Q Consensus 502 DEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l 564 (566)
||||+|||+.+++.++++|++++++ |+|||++|||++++..+||++++|++|++++.|+++++
T Consensus 151 DEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 214 (240)
T 2onk_A 151 DEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKEL 214 (240)
T ss_dssp ESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999998764 99999999999999999999999999999999988765
No 33
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.9e-51 Score=412.42 Aligned_cols=218 Identities=26% Similarity=0.414 Sum_probs=193.7
Q ss_pred eEEEeeeEEEeCCcCCC---cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhc
Q psy7366 342 VLVVKRLFKIYANSKGT---KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 418 (566)
Q Consensus 342 ~l~~~~l~~~y~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~ 418 (566)
+++++|+++.|+. ++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... ..+
T Consensus 2 ~l~~~~l~~~y~~--~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~--~~~ 77 (266)
T 2yz2_A 2 RIEVVNVSHIFHR--GTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY--EIR 77 (266)
T ss_dssp CEEEEEEEEEEST--TSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH--HHG
T ss_pred EEEEEEEEEEecC--CCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH--Hhh
Confidence 5899999999951 12 5699999999999999999999999999999999999999999999999987542 456
Q ss_pred CceEEEecCC-CCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCC--CccccCcCcCChhHHHHHHHHHHHcCC
Q psy7366 419 SYIGYCPQFD-ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALG--HYSDREVRTLSGGNKRKLSTAIALLGN 495 (566)
Q Consensus 419 ~~i~~v~q~~-~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGqkqrv~la~al~~~ 495 (566)
+++||+||++ .+++.+||.||+.++.... .+.....+++.++++.+++. +..++++.+|||||||||+|||||+.+
T Consensus 78 ~~i~~v~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~ 156 (266)
T 2yz2_A 78 RNIGIAFQYPEDQFFAERVFDEVAFAVKNF-YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHE 156 (266)
T ss_dssp GGEEEECSSGGGGCCCSSHHHHHHHTTTTT-CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred hhEEEEeccchhhcCCCcHHHHHHHHHHhc-CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcC
Confidence 7899999996 4566789999998864322 22223345688999999999 889999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366 496 PPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564 (566)
Q Consensus 496 p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l 564 (566)
|++|||||||+|||+.++..++++|++++++|.|||++|||++++..+||++++|++|++++.|+++++
T Consensus 157 p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 225 (266)
T 2yz2_A 157 PDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEF 225 (266)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHH
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999977799999999999999999999999999999999987765
No 34
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.1e-51 Score=416.02 Aligned_cols=220 Identities=24% Similarity=0.323 Sum_probs=192.7
Q ss_pred CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCC--C-chHHh
Q psy7366 341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR--D-SMDLV 417 (566)
Q Consensus 341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~--~-~~~~~ 417 (566)
.+|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. . ....+
T Consensus 20 ~~l~~~~l~~~y~----~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~ 95 (279)
T 2ihy_A 20 MLIQLDQIGRMKQ----GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETV 95 (279)
T ss_dssp EEEEEEEEEEEET----TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHH
T ss_pred ceEEEEeEEEEEC----CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHH
Confidence 3699999999996 467999999999999999999999999999999999999999999999999875 3 23445
Q ss_pred cCceEEEecCCCC--CCCCCHHHHHHHHHH----hcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHH
Q psy7366 418 RSYIGYCPQFDAL--NDRLTPREHLEFYSR----VRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIA 491 (566)
Q Consensus 418 ~~~i~~v~q~~~l--~~~~tv~e~l~~~~~----~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~a 491 (566)
+++|||+||++.+ ++.+||+||+.+... ..+.......+++.++++.+++.+..++++.+|||||||||+||||
T Consensus 96 ~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAra 175 (279)
T 2ihy_A 96 RQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARA 175 (279)
T ss_dssp HTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHH
T ss_pred cCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHH
Confidence 6789999999753 345799999987421 1112233445678899999999988999999999999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEE--EEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366 492 LLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV--ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564 (566)
Q Consensus 492 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tv--l~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l 564 (566)
|+.+|++|||||||+|||+.+++.++++|++++++|+|| |++|||++++..+||++++|++|++++.|+++++
T Consensus 176 L~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 176 LMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDI 250 (279)
T ss_dssp HHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHH
T ss_pred HhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999997668999 9999999999999999999999999999988765
No 35
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=2.1e-50 Score=401.23 Aligned_cols=217 Identities=22% Similarity=0.283 Sum_probs=187.0
Q ss_pred eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCC--CCCCccEEEEcCccCCCc-hH-Hh
Q psy7366 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA--IKPTSGNAYVMNHSIRDS-MD-LV 417 (566)
Q Consensus 342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~--~~~~~G~i~~~g~~~~~~-~~-~~ 417 (566)
+++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++... .. ..
T Consensus 3 ~l~~~~l~~~y~----~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~ 78 (250)
T 2d2e_A 3 QLEIRDLWASID----GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERA 78 (250)
T ss_dssp EEEEEEEEEEET----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHH
T ss_pred eEEEEeEEEEEC----CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHH
Confidence 589999999996 46799999999999999999999999999999999999 789999999999988642 22 23
Q ss_pred cCceEEEecCCCCCCCCCHHHHHHHHHH-hcC--CCchHHHHHHHHHHHHcCCC-CccccCcCc-CChhHHHHHHHHHHH
Q psy7366 418 RSYIGYCPQFDALNDRLTPREHLEFYSR-VRN--VPSVLLNTIVNESLNKFALG-HYSDREVRT-LSGGNKRKLSTAIAL 492 (566)
Q Consensus 418 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~-~~~--~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgGqkqrv~la~al 492 (566)
+..++|+||++.+++.+|+.||+.+... ..+ .......+++.++++.+++. +..++++.+ |||||||||+|||||
T Consensus 79 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL 158 (250)
T 2d2e_A 79 RKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLL 158 (250)
T ss_dssp HTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHH
T ss_pred hCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHH
Confidence 4569999999999999999999987542 122 12233346688999999994 788999999 999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhh-CCEEEEEECCEEEEecCcc
Q psy7366 493 LGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEAL-CTKLTIMVNGQFTCLGSAT 562 (566)
Q Consensus 493 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~-~drv~~l~~G~i~~~g~~~ 562 (566)
+.+|++|||||||+|||+.++..++++|++++++|+|||++|||++++..+ |||+++|++|++++.|+++
T Consensus 159 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 159 VLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp HHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHH
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHH
Confidence 999999999999999999999999999999876799999999999999988 5999999999999999876
No 36
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.5e-49 Score=395.43 Aligned_cols=207 Identities=25% Similarity=0.394 Sum_probs=186.6
Q ss_pred eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI 421 (566)
Q Consensus 342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i 421 (566)
+|+++|+++.|+. ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+ ++++
T Consensus 4 ~l~i~~l~~~y~~---~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~------------~~~i 68 (253)
T 2nq2_C 4 ALSVENLGFYYQA---ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV------------YQSI 68 (253)
T ss_dssp EEEEEEEEEEETT---TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE------------CSCE
T ss_pred eEEEeeEEEEeCC---CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE------------eccE
Confidence 6899999999951 357999999999999999999999999999999999999999999982 3469
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHHhc-C---CCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCC
Q psy7366 422 GYCPQFDALNDRLTPREHLEFYSRVR-N---VPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP 497 (566)
Q Consensus 422 ~~v~q~~~l~~~~tv~e~l~~~~~~~-~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~ 497 (566)
+|+||++.+++.+||.||+.++.... + .+.....+++.++++.+++.+..++++.+|||||||||+|||||+.+|+
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 148 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECK 148 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCS
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 99999999888899999998864321 1 1233445678899999999988999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366 498 LIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564 (566)
Q Consensus 498 lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l 564 (566)
+|||||||+|||+.++..++++|++++++ |.|||++|||++++..+||++++|++|+ ++.|+++++
T Consensus 149 lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~ 215 (253)
T 2nq2_C 149 LILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNI 215 (253)
T ss_dssp EEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHH
Confidence 99999999999999999999999999877 9999999999999999999999999999 888887765
No 37
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=7.1e-50 Score=400.99 Aligned_cols=220 Identities=20% Similarity=0.264 Sum_probs=191.2
Q ss_pred CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCC--CCCCccEEEEcCccCCCc-hHH-
Q psy7366 341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA--IKPTSGNAYVMNHSIRDS-MDL- 416 (566)
Q Consensus 341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~--~~~~~G~i~~~g~~~~~~-~~~- 416 (566)
.+|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++... ...
T Consensus 19 ~~l~~~~l~~~y~----~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~ 94 (267)
T 2zu0_C 19 HMLSIKDLHVSVE----DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR 94 (267)
T ss_dssp -CEEEEEEEEEET----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHH
T ss_pred ceEEEEeEEEEEC----CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 3699999999996 56799999999999999999999999999999999999 468999999999987542 222
Q ss_pred hcCceEEEecCCCCCCCCCHHHHHHHHHH-h---cC---CCchHHHHHHHHHHHHcCCC-CccccCcC-cCChhHHHHHH
Q psy7366 417 VRSYIGYCPQFDALNDRLTPREHLEFYSR-V---RN---VPSVLLNTIVNESLNKFALG-HYSDREVR-TLSGGNKRKLS 487 (566)
Q Consensus 417 ~~~~i~~v~q~~~l~~~~tv~e~l~~~~~-~---~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~-~LSgGqkqrv~ 487 (566)
.+..++|+||++.+++.+|+.||+.+... . .+ .+.....+++.++++.+++. ...++++. +|||||||||+
T Consensus 95 ~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~ 174 (267)
T 2zu0_C 95 AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRND 174 (267)
T ss_dssp HHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHH
T ss_pred hhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHH
Confidence 24569999999999999999999976431 1 11 22333456788999999996 57788987 59999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhh-CCEEEEEECCEEEEecCcccc
Q psy7366 488 TAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEAL-CTKLTIMVNGQFTCLGSATHL 564 (566)
Q Consensus 488 la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~-~drv~~l~~G~i~~~g~~~~l 564 (566)
|||||+.+|++|||||||+|||+.++..++++|++++++|+|||++|||++++..+ |||+++|++|++++.|+++++
T Consensus 175 iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 252 (267)
T 2zu0_C 175 ILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 252 (267)
T ss_dssp HHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTTHH
T ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999999999999876699999999999999886 999999999999999998765
No 38
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=7.5e-50 Score=396.21 Aligned_cols=209 Identities=20% Similarity=0.305 Sum_probs=188.9
Q ss_pred eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY 420 (566)
Q Consensus 342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~ 420 (566)
+++++|+++. ++|+|+||+|++||+++|+||||||||||+|+|+|+++|+ |+|.++|+++.. ....++++
T Consensus 4 ~l~~~~l~~~--------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~ 74 (249)
T 2qi9_C 4 VMQLQDVAES--------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALH 74 (249)
T ss_dssp EEEEEEEEET--------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHH
T ss_pred EEEEEceEEE--------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhce
Confidence 6899999873 4899999999999999999999999999999999999999 999999998753 23445677
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCC---
Q psy7366 421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP--- 497 (566)
Q Consensus 421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~--- 497 (566)
++|+||++.+++.+||+||+.++.. .... .+.+.++++.+++.+..++++.+|||||||||+|||||+.+|+
T Consensus 75 i~~v~q~~~~~~~~tv~e~l~~~~~-~~~~----~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~ 149 (249)
T 2qi9_C 75 RAYLSQQQTPPFATPVWHYLTLHQH-DKTR----TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQAN 149 (249)
T ss_dssp EEEECSCCCCCTTCBHHHHHHTTCS-STTC----HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTC
T ss_pred EEEECCCCccCCCCcHHHHHHHhhc-cCCc----HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCC
Confidence 9999999999999999999987521 1111 4567899999999998999999999999999999999999999
Q ss_pred ----EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366 498 ----LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564 (566)
Q Consensus 498 ----lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l 564 (566)
+|||||||+|||+.++..++++|++++++|+|||++|||++++..+||++++|++|++++.|+++++
T Consensus 150 ~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 150 PAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEV 220 (249)
T ss_dssp TTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHH
T ss_pred CCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999977799999999999999999999999999999999988765
No 39
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=5.8e-50 Score=402.31 Aligned_cols=219 Identities=20% Similarity=0.315 Sum_probs=188.1
Q ss_pred CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcC
Q psy7366 341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRS 419 (566)
Q Consensus 341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~ 419 (566)
.+|+++|+++.|+.. +.+++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ....+++
T Consensus 15 ~~l~~~~l~~~y~~~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNH-PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCEEEEEEEECCTTC-TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred ceEEEEEEEEEeCCC-CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 469999999999621 12579999999999999999999999999999999999999999999999998754 2344567
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHhcCCCc-hHH-----HHHHHHHHHHc--CCCCccccCcCcCChhHHHHHHHHHH
Q psy7366 420 YIGYCPQFDALNDRLTPREHLEFYSRVRNVPS-VLL-----NTIVNESLNKF--ALGHYSDREVRTLSGGNKRKLSTAIA 491 (566)
Q Consensus 420 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~-~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~la~a 491 (566)
+|+||||++.+|+ .||+||+.++... ... ... ...+.++++.+ ++....++++.+|||||||||+||||
T Consensus 94 ~i~~v~Q~~~l~~-~tv~enl~~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAra 170 (271)
T 2ixe_A 94 QVAAVGQEPLLFG-RSFRENIAYGLTR--TPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARA 170 (271)
T ss_dssp HEEEECSSCCCCS-SBHHHHHHTTCSS--CCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHH
T ss_pred cEEEEecCCcccc-ccHHHHHhhhccc--CChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHH
Confidence 8999999998887 5999999875321 111 111 12345677777 67778899999999999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366 492 LLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS-EGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564 (566)
Q Consensus 492 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l 564 (566)
|+.+|++|||||||+|||+.++..++++|+++.+ +|+|||+||||++++.. ||++++|++|++++.|+++++
T Consensus 171 L~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i~~~g~~~~l 243 (271)
T 2ixe_A 171 LIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFLKEGSVCEQGTHLQL 243 (271)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEETTEEEEEECHHHH
T ss_pred HhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999865 48999999999999875 999999999999999988765
No 40
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.1e-49 Score=395.05 Aligned_cols=213 Identities=20% Similarity=0.371 Sum_probs=182.7
Q ss_pred CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcC
Q psy7366 341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRS 419 (566)
Q Consensus 341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~ 419 (566)
.-++++|+++.|+. +++.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ....+++
T Consensus 6 ~~~~~~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 83 (247)
T 2ff7_A 6 HDITFRNIRFRYKP--DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRR 83 (247)
T ss_dssp EEEEEEEEEEESST--TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHH
T ss_pred CceeEEEEEEEeCC--CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHh
Confidence 35899999999931 14579999999999999999999999999999999999999999999999998864 3344567
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCc-----------cccCcCcCChhHHHHHHH
Q psy7366 420 YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHY-----------SDREVRTLSGGNKRKLST 488 (566)
Q Consensus 420 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqrv~l 488 (566)
+|||+||++.+|+ .||+||+.++.. ... .+.+.++++.+++.+. .++++.+|||||||||+|
T Consensus 84 ~i~~v~Q~~~l~~-~tv~enl~~~~~--~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~i 156 (247)
T 2ff7_A 84 QVGVVLQDNVLLN-RSIIDNISLANP--GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAI 156 (247)
T ss_dssp HEEEECSSCCCTT-SBHHHHHTTTCT--TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHH
T ss_pred cEEEEeCCCcccc-ccHHHHHhccCC--CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHH
Confidence 8999999998886 599999987521 111 2345566666666433 345678999999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366 489 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564 (566)
Q Consensus 489 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l 564 (566)
||||+.+|++|||||||+|||+.++..++++|+++. +|+|||++|||++++.. ||++++|++|++++.|+++++
T Consensus 157 AraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l 230 (247)
T 2ff7_A 157 ARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKEL 230 (247)
T ss_dssp HHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGGGTT-SSEEEEEETTEEEEEECHHHH
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999984 59999999999998865 999999999999999998776
No 41
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=5.2e-50 Score=388.21 Aligned_cols=204 Identities=22% Similarity=0.328 Sum_probs=180.8
Q ss_pred CCCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhc
Q psy7366 339 SGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 418 (566)
Q Consensus 339 ~~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~ 418 (566)
.+.+|+++|+++.|+ + ++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. ..+
T Consensus 7 ~~~~l~~~~ls~~y~----~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~----~~~ 77 (214)
T 1sgw_A 7 HGSKLEIRDLSVGYD----K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT----KVK 77 (214)
T ss_dssp --CEEEEEEEEEESS----S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG----GGG
T ss_pred CCceEEEEEEEEEeC----C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh----hhc
Confidence 356899999999996 5 7999999999999999999999999999999999999999999999998874 246
Q ss_pred CceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCE
Q psy7366 419 SYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPL 498 (566)
Q Consensus 419 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~l 498 (566)
+.++|+||++.+++.+||.||+.++....+. ... .+++.++++.+++.+. ++++.+|||||||||+|||||+.+|++
T Consensus 78 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~-~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~l 154 (214)
T 1sgw_A 78 GKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KVN-KNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEI 154 (214)
T ss_dssp GGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CCC-HHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSE
T ss_pred CcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-chH-HHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence 7899999999999999999999887554332 222 4567899999999888 999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEE
Q psy7366 499 IFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQF 555 (566)
Q Consensus 499 llLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i 555 (566)
|||||||+|||+.++..++++|++++++|+|||++|||++++..+||+++++ .|+|
T Consensus 155 llLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 155 YVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp EEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 9999999999999999999999998766899999999999999999998754 4544
No 42
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=3.7e-49 Score=401.42 Aligned_cols=212 Identities=23% Similarity=0.348 Sum_probs=183.4
Q ss_pred eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY 420 (566)
Q Consensus 342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~ 420 (566)
.|+++|+++.|+. ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|++
T Consensus 53 ~i~~~~vs~~y~~---~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~ 129 (306)
T 3nh6_A 53 RIEFENVHFSYAD---GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSH 129 (306)
T ss_dssp CEEEEEEEEESST---TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHT
T ss_pred eEEEEEEEEEcCC---CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcc
Confidence 5999999999962 4679999999999999999999999999999999999999999999999999976 44567788
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcC-----------CCCccccCcCcCChhHHHHHHHH
Q psy7366 421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFA-----------LGHYSDREVRTLSGGNKRKLSTA 489 (566)
Q Consensus 421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgGqkqrv~la 489 (566)
||||||++.+|+ .||+||+.++.... .. ..+.++++.++ +....+++..+|||||||||+||
T Consensus 130 i~~v~Q~~~lf~-~Tv~eNi~~~~~~~--~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiA 202 (306)
T 3nh6_A 130 IGVVPQDTVLFN-DTIADNIRYGRVTA--GN----DEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIA 202 (306)
T ss_dssp EEEECSSCCCCS-EEHHHHHHTTSTTC--CH----HHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHH
T ss_pred eEEEecCCccCc-ccHHHHHHhhcccC--CH----HHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHH
Confidence 999999999886 59999998753211 11 22333444443 34445677789999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366 490 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 565 (566)
Q Consensus 490 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~ 565 (566)
|||+.+|+||||||||++||+.+...|++.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+|++.|+++++.
T Consensus 203 RAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv~~G~~~el~ 276 (306)
T 3nh6_A 203 RTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLSTVVN-ADQILVIKDGCIVERGRHEALL 276 (306)
T ss_dssp HHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHHHHHT-CSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChHHHHc-CCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999854 7999999999999987 9999999999999999998763
No 43
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=5.5e-49 Score=392.88 Aligned_cols=211 Identities=23% Similarity=0.330 Sum_probs=186.5
Q ss_pred eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI 421 (566)
Q Consensus 342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i 421 (566)
+++++|+++.|+...+.+++|+++||+|+ |++++|+||||||||||+|+|+|++ |++|+|.++|+++... .. ++++
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~-~~-~~~i 76 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI-RN-YIRY 76 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC-SC-CTTE
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch-HH-hhhe
Confidence 47899999999621001679999999999 9999999999999999999999999 9999999999887533 22 6689
Q ss_pred E-EEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCC-CccccCcCcCChhHHHHHHHHHHHcCCCCEE
Q psy7366 422 G-YCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNPPLI 499 (566)
Q Consensus 422 ~-~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqrv~la~al~~~p~ll 499 (566)
+ |+||++.+ .+|+.||+.++...... ..+++.++++.+++. +..++++.+|||||||||+|||||+.+|++|
T Consensus 77 ~~~v~Q~~~l--~~tv~enl~~~~~~~~~----~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ll 150 (263)
T 2pjz_A 77 STNLPEAYEI--GVTVNDIVYLYEELKGL----DRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIV 150 (263)
T ss_dssp EECCGGGSCT--TSBHHHHHHHHHHHTCC----CHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEE
T ss_pred EEEeCCCCcc--CCcHHHHHHHhhhhcch----HHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 9 99999887 78999999887544321 235678999999999 8899999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCC-EEEEEECCEEEEecCccccc
Q psy7366 500 FLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCT-KLTIMVNGQFTCLGSATHLK 565 (566)
Q Consensus 500 lLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~d-rv~~l~~G~i~~~g~~~~l~ 565 (566)
||||||+|||+.++..+++.|+++++ |||++|||++++..+|| ++++|++|++++.|+++++.
T Consensus 151 lLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 151 GLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELL 214 (263)
T ss_dssp EEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHH
T ss_pred EEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999998753 99999999999999999 99999999999999988763
No 44
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=3e-49 Score=391.44 Aligned_cols=212 Identities=24% Similarity=0.395 Sum_probs=183.4
Q ss_pred eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY 420 (566)
Q Consensus 342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~ 420 (566)
+++++|+++.|+ +++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ....++++
T Consensus 1 ml~~~~l~~~y~---~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T 1mv5_A 1 MLSARHVDFAYD---DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQ 77 (243)
T ss_dssp CEEEEEEEECSS---SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTT
T ss_pred CEEEEEEEEEeC---CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhh
Confidence 478999999994 24679999999999999999999999999999999999999999999999998754 22335678
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccc-----------cCcCcCChhHHHHHHHH
Q psy7366 421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSD-----------REVRTLSGGNKRKLSTA 489 (566)
Q Consensus 421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGqkqrv~la 489 (566)
++|+||++.+|+ .||+||+.++.. .... .+.+.++++.+++.+..+ +++.+|||||||||+||
T Consensus 78 i~~v~q~~~l~~-~tv~enl~~~~~-~~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lA 151 (243)
T 1mv5_A 78 IGFVSQDSAIMA-GTIRENLTYGLE-GDYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIA 151 (243)
T ss_dssp CCEECCSSCCCC-EEHHHHTTSCTT-SCSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHH
T ss_pred EEEEcCCCcccc-ccHHHHHhhhcc-CCCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHH
Confidence 999999998887 499999976421 1111 234677888888866544 45679999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366 490 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564 (566)
Q Consensus 490 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l 564 (566)
|||+.+|++|||||||+|||+.++..+++.|+++. +|+|||++|||++++. .|||+++|++|++++.|+++++
T Consensus 152 ral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~ 224 (243)
T 1mv5_A 152 RAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLSTIV-DADKIYFIEKGQITGSGKHNEL 224 (243)
T ss_dssp HHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHHHH-HCSEEEEEETTEECCCSCHHHH
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChHHHH-hCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999987 6999999999999886 5999999999999999988765
No 45
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1.1e-47 Score=383.52 Aligned_cols=213 Identities=20% Similarity=0.333 Sum_probs=181.0
Q ss_pred CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcC
Q psy7366 341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRS 419 (566)
Q Consensus 341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~ 419 (566)
.+|+++|+++.|+... .+++|+|+||+|++|++++|+||||||||||+|+|+|+++| +|+|.++|.++.. ....+++
T Consensus 16 ~~l~i~~l~~~y~~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~ 93 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQT-NHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRS 93 (260)
T ss_dssp CCEEEEEEEECCTTCC-SSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHT
T ss_pred CeEEEEEEEEEeCCCC-cCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhc
Confidence 3699999999996311 24699999999999999999999999999999999999987 8999999998754 3345677
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCc-----------cccCcCcCChhHHHHHHH
Q psy7366 420 YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHY-----------SDREVRTLSGGNKRKLST 488 (566)
Q Consensus 420 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqrv~l 488 (566)
+|+|+||++.+|+ .||+||+.++.. ... .+.+.++++.+++.+. .++++.+|||||||||+|
T Consensus 94 ~i~~v~Q~~~l~~-~tv~enl~~~~~--~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~l 166 (260)
T 2ghi_A 94 IIGIVPQDTILFN-ETIKYNILYGKL--DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAI 166 (260)
T ss_dssp TEEEECSSCCCCS-EEHHHHHHTTCT--TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHH
T ss_pred cEEEEcCCCcccc-cCHHHHHhccCC--CCC----HHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHH
Confidence 8999999998886 599999987421 111 2335566666665322 346789999999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366 489 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564 (566)
Q Consensus 489 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l 564 (566)
||||+.+|++|||||||+|||+.++..+++.|+++.+ |+|||++|||++++. .||++++|++|++++.|+++++
T Consensus 167 AraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 240 (260)
T 2ghi_A 167 ARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLSTIS-SAESIILLNKGKIVEKGTHKDL 240 (260)
T ss_dssp HHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGGST-TCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHH-hCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999864 899999999999886 5999999999999999998765
No 46
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=9e-47 Score=370.22 Aligned_cols=200 Identities=24% Similarity=0.400 Sum_probs=168.7
Q ss_pred eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI 421 (566)
Q Consensus 342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i 421 (566)
+++++|+++.|+. +++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| ++
T Consensus 6 ~l~~~~l~~~y~~--~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g------------~i 71 (229)
T 2pze_A 6 EVVMENVTAFWEE--GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------RI 71 (229)
T ss_dssp EEEEEEEEECSST--TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS------------CE
T ss_pred eEEEEEEEEEeCC--CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC------------EE
Confidence 6999999999952 246799999999999999999999999999999999999999999999998 49
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCC-----------ccccCcCcCChhHHHHHHHHH
Q psy7366 422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH-----------YSDREVRTLSGGNKRKLSTAI 490 (566)
Q Consensus 422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqrv~la~ 490 (566)
+|+||++.+++. ||+||+.++.. ... ....+.++.+++.+ ..++++.+|||||||||+|||
T Consensus 72 ~~v~q~~~~~~~-tv~enl~~~~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAr 143 (229)
T 2pze_A 72 SFCSQFSWIMPG-TIKENIIFGVS---YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLAR 143 (229)
T ss_dssp EEECSSCCCCSB-CHHHHHHTTSC---CCH----HHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHH
T ss_pred EEEecCCcccCC-CHHHHhhccCC---cCh----HHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHH
Confidence 999999988885 99999987421 111 11233444444422 234456899999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366 491 ALLGNPPLIFLDEPTSGMDPGARRFLWTC-IERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 565 (566)
Q Consensus 491 al~~~p~lllLDEPt~gLD~~~~~~l~~~-l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~ 565 (566)
||+.+|++|||||||+|||+.++..+++. +.++. +|+|||++|||++++. .||++++|++|++++.|+++++.
T Consensus 144 al~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~ 217 (229)
T 2pze_A 144 AVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQ 217 (229)
T ss_dssp HHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHHHH-HCSEEEEEETTEEEEEECHHHHH
T ss_pred HHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChHHHH-hCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999986 45554 4899999999999986 59999999999999999887753
No 47
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.2e-47 Score=400.30 Aligned_cols=211 Identities=23% Similarity=0.343 Sum_probs=186.8
Q ss_pred CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcC
Q psy7366 341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRS 419 (566)
Q Consensus 341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~ 419 (566)
..|+++|+++.|+. ++..+|+|+||+|++||+++|+||||||||||||+|+|+++ ++|+|.++|+++.. ....+++
T Consensus 18 ~~i~~~~l~~~y~~--~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr 94 (390)
T 3gd7_A 18 GQMTVKDLTAKYTE--GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRK 94 (390)
T ss_dssp CCEEEEEEEEESSS--SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHH
T ss_pred CeEEEEEEEEEecC--CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhC
Confidence 46999999999952 25679999999999999999999999999999999999998 89999999999865 3445577
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCc-----------CChhHHHHHHH
Q psy7366 420 YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRT-----------LSGGNKRKLST 488 (566)
Q Consensus 420 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----------LSgGqkqrv~l 488 (566)
.+|||||++.+|+ +||+||+.++. .. ..+++.++++.+++.+..++++.+ |||||||||+|
T Consensus 95 ~ig~v~Q~~~lf~-~tv~enl~~~~---~~----~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRval 166 (390)
T 3gd7_A 95 AFGVIPQKVFIFS-GTFRKNLDPNA---AH----SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCL 166 (390)
T ss_dssp TEEEESCCCCCCS-EEHHHHHCTTC---CS----CHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHH
T ss_pred CEEEEcCCcccCc-cCHHHHhhhcc---cc----CHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHH
Confidence 8999999999887 69999996421 11 134577899999999888999988 99999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366 489 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564 (566)
Q Consensus 489 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l 564 (566)
||||+.+|++|||||||++||+..+..+++.|+++. .+.|+|++|||++.+ ..||||++|++|+|++.|+++++
T Consensus 167 ARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e~~-~~aDri~vl~~G~i~~~g~~~el 240 (390)
T 3gd7_A 167 ARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIEAM-LECDQFLVIEENKVRQYDSILEL 240 (390)
T ss_dssp HHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSGGG-TTCSEEEEEETTEEEEESSHHHH
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHHHH-HhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999998763 489999999998755 56999999999999999999876
No 48
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=2.4e-46 Score=369.02 Aligned_cols=202 Identities=21% Similarity=0.361 Sum_probs=168.9
Q ss_pred eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI 421 (566)
Q Consensus 342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i 421 (566)
+++++|+++.|+. +++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| ++
T Consensus 3 ~l~~~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g------------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWAR--SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG------------SV 68 (237)
T ss_dssp CEEEEEEEEESCT--TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS------------CE
T ss_pred eEEEEEEEEEeCC--CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC------------EE
Confidence 5899999999962 135799999999999999999999999999999999999999999999998 39
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHH---HHHHcCCC-----CccccCcCcCChhHHHHHHHHHHHc
Q psy7366 422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNE---SLNKFALG-----HYSDREVRTLSGGNKRKLSTAIALL 493 (566)
Q Consensus 422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~---~l~~~~l~-----~~~~~~~~~LSgGqkqrv~la~al~ 493 (566)
+|+||++.+ +.+||+||+.++... .... ...+.+ +++.+++. ...++++.+|||||||||+|||||+
T Consensus 69 ~~v~Q~~~~-~~~tv~enl~~~~~~---~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~ 143 (237)
T 2cbz_A 69 AYVPQQAWI-QNDSLRENILFGCQL---EEPY-YRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVY 143 (237)
T ss_dssp EEECSSCCC-CSEEHHHHHHTTSCC---CTTH-HHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHH
T ss_pred EEEcCCCcC-CCcCHHHHhhCcccc---CHHH-HHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHh
Confidence 999999865 478999999875321 1111 111212 22233332 1357889999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366 494 GNPPLIFLDEPTSGMDPGARRFLWTCIE---RAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564 (566)
Q Consensus 494 ~~p~lllLDEPt~gLD~~~~~~l~~~l~---~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l 564 (566)
.+|++|||||||+|||+.++..+++.|. ++. +|+|||++|||++++. .||++++|++|++++.|+++++
T Consensus 144 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~ 215 (237)
T 2cbz_A 144 SNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSYLP-QVDVIIVMSGGKISEMGSYQEL 215 (237)
T ss_dssp HCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTTGG-GSSEEEEEETTEEEEEECHHHH
T ss_pred cCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHHHH-hCCEEEEEeCCEEEEeCCHHHH
Confidence 9999999999999999999999999985 343 4899999999999875 6999999999999999998765
No 49
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.2e-44 Score=402.96 Aligned_cols=216 Identities=25% Similarity=0.373 Sum_probs=184.1
Q ss_pred EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCce
Q psy7366 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSYI 421 (566)
Q Consensus 343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~i 421 (566)
++++|+++.|+... ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ....+++++
T Consensus 342 i~~~~v~~~y~~~~-~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i 420 (595)
T 2yl4_A 342 LEFKNVHFAYPARP-EVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKI 420 (595)
T ss_dssp EEEEEEEEECSSCT-TSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSE
T ss_pred EEEEEEEEEeCCCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhce
Confidence 99999999996311 2469999999999999999999999999999999999999999999999999865 345567789
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCc-----------cccCcCcCChhHHHHHHHHH
Q psy7366 422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHY-----------SDREVRTLSGGNKRKLSTAI 490 (566)
Q Consensus 422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqrv~la~ 490 (566)
+||||++.+|+. |++||+.++.... ....++.+.++++.+++.+. .+.++.+||||||||++|||
T Consensus 421 ~~v~Q~~~l~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAr 496 (595)
T 2yl4_A 421 GTVSQEPILFSC-SIAENIAYGADDP---SSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIAR 496 (595)
T ss_dssp EEECSSCCCCSS-BHHHHHHTTSSST---TTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHH
T ss_pred EEEccCCcccCC-CHHHHHhhcCCCc---cccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHH
Confidence 999999998875 9999998753210 01123456777888776432 23345899999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366 491 ALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 565 (566)
Q Consensus 491 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~ 565 (566)
||+.+|++|||||||++||+.+++.+.+.|+++.+ |+|+|++|||++.+. .||++++|++|++++.|+++++.
T Consensus 497 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 569 (595)
T 2yl4_A 497 ALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLSTIK-NANMVAVLDQGKITEYGKHEELL 569 (595)
T ss_dssp HHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHHHHH-HSSEEEEEETTEEEEEECSCC--
T ss_pred HHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999866 899999999999986 59999999999999999998864
No 50
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=7.6e-45 Score=403.46 Aligned_cols=215 Identities=22% Similarity=0.381 Sum_probs=185.9
Q ss_pred CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcC
Q psy7366 341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRS 419 (566)
Q Consensus 341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~ 419 (566)
..++++|+++.|+.. ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ....+++
T Consensus 340 ~~i~~~~v~~~y~~~--~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~ 417 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGK--EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRR 417 (582)
T ss_pred CeEEEEEEEEEcCCC--CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhc
Confidence 469999999999621 2579999999999999999999999999999999999999999999999999865 3456778
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCcc-----------ccCcCcCChhHHHHHHH
Q psy7366 420 YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYS-----------DREVRTLSGGNKRKLST 488 (566)
Q Consensus 420 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqrv~l 488 (566)
+++||||++.+|+. |++||+.++.. ... .++.+.++++.+++.+.. +.+..+||||||||++|
T Consensus 418 ~i~~v~Q~~~l~~~-tv~eni~~~~~-~~~----~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~i 491 (582)
T 3b5x_A 418 HFALVSQNVHLFND-TIANNIAYAAE-GEY----TREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAI 491 (582)
T ss_pred CeEEEcCCCccccc-cHHHHHhccCC-CCC----CHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHH
Confidence 89999999998875 99999987531 111 134466777777665433 34568999999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366 489 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 565 (566)
Q Consensus 489 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~ 565 (566)
||||+.+|++|||||||++||+.+++.+.+.|+++.+ |+|+|++|||++.+. .||++++|++|++++.|+++++.
T Consensus 492 Aral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 566 (582)
T 3b5x_A 492 ARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLSTIE-QADEILVVDEGEIIERGRHADLL 566 (582)
T ss_pred HHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHHHH-hCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999854 899999999999986 69999999999999999988763
No 51
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.2e-44 Score=402.01 Aligned_cols=214 Identities=20% Similarity=0.352 Sum_probs=185.3
Q ss_pred CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcC
Q psy7366 341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRS 419 (566)
Q Consensus 341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~ 419 (566)
..++++|+++.|+.+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ....+++
T Consensus 340 ~~i~~~~v~~~y~~~--~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~ 417 (582)
T 3b60_A 340 GDLEFRNVTFTYPGR--EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 417 (582)
T ss_dssp CCEEEEEEEECSSSS--SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHH
T ss_pred CcEEEEEEEEEcCCC--CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHh
Confidence 469999999999621 2679999999999999999999999999999999999999999999999999865 3455677
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCC-----------ccccCcCcCChhHHHHHHH
Q psy7366 420 YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH-----------YSDREVRTLSGGNKRKLST 488 (566)
Q Consensus 420 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqrv~l 488 (566)
+++||||++.+|+. |++||+.++.. ...+ ++++.++++.+++.+ ..+++..+||||||||++|
T Consensus 418 ~i~~v~Q~~~l~~~-tv~eni~~~~~-~~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~i 491 (582)
T 3b60_A 418 QVALVSQNVHLFND-TVANNIAYART-EEYS----REQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAI 491 (582)
T ss_dssp TEEEECSSCCCCSS-BHHHHHHTTTT-SCCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHH
T ss_pred hCeEEccCCcCCCC-CHHHHHhccCC-CCCC----HHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHH
Confidence 89999999999875 99999987531 1111 234566777766643 3345668999999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366 489 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564 (566)
Q Consensus 489 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l 564 (566)
||||+.+|++|||||||++||+.+++.+.+.|+++.+ |+|+|++|||++.+. .||++++|++|++++.|+++++
T Consensus 492 Aral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 565 (582)
T 3b60_A 492 ARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLSTIE-QADEIVVVEDGIIVERGTHSEL 565 (582)
T ss_dssp HHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGGTT-TCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHHHH-hCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999865 899999999999886 6999999999999999998876
No 52
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.2e-44 Score=401.58 Aligned_cols=214 Identities=24% Similarity=0.386 Sum_probs=183.7
Q ss_pred CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcC
Q psy7366 341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRS 419 (566)
Q Consensus 341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~ 419 (566)
..++++|+++.|+. +.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+
T Consensus 340 ~~i~~~~v~~~y~~--~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~ 417 (587)
T 3qf4_A 340 GSVSFENVEFRYFE--NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRG 417 (587)
T ss_dssp CCEEEEEEEECSSS--SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHH
T ss_pred CcEEEEEEEEEcCC--CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHh
Confidence 36999999999963 24679999999999999999999999999999999999999999999999999865 4456778
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHc-----------CCCCccccCcCcCChhHHHHHHH
Q psy7366 420 YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKF-----------ALGHYSDREVRTLSGGNKRKLST 488 (566)
Q Consensus 420 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGqkqrv~l 488 (566)
+++||||++.+|+. |++||+.++.. ..... .+.+.++.. |++...++++.+||||||||++|
T Consensus 418 ~i~~v~Q~~~lf~~-tv~eni~~~~~--~~~~~----~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~l 490 (587)
T 3qf4_A 418 HISAVPQETVLFSG-TIKENLKWGRE--DATDD----EIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSI 490 (587)
T ss_dssp HEEEECSSCCCCSE-EHHHHHTTTCS--SCCHH----HHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHH
T ss_pred heEEECCCCcCcCc-cHHHHHhccCC--CCCHH----HHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHH
Confidence 89999999999875 99999976421 11111 222333332 44455678889999999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366 489 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 565 (566)
Q Consensus 489 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~ 565 (566)
||||+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+. .||||++|++|+++++|+++++.
T Consensus 491 ARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~el~ 565 (587)
T 3qf4_A 491 ARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPTAL-LADKILVLHEGKVAGFGTHKELL 565 (587)
T ss_dssp HHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHHHHT-TSSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChHHHH-hCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999874 5899999999999986 79999999999999999998863
No 53
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1.7e-44 Score=400.22 Aligned_cols=214 Identities=23% Similarity=0.391 Sum_probs=183.2
Q ss_pred CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcC
Q psy7366 341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRS 419 (566)
Q Consensus 341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~ 419 (566)
..++++|+++.|+. +.+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+
T Consensus 338 ~~i~~~~v~~~y~~--~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~ 415 (578)
T 4a82_A 338 GRIDIDHVSFQYND--NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRN 415 (578)
T ss_dssp CCEEEEEEEECSCS--SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred CeEEEEEEEEEcCC--CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhh
Confidence 35999999999963 24579999999999999999999999999999999999999999999999999865 4456778
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCC-----------CccccCcCcCChhHHHHHHH
Q psy7366 420 YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALG-----------HYSDREVRTLSGGNKRKLST 488 (566)
Q Consensus 420 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGqkqrv~l 488 (566)
++|||||++.+|+. ||+||+.++.. ... .+.+.+.++..++. ...+.+..+||||||||++|
T Consensus 416 ~i~~v~Q~~~l~~~-tv~eni~~~~~--~~~----~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~l 488 (578)
T 4a82_A 416 QIGLVQQDNILFSD-TVKENILLGRP--TAT----DEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSI 488 (578)
T ss_dssp TEEEECSSCCCCSS-BHHHHHGGGCS--SCC----HHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHH
T ss_pred heEEEeCCCccCcc-cHHHHHhcCCC--CCC----HHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHH
Confidence 89999999999876 99999986521 111 12344555555442 23345667999999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366 489 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 565 (566)
Q Consensus 489 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~ 565 (566)
||||+.+|++|||||||++||+.++..+.+.++++. +++|+|++|||++.+.. |||+++|++|+++++|+++++.
T Consensus 489 Aral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~el~ 563 (578)
T 4a82_A 489 ARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLSTITH-ADKIVVIENGHIVETGTHRELI 563 (578)
T ss_dssp HHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGGTTT-CSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999998874 47999999999999865 9999999999999999998763
No 54
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.4e-44 Score=402.06 Aligned_cols=212 Identities=24% Similarity=0.388 Sum_probs=182.1
Q ss_pred eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY 420 (566)
Q Consensus 342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~ 420 (566)
.++++|+++.|+. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ....+|++
T Consensus 354 ~i~~~~v~~~y~~---~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~ 430 (598)
T 3qf4_B 354 EIEFKNVWFSYDK---KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSS 430 (598)
T ss_dssp CEEEEEEECCSSS---SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHH
T ss_pred eEEEEEEEEECCC---CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhc
Confidence 5999999999963 4679999999999999999999999999999999999999999999999999865 45567888
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCcc-----------ccCcCcCChhHHHHHHHH
Q psy7366 421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYS-----------DREVRTLSGGNKRKLSTA 489 (566)
Q Consensus 421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqrv~la 489 (566)
++||||++.+|+. |++||+.++.. .... +.+.++++..++.+.. .....+||||||||++||
T Consensus 431 i~~v~Q~~~lf~~-tv~eni~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iA 503 (598)
T 3qf4_B 431 IGIVLQDTILFST-TVKENLKYGNP--GATD----EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAIT 503 (598)
T ss_dssp EEEECTTCCCCSS-BHHHHHHSSST--TCCT----THHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHH
T ss_pred eEEEeCCCccccc-cHHHHHhcCCC--CCCH----HHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHH
Confidence 9999999998865 99999986421 1112 2234455555543333 334479999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366 490 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 565 (566)
Q Consensus 490 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~ 565 (566)
|||+.+|++|||||||++||+.+...+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 504 ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 577 (598)
T 3qf4_B 504 RAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNTIKN-ADLIIVLRDGEIVEMGKHDELI 577 (598)
T ss_dssp HHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTHHHH-CSEEEEECSSSEEECSCHHHHH
T ss_pred HHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999985 58999999999999876 9999999999999999998763
No 55
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=6.6e-44 Score=360.91 Aligned_cols=194 Identities=23% Similarity=0.343 Sum_probs=153.3
Q ss_pred eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI 421 (566)
Q Consensus 342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i 421 (566)
.++++|+++.+ +.+|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++| ++
T Consensus 40 ~l~~~~l~~~~------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g------------~i 101 (290)
T 2bbs_A 40 SLSFSNFSLLG------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------RI 101 (290)
T ss_dssp ----------C------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS------------CE
T ss_pred eEEEEEEEEcC------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC------------EE
Confidence 58999999753 4699999999999999999999999999999999999999999999988 49
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCC-----------ccccCcCcCChhHHHHHHHHH
Q psy7366 422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH-----------YSDREVRTLSGGNKRKLSTAI 490 (566)
Q Consensus 422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqrv~la~ 490 (566)
+|+||++.+++. ||+||+. .. .... ....+.++.+++.+ ..++++.+|||||||||+|||
T Consensus 102 ~~v~Q~~~l~~~-tv~enl~-~~---~~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAr 172 (290)
T 2bbs_A 102 SFCSQNSWIMPG-TIKENII-GV---SYDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLAR 172 (290)
T ss_dssp EEECSSCCCCSS-BHHHHHH-TT---CCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHH
T ss_pred EEEeCCCccCcc-cHHHHhh-Cc---ccch----HHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHH
Confidence 999999988875 9999997 32 1111 11233444444432 123456899999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366 491 ALLGNPPLIFLDEPTSGMDPGARRFLWTCI-ERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564 (566)
Q Consensus 491 al~~~p~lllLDEPt~gLD~~~~~~l~~~l-~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l 564 (566)
||+.+|++|||||||+|||+.++..+++.+ +++. +|+|||++|||++++. .||++++|++|++++.|+++++
T Consensus 173 aL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~~~~-~~d~i~~l~~G~i~~~g~~~~l 245 (290)
T 2bbs_A 173 AVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSEL 245 (290)
T ss_dssp HHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHHHH-HSSEEEEEETTEEEEEECHHHH
T ss_pred HHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHHHHH-cCCEEEEEECCeEEEeCCHHHH
Confidence 999999999999999999999999999864 4553 4899999999999886 5999999999999999998765
No 56
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.4e-40 Score=398.32 Aligned_cols=214 Identities=22% Similarity=0.363 Sum_probs=185.1
Q ss_pred eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY 420 (566)
Q Consensus 342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~ 420 (566)
.++++|++++|+..+ ++++|+|+||+|++|+.++|+||+|||||||+++|.|+++|++|+|.++|.++.. ....+|++
T Consensus 415 ~I~~~nvsF~Y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~ 493 (1321)
T 4f4c_A 415 DITVENVHFTYPSRP-DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKN 493 (1321)
T ss_dssp CEEEEEEEECCSSST-TSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred cEEEEEeeeeCCCCC-CCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhc
Confidence 599999999997432 4679999999999999999999999999999999999999999999999999976 56778889
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCC-----------CccccCcCcCChhHHHHHHHH
Q psy7366 421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALG-----------HYSDREVRTLSGGNKRKLSTA 489 (566)
Q Consensus 421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGqkqrv~la 489 (566)
||||+|+|.+|+. |++|||.++.. ... ++.+.++++..++. ........+||||||||++||
T Consensus 494 i~~v~Q~~~Lf~~-TI~eNI~~g~~--~~~----~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiA 566 (1321)
T 4f4c_A 494 VAVVSQEPALFNC-TIEENISLGKE--GIT----REEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIA 566 (1321)
T ss_dssp EEEECSSCCCCSE-EHHHHHHTTCT--TCC----HHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHH
T ss_pred ccccCCcceeeCC-chhHHHhhhcc--cch----HHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHH
Confidence 9999999999876 99999987531 111 23455555555442 223445568999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366 490 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 565 (566)
Q Consensus 490 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~ 565 (566)
||++++|+|||||||||+||+++...+.+.|.++. +|+|+|+|||++..+.. ||+|++|++|+|++.|+.++|.
T Consensus 567 RAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls~i~~-aD~Iivl~~G~ive~Gth~eL~ 640 (1321)
T 4f4c_A 567 RALVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLSTIRN-ADLIISCKNGQVVEVGDHRALM 640 (1321)
T ss_dssp HHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTTTTTT-CSEEEEEETTEEEEEECHHHHH
T ss_pred HHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh-CCCEEEEEcccHHHHHh-CCEEEEeeCCeeeccCCHHHHH
Confidence 99999999999999999999999999999998875 48999999999998864 9999999999999999999874
No 57
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.8e-40 Score=396.66 Aligned_cols=217 Identities=24% Similarity=0.376 Sum_probs=181.9
Q ss_pred eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCc
Q psy7366 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSY 420 (566)
Q Consensus 342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~ 420 (566)
.++++|++++|+.. .+.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|++
T Consensus 387 ~i~~~~v~~~y~~~-~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 465 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSR-KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREI 465 (1284)
T ss_dssp CEEEEEEEECCSST-TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHH
T ss_pred eEEEEEEEEEcCCC-CCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhh
Confidence 59999999999732 13579999999999999999999999999999999999999999999999999865 45667888
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHH-----HHHHHHc--CCCCccccCcCcCChhHHHHHHHHHHHc
Q psy7366 421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIV-----NESLNKF--ALGHYSDREVRTLSGGNKRKLSTAIALL 493 (566)
Q Consensus 421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~la~al~ 493 (566)
||||||++.+|+. ||+||+.++.. .....+..+.+ .+.++.+ |++.....+..+||||||||++|||||+
T Consensus 466 i~~v~Q~~~l~~~-ti~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~ 542 (1284)
T 3g5u_A 466 IGVVSQEPVLFAT-TIAENIRYGRE--DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALV 542 (1284)
T ss_dssp EEEECSSCCCCSS-CHHHHHHHHCS--SCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHH
T ss_pred eEEEcCCCccCCc-cHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHh
Confidence 9999999999876 99999988632 11222211111 1223332 2233345667799999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366 494 GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564 (566)
Q Consensus 494 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l 564 (566)
.+|+||||||||++||+.+...+.+.++++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 543 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~~~g~~~~l 611 (1284)
T 3g5u_A 543 RNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLSTVRN-ADVIAGFDGGVIVEQGNHDEL 611 (1284)
T ss_dssp HCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHHHHTT-CSEEEECSSSCCCCEECHHHH
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999998764 58999999999999976 999999999999999998876
No 58
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=3.6e-39 Score=356.97 Aligned_cols=195 Identities=25% Similarity=0.349 Sum_probs=163.9
Q ss_pred eeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEE---------EEcCccCCCch--
Q psy7366 346 KRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA---------YVMNHSIRDSM-- 414 (566)
Q Consensus 346 ~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i---------~~~g~~~~~~~-- 414 (566)
+|+++.|+. ...+|+++| +|++||++||+||||||||||+|+|+|+++|++|++ .++|.++....
T Consensus 95 ~~ls~~yg~---~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~ 170 (607)
T 3bk7_A 95 EDCVHRYGV---NAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFER 170 (607)
T ss_dssp GSEEEECST---TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHH
T ss_pred CCeEEEECC---CCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhh
Confidence 889999962 225899999 999999999999999999999999999999999995 34555442211
Q ss_pred -HHhcCceEEEecCCCCCC---CCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHH
Q psy7366 415 -DLVRSYIGYCPQFDALND---RLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAI 490 (566)
Q Consensus 415 -~~~~~~i~~v~q~~~l~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~ 490 (566)
...+..+++++|+...++ ..|+.||+... .. .+++.++++.++|.+..++++.+|||||||||+|||
T Consensus 171 ~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~----~~-----~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAr 241 (607)
T 3bk7_A 171 LKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV----DE-----VGKFEEVVKELELENVLDRELHQLSGGELQRVAIAA 241 (607)
T ss_dssp HHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT----CC-----SSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHH
T ss_pred hhhhhcceEEeechhhhchhhccccHHHHhhhh----HH-----HHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHH
Confidence 112356889998743222 23899988531 11 134678999999999999999999999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECC
Q psy7366 491 ALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNG 553 (566)
Q Consensus 491 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G 553 (566)
||+.+|++|||||||+|||+.++..++++|++++++|.|||+||||++++..+|||+++|+++
T Consensus 242 aL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 242 ALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp HHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 999999999999999999999999999999999878999999999999999999999999865
No 59
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=3.3e-39 Score=353.61 Aligned_cols=198 Identities=23% Similarity=0.324 Sum_probs=163.3
Q ss_pred EEE-eeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEE---------EEcCccCCC
Q psy7366 343 LVV-KRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA---------YVMNHSIRD 412 (566)
Q Consensus 343 l~~-~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i---------~~~g~~~~~ 412 (566)
.++ +|+++.|+. ...+++++| +|++||++||+||||||||||+|+|+|+++|++|++ .++|.++..
T Consensus 21 ~~~~~~ls~~yg~---~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~ 96 (538)
T 1yqt_A 21 EQLEEDCVHRYGV---NAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQN 96 (538)
T ss_dssp ---CCCEEEECST---TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHH
T ss_pred hhHhcCcEEEECC---ccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHH
Confidence 344 589999962 225899999 999999999999999999999999999999999995 345544321
Q ss_pred c-hH--HhcCceEEEecCCCCCCC---CCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHH
Q psy7366 413 S-MD--LVRSYIGYCPQFDALNDR---LTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKL 486 (566)
Q Consensus 413 ~-~~--~~~~~i~~v~q~~~l~~~---~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv 486 (566)
. .. ..+..+++++|+..+++. .|+.+++... .. .+++.++++.+++....++++.+|||||||||
T Consensus 97 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~----~~-----~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv 167 (538)
T 1yqt_A 97 YFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKA----DE-----TGKLEEVVKALELENVLEREIQHLSGGELQRV 167 (538)
T ss_dssp HHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHH----CS-----SSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhh----hH-----HHHHHHHHHHcCCChhhhCChhhCCHHHHHHH
Confidence 1 01 123468999997543221 3888887531 11 13467899999999889999999999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECC
Q psy7366 487 STAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNG 553 (566)
Q Consensus 487 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G 553 (566)
+|||||+.+|++|||||||++||+.++..++++|++++++|+|||+||||++++..+|||+++|++|
T Consensus 168 ~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 168 AIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 9999999999999999999999999999999999999888999999999999999999999999864
No 60
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=4e-38 Score=325.75 Aligned_cols=180 Identities=26% Similarity=0.323 Sum_probs=160.8
Q ss_pred CCcchHHHHHhccccCCC---ccCCCCCccc------ccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHH
Q psy7366 1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTID------KNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIV 71 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~~------~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~ 71 (566)
.||||++|+++|++.|++ .+.+.+.... ..+++||||||++.+++.+||+||+.|+....+.+..+..+++
T Consensus 65 aGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v 144 (366)
T 3tui_C 65 AGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 144 (366)
T ss_dssp SSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred chHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 599999999999998765 2333221111 1135799999999999999999999999888888888888999
Q ss_pred HHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEecCCh
Q psy7366 72 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS-EGRCVILTSHNM 150 (566)
Q Consensus 72 ~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviiisH~~ 150 (566)
.++|+.+||.+..++++.+|||||||||+|||||+.+|++|||||||++|||.++..++++|+++++ .|.|||+||||+
T Consensus 145 ~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl 224 (366)
T 3tui_C 145 TELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEM 224 (366)
T ss_dssp HHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCH
T ss_pred HHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 9999999999999999999999999999999999999999999999999999999999999999965 499999999999
Q ss_pred hHHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366 151 EECEALCTKLTIMVNGQFTCLGSATHLKSK 180 (566)
Q Consensus 151 ~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~ 180 (566)
+++..+||||++|++|++++.|+++++...
T Consensus 225 ~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~ 254 (366)
T 3tui_C 225 DVVKRICDCVAVISNGELIEQDTVSEVFSH 254 (366)
T ss_dssp HHHHHHCSEEEEEETTEEEECCBHHHHHSS
T ss_pred HHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999998653
No 61
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=4.6e-38 Score=327.30 Aligned_cols=180 Identities=24% Similarity=0.338 Sum_probs=161.9
Q ss_pred CCcchHHHHHhccccCCC---ccCCCCCcc-cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy7366 1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI-DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLN 76 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~-~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~ 76 (566)
+||||++|+|+|++.|++ .+.+..... ....+.||||||++.+|+.+||+||+.|+....+.+..+.++++.++++
T Consensus 40 sGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~ 119 (381)
T 3rlf_A 40 CGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAE 119 (381)
T ss_dssp SSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 599999999999998765 233322111 1223579999999999999999999999988888888888999999999
Q ss_pred HcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCChhHHHh
Q psy7366 77 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEA 155 (566)
Q Consensus 77 ~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~~~~~~~ 155 (566)
.+||+...++++.+|||||||||+|||||+.+|+||||||||++||+..+.++++.|++++++ |.|+|+||||++++..
T Consensus 120 ~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~ 199 (381)
T 3rlf_A 120 VLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMT 199 (381)
T ss_dssp HTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHH
T ss_pred HcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999655 9999999999999999
Q ss_pred hcCEEEEEeCCEEEEecChhHHHhh
Q psy7366 156 LCTKLTIMVNGQFTCLGSATHLKSK 180 (566)
Q Consensus 156 ~~d~i~vl~~G~i~~~g~~~~~~~~ 180 (566)
+||||++|++|+++..|+++++...
T Consensus 200 ~aDri~vl~~G~i~~~g~~~~l~~~ 224 (381)
T 3rlf_A 200 LADKIVVLDAGRVAQVGKPLELYHY 224 (381)
T ss_dssp HCSEEEEEETTEEEEEECHHHHHHC
T ss_pred hCCEEEEEECCEEEEEeCHHHHHhC
Confidence 9999999999999999999998754
No 62
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.1e-37 Score=322.43 Aligned_cols=180 Identities=22% Similarity=0.288 Sum_probs=159.4
Q ss_pred CCcchHHHHHhccccCCC---ccCCCCC-----cccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHH
Q psy7366 1 MGLTTTPKRVVTLLLTTQ---KVPGSNP-----TIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVN 72 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~---~~~~~~~-----~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~ 72 (566)
+||||++|+|+|++.|++ .+.+... ......+.||||||++.+|+.+||+||+.|+....+.+..+..++++
T Consensus 41 sGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~ 120 (359)
T 3fvq_A 41 CGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIE 120 (359)
T ss_dssp SSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHH
T ss_pred chHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHH
Confidence 599999999999998765 2333221 11123457999999999999999999999987766777778888999
Q ss_pred HHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEecCChh
Q psy7366 73 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERA-VSEGRCVILTSHNME 151 (566)
Q Consensus 73 ~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l-~~~g~tviiisH~~~ 151 (566)
++++.+||+...++++.+|||||||||+|||||+.+|++|||||||++||+..+.++++.|+++ ++.|.|||+||||++
T Consensus 121 ~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ 200 (359)
T 3fvq_A 121 AMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE 200 (359)
T ss_dssp HHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred HHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999988776 456999999999999
Q ss_pred HHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366 152 ECEALCTKLTIMVNGQFTCLGSATHLKSK 180 (566)
Q Consensus 152 ~~~~~~d~i~vl~~G~i~~~g~~~~~~~~ 180 (566)
++..+||||++|++|+++..|+++++...
T Consensus 201 ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 201 EALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp HHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 99999999999999999999999998754
No 63
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=2.8e-37 Score=352.85 Aligned_cols=198 Identities=21% Similarity=0.295 Sum_probs=169.4
Q ss_pred CCeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcC
Q psy7366 340 GDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRS 419 (566)
Q Consensus 340 ~~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~ 419 (566)
+..+...|+++.|+ ++.+|+|+||+|++|++++|+||||||||||+|+|+| |+| +|.+... ..
T Consensus 433 ~~~L~~~~ls~~yg----~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~-----~~ 495 (986)
T 2iw3_A 433 GEDLCNCEFSLAYG----AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE-----EC 495 (986)
T ss_dssp SCEEEEEEEEEEET----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT-----TS
T ss_pred cceeEEeeEEEEEC----CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc-----ce
Confidence 34577779999996 5679999999999999999999999999999999995 443 3433211 12
Q ss_pred ceEEEecCC-CCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCC-CccccCcCcCChhHHHHHHHHHHHcCCCC
Q psy7366 420 YIGYCPQFD-ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNPP 497 (566)
Q Consensus 420 ~i~~v~q~~-~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqrv~la~al~~~p~ 497 (566)
+++|++|++ .+++.+|+.||+.+ ...+. .+++.++++.+|+. ...++++.+|||||||||+|||||+.+|+
T Consensus 496 ~~~~v~q~~~~~~~~ltv~e~l~~--~~~~~-----~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~ 568 (986)
T 2iw3_A 496 RTVYVEHDIDGTHSDTSVLDFVFE--SGVGT-----KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNAD 568 (986)
T ss_dssp CEEETTCCCCCCCTTSBHHHHHHT--TCSSC-----HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCS
T ss_pred eEEEEcccccccccCCcHHHHHHH--hhcCH-----HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 478999985 67888999999865 21121 45678999999995 67899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEE-EecCcccc
Q psy7366 498 LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFT-CLGSATHL 564 (566)
Q Consensus 498 lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~-~~g~~~~l 564 (566)
+|||||||+|||+.++..++++|++ .|.|||++|||++++..+||++++|++|+++ +.|+++++
T Consensus 569 lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~ 633 (986)
T 2iw3_A 569 ILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEF 633 (986)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHH
T ss_pred EEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHH
Confidence 9999999999999999999999987 5899999999999999999999999999997 57877654
No 64
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.6e-37 Score=311.73 Aligned_cols=179 Identities=20% Similarity=0.270 Sum_probs=157.1
Q ss_pred CCcchHHHHHhccccCCC---ccCCCCCc--c---cccccceeEEcCCCC-CCCCCCHHHHHHHHHHhcCCChhhHHHHH
Q psy7366 1 MGLTTTPKRVVTLLLTTQ---KVPGSNPT--I---DKNLSYIGYCPQFDA-LNDRLTPREHLEFYSRVRNVPSVLLNTIV 71 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~--~---~~~~~~ig~v~Q~~~-l~~~~tv~e~l~~~~~~~~~~~~~~~~~~ 71 (566)
+||||++|+++|++.|.+ .+.+.+.. . ....+.||||||+|. .+..+||+||+.|+....+.+..+..+++
T Consensus 45 sGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~ 124 (275)
T 3gfo_A 45 VGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRV 124 (275)
T ss_dssp SSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHH
Confidence 599999999999998765 23332221 0 112357999999984 34478999999998887778888888899
Q ss_pred HHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEecCCh
Q psy7366 72 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV-SEGRCVILTSHNM 150 (566)
Q Consensus 72 ~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~-~~g~tviiisH~~ 150 (566)
+++++.+||+...++++.+|||||||||+||+||+.+|++|||||||++||+.++..++++|++++ ++|+|||+||||+
T Consensus 125 ~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl 204 (275)
T 3gfo_A 125 DNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDI 204 (275)
T ss_dssp HHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCC
T ss_pred HHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCH
Confidence 999999999999999999999999999999999999999999999999999999999999999997 5699999999999
Q ss_pred hHHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366 151 EECEALCTKLTIMVNGQFTCLGSATHLKS 179 (566)
Q Consensus 151 ~~~~~~~d~i~vl~~G~i~~~g~~~~~~~ 179 (566)
+++..+||||++|++|+++..|+++++..
T Consensus 205 ~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 205 DIVPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp SSGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred HHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999998754
No 65
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=5e-37 Score=317.64 Aligned_cols=180 Identities=26% Similarity=0.363 Sum_probs=159.5
Q ss_pred CCcchHHHHHhccccCCC---ccCCCCCcc-cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy7366 1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI-DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLN 76 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~-~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~ 76 (566)
+||||++|+|+|++.|++ .+.+..... ....+.||||||++.+|+.+||+||+.|+....+.+..+.++++.++++
T Consensus 52 sGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~ 131 (355)
T 1z47_A 52 SGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLR 131 (355)
T ss_dssp SSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 599999999999998765 233322111 1224579999999999999999999999877777777777889999999
Q ss_pred HcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCChhHHHh
Q psy7366 77 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEA 155 (566)
Q Consensus 77 ~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~~~~~~~ 155 (566)
.+||+...++++.+|||||||||+|||||+.+|++|||||||++||+..++++++.|+++.++ |.|||++|||++++..
T Consensus 132 ~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~ 211 (355)
T 1z47_A 132 FMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALE 211 (355)
T ss_dssp HTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHH
T ss_pred HcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999655 9999999999999999
Q ss_pred hcCEEEEEeCCEEEEecChhHHHhh
Q psy7366 156 LCTKLTIMVNGQFTCLGSATHLKSK 180 (566)
Q Consensus 156 ~~d~i~vl~~G~i~~~g~~~~~~~~ 180 (566)
+||||++|++|+++..|+++++...
T Consensus 212 ~adri~vl~~G~i~~~g~~~~l~~~ 236 (355)
T 1z47_A 212 VADRVLVLHEGNVEQFGTPEEVYEK 236 (355)
T ss_dssp HCSEEEEEETTEEEEEECHHHHHHS
T ss_pred hCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999998653
No 66
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=7.4e-37 Score=305.15 Aligned_cols=179 Identities=22% Similarity=0.275 Sum_probs=155.6
Q ss_pred CCcchHHHHHhccccCCC---ccCCCCCc---c--cccccceeEEcCCCCCCCCCCHHHHHHHHH-HhcCCChhhHHHHH
Q psy7366 1 MGLTTTPKRVVTLLLTTQ---KVPGSNPT---I--DKNLSYIGYCPQFDALNDRLTPREHLEFYS-RVRNVPSVLLNTIV 71 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~---~--~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~-~~~~~~~~~~~~~~ 71 (566)
.||||++|+++|++.|++ .+.+.+.. . ....+.||||||++.+++.+||+||+.++. ...+.+..+..+++
T Consensus 61 sGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~ 140 (263)
T 2olj_A 61 SGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKA 140 (263)
T ss_dssp SSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHH
T ss_pred CcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 599999999999998765 23332211 0 112346999999999999999999999864 44555555667789
Q ss_pred HHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChh
Q psy7366 72 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 151 (566)
Q Consensus 72 ~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~ 151 (566)
.++++.+||....++++.+|||||||||+||+||+.+|++|||||||++||+.++++++++|++++++|+|||++|||++
T Consensus 141 ~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~ 220 (263)
T 2olj_A 141 MELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG 220 (263)
T ss_dssp HHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred HHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH
Confidence 99999999998899999999999999999999999999999999999999999999999999999777999999999999
Q ss_pred HHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366 152 ECEALCTKLTIMVNGQFTCLGSATHLKS 179 (566)
Q Consensus 152 ~~~~~~d~i~vl~~G~i~~~g~~~~~~~ 179 (566)
++..+||||++|++|+++..|+++++..
T Consensus 221 ~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
T 2olj_A 221 FAREVGDRVLFMDGGYIIEEGKPEDLFD 248 (263)
T ss_dssp HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999988754
No 67
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.4e-37 Score=350.68 Aligned_cols=203 Identities=20% Similarity=0.287 Sum_probs=141.6
Q ss_pred CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHH---------------------HHHHCCCCCC-------ccEEEEcCcc
Q psy7366 358 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTF---------------------KMLTGAIKPT-------SGNAYVMNHS 409 (566)
Q Consensus 358 ~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl---------------------~~i~G~~~~~-------~G~i~~~g~~ 409 (566)
...+|+||||+|++||++||+||||||||||+ +++.|+.+|+ .|.|.+++.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 35689999999999999999999999999998 8999999998 4556666654
Q ss_pred CCCchHHhcCceEEEecCC-------------------CCCCCCCHHHHHHHHHHhcCC--CchHHH------HHHHHHH
Q psy7366 410 IRDSMDLVRSYIGYCPQFD-------------------ALNDRLTPREHLEFYSRVRNV--PSVLLN------TIVNESL 462 (566)
Q Consensus 410 ~~~~~~~~~~~i~~v~q~~-------------------~l~~~~tv~e~l~~~~~~~~~--~~~~~~------~~~~~~l 462 (566)
.... .+..++|++|.+ ..++.+|+.||+.++...... ...... .....++
T Consensus 110 ~~~~---~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 186 (670)
T 3ux8_A 110 TSRN---PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFL 186 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHH
T ss_pred hhcc---chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHH
Confidence 4221 123344444432 234678999999774322110 000000 0112458
Q ss_pred HHcCCCCc-cccCcCcCChhHHHHHHHHHHHcCCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHH
Q psy7366 463 NKFALGHY-SDREVRTLSGGNKRKLSTAIALLGNPP--LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEE 539 (566)
Q Consensus 463 ~~~~l~~~-~~~~~~~LSgGqkqrv~la~al~~~p~--lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~ 539 (566)
+.+||.+. .++++.+|||||||||+|||||+.+|+ +|||||||+|||+.++..++++|++++++|.|||+||||+++
T Consensus 187 ~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~ 266 (670)
T 3ux8_A 187 QNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDT 266 (670)
T ss_dssp HHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHH
T ss_pred HHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 88999764 689999999999999999999999998 999999999999999999999999998889999999999998
Q ss_pred HHhhCCEEEEE------ECCEEEEecCcccc
Q psy7366 540 CEALCTKLTIM------VNGQFTCLGSATHL 564 (566)
Q Consensus 540 ~~~~~drv~~l------~~G~i~~~g~~~~l 564 (566)
+. .|||+++| ++|++++.|+++++
T Consensus 267 ~~-~~d~ii~l~~g~~~~~G~i~~~g~~~~~ 296 (670)
T 3ux8_A 267 ML-AADYLIDIGPGAGIHGGEVVAAGTPEEV 296 (670)
T ss_dssp HH-HCSEEEEECSSSGGGCCSEEEEECHHHH
T ss_pred Hh-hCCEEEEecccccccCCEEEEecCHHHH
Confidence 76 59999999 89999999998875
No 68
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=7.4e-37 Score=305.58 Aligned_cols=179 Identities=20% Similarity=0.239 Sum_probs=155.4
Q ss_pred CCcchHHHHHhccccCCC---ccCCCCCcc----------------cccccceeEEcCCCCCCCCCCHHHHHHHHH-Hhc
Q psy7366 1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI----------------DKNLSYIGYCPQFDALNDRLTPREHLEFYS-RVR 60 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~----------------~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~-~~~ 60 (566)
.||||++|+++|++.|.+ .+.+.+... ....+.||||||++.+++.+||+||+.++. ...
T Consensus 43 sGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~ 122 (262)
T 1b0u_A 43 SGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL 122 (262)
T ss_dssp SSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc
Confidence 599999999999998765 233322110 011346999999999999999999999864 444
Q ss_pred CCChhhHHHHHHHHHHHcCCCcc-cccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy7366 61 NVPSVLLNTIVNESLNKFALGHY-SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE 139 (566)
Q Consensus 61 ~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~ 139 (566)
+.+..+..+++.++++.+||... .++++.+|||||||||+||+||+.+|+||||||||++||+.+++.+.++|++++++
T Consensus 123 ~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~ 202 (262)
T 1b0u_A 123 GLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE 202 (262)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC
Confidence 55555567789999999999988 89999999999999999999999999999999999999999999999999999777
Q ss_pred CCEEEEecCChhHHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366 140 GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 179 (566)
Q Consensus 140 g~tviiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~ 179 (566)
|+|||++|||++++..+||||++|++|+++..|+++++..
T Consensus 203 g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 242 (262)
T 1b0u_A 203 GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFG 242 (262)
T ss_dssp TCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999999988754
No 69
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=7.9e-37 Score=317.20 Aligned_cols=180 Identities=22% Similarity=0.302 Sum_probs=159.4
Q ss_pred CCcchHHHHHhccccCCC---ccCCCCCcc-cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy7366 1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI-DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLN 76 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~-~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~ 76 (566)
+||||++|+|+|++.|++ .+.+..... ....+.||||||++.+|+.+||+||+.|+....+.+..+..++++++++
T Consensus 40 sGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~ 119 (362)
T 2it1_A 40 SGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAK 119 (362)
T ss_dssp SSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 599999999999998765 233322111 1223579999999999999999999999877767777777889999999
Q ss_pred HcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCChhHHHh
Q psy7366 77 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEA 155 (566)
Q Consensus 77 ~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~~~~~~~ 155 (566)
.+||++..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|+++.++ |.|+|++|||++++..
T Consensus 120 ~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~ 199 (362)
T 2it1_A 120 MLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALA 199 (362)
T ss_dssp HTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHH
T ss_pred HcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999654 9999999999999999
Q ss_pred hcCEEEEEeCCEEEEecChhHHHhh
Q psy7366 156 LCTKLTIMVNGQFTCLGSATHLKSK 180 (566)
Q Consensus 156 ~~d~i~vl~~G~i~~~g~~~~~~~~ 180 (566)
+||||++|++|+++..|+++++...
T Consensus 200 ~adri~vl~~G~i~~~g~~~~~~~~ 224 (362)
T 2it1_A 200 MADRIAVIREGEILQVGTPDEVYYK 224 (362)
T ss_dssp HCSEEEEEETTEEEEEECHHHHHHS
T ss_pred hCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999998653
No 70
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1e-36 Score=317.99 Aligned_cols=180 Identities=22% Similarity=0.320 Sum_probs=159.7
Q ss_pred CCcchHHHHHhccccCCC---ccCCCCCcc-------cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHH
Q psy7366 1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI-------DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTI 70 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~-------~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~ 70 (566)
+||||++|+|+|++.|++ .+.+..... ....+.||||||++.+|+.+||+||+.|+....+.+..+..++
T Consensus 40 sGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~ 119 (372)
T 1g29_1 40 CGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR 119 (372)
T ss_dssp SSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHH
Confidence 599999999999998765 233322111 1223579999999999999999999999887777777777889
Q ss_pred HHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCC
Q psy7366 71 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHN 149 (566)
Q Consensus 71 ~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~ 149 (566)
++++++.+||+...++++.+|||||||||+|||||+.+|++|||||||++||+..++.+.+.|+++.++ |.|||++|||
T Consensus 120 v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd 199 (372)
T 1g29_1 120 VREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHD 199 (372)
T ss_dssp HHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred HHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCC
Confidence 999999999999999999999999999999999999999999999999999999999999999998654 9999999999
Q ss_pred hhHHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366 150 MEECEALCTKLTIMVNGQFTCLGSATHLKSK 180 (566)
Q Consensus 150 ~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~ 180 (566)
++++..+||||++|++|+++..|+++++...
T Consensus 200 ~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 230 (372)
T 1g29_1 200 QVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230 (372)
T ss_dssp HHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHHhCCEEEEEeCCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999998654
No 71
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=7.5e-37 Score=317.02 Aligned_cols=180 Identities=22% Similarity=0.314 Sum_probs=157.7
Q ss_pred CCcchHHHHHhccccCCC---ccCCCCCcc-cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy7366 1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI-DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLN 76 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~-~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~ 76 (566)
.||||++|+|+|++.|++ .+.+..... ....+.||||||++.+|+.+||+||+.|+....+.+..+.++++.++++
T Consensus 40 sGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~ 119 (359)
T 2yyz_A 40 CGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIAR 119 (359)
T ss_dssp SSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHH
T ss_pred chHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 599999999999998765 233322111 1223579999999999999999999999876555555566778999999
Q ss_pred HcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCChhHHHh
Q psy7366 77 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEA 155 (566)
Q Consensus 77 ~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~~~~~~~ 155 (566)
.+||+...++++.+|||||||||+|||||+.+|++|||||||++||+..++++.+.|+++.++ |.|+|++|||++++..
T Consensus 120 ~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~ 199 (359)
T 2yyz_A 120 KLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMT 199 (359)
T ss_dssp HTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHH
T ss_pred HcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998654 9999999999999999
Q ss_pred hcCEEEEEeCCEEEEecChhHHHhh
Q psy7366 156 LCTKLTIMVNGQFTCLGSATHLKSK 180 (566)
Q Consensus 156 ~~d~i~vl~~G~i~~~g~~~~~~~~ 180 (566)
+||||++|++|+++..|+++++...
T Consensus 200 ~adri~vl~~G~i~~~g~~~~l~~~ 224 (359)
T 2yyz_A 200 MASRIAVFNQGKLVQYGTPDEVYDS 224 (359)
T ss_dssp HCSEEEEEETTEEEEEECHHHHHHS
T ss_pred hCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999998653
No 72
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.5e-36 Score=301.96 Aligned_cols=179 Identities=32% Similarity=0.410 Sum_probs=156.2
Q ss_pred CCcchHHHHHhccccCCC---ccCCCCCcc--cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy7366 1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI--DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 75 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~--~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l 75 (566)
.||||++|+++|++.|.+ .+.+..... ....+.|||+||++.+++.+||+||+.++....+.+..+..+++.+++
T Consensus 52 sGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l 131 (256)
T 1vpl_A 52 AGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERAT 131 (256)
T ss_dssp SSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 599999999999997755 233322111 112356999999999999999999999876655665555667889999
Q ss_pred HHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHh
Q psy7366 76 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEA 155 (566)
Q Consensus 76 ~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~ 155 (566)
+.+||+...++++.+||||||||++||+||+.+|++|||||||++||+.++..++++|++++++|+|||++|||++++..
T Consensus 132 ~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~ 211 (256)
T 1vpl_A 132 EIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEF 211 (256)
T ss_dssp HHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTT
T ss_pred HHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHH
Confidence 99999988999999999999999999999999999999999999999999999999999998789999999999999999
Q ss_pred hcCEEEEEeCCEEEEecChhHHHh
Q psy7366 156 LCTKLTIMVNGQFTCLGSATHLKS 179 (566)
Q Consensus 156 ~~d~i~vl~~G~i~~~g~~~~~~~ 179 (566)
+||||++|++|+++..|+++++..
T Consensus 212 ~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 212 LCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp TCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HCCEEEEEECCEEEEecCHHHHHH
Confidence 999999999999999999888754
No 73
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.7e-36 Score=296.14 Aligned_cols=172 Identities=22% Similarity=0.256 Sum_probs=149.3
Q ss_pred CCcchHHHHHhccccCCC---ccCCCCCcccc-------cccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHH
Q psy7366 1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTIDK-------NLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTI 70 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~~~-------~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~ 70 (566)
.||||++|+++|++.|.+ .+.+....... ..++|||+||++.+++.+||+||+.++....+.+..+..++
T Consensus 41 sGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~ 120 (224)
T 2pcj_A 41 SGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKER 120 (224)
T ss_dssp SCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHH
Confidence 599999999999998765 23332211100 12469999999999999999999998776666655566778
Q ss_pred HHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCCh
Q psy7366 71 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150 (566)
Q Consensus 71 ~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~ 150 (566)
+.++++.+||.+..++++.+|||||||||+||+||+.+|++|||||||++||+.+++.+.++|++++++|+|||++|||+
T Consensus 121 ~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~ 200 (224)
T 2pcj_A 121 GEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHER 200 (224)
T ss_dssp HHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred HHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999977799999999999
Q ss_pred hHHHhhcCEEEEEeCCEEEEecC
Q psy7366 151 EECEALCTKLTIMVNGQFTCLGS 173 (566)
Q Consensus 151 ~~~~~~~d~i~vl~~G~i~~~g~ 173 (566)
+++ .+||+|++|++|+++..|+
T Consensus 201 ~~~-~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 201 ELA-ELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHH-TTSSEEEEEETTEEEEEEE
T ss_pred HHH-HhCCEEEEEECCEEEEEee
Confidence 988 7999999999999998775
No 74
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=9.5e-37 Score=316.35 Aligned_cols=180 Identities=23% Similarity=0.296 Sum_probs=158.7
Q ss_pred CCcchHHHHHhccccCCC---ccCCCCCc------ccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHH
Q psy7366 1 MGLTTTPKRVVTLLLTTQ---KVPGSNPT------IDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIV 71 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~------~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~ 71 (566)
+||||++|+|+|++.|++ .+.+.... .....+.||||||++.+|+.+||+||+.|+...++.+..+..+++
T Consensus 42 sGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v 121 (353)
T 1oxx_K 42 AGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121 (353)
T ss_dssp HHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHH
T ss_pred CcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHH
Confidence 499999999999998765 23332211 112245799999999999999999999998766666767778899
Q ss_pred HHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCCh
Q psy7366 72 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNM 150 (566)
Q Consensus 72 ~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~~ 150 (566)
.++++.+||+...++++.+|||||||||+|||||+.+|++|||||||++||+..+.++++.|+++.++ |.|||++|||+
T Consensus 122 ~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~ 201 (353)
T 1oxx_K 122 EEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP 201 (353)
T ss_dssp HHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCH
T ss_pred HHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999998654 99999999999
Q ss_pred hHHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366 151 EECEALCTKLTIMVNGQFTCLGSATHLKSK 180 (566)
Q Consensus 151 ~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~ 180 (566)
+++..+||||++|++|+++..|+++++...
T Consensus 202 ~~~~~~adri~vl~~G~i~~~g~~~~l~~~ 231 (353)
T 1oxx_K 202 ADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231 (353)
T ss_dssp HHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999998653
No 75
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=2.1e-36 Score=297.63 Aligned_cols=176 Identities=20% Similarity=0.257 Sum_probs=148.1
Q ss_pred CCcchHHHHHhccccCCC---ccCCCCCccc---c----cccceeEEcCCCCCCCCCCHHHHHHHHHHhc---CCChhhH
Q psy7366 1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTID---K----NLSYIGYCPQFDALNDRLTPREHLEFYSRVR---NVPSVLL 67 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~~---~----~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~ 67 (566)
+||||++|+++|++.|.+ .+.+...... . ...+||||||++.+++.+||+||+.++.... ..+..+.
T Consensus 42 sGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 121 (235)
T 3tif_A 42 SGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121 (235)
T ss_dssp SSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHH
T ss_pred CcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHH
Confidence 599999999999998765 2333211111 0 1236999999999999999999999876543 3455666
Q ss_pred HHHHHHHHHHcCCCcc-cccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEE
Q psy7366 68 NTIVNESLNKFALGHY-SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVIL 145 (566)
Q Consensus 68 ~~~~~~~l~~~gl~~~-~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tvii 145 (566)
.+++.++++.+|+... .++++.+|||||||||+||+||+.+|++|||||||++||+.++..+.++|++++++ |+|||+
T Consensus 122 ~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~ 201 (235)
T 3tif_A 122 RKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVV 201 (235)
T ss_dssp HHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEE
T ss_pred HHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 7889999999999875 59999999999999999999999999999999999999999999999999999765 999999
Q ss_pred ecCChhHHHhhcCEEEEEeCCEEEEecChhHH
Q psy7366 146 TSHNMEECEALCTKLTIMVNGQFTCLGSATHL 177 (566)
Q Consensus 146 isH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~ 177 (566)
||||++.+ .+||||++|++|+++..++++++
T Consensus 202 vtHd~~~~-~~~d~i~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 202 VTHDINVA-RFGERIIYLKDGEVEREEKLRGF 232 (235)
T ss_dssp ECSCHHHH-TTSSEEEEEETTEEEEEEECC--
T ss_pred EcCCHHHH-HhCCEEEEEECCEEEEEcChhhh
Confidence 99999854 79999999999999998877654
No 76
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.2e-36 Score=316.98 Aligned_cols=180 Identities=22% Similarity=0.291 Sum_probs=151.7
Q ss_pred CCcchHHHHHhccccCCC---ccCCCCCcc-cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy7366 1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI-DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLN 76 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~-~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~ 76 (566)
.||||++|+|+|++.|++ .+.+..... ....+.||||||++.+|+.+||+||+.|+...++.+..+..++++++++
T Consensus 48 sGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~ 127 (372)
T 1v43_A 48 CGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAE 127 (372)
T ss_dssp SSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 599999999999998765 233322111 1223579999999999999999999999866666666777889999999
Q ss_pred HcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCChhHHHh
Q psy7366 77 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEA 155 (566)
Q Consensus 77 ~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~~~~~~~ 155 (566)
.+||+...++++.+|||||||||+|||||+.+|++|||||||++||+..++++.+.|+++.++ |.|+|++|||++++..
T Consensus 128 ~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~ 207 (372)
T 1v43_A 128 LLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMT 207 (372)
T ss_dssp HTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHH
T ss_pred HcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999665 9999999999999999
Q ss_pred hcCEEEEEeCCEEEEecChhHHHhh
Q psy7366 156 LCTKLTIMVNGQFTCLGSATHLKSK 180 (566)
Q Consensus 156 ~~d~i~vl~~G~i~~~g~~~~~~~~ 180 (566)
+||||++|++|+++..|+++++...
T Consensus 208 ~adri~vl~~G~i~~~g~~~~l~~~ 232 (372)
T 1v43_A 208 MGDRIAVMNRGQLLQIGSPTEVYLR 232 (372)
T ss_dssp HCSEEEEEETTEEEEEECHHHHHHC
T ss_pred hCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999998653
No 77
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=1.2e-36 Score=299.81 Aligned_cols=177 Identities=25% Similarity=0.349 Sum_probs=151.5
Q ss_pred CCcchHHHHHhccccCCC---ccCCCCCcc-cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy7366 1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI-DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLN 76 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~-~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~ 76 (566)
.||||++|+++|++.|.+ .+.+.+... ....++|||+||++.+++.+||+||+.++....+. ....+++.++++
T Consensus 35 sGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~--~~~~~~~~~~l~ 112 (240)
T 2onk_A 35 AGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVER--VERDRRVREMAE 112 (240)
T ss_dssp SSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCH--HHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCC--chHHHHHHHHHH
Confidence 599999999999998765 233322111 12235799999999999999999999886533322 122567899999
Q ss_pred HcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCChhHHHh
Q psy7366 77 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEA 155 (566)
Q Consensus 77 ~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~~~~~~~ 155 (566)
.+|+....++++.+||||||||++||+||+.+|++|||||||++||+.+++.++++|++++++ |+|||++|||++++..
T Consensus 113 ~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~ 192 (240)
T 2onk_A 113 KLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAM 192 (240)
T ss_dssp TTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHH
T ss_pred HcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 999998899999999999999999999999999999999999999999999999999998654 9999999999999999
Q ss_pred hcCEEEEEeCCEEEEecChhHHHh
Q psy7366 156 LCTKLTIMVNGQFTCLGSATHLKS 179 (566)
Q Consensus 156 ~~d~i~vl~~G~i~~~g~~~~~~~ 179 (566)
+||||++|++|+++..|+++++..
T Consensus 193 ~~d~i~~l~~G~i~~~g~~~~~~~ 216 (240)
T 2onk_A 193 LADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp HCSEEEEEETTEEEEEECHHHHHH
T ss_pred hCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999988754
No 78
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=100.00 E-value=8.8e-40 Score=358.66 Aligned_cols=358 Identities=14% Similarity=0.075 Sum_probs=230.2
Q ss_pred CCcchHHHH--HhccccCCC---ccCCCCCcc--cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHH
Q psy7366 1 MGLTTTPKR--VVTLLLTTQ---KVPGSNPTI--DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNE 73 (566)
Q Consensus 1 ~Gktt~~k~--~~~~~~~~~---~~~~~~~~~--~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ 73 (566)
.||||++|+ +.|++.+++ .+.+..... ....+.+||++|++..... +.+ ..... + .+..+
T Consensus 50 sGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~------l~~-~~~~~-~-----~~~~~ 116 (525)
T 1tf7_A 50 TGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGK------LFI-LDASP-D-----PEGQE 116 (525)
T ss_dssp SSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTS------EEE-EECCC-C-----SSCCS
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCc------EEE-EecCc-c-----cchhh
Confidence 599999999 678887565 233332111 1123568999998653211 100 00000 0 00112
Q ss_pred HHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCC-----CCHHHHHHHHHHHHHHHhCCCEEEEecC
Q psy7366 74 SLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSG-----MDPGARRFLWTCIERAVSEGRCVILTSH 148 (566)
Q Consensus 74 ~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~-----LD~~~~~~l~~~l~~l~~~g~tviiisH 148 (566)
+++.++++...++.+.+||+|| |++++|||||+. ||+..++.++++++.+++.|+|||++||
T Consensus 117 ~l~~~~l~~~~~~~~~~LS~g~-------------~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH 183 (525)
T 1tf7_A 117 VVGGFDLSALIERINYAIQKYR-------------ARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTE 183 (525)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHT-------------CSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred hhcccCHHHHHHHHHHHHHHcC-------------CCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence 3344455555566777777764 789999999984 6999999999999999888999999999
Q ss_pred ChhHH---------HhhcCEEEEEeCCEEEEecChhHHHhhccCccccCCCCCCCCccchhHHHhhccCCCCccccCCCc
Q psy7366 149 NMEEC---------EALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRALNDGSGSGIRNSARP 219 (566)
Q Consensus 149 ~~~~~---------~~~~d~i~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (566)
+++++ ..+||+|++|++|++ .|....... ..+..+... ..
T Consensus 184 ~~~~~~~~~~~~i~~~laD~vi~L~~~~~--~G~~~r~l~---~~k~r~~~~--------------------------~~ 232 (525)
T 1tf7_A 184 RIEEYGPIARYGVEEFVSDNVVILRNVLE--GERRRRTLE---ILKLRGTSH--------------------------MK 232 (525)
T ss_dssp CSSSSSCSSTTSCHHHHCSEEEEEEEECS--TTCCEEEEE---EEEETTSCC--------------------------CC
T ss_pred CCCCccccccccceeeeeeEEEEEEEEcc--CCceeEEEE---EEECCCCCC--------------------------CC
Confidence 99984 566999999999653 121110000 000000000 00
Q ss_pred ccccccccccCCccchhhhhhhHHHHHHHHHHHHhhhhheeeccCCeeeeeeccchhhchHHHHHHHHHHHHHHHHHHHH
Q psy7366 220 EVSGFYNENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHGALYSAINLS 299 (566)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (566)
....+. +. ..+..
T Consensus 233 ~~~~~~----------------------------------i~-~~gi~-------------------------------- 245 (525)
T 1tf7_A 233 GEYPFT----------------------------------IT-DHGIN-------------------------------- 245 (525)
T ss_dssp SEEEEE----------------------------------EE-TTEEE--------------------------------
T ss_pred ceEEEE----------------------------------Ec-CCCEE--------------------------------
Confidence 000000 00 00000
Q ss_pred HHHHHHhhhhcccccCCCCCCCcchhHHHHHHhhhcCCCCCCeEEEeeeEEEeCCcCCCcceeeee-eEEEeCCcEEEEE
Q psy7366 300 IEYKVFSRCFTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQI-SFGVGRGECFGLL 378 (566)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~~~~l~~i-sl~i~~Ge~~~l~ 378 (566)
. .+ . .. ......+.+++++..|+ -|+.+ +..|++|++++|+
T Consensus 246 --------------v--~p-~-~~-------------~~~~~~~~~~~l~~g~~-------~ld~vL~g~i~~G~i~~i~ 287 (525)
T 1tf7_A 246 --------------I--FP-L-GA-------------MRLTQRSSNVRVSSGVV-------RLDEMCGGGFFKDSIILAT 287 (525)
T ss_dssp --------------E--CC-T-TT-------------CCSCCCCCCCEECCSCH-------HHHHHTTSSEESSCEEEEE
T ss_pred --------------E--Ee-c-cc-------------cccccccccceeecChH-------HHHHHhCCCCCCCcEEEEE
Confidence 0 00 0 00 00011245566654332 13322 4589999999999
Q ss_pred cCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHH
Q psy7366 379 GLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIV 458 (566)
Q Consensus 379 G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~ 458 (566)
||||||||||+++++|..+|. |+ . .+.|++|++. ..+.++.. ..+.. +
T Consensus 288 G~~GsGKSTLl~~l~g~~~~~-G~------~----------vi~~~~ee~~----~~l~~~~~----~~g~~-------~ 335 (525)
T 1tf7_A 288 GATGTGKTLLVSRFVENACAN-KE------R----------AILFAYEESR----AQLLRNAY----SWGMD-------F 335 (525)
T ss_dssp ECTTSSHHHHHHHHHHHHHTT-TC------C----------EEEEESSSCH----HHHHHHHH----TTSCC-------H
T ss_pred eCCCCCHHHHHHHHHHHHHhC-CC------C----------EEEEEEeCCH----HHHHHHHH----HcCCC-------H
Confidence 999999999999999998874 53 0 1445566531 12222221 11222 1
Q ss_pred HHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH-----HHHHHHHHHHHHHhCCcEEEEE
Q psy7366 459 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG-----ARRFLWTCIERAVSEGRCVILT 533 (566)
Q Consensus 459 ~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~-----~~~~l~~~l~~~~~~g~tvl~v 533 (566)
.+ +..+++....+.++.+|||||+||+++|+++..+|++||+| ||++||+. .+..++++++.+++.|.|||++
T Consensus 336 ~~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilv 413 (525)
T 1tf7_A 336 EE-MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFT 413 (525)
T ss_dssp HH-HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HH-HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 12 23456666678889999999999999999999999999999 99999999 9999999999998889999999
Q ss_pred ccCH----------HHHHhhCCEEEEEECCE
Q psy7366 534 SHNM----------EECEALCTKLTIMVNGQ 554 (566)
Q Consensus 534 sHd~----------~~~~~~~drv~~l~~G~ 554 (566)
||+. +++..+||++++|++|+
T Consensus 414 sh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 414 NTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp EECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred ECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 9999 78888999999999886
No 79
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=2e-36 Score=301.84 Aligned_cols=176 Identities=21% Similarity=0.247 Sum_probs=151.4
Q ss_pred CCcchHHHHHhccccCCC---ccCCCCCcc----cccccceeEEcCCCCCCCCCCHHHHHHHHHHh--cC----------
Q psy7366 1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI----DKNLSYIGYCPQFDALNDRLTPREHLEFYSRV--RN---------- 61 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~----~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~--~~---------- 61 (566)
.||||++|+++|++.|.+ .+.+..... .....+||||||++.+++.+||.||+.++... .+
T Consensus 44 sGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ 123 (257)
T 1g6h_A 44 SGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKW 123 (257)
T ss_dssp SSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSS
T ss_pred CCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccc
Confidence 599999999999998755 233322111 11134699999999999999999999886543 22
Q ss_pred -CChhhHHHHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCC
Q psy7366 62 -VPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEG 140 (566)
Q Consensus 62 -~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g 140 (566)
.+..+..+++.++++.+||+...++++.+|||||||||+||+||+.+|++|||||||++||+.+++.+.++|++++++|
T Consensus 124 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g 203 (257)
T 1g6h_A 124 IPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKG 203 (257)
T ss_dssp CCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCC
Confidence 2334456788999999999988999999999999999999999999999999999999999999999999999997779
Q ss_pred CEEEEecCChhHHHhhcCEEEEEeCCEEEEecChhH
Q psy7366 141 RCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATH 176 (566)
Q Consensus 141 ~tviiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~ 176 (566)
+|||++|||++++..+||||++|++|+++..|++++
T Consensus 204 ~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 204 ITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp CEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred CEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 999999999999999999999999999999998887
No 80
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=3.8e-36 Score=310.78 Aligned_cols=176 Identities=21% Similarity=0.349 Sum_probs=153.9
Q ss_pred CCcchHHHHHhccccCCC---ccCCCCCcc-cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy7366 1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI-DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLN 76 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~-~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~ 76 (566)
+||||++|+|+|++.|++ .+.+..... ....+.||||||++.+|+.+||+||+.|+...++.+.. +++.++++
T Consensus 37 sGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~---~~v~~~l~ 113 (348)
T 3d31_A 37 AGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP---KRVLDTAR 113 (348)
T ss_dssp HHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCH---HHHHHHHH
T ss_pred ccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHH---HHHHHHHH
Confidence 499999999999998765 233322111 11235699999999999999999999998766554433 78899999
Q ss_pred HcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEecCChhHHHh
Q psy7366 77 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS-EGRCVILTSHNMEECEA 155 (566)
Q Consensus 77 ~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviiisH~~~~~~~ 155 (566)
.+||+...++++.+|||||||||+|||||+.+|++|||||||++||+..++.+++.|+++.+ .|.|||++|||++++..
T Consensus 114 ~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~ 193 (348)
T 3d31_A 114 DLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARI 193 (348)
T ss_dssp HTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred HcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999965 59999999999999999
Q ss_pred hcCEEEEEeCCEEEEecChhHHHh
Q psy7366 156 LCTKLTIMVNGQFTCLGSATHLKS 179 (566)
Q Consensus 156 ~~d~i~vl~~G~i~~~g~~~~~~~ 179 (566)
+||||++|++|+++..|+++++..
T Consensus 194 ~adri~vl~~G~i~~~g~~~~~~~ 217 (348)
T 3d31_A 194 MADRIAVVMDGKLIQVGKPEEIFE 217 (348)
T ss_dssp HCSEEEEESSSCEEEEECHHHHHS
T ss_pred hCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999998864
No 81
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=6.8e-36 Score=294.95 Aligned_cols=177 Identities=23% Similarity=0.264 Sum_probs=151.0
Q ss_pred CCcchHHHHHhccccCCC---ccCCCCCccc----ccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHH
Q psy7366 1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTID----KNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNE 73 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~~----~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ 73 (566)
.||||++|+++|++.|.+ .+.+...... ..+.+|||+||++.+++.+||+||+.++.. ...+..+..+++++
T Consensus 43 sGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~-~~~~~~~~~~~~~~ 121 (240)
T 1ji0_A 43 AGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAY-NRKDKEGIKRDLEW 121 (240)
T ss_dssp SSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGT-TCCCSSHHHHHHHH
T ss_pred CCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhh-cCCCHHHHHHHHHH
Confidence 599999999999997765 2333221111 112459999999999999999999988642 22334456678889
Q ss_pred HHHHcC-CCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhH
Q psy7366 74 SLNKFA-LGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEE 152 (566)
Q Consensus 74 ~l~~~g-l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~ 152 (566)
+++.++ +....++++.+||||||||++||+||+.+|++|||||||++||+.+++.++++|++++++|+|||++|||+++
T Consensus 122 ~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~ 201 (240)
T 1ji0_A 122 IFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALG 201 (240)
T ss_dssp HHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHH
T ss_pred HHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence 999995 9888899999999999999999999999999999999999999999999999999997789999999999999
Q ss_pred HHhhcCEEEEEeCCEEEEecChhHHH
Q psy7366 153 CEALCTKLTIMVNGQFTCLGSATHLK 178 (566)
Q Consensus 153 ~~~~~d~i~vl~~G~i~~~g~~~~~~ 178 (566)
+..+||||++|++|+++..|+++++.
T Consensus 202 ~~~~~d~v~~l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 202 ALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp HHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99999999999999999999988764
No 82
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.9e-35 Score=295.68 Aligned_cols=176 Identities=16% Similarity=0.237 Sum_probs=152.0
Q ss_pred CCcchHHHHHhccccCCC---ccCCCCCcc---cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy7366 1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI---DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNES 74 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~---~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~ 74 (566)
.||||++|+++|++.|++ .+.+..... ....+.+||++|++.+++.+||+||+.++.... ...+..++++++
T Consensus 48 sGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~ 125 (266)
T 4g1u_C 48 AGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY--GGSQDRQALQQV 125 (266)
T ss_dssp SCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS--CSTTHHHHHHHH
T ss_pred CcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc--CcHHHHHHHHHH
Confidence 599999999999998765 233322111 122346999999999988899999999875433 334566789999
Q ss_pred HHHcCCCcccccccccCChhHHHHHHHHHHHhC------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEec
Q psy7366 75 LNKFALGHYSDREVRTLSGGNKRKLSTAIALLG------NPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTS 147 (566)
Q Consensus 75 l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~------~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiis 147 (566)
++.+|+....++++.+|||||||||+||+||+. +|++|||||||++||+.++..+.++|++++++ |+|||+||
T Consensus 126 l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vt 205 (266)
T 4g1u_C 126 MAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVL 205 (266)
T ss_dssp HHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEEC
T ss_pred HHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 999999999999999999999999999999999 99999999999999999999999999999765 57999999
Q ss_pred CChhHHHhhcCEEEEEeCCEEEEecChhHHH
Q psy7366 148 HNMEECEALCTKLTIMVNGQFTCLGSATHLK 178 (566)
Q Consensus 148 H~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~ 178 (566)
||++++..+||||++|++|++++.|+++++.
T Consensus 206 Hdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 206 HDLNLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp SCHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred cCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 9999999999999999999999999998874
No 83
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.5e-36 Score=329.38 Aligned_cols=197 Identities=20% Similarity=0.290 Sum_probs=153.1
Q ss_pred eeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEE-----------EcCccCCCc-h
Q psy7366 347 RLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY-----------VMNHSIRDS-M 414 (566)
Q Consensus 347 ~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~-----------~~g~~~~~~-~ 414 (566)
|++++|+. +...+++++ .+++||++||+||||||||||||+|+|+++|++|+|. +.|..+... .
T Consensus 82 ~~~~~Y~~---~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~ 157 (608)
T 3j16_B 82 HVTHRYSA---NSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFT 157 (608)
T ss_dssp TEEEECST---TSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHH
T ss_pred CeEEEECC---CceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhh
Confidence 45777762 345677777 6899999999999999999999999999999999982 333222110 0
Q ss_pred HHhcCc--eEEEecCCCC------CCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHH
Q psy7366 415 DLVRSY--IGYCPQFDAL------NDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKL 486 (566)
Q Consensus 415 ~~~~~~--i~~v~q~~~l------~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv 486 (566)
...... ..+.+|.... .+..++.+++... . ....+++.++++.+++....++++.+|||||||||
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~----~---~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv 230 (608)
T 3j16_B 158 KMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLR----M---EKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRF 230 (608)
T ss_dssp HHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHH----C---CSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHH
T ss_pred HHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhh----h---hhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHH
Confidence 111122 2334443211 1123455544321 1 11235678999999999999999999999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCE
Q psy7366 487 STAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554 (566)
Q Consensus 487 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~ 554 (566)
+|||||+.+|++|||||||++||+.++..+.++|++++++|.|||+||||++++..+|||+++|++|.
T Consensus 231 ~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~ 298 (608)
T 3j16_B 231 AIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP 298 (608)
T ss_dssp HHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred HHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 99999999999999999999999999999999999998889999999999999999999999998764
No 84
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.7e-35 Score=296.40 Aligned_cols=179 Identities=23% Similarity=0.291 Sum_probs=152.1
Q ss_pred CCcchHHHHHhccccCCC---ccCCCCCcccccccceeEEcCCC-CCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy7366 1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTIDKNLSYIGYCPQFD-ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLN 76 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~~~~~~~ig~v~Q~~-~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~ 76 (566)
.||||++|+++|++.|.+ .+.+.........+.||||||+| .+++.+||+||+.++.... .+..+..+++.++++
T Consensus 44 sGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~l~ 122 (266)
T 2yz2_A 44 SGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF-YPDRDPVPLVKKAME 122 (266)
T ss_dssp SSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT-CTTSCSHHHHHHHHH
T ss_pred CcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Confidence 599999999999997655 23332211112235699999996 4666799999999865433 333445678899999
Q ss_pred HcCCC--cccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHH
Q psy7366 77 KFALG--HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECE 154 (566)
Q Consensus 77 ~~gl~--~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~ 154 (566)
.+||. ...++++.+|||||||||+||+||+.+|++|||||||++||+.+++.++++|++++++|+|||++|||++++.
T Consensus 123 ~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~ 202 (266)
T 2yz2_A 123 FVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVI 202 (266)
T ss_dssp HTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTG
T ss_pred HcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 99999 8889999999999999999999999999999999999999999999999999999767999999999999999
Q ss_pred hhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366 155 ALCTKLTIMVNGQFTCLGSATHLKSK 180 (566)
Q Consensus 155 ~~~d~i~vl~~G~i~~~g~~~~~~~~ 180 (566)
.+||||++|++|+++..|+++++...
T Consensus 203 ~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 203 NHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp GGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999887654
No 85
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=8.8e-35 Score=288.95 Aligned_cols=170 Identities=22% Similarity=0.300 Sum_probs=148.0
Q ss_pred CCcchHHHHHhccccCCCccCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHhc-C---CChhhHHHHHHHHHH
Q psy7366 1 MGLTTTPKRVVTLLLTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVR-N---VPSVLLNTIVNESLN 76 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~-~---~~~~~~~~~~~~~l~ 76 (566)
.||||++|+++|++.|.+ |. .. ..+.|||+||++.+++.+||+||+.++.... + .......+++.++++
T Consensus 42 sGKSTLl~~l~Gl~~p~~---G~--I~--~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~ 114 (253)
T 2nq2_C 42 CGKSTLLDLLLGIHRPIQ---GK--IE--VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALD 114 (253)
T ss_dssp SSHHHHHHHHTTSSCCSE---EE--EE--ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCCCCC---cE--EE--EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHH
Confidence 599999999999997653 11 11 2346999999999998999999998865322 2 123344678899999
Q ss_pred HcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEecCChhHHHh
Q psy7366 77 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEA 155 (566)
Q Consensus 77 ~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiisH~~~~~~~ 155 (566)
.+||....++++.+||||||||++||+||+.+|++|||||||++||+.+++++.++|++++++ |+|||++|||++++..
T Consensus 115 ~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~ 194 (253)
T 2nq2_C 115 YLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVA 194 (253)
T ss_dssp HTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHH
T ss_pred HcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHH
Confidence 999998899999999999999999999999999999999999999999999999999999776 9999999999999999
Q ss_pred hcCEEEEEeCCEEEEecChhHHH
Q psy7366 156 LCTKLTIMVNGQFTCLGSATHLK 178 (566)
Q Consensus 156 ~~d~i~vl~~G~i~~~g~~~~~~ 178 (566)
+||||++|++|+ +..|+++++.
T Consensus 195 ~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 195 IANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp HCSEEEEEETTE-EEEEEHHHHC
T ss_pred hCCEEEEEeCCe-EecCCHHHHh
Confidence 999999999999 9889887763
No 86
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.7e-35 Score=321.88 Aligned_cols=192 Identities=22% Similarity=0.313 Sum_probs=152.0
Q ss_pred eeEEEeCCcCCCcceeeeeeEEE-eCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEE-----------EEcCccCCCch
Q psy7366 347 RLFKIYANSKGTKPAVNQISFGV-GRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA-----------YVMNHSIRDSM 414 (566)
Q Consensus 347 ~l~~~y~~~~~~~~~l~~isl~i-~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i-----------~~~g~~~~~~~ 414 (566)
+.+..|+. + -|+-..|.+ ++||++||+||||||||||+|+|+|+++|++|+| .++|+++....
T Consensus 4 ~~~~~~~~---~--~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~ 78 (538)
T 3ozx_A 4 EVIHRYKV---N--GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYF 78 (538)
T ss_dssp CEEEESST---T--SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHH
T ss_pred CCceecCC---C--ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHH
Confidence 45677862 2 344445554 5999999999999999999999999999999998 56676653211
Q ss_pred -HHh--cCceEEEecCC----CCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHH
Q psy7366 415 -DLV--RSYIGYCPQFD----ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLS 487 (566)
Q Consensus 415 -~~~--~~~i~~v~q~~----~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~ 487 (566)
... ...+...+|.. .++. .++.+++... .. .+++.++++.+++....++++.+|||||||||+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~l~~~----~~-----~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~ 148 (538)
T 3ozx_A 79 KELYSNELKIVHKIQYVEYASKFLK-GTVNEILTKI----DE-----RGKKDEVKELLNMTNLWNKDANILSGGGLQRLL 148 (538)
T ss_dssp HHHHTTCCCEEEECSCTTGGGTTCC-SBHHHHHHHH----CC-----SSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHH
T ss_pred HHHhhcccchhhccchhhhhhhhcc-CcHHHHhhcc----hh-----HHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH
Confidence 111 12344445543 2332 3787765321 11 124678899999999999999999999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCE
Q psy7366 488 TAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554 (566)
Q Consensus 488 la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~ 554 (566)
|||||+.+|++|||||||++||+.++..+.++|+++++ |+|||+||||++++..+||++++|++|.
T Consensus 149 iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 149 VAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 99999999999999999999999999999999999965 9999999999999999999999998653
No 87
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=5.8e-35 Score=294.11 Aligned_cols=178 Identities=20% Similarity=0.221 Sum_probs=147.5
Q ss_pred CCcchHHHHHhccccCCC---ccCCCCCc-----ccccccceeEEcCCCCCC--CCCCHHHHHHHHHHh----cCCChhh
Q psy7366 1 MGLTTTPKRVVTLLLTTQ---KVPGSNPT-----IDKNLSYIGYCPQFDALN--DRLTPREHLEFYSRV----RNVPSVL 66 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~-----~~~~~~~ig~v~Q~~~l~--~~~tv~e~l~~~~~~----~~~~~~~ 66 (566)
.||||++|+++|++.|++ .+.+.... .....+.||||||++.++ ..+||+||+.++... ++....+
T Consensus 58 sGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~ 137 (279)
T 2ihy_A 58 AGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDE 137 (279)
T ss_dssp SSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHH
T ss_pred CcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHH
Confidence 599999999999998765 23332211 111235699999998643 356999999875321 1222334
Q ss_pred HHHHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEE--E
Q psy7366 67 LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV--I 144 (566)
Q Consensus 67 ~~~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tv--i 144 (566)
..+++.++++.+||....++++.+|||||||||+||+||+.+|++|||||||++||+.++++++++|++++++|+|| |
T Consensus 138 ~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~i 217 (279)
T 2ihy_A 138 IRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMI 217 (279)
T ss_dssp HHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred HHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 56788999999999988999999999999999999999999999999999999999999999999999997669999 9
Q ss_pred EecCChhHHHhhcCEEEEEeCCEEEEecChhHHH
Q psy7366 145 LTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 178 (566)
Q Consensus 145 iisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~ 178 (566)
++|||++++..+||||++|++|+++..|+++++.
T Consensus 218 ivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 251 (279)
T 2ihy_A 218 YVTHFIEEITANFSKILLLKDGQSIQQGAVEDIL 251 (279)
T ss_dssp EEESCGGGCCTTCCEEEEEETTEEEEEEEHHHHC
T ss_pred EEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999999999988764
No 88
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=2e-34 Score=285.38 Aligned_cols=173 Identities=18% Similarity=0.247 Sum_probs=147.4
Q ss_pred CCcchHHHHHhccccC-CC-ccCCCCCcc---cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy7366 1 MGLTTTPKRVVTLLLT-TQ-KVPGSNPTI---DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 75 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~-~~-~~~~~~~~~---~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l 75 (566)
.||||++|+++|++.| |+ .+.+..... ....+.|||+||++.+++.+||+||+.++.. ...+ .+++.+++
T Consensus 37 sGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~-~~~~----~~~~~~~l 111 (249)
T 2qi9_C 37 AGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQH-DKTR----TELLNDVA 111 (249)
T ss_dssp SSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCS-STTC----HHHHHHHH
T ss_pred CcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhc-cCCc----HHHHHHHH
Confidence 5999999999999866 33 122221110 1123469999999999999999999987531 1111 56788999
Q ss_pred HHcCCCcccccccccCChhHHHHHHHHHHHhCCCC-------EEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecC
Q psy7366 76 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP-------LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 148 (566)
Q Consensus 76 ~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~-------vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH 148 (566)
+.+|++...++++.+||||||||++||+||+.+|+ +|||||||++||+.+++.++++|++++++|+|||++||
T Consensus 112 ~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtH 191 (249)
T 2qi9_C 112 GALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSH 191 (249)
T ss_dssp HHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred HHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 99999998999999999999999999999999999 99999999999999999999999999777999999999
Q ss_pred ChhHHHhhcCEEEEEeCCEEEEecChhHHH
Q psy7366 149 NMEECEALCTKLTIMVNGQFTCLGSATHLK 178 (566)
Q Consensus 149 ~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~ 178 (566)
|++++..+||||++|++|+++..|+++++.
T Consensus 192 d~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 221 (249)
T 2qi9_C 192 DLNHTLRHAHRAWLLKGGKMLASGRREEVL 221 (249)
T ss_dssp CHHHHHHHCSEEEEEETTEEEEEEEHHHHS
T ss_pred CHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999888764
No 89
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=4.6e-34 Score=283.59 Aligned_cols=176 Identities=19% Similarity=0.200 Sum_probs=141.0
Q ss_pred CCcchHHHHHhcc--ccCCC---ccCCCCCcc---c-ccccceeEEcCCCCCCCCCCHHHHHHHHHHh-cC--CChhhHH
Q psy7366 1 MGLTTTPKRVVTL--LLTTQ---KVPGSNPTI---D-KNLSYIGYCPQFDALNDRLTPREHLEFYSRV-RN--VPSVLLN 68 (566)
Q Consensus 1 ~Gktt~~k~~~~~--~~~~~---~~~~~~~~~---~-~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~-~~--~~~~~~~ 68 (566)
.||||++|+++|+ +.|.+ .+.+..... . .....|+|+||++.+++.+||.||+.+.... .+ .+..+..
T Consensus 40 sGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~ 119 (250)
T 2d2e_A 40 AGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFW 119 (250)
T ss_dssp SSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHH
Confidence 5999999999998 43432 233322111 1 1124599999999999999999999886532 22 2333455
Q ss_pred HHHHHHHHHcCCC-ccccccccc-CChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEe
Q psy7366 69 TIVNESLNKFALG-HYSDREVRT-LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILT 146 (566)
Q Consensus 69 ~~~~~~l~~~gl~-~~~~~~~~~-LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviii 146 (566)
+++.++++.+|++ ...++++.+ ||||||||++||+||+.+|++|||||||++||+.+++.+.++|++++++|+|||++
T Consensus 120 ~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~v 199 (250)
T 2d2e_A 120 TKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVI 199 (250)
T ss_dssp HHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEE
T ss_pred HHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 7789999999994 778999999 99999999999999999999999999999999999999999999997679999999
Q ss_pred cCChhHHHhh-cCEEEEEeCCEEEEecChhH
Q psy7366 147 SHNMEECEAL-CTKLTIMVNGQFTCLGSATH 176 (566)
Q Consensus 147 sH~~~~~~~~-~d~i~vl~~G~i~~~g~~~~ 176 (566)
|||++++..+ ||||++|++|+++..|+++.
T Consensus 200 tHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 200 THYQRILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp CSSSGGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred ecCHHHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 9999999988 59999999999999998763
No 90
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.2e-33 Score=283.00 Aligned_cols=178 Identities=17% Similarity=0.190 Sum_probs=146.3
Q ss_pred CCcchHHHHHhccc--cC--CC-ccCCCCCcc---cc-cccceeEEcCCCCCCCCCCHHHHHHHHHHh----cC---CCh
Q psy7366 1 MGLTTTPKRVVTLL--LT--TQ-KVPGSNPTI---DK-NLSYIGYCPQFDALNDRLTPREHLEFYSRV----RN---VPS 64 (566)
Q Consensus 1 ~Gktt~~k~~~~~~--~~--~~-~~~~~~~~~---~~-~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~----~~---~~~ 64 (566)
.||||++|+++|++ .| |+ .+.+..... .. ...+|||+||++.+++.+||.||+.+.... .+ .+.
T Consensus 57 sGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~ 136 (267)
T 2zu0_C 57 SGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDR 136 (267)
T ss_dssp SSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCH
T ss_pred CCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCH
Confidence 59999999999984 23 33 233322111 11 123599999999999999999999875421 12 233
Q ss_pred hhHHHHHHHHHHHcCCC-cccccccc-cCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q psy7366 65 VLLNTIVNESLNKFALG-HYSDREVR-TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC 142 (566)
Q Consensus 65 ~~~~~~~~~~l~~~gl~-~~~~~~~~-~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~t 142 (566)
.+..+++.++++.+|+. ...++++. +|||||||||+||+||+.+|++|||||||++||+.++++++++|++++++|+|
T Consensus 137 ~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~t 216 (267)
T 2zu0_C 137 FDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRS 216 (267)
T ss_dssp HHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCE
T ss_pred HHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Confidence 44567889999999996 56788887 59999999999999999999999999999999999999999999998767999
Q ss_pred EEEecCChhHHHhh-cCEEEEEeCCEEEEecChhHHH
Q psy7366 143 VILTSHNMEECEAL-CTKLTIMVNGQFTCLGSATHLK 178 (566)
Q Consensus 143 viiisH~~~~~~~~-~d~i~vl~~G~i~~~g~~~~~~ 178 (566)
||++|||++++..+ ||||++|++|+++..|+++++.
T Consensus 217 viivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 253 (267)
T 2zu0_C 217 FIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVK 253 (267)
T ss_dssp EEEECSSGGGGGTSCCSEEEEEETTEEEEEECTTHHH
T ss_pred EEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHHHHh
Confidence 99999999999886 9999999999999999988764
No 91
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.9e-33 Score=280.46 Aligned_cols=170 Identities=22% Similarity=0.269 Sum_probs=145.2
Q ss_pred CCcchHHHHHhccccCCC---ccCCCCCccccccccee-EEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy7366 1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTIDKNLSYIG-YCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLN 76 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~~~~~~~ig-~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~ 76 (566)
.||||++|+++|++ |.+ .+.+.........+.|| |+||++.+ .+||.||+.++..... ...+++.++++
T Consensus 41 sGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~~----~~~~~~~~~l~ 113 (263)
T 2pjz_A 41 SGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELKG----LDRDLFLEMLK 113 (263)
T ss_dssp SSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHTC----CCHHHHHHHHH
T ss_pred CCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhcc----hHHHHHHHHHH
Confidence 59999999999999 876 23332111001135799 99999987 8999999998765432 22467889999
Q ss_pred HcCCC-cccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHh
Q psy7366 77 KFALG-HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEA 155 (566)
Q Consensus 77 ~~gl~-~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~ 155 (566)
.+|+. ...++++.+||||||||++||+||+.+|++|||||||++||+.++++++++|+++++ |||++|||++++..
T Consensus 114 ~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~~~~~ 190 (263)
T 2pjz_A 114 ALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELDMLNL 190 (263)
T ss_dssp HTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGGGGGG
T ss_pred HcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHHHHHH
Confidence 99998 889999999999999999999999999999999999999999999999999998743 99999999999999
Q ss_pred hcC-EEEEEeCCEEEEecChhHHHhh
Q psy7366 156 LCT-KLTIMVNGQFTCLGSATHLKSK 180 (566)
Q Consensus 156 ~~d-~i~vl~~G~i~~~g~~~~~~~~ 180 (566)
+|| +|++|++|+++..|+++++...
T Consensus 191 ~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 191 YKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp CTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred hcCceEEEEECCEEEEecCHHHHHhh
Confidence 999 9999999999999999988643
No 92
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=2.6e-33 Score=281.16 Aligned_cols=176 Identities=18% Similarity=0.218 Sum_probs=142.8
Q ss_pred CCcchHHHHHhccccCCC---ccCCCCCcc---cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhH-----HH
Q psy7366 1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI---DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLL-----NT 69 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~---~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~-----~~ 69 (566)
.||||++|+++|++.|.+ .+.+.+... ....+.||||||++.+++ .||+||+.++..... ...+. ..
T Consensus 56 sGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~-~~~~~~~~~~~~ 133 (271)
T 2ixe_A 56 SGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRTP-TMEEITAVAMES 133 (271)
T ss_dssp SSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSCC-CHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhcccCC-hHHHHHHHHHHH
Confidence 599999999999998765 233322111 112346999999999887 599999987642211 10111 12
Q ss_pred HHHHHHHHc--CCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEe
Q psy7366 70 IVNESLNKF--ALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS-EGRCVILT 146 (566)
Q Consensus 70 ~~~~~l~~~--gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviii 146 (566)
.+.++++.+ |++...++++.+|||||||||+|||||+.+|+||||||||++||+.++..++++|+++++ .|+|||+|
T Consensus 134 ~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviiv 213 (271)
T 2ixe_A 134 GAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLI 213 (271)
T ss_dssp TCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEE
T ss_pred hHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEE
Confidence 356778888 787788999999999999999999999999999999999999999999999999999854 49999999
Q ss_pred cCChhHHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366 147 SHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 179 (566)
Q Consensus 147 sH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~ 179 (566)
|||++++.. ||+|++|++|+++..|+++++..
T Consensus 214 tHd~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 214 TQQLSLAER-AHHILFLKEGSVCEQGTHLQLME 245 (271)
T ss_dssp CSCHHHHTT-CSEEEEEETTEEEEEECHHHHHH
T ss_pred eCCHHHHHh-CCEEEEEECCEEEEECCHHHHHh
Confidence 999999875 99999999999999999988754
No 93
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=1.8e-33 Score=272.18 Aligned_cols=162 Identities=20% Similarity=0.241 Sum_probs=136.6
Q ss_pred CCcchHHHHHhccccCCC---ccCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q psy7366 1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNK 77 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~ 77 (566)
.||||++|+++|++.|.+ .+.+.+.. ...+.|||+||++.+++.+||.||+.++....+. ..+ .+++.++++.
T Consensus 46 sGKSTLlk~l~Gl~~p~~G~I~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~-~~~~~~~l~~ 121 (214)
T 1sgw_A 46 IGKTTLLKTISTYLKPLKGEIIYNGVPIT--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KVN-KNEIMDALES 121 (214)
T ss_dssp SSHHHHHHHHTTSSCCSEEEEEETTEEGG--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CCC-HHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCCeEEEECCEEhh--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-chH-HHHHHHHHHH
Confidence 599999999999997665 23332211 2345799999999999999999999987655443 223 5678999999
Q ss_pred cCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhc
Q psy7366 78 FALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALC 157 (566)
Q Consensus 78 ~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~ 157 (566)
+|++.. ++++.+||||||||++||+||+.+|++|||||||++||+.+++.+.++|++++++|+|||++|||++++..+|
T Consensus 122 ~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~ 200 (214)
T 1sgw_A 122 VEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVN 200 (214)
T ss_dssp TTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEE
T ss_pred cCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence 999888 9999999999999999999999999999999999999999999999999999767999999999999999999
Q ss_pred CEEEEEeCCEE
Q psy7366 158 TKLTIMVNGQF 168 (566)
Q Consensus 158 d~i~vl~~G~i 168 (566)
|+|+.+ .|+|
T Consensus 201 d~v~~~-~~~~ 210 (214)
T 1sgw_A 201 ENLHKY-STKI 210 (214)
T ss_dssp EEGGGG-BC--
T ss_pred CEEEEe-CCcc
Confidence 998744 4443
No 94
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1e-32 Score=273.16 Aligned_cols=170 Identities=19% Similarity=0.304 Sum_probs=137.0
Q ss_pred CCcchHHHHHhccccCCC---ccCCCCCcc---cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy7366 1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI---DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNES 74 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~---~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~ 74 (566)
.||||++|+++|++.|.+ .+.+.+... ....+.||||||++.+++ .||+||+.++.. ..+ .+++.++
T Consensus 46 sGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~--~~~----~~~~~~~ 118 (247)
T 2ff7_A 46 SGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANP--GMS----VEKVIYA 118 (247)
T ss_dssp SSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTCT--TCC----HHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccCC--CCC----HHHHHHH
Confidence 599999999999997755 233322111 112346999999999886 599999987531 111 2345566
Q ss_pred HHHcCCCc-----------ccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy7366 75 LNKFALGH-----------YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV 143 (566)
Q Consensus 75 l~~~gl~~-----------~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tv 143 (566)
++.+|+.. ..++++.+|||||||||+||+||+.+|++|||||||++||+.+++.++++|++++ +|+||
T Consensus 119 l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tv 197 (247)
T 2ff7_A 119 AKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTV 197 (247)
T ss_dssp HHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEE
T ss_pred HHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEE
Confidence 66666653 3345678999999999999999999999999999999999999999999999984 69999
Q ss_pred EEecCChhHHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366 144 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 179 (566)
Q Consensus 144 iiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~ 179 (566)
|++||+++++.. ||||++|++|+++..|+++++..
T Consensus 198 iivtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 232 (247)
T 2ff7_A 198 IIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKELLS 232 (247)
T ss_dssp EEECSSGGGGTT-SSEEEEEETTEEEEEECHHHHHT
T ss_pred EEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHHHh
Confidence 999999998865 99999999999999999988753
No 95
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.98 E-value=1.3e-32 Score=279.60 Aligned_cols=171 Identities=20% Similarity=0.288 Sum_probs=136.6
Q ss_pred CCcchHHHHHhccccCCC---ccCCCCCcc---cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy7366 1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI---DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNES 74 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~---~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~ 74 (566)
.||||++|++++++-|.+ .+.+.+... ....+.||||||+|.+|+ .||+||+.|+.... .. .++.++
T Consensus 91 sGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~~--~~----~~~~~~ 163 (306)
T 3nh6_A 91 AGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRVTA--GN----DEVEAA 163 (306)
T ss_dssp HHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTSTTC--CH----HHHHHH
T ss_pred chHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhcccC--CH----HHHHHH
Confidence 489999999999997755 233322111 122457999999999985 59999998764322 12 223333
Q ss_pred HHHc-----------CCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy7366 75 LNKF-----------ALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV 143 (566)
Q Consensus 75 l~~~-----------gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tv 143 (566)
++.. |++...++...+|||||||||+|||||+.+|+||||||||++||+.+...+.+.|+++. .++||
T Consensus 164 ~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~-~~~Tv 242 (306)
T 3nh6_A 164 AQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC-ANRTT 242 (306)
T ss_dssp HHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH-TTSEE
T ss_pred HHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEE
Confidence 3333 34445567778999999999999999999999999999999999999999999999985 47999
Q ss_pred EEecCChhHHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366 144 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK 180 (566)
Q Consensus 144 iiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~ 180 (566)
|+||||++.+.. ||||++|++|+|++.|+++++...
T Consensus 243 i~itH~l~~~~~-aD~i~vl~~G~iv~~G~~~el~~~ 278 (306)
T 3nh6_A 243 IVVAHRLSTVVN-ADQILVIKDGCIVERGRHEALLSR 278 (306)
T ss_dssp EEECCSHHHHHT-CSEEEEEETTEEEEEECHHHHHHH
T ss_pred EEEEcChHHHHc-CCEEEEEECCEEEEECCHHHHHhc
Confidence 999999999987 999999999999999999998654
No 96
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.97 E-value=2.2e-32 Score=270.37 Aligned_cols=171 Identities=22% Similarity=0.317 Sum_probs=139.5
Q ss_pred CCcchHHHHHhccccCCC---ccCCCCCc---ccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy7366 1 MGLTTTPKRVVTLLLTTQ---KVPGSNPT---IDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNES 74 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~---~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~ 74 (566)
.||||++|+++|++.|.+ .+.+.+.. .....+.||||||++.+++ .||+||+.++.. ... ..+++.++
T Consensus 39 sGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~-~~~----~~~~~~~~ 112 (243)
T 1mv5_A 39 GGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLE-GDY----TDEDLWQV 112 (243)
T ss_dssp SSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTT-SCS----CHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhhcc-CCC----CHHHHHHH
Confidence 599999999999997654 23332111 1122457999999999887 599999987521 111 13456788
Q ss_pred HHHcCCCcccc-----------cccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy7366 75 LNKFALGHYSD-----------REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV 143 (566)
Q Consensus 75 l~~~gl~~~~~-----------~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tv 143 (566)
++.+|+.+..+ +++.+||||||||++||+||+.+|++|||||||++||+.+++.+++.|++++ +|+||
T Consensus 113 l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tv 191 (243)
T 1mv5_A 113 LDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTT 191 (243)
T ss_dssp HHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEE
T ss_pred HHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEE
Confidence 88888866543 4568999999999999999999999999999999999999999999999987 69999
Q ss_pred EEecCChhHHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366 144 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 179 (566)
Q Consensus 144 iiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~ 179 (566)
|++|||++++. .||||++|++|+++..|+++++..
T Consensus 192 i~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 192 LVIAHRLSTIV-DADKIYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp EEECCSHHHHH-HCSEEEEEETTEECCCSCHHHHHH
T ss_pred EEEeCChHHHH-hCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999886 599999999999999999988754
No 97
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.97 E-value=1.2e-31 Score=267.61 Aligned_cols=170 Identities=21% Similarity=0.312 Sum_probs=135.5
Q ss_pred CCcchHHHHHhccccC-CC-ccCCCCCcc---cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy7366 1 MGLTTTPKRVVTLLLT-TQ-KVPGSNPTI---DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 75 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~-~~-~~~~~~~~~---~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l 75 (566)
.||||++|+++|++.+ |+ .+.+.+... ....+.||||||++.+++ .||+||+.++.. ... .+++.+++
T Consensus 57 sGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~--~~~----~~~~~~~l 129 (260)
T 2ghi_A 57 SGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL--DAT----DEEVIKAT 129 (260)
T ss_dssp SSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT--TCC----HHHHHHHH
T ss_pred CCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC--CCC----HHHHHHHH
Confidence 5999999999999854 11 123322111 112356999999999886 599999987531 111 24456677
Q ss_pred HHcCCCcc-----------cccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q psy7366 76 NKFALGHY-----------SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 144 (566)
Q Consensus 76 ~~~gl~~~-----------~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi 144 (566)
+.+++... .++++.+|||||||||+||+||+.+|+||||||||++||+.+++.++++|++++ +|+|||
T Consensus 130 ~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~-~~~tvi 208 (260)
T 2ghi_A 130 KSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR-KNRTLI 208 (260)
T ss_dssp HHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT-TTSEEE
T ss_pred HHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEE
Confidence 77766432 246788999999999999999999999999999999999999999999999985 489999
Q ss_pred EecCChhHHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366 145 LTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 179 (566)
Q Consensus 145 iisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~ 179 (566)
++|||++++. .||+|++|++|+++..|+++++..
T Consensus 209 ivtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 209 IIAHRLSTIS-SAESIILLNKGKIVEKGTHKDLLK 242 (260)
T ss_dssp EECSSGGGST-TCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEcCCHHHHH-hCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999886 599999999999999999988754
No 98
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.97 E-value=4.5e-31 Score=258.57 Aligned_cols=162 Identities=22% Similarity=0.298 Sum_probs=127.3
Q ss_pred CCcchHHHHHhccccCCCccCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCC
Q psy7366 1 MGLTTTPKRVVTLLLTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFAL 80 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl 80 (566)
.||||++|+++|++.|.+ |. . .....|||+||++.+++. ||+||+.++.. ... .+..+.++.+++
T Consensus 45 sGKSTLl~~l~Gl~~p~~---G~--i--~~~g~i~~v~q~~~~~~~-tv~enl~~~~~---~~~----~~~~~~~~~~~l 109 (229)
T 2pze_A 45 AGKTSLLMMIMGELEPSE---GK--I--KHSGRISFCSQFSWIMPG-TIKENIIFGVS---YDE----YRYRSVIKACQL 109 (229)
T ss_dssp SSHHHHHHHHTTSSCCSE---EE--E--EECSCEEEECSSCCCCSB-CHHHHHHTTSC---CCH----HHHHHHHHHTTC
T ss_pred CCHHHHHHHHhCCCcCCc---cE--E--EECCEEEEEecCCcccCC-CHHHHhhccCC---cCh----HHHHHHHHHhCc
Confidence 599999999999986654 11 0 001249999999998885 99999987531 111 122334444444
Q ss_pred Cc-----------ccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEecC
Q psy7366 81 GH-----------YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTC-IERAVSEGRCVILTSH 148 (566)
Q Consensus 81 ~~-----------~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~-l~~l~~~g~tviiisH 148 (566)
.. ..++++.+||||||||++||+||+.+|++|||||||++||+.+++.+++. ++++. +|+|||++||
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH 188 (229)
T 2pze_A 110 EEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTS 188 (229)
T ss_dssp HHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECC
T ss_pred HHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcC
Confidence 32 12345689999999999999999999999999999999999999999997 45553 4899999999
Q ss_pred ChhHHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366 149 NMEECEALCTKLTIMVNGQFTCLGSATHLKS 179 (566)
Q Consensus 149 ~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~ 179 (566)
+++++. .||+|++|++|+++..|+++++..
T Consensus 189 ~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~ 218 (229)
T 2pze_A 189 KMEHLK-KADKILILHEGSSYFYGTFSELQN 218 (229)
T ss_dssp CHHHHH-HCSEEEEEETTEEEEEECHHHHHT
T ss_pred ChHHHH-hCCEEEEEECCEEEEECCHHHHHh
Confidence 999986 499999999999999999988754
No 99
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.97 E-value=1.3e-31 Score=280.67 Aligned_cols=169 Identities=20% Similarity=0.238 Sum_probs=140.5
Q ss_pred CCcchHHHHHhccccCCC---ccCCCCCcc---cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy7366 1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI---DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNES 74 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~---~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~ 74 (566)
+||||++|+|+|++. .+ .+.+.+... ....+.||||||++.+|+ +||+||+.+.. ....+++.++
T Consensus 58 sGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~-------~~~~~~v~~~ 128 (390)
T 3gd7_A 58 SGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA-------AHSDQEIWKV 128 (390)
T ss_dssp SSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC-------CSCHHHHHHH
T ss_pred ChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc-------ccCHHHHHHH
Confidence 599999999999874 22 223322111 112357999999999987 69999996432 1124677889
Q ss_pred HHHcCCCccccccccc-----------CChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy7366 75 LNKFALGHYSDREVRT-----------LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV 143 (566)
Q Consensus 75 l~~~gl~~~~~~~~~~-----------LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tv 143 (566)
++.+||....++++.+ |||||||||+|||||+.+|+||||||||++||+..+.++.+.|+++ ..|.|+
T Consensus 129 l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~-~~~~tv 207 (390)
T 3gd7_A 129 ADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQA-FADCTV 207 (390)
T ss_dssp HHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTT-TTTSCE
T ss_pred HHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH-hCCCEE
Confidence 9999999888988888 9999999999999999999999999999999999999999999986 458999
Q ss_pred EEecCChhHHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366 144 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK 180 (566)
Q Consensus 144 iiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~ 180 (566)
|++|||++.+ ..||||++|++|+|+..|+++++...
T Consensus 208 i~vtHd~e~~-~~aDri~vl~~G~i~~~g~~~el~~~ 243 (390)
T 3gd7_A 208 ILCEARIEAM-LECDQFLVIEENKVRQYDSILELYHY 243 (390)
T ss_dssp EEECSSSGGG-TTCSEEEEEETTEEEEESSHHHHHHC
T ss_pred EEEEcCHHHH-HhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999998655 56999999999999999999998764
No 100
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.97 E-value=1.9e-30 Score=276.38 Aligned_cols=196 Identities=16% Similarity=0.214 Sum_probs=146.7
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCC--------------------------------------CCcc
Q psy7366 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK--------------------------------------PTSG 401 (566)
Q Consensus 360 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--------------------------------------~~~G 401 (566)
.++++++|++.+| +++|+|||||||||||++|.++.. +.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 4789999999999 999999999999999999977664 4578
Q ss_pred EEEEcCccCCCc-hHH-hcCceEEEecCCCCCCCCCHHHHHHHHHHhcC----------------------CCc------
Q psy7366 402 NAYVMNHSIRDS-MDL-VRSYIGYCPQFDALNDRLTPREHLEFYSRVRN----------------------VPS------ 451 (566)
Q Consensus 402 ~i~~~g~~~~~~-~~~-~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~----------------------~~~------ 451 (566)
+++++|++++.. ... .+..+++++|+..++.. +..++..+.-.... ...
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 899999988642 223 34458999998765543 55444333211000 000
Q ss_pred --------------------------------hHHHHHHHHHHHHcCCCCc-----------------------cc----
Q psy7366 452 --------------------------------VLLNTIVNESLNKFALGHY-----------------------SD---- 472 (566)
Q Consensus 452 --------------------------------~~~~~~~~~~l~~~~l~~~-----------------------~~---- 472 (566)
......+.+.+..+++... ..
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 0011223445555555320 00
Q ss_pred ---cCcCc-CChhHHHHHHHHHHHcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCE
Q psy7366 473 ---REVRT-LSGGNKRKLSTAIALLGNP--PLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTK 546 (566)
Q Consensus 473 ---~~~~~-LSgGqkqrv~la~al~~~p--~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~dr 546 (566)
+++.. |||||||||+||++|+.+| ++|||||||+|||+.++..+.+.|+++. +|.|||+||||++++ .+||+
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~~~-~~~d~ 364 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQIA-ARAHH 364 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHHH-TTCSE
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHH-hhcCe
Confidence 33334 5999999999999999999 9999999999999999999999999987 589999999999776 57999
Q ss_pred EEEE----ECCEEEEec
Q psy7366 547 LTIM----VNGQFTCLG 559 (566)
Q Consensus 547 v~~l----~~G~i~~~g 559 (566)
+++| ++|+++...
T Consensus 365 i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 365 HYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEEEEEETTEEEEEE
T ss_pred EEEEEEeccCCceEEEE
Confidence 9999 999987653
No 101
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.2e-34 Score=306.56 Aligned_cols=195 Identities=14% Similarity=0.115 Sum_probs=160.5
Q ss_pred CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCcc-E-EEEcCccCCCchHHhc
Q psy7366 341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG-N-AYVMNHSIRDSMDLVR 418 (566)
Q Consensus 341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G-~-i~~~g~~~~~~~~~~~ 418 (566)
.+++++|+++.|+ ++||++++|++++|+||||||||||+|+|+|+++|++| + |+++|. .+
T Consensus 117 ~mi~~~nl~~~y~----------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~--------~~ 178 (460)
T 2npi_A 117 TMKYIYNLHFMLE----------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD--------PQ 178 (460)
T ss_dssp THHHHHHHHHHHH----------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC--------TT
T ss_pred chhhhhhhhehhh----------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC--------cc
Confidence 3577888887763 69999999999999999999999999999999999999 9 999983 24
Q ss_pred CceEEEecCCC---CCCCCCHHHHHHHHHHh-cCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHH--H
Q psy7366 419 SYIGYCPQFDA---LNDRLTPREHLEFYSRV-RNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIA--L 492 (566)
Q Consensus 419 ~~i~~v~q~~~---l~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~a--l 492 (566)
+.++|+||+.. +++.+|+.||+ ++... .+.. ...++.++++.+|+.+..+ +.+|||||||||+|||| |
T Consensus 179 ~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~---~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL 252 (460)
T 2npi_A 179 QPIFTVPGCISATPISDILDAQLPT-WGQSLTSGAT---LLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRL 252 (460)
T ss_dssp SCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCC---SSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHH
T ss_pred CCeeeeccchhhcccccccchhhhh-cccccccCcc---hHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHh
Confidence 67999999974 34567999888 54321 1111 1123456788889887665 89999999999999999 9
Q ss_pred cCCCCE----EEEeC-CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHH------HHHhhCCE-----EEEEE-CCEE
Q psy7366 493 LGNPPL----IFLDE-PTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME------ECEALCTK-----LTIMV-NGQF 555 (566)
Q Consensus 493 ~~~p~l----llLDE-Pt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~------~~~~~~dr-----v~~l~-~G~i 555 (566)
+.+|++ ||||| ||++||+. +..+.++++++ +.|+|+||||.+ ++..+||| +++|+ +|++
T Consensus 253 ~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~---~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~i 328 (460)
T 2npi_A 253 HLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL---NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGV 328 (460)
T ss_dssp HHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT---TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTC
T ss_pred ccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh---CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcE
Confidence 999999 99999 99999999 66666555543 789999999987 88899999 99999 9999
Q ss_pred EEecCcccc
Q psy7366 556 TCLGSATHL 564 (566)
Q Consensus 556 ~~~g~~~~l 564 (566)
+ .|+++++
T Consensus 329 v-~g~~~~~ 336 (460)
T 2npi_A 329 S-AVDDVYK 336 (460)
T ss_dssp C-CCCHHHH
T ss_pred E-ECCHHHH
Confidence 9 8887654
No 102
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.97 E-value=9.7e-31 Score=257.47 Aligned_cols=165 Identities=19% Similarity=0.280 Sum_probs=127.7
Q ss_pred CCcchHHHHHhccccCCCccCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHH---HHHH
Q psy7366 1 MGLTTTPKRVVTLLLTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNE---SLNK 77 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~---~l~~ 77 (566)
.||||++|+++|++.|.+ |. . .....||||||+|.+ +.+||+||+.++... .... .+++.+ +++.
T Consensus 42 sGKSTLl~~l~Gl~~p~~---G~--I--~~~g~i~~v~Q~~~~-~~~tv~enl~~~~~~---~~~~-~~~~~~~~~l~~~ 109 (237)
T 2cbz_A 42 CGKSSLLSALLAEMDKVE---GH--V--AIKGSVAYVPQQAWI-QNDSLRENILFGCQL---EEPY-YRSVIQACALLPD 109 (237)
T ss_dssp SSHHHHHHHHTTCSEEEE---EE--E--EECSCEEEECSSCCC-CSEEHHHHHHTTSCC---CTTH-HHHHHHHTTCHHH
T ss_pred CCHHHHHHHHhcCCCCCC---ce--E--EECCEEEEEcCCCcC-CCcCHHHHhhCcccc---CHHH-HHHHHHHHhhHHH
Confidence 599999999999987543 11 0 001149999999875 478999999875421 1111 112222 1222
Q ss_pred cCCC-----cccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHH---HHHhCCCEEEEecCC
Q psy7366 78 FALG-----HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIE---RAVSEGRCVILTSHN 149 (566)
Q Consensus 78 ~gl~-----~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~---~l~~~g~tviiisH~ 149 (566)
+++. ...++++.+||||||||++||+||+.+|++|||||||++||+.++..+++.|. ++ .+|+|||++|||
T Consensus 110 ~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~-~~~~tviivtH~ 188 (237)
T 2cbz_A 110 LEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGM-LKNKTRILVTHS 188 (237)
T ss_dssp HTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTST-TTTSEEEEECSC
T ss_pred HHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhh-cCCCEEEEEecC
Confidence 3321 12578899999999999999999999999999999999999999999999995 34 358999999999
Q ss_pred hhHHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366 150 MEECEALCTKLTIMVNGQFTCLGSATHLKS 179 (566)
Q Consensus 150 ~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~ 179 (566)
++++. .||+|++|++|+++..|+++++..
T Consensus 189 ~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 189 MSYLP-QVDVIIVMSGGKISEMGSYQELLA 217 (237)
T ss_dssp STTGG-GSSEEEEEETTEEEEEECHHHHHH
T ss_pred hHHHH-hCCEEEEEeCCEEEEeCCHHHHhh
Confidence 99875 699999999999999999988754
No 103
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.96 E-value=8.1e-30 Score=282.79 Aligned_cols=171 Identities=16% Similarity=0.279 Sum_probs=138.7
Q ss_pred CCcchHHHHHhccccCCC---ccCCCCCc---ccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy7366 1 MGLTTTPKRVVTLLLTTQ---KVPGSNPT---IDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNES 74 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~---~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~ 74 (566)
.||||++|+++|++-|.+ .+.|.+.. ....++.||||||+|.+++. ||+||+.++.. ...+ ++++.++
T Consensus 380 sGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~-~~~~----~~~~~~~ 453 (582)
T 3b5x_A 380 SGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAE-GEYT----REQIEQA 453 (582)
T ss_pred CCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccc-cHHHHHhccCC-CCCC----HHHHHHH
Confidence 599999999999998765 23332211 11234579999999999875 99999987531 1122 3456667
Q ss_pred HHHcCCCcc-----------cccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy7366 75 LNKFALGHY-----------SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV 143 (566)
Q Consensus 75 l~~~gl~~~-----------~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tv 143 (566)
++.+|+.+. .++...+||||||||++|||||+++|++|||||||++||+.+++.+.+.|+++. +|+|+
T Consensus 454 ~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tv 532 (582)
T 3b5x_A 454 ARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ-KNKTV 532 (582)
T ss_pred HHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEE
Confidence 777766543 344568999999999999999999999999999999999999999999999985 49999
Q ss_pred EEecCChhHHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366 144 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 179 (566)
Q Consensus 144 iiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~ 179 (566)
|+||||++.+. .||||++|++|++++.|+++++..
T Consensus 533 i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 533 LVIAHRLSTIE-QADEILVVDEGEIIERGRHADLLA 567 (582)
T ss_pred EEEecCHHHHH-hCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999987 699999999999999999998764
No 104
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.96 E-value=9.9e-30 Score=282.09 Aligned_cols=172 Identities=17% Similarity=0.261 Sum_probs=139.3
Q ss_pred CCcchHHHHHhccccCCC---ccCCCCCcc---cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy7366 1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI---DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNES 74 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~---~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~ 74 (566)
.||||++|+++|++-|.+ .+.|.+... ...++.||||||+|.+++. ||+||+.++.. ...+ ++++.++
T Consensus 380 sGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~-~~~~----~~~~~~~ 453 (582)
T 3b60_A 380 SGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIAYART-EEYS----REQIEEA 453 (582)
T ss_dssp SSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTT-SCCC----HHHHHHH
T ss_pred CCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCC-CHHHHHhccCC-CCCC----HHHHHHH
Confidence 599999999999997765 233322111 1223469999999999875 99999987531 1122 3456666
Q ss_pred HHHcCCCc-----------ccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy7366 75 LNKFALGH-----------YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV 143 (566)
Q Consensus 75 l~~~gl~~-----------~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tv 143 (566)
++.+|+.+ ..++...+||||||||++|||||+++|++|||||||++||+.+++.+.+.|+++.+ |+|+
T Consensus 454 l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tv 532 (582)
T 3b60_A 454 ARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTS 532 (582)
T ss_dssp HHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEE
T ss_pred HHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEE
Confidence 76666643 33456689999999999999999999999999999999999999999999999864 9999
Q ss_pred EEecCChhHHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366 144 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK 180 (566)
Q Consensus 144 iiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~ 180 (566)
|+||||++.+. .||||++|++|++++.|+++++...
T Consensus 533 i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b60_A 533 LVIAHRLSTIE-QADEIVVVEDGIIVERGTHSELLAQ 568 (582)
T ss_dssp EEECSCGGGTT-TCSEEEEEETTEEEEEECHHHHHHH
T ss_pred EEEeccHHHHH-hCCEEEEEECCEEEEecCHHHHHHc
Confidence 99999999886 6999999999999999999998653
No 105
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.96 E-value=1.2e-29 Score=282.06 Aligned_cols=173 Identities=22% Similarity=0.288 Sum_probs=137.3
Q ss_pred CCcchHHHHHhccccCCC---ccCCCCCcc---cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy7366 1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI---DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNES 74 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~---~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~ 74 (566)
.||||++|+++|++-|.+ .+.|.+... ...++.||||||+|.+++. ||+||+.++.... ....++++.++
T Consensus 381 sGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~---~~~~~~~~~~~ 456 (595)
T 2yl4_A 381 SGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSC-SIAENIAYGADDP---SSVTAEEIQRV 456 (595)
T ss_dssp SSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSS-BHHHHHHTTSSST---TTSCHHHHHHH
T ss_pred CCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCC-CHHHHHhhcCCCc---cccCHHHHHHH
Confidence 599999999999997765 233322211 1223469999999999874 9999998764221 01124567778
Q ss_pred HHHcCCCcc-------cc----cccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy7366 75 LNKFALGHY-------SD----REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV 143 (566)
Q Consensus 75 l~~~gl~~~-------~~----~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tv 143 (566)
++.+|+.+. .+ ....+||||||||++|||||+++|++|||||||++||+.+++.+.+.|+++.+ |+|+
T Consensus 457 ~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tv 535 (595)
T 2yl4_A 457 AEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTV 535 (595)
T ss_dssp HHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEE
T ss_pred HHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEE
Confidence 888876432 23 33489999999999999999999999999999999999999999999999865 8999
Q ss_pred EEecCChhHHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366 144 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 179 (566)
Q Consensus 144 iiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~ 179 (566)
|+||||++.+.. ||||++|++|++++.|+++++.+
T Consensus 536 i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 570 (595)
T 2yl4_A 536 LVIAHRLSTIKN-ANMVAVLDQGKITEYGKHEELLS 570 (595)
T ss_dssp EEECCCHHHHHH-SSEEEEEETTEEEEEECSCC---
T ss_pred EEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHh
Confidence 999999999865 99999999999999999887653
No 106
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.96 E-value=7.6e-30 Score=282.91 Aligned_cols=175 Identities=21% Similarity=0.291 Sum_probs=138.1
Q ss_pred CCcchHHHHHhccccCCC---ccCCCCCccc---ccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHH----
Q psy7366 1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTID---KNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTI---- 70 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~~---~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~---- 70 (566)
.||||++|++++++-|.+ .+.+.+.... ..+++||||||+|.+++. ||+||+.++... .+..+..+.
T Consensus 380 sGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~~--~~~~~~~~~~~~~ 456 (587)
T 3qf4_A 380 SGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGRED--ATDDEIVEAAKIA 456 (587)
T ss_dssp SSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTCSS--CCHHHHHHHHHHT
T ss_pred CCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccCCC--CCHHHHHHHHHHh
Confidence 599999999999998765 2444332211 224579999999999865 999999875321 222222211
Q ss_pred -HHHHHHHc--CCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEec
Q psy7366 71 -VNESLNKF--ALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTS 147 (566)
Q Consensus 71 -~~~~l~~~--gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiis 147 (566)
+.+.++.+ |++...++...+||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++ .+|+|+|+||
T Consensus 457 ~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~it 535 (587)
T 3qf4_A 457 QIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRY-TKGCTTFIIT 535 (587)
T ss_dssp TCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHH-STTCEEEEEE
T ss_pred CcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHh-CCCCEEEEEe
Confidence 12233333 4555567788999999999999999999999999999999999999999999999987 4599999999
Q ss_pred CChhHHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366 148 HNMEECEALCTKLTIMVNGQFTCLGSATHLKSK 180 (566)
Q Consensus 148 H~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~ 180 (566)
||++.+. .||||++|++|++++.|+++++.+.
T Consensus 536 H~l~~~~-~~d~i~vl~~G~i~~~g~~~el~~~ 567 (587)
T 3qf4_A 536 QKIPTAL-LADKILVLHEGKVAGFGTHKELLEH 567 (587)
T ss_dssp SCHHHHT-TSSEEEEEETTEEEEEECHHHHHHH
T ss_pred cChHHHH-hCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999986 7999999999999999999998653
No 107
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.96 E-value=2.7e-29 Score=253.84 Aligned_cols=160 Identities=19% Similarity=0.235 Sum_probs=124.2
Q ss_pred CCcchHHHHHhccccCCCc-cCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHHcC
Q psy7366 1 MGLTTTPKRVVTLLLTTQK-VPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFA 79 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~~-~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g 79 (566)
.||||++|+++|++.|.+. +.. ...|||+||++.+++. ||+||+. +. .... .++.+.++.++
T Consensus 75 sGKSTLlk~l~Gl~~p~~G~I~~--------~g~i~~v~Q~~~l~~~-tv~enl~-~~---~~~~----~~~~~~~~~~~ 137 (290)
T 2bbs_A 75 AGKTSLLMMIMGELEPSEGKIKH--------SGRISFCSQNSWIMPG-TIKENII-GV---SYDE----YRYRSVIKACQ 137 (290)
T ss_dssp SSHHHHHHHHTTSSCEEEEEEEC--------CSCEEEECSSCCCCSS-BHHHHHH-TT---CCCH----HHHHHHHHHTT
T ss_pred CcHHHHHHHHhcCCCCCCcEEEE--------CCEEEEEeCCCccCcc-cHHHHhh-Cc---ccch----HHHHHHHHHhC
Confidence 5999999999999865431 111 1149999999998875 9999997 32 1111 12334444455
Q ss_pred CCcc-----------cccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHH-HHHHhCCCEEEEec
Q psy7366 80 LGHY-----------SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCI-ERAVSEGRCVILTS 147 (566)
Q Consensus 80 l~~~-----------~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l-~~l~~~g~tviiis 147 (566)
+... .++++.+||||||||++||+||+.+|++|||||||++||+.++..+++.+ +++. +|+|||++|
T Consensus 138 l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivt 216 (290)
T 2bbs_A 138 LEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVT 216 (290)
T ss_dssp CHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEEC
T ss_pred hHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEe
Confidence 4322 23456899999999999999999999999999999999999999999974 4553 589999999
Q ss_pred CChhHHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366 148 HNMEECEALCTKLTIMVNGQFTCLGSATHLKS 179 (566)
Q Consensus 148 H~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~ 179 (566)
|+++++. .||+|++|++|+++..|+++++..
T Consensus 217 Hd~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 217 SKMEHLK-KADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp CCHHHHH-HSSEEEEEETTEEEEEECHHHHHH
T ss_pred cCHHHHH-cCCEEEEEECCeEEEeCCHHHHhh
Confidence 9999886 599999999999999999988753
No 108
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.96 E-value=1.5e-29 Score=281.34 Aligned_cols=171 Identities=21% Similarity=0.280 Sum_probs=136.2
Q ss_pred CCcchHHHHHhccccCCC---ccCCCCCcc---cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy7366 1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI---DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNES 74 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~---~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~ 74 (566)
.||||++|+++|++-|.+ .+.|.+... ....++||||||+|.+++ .||+||+.++.. ..+.. ++.++
T Consensus 392 sGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~~--~~~~~----~~~~~ 464 (598)
T 3qf4_B 392 SGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFS-TTVKENLKYGNP--GATDE----EIKEA 464 (598)
T ss_dssp SSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCS-SBHHHHHHSSST--TCCTT----HHHHH
T ss_pred CcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCcccc-ccHHHHHhcCCC--CCCHH----HHHHH
Confidence 599999999999998765 233332211 122457999999999986 499999987532 12222 23344
Q ss_pred HHHcCCC-----------cccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy7366 75 LNKFALG-----------HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV 143 (566)
Q Consensus 75 l~~~gl~-----------~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tv 143 (566)
++..++. ...+....+||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++. +|+|+
T Consensus 465 ~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~ 543 (598)
T 3qf4_B 465 AKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTS 543 (598)
T ss_dssp TTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEE
T ss_pred HHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEE
Confidence 4444443 33345567999999999999999999999999999999999999999999999985 59999
Q ss_pred EEecCChhHHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366 144 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK 180 (566)
Q Consensus 144 iiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~ 180 (566)
|+||||++.+.. ||||++|++|++++.|+++++.+.
T Consensus 544 i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 579 (598)
T 3qf4_B 544 IIIAHRLNTIKN-ADLIIVLRDGEIVEMGKHDELIQK 579 (598)
T ss_dssp EEESCCTTHHHH-CSEEEEECSSSEEECSCHHHHHHT
T ss_pred EEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999976 999999999999999999998653
No 109
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.96 E-value=1.9e-29 Score=279.46 Aligned_cols=171 Identities=23% Similarity=0.300 Sum_probs=136.5
Q ss_pred CCcchHHHHHhccccCCC---ccCCCCCcc---cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy7366 1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTI---DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNES 74 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~---~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~ 74 (566)
.||||++|+++|++-|.+ .+.|.+... ....+.||||||+|.+++. ||+||+.++... .. .+++.+.
T Consensus 378 sGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~~~--~~----~~~~~~~ 450 (578)
T 4a82_A 378 GGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGRPT--AT----DEEVVEA 450 (578)
T ss_dssp SSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGCSS--CC----HHHHHHH
T ss_pred ChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCCCC--CC----HHHHHHH
Confidence 599999999999997765 233332211 1223579999999999876 999999875321 11 2334445
Q ss_pred HHHcCC-----------CcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy7366 75 LNKFAL-----------GHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV 143 (566)
Q Consensus 75 l~~~gl-----------~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tv 143 (566)
++..++ +...+....+||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++ .+|+|+
T Consensus 451 ~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~-~~~~t~ 529 (578)
T 4a82_A 451 AKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVL-SKDRTT 529 (578)
T ss_dssp HHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHH-TTTSEE
T ss_pred HHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHH-cCCCEE
Confidence 554444 33345666799999999999999999999999999999999999999999999987 458999
Q ss_pred EEecCChhHHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy7366 144 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK 180 (566)
Q Consensus 144 iiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~~~ 180 (566)
|+||||++.+.. ||||++|++|++++.|+++++.+.
T Consensus 530 i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~el~~~ 565 (578)
T 4a82_A 530 LIVAHRLSTITH-ADKIVVIENGHIVETGTHRELIAK 565 (578)
T ss_dssp EEECSSGGGTTT-CSEEEEEETTEEEEEECHHHHHHT
T ss_pred EEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999865 999999999999999999998654
No 110
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.96 E-value=2.3e-28 Score=255.66 Aligned_cols=85 Identities=20% Similarity=0.346 Sum_probs=79.9
Q ss_pred ccCcCcCChhHHHHHHHHHHHc------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCC
Q psy7366 472 DREVRTLSGGNKRKLSTAIALL------GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCT 545 (566)
Q Consensus 472 ~~~~~~LSgGqkqrv~la~al~------~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~d 545 (566)
++++.+|||||||||+||+||+ .+|++|||||||+|||+.++..++++|+++.++|.|||+||||+++ ...||
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d 352 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFD 352 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCS
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCC
Confidence 5789999999999999999999 7999999999999999999999999999998889999999999998 56799
Q ss_pred EEEEEECCEEEE
Q psy7366 546 KLTIMVNGQFTC 557 (566)
Q Consensus 546 rv~~l~~G~i~~ 557 (566)
++++|++|++++
T Consensus 353 ~~~~l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLRITGGVVVN 364 (365)
T ss_dssp CEEEEETTEEC-
T ss_pred EEEEEECCEEEe
Confidence 999999999875
No 111
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.95 E-value=8.1e-32 Score=259.64 Aligned_cols=155 Identities=14% Similarity=0.133 Sum_probs=105.5
Q ss_pred CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHH
Q psy7366 358 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPR 437 (566)
Q Consensus 358 ~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~ 437 (566)
++.+|+++ ++||+++|+||||||||||+++|+|+ +|++|+|.. .++.......++.+||+||++ .
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~--~~~~~~~~~~~~~ig~v~q~~--------~ 76 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR--IILTRPAVEAGEKLGFLPGTL--------N 76 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE--EEEEECSCCTTCCCCSSCC-----------
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee--EEecCCchhhhcceEEecCCH--------H
Confidence 45688885 89999999999999999999999999 999999943 222111112456799999986 3
Q ss_pred HHH-HHH----HHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHH
Q psy7366 438 EHL-EFY----SRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGA 512 (566)
Q Consensus 438 e~l-~~~----~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~ 512 (566)
||+ .+. ........ ...+.++++. ++ ||||||+|||||+.+|++|||||||+| +
T Consensus 77 enl~~~~~~~~~~~~~~~~---~~~~~~~l~~-gl-------------Gq~qrv~lAraL~~~p~lllLDEPts~----~ 135 (208)
T 3b85_A 77 EKIDPYLRPLHDALRDMVE---PEVIPKLMEA-GI-------------VEVAPLAYMRGRTLNDAFVILDEAQNT----T 135 (208)
T ss_dssp ---CTTTHHHHHHHTTTSC---TTHHHHHHHT-TS-------------EEEEEGGGGTTCCBCSEEEEECSGGGC----C
T ss_pred HHHHHHHHHHHHHHHHhcc---HHHHHHHHHh-CC-------------chHHHHHHHHHHhcCCCEEEEeCCccc----c
Confidence 333 221 11111111 1235566654 33 999999999999999999999999999 8
Q ss_pred HHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCE
Q psy7366 513 RRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554 (566)
Q Consensus 513 ~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~ 554 (566)
+..++++|+++ ++|.||| +|||++++.. ....++|.
T Consensus 136 ~~~l~~~l~~l-~~g~tii-vtHd~~~~~~----~~~~~~G~ 171 (208)
T 3b85_A 136 PAQMKMFLTRL-GFGSKMV-VTGDITQVDL----PGGQKSGL 171 (208)
T ss_dssp HHHHHHHHTTB-CTTCEEE-EEEC----------------CC
T ss_pred HHHHHHHHHHh-cCCCEEE-EECCHHHHhC----cCCCCCcH
Confidence 99999999988 6689999 9999987654 34456664
No 112
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.94 E-value=2.7e-27 Score=243.71 Aligned_cols=84 Identities=25% Similarity=0.287 Sum_probs=74.4
Q ss_pred ccccCcCcCChhHHHHHHHHHHHc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCC
Q psy7366 470 YSDREVRTLSGGNKRKLSTAIALL----GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCT 545 (566)
Q Consensus 470 ~~~~~~~~LSgGqkqrv~la~al~----~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~d 545 (566)
..++++.+||+|||||++||++|+ .+|++|||||||++||+..+..+.++|+++. +|.+||++||+. ++..+||
T Consensus 212 ~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~-~~~~~~d 289 (322)
T 1e69_A 212 RRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNK-IVMEAAD 289 (322)
T ss_dssp SCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCT-TGGGGCS
T ss_pred cccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCH-HHHhhCc
Confidence 356788999999999999999997 6899999999999999999999999999984 588999999996 4567899
Q ss_pred EE--EEEECCEE
Q psy7366 546 KL--TIMVNGQF 555 (566)
Q Consensus 546 rv--~~l~~G~i 555 (566)
++ ++|.+|..
T Consensus 290 ~~~~v~~~~g~s 301 (322)
T 1e69_A 290 LLHGVTMVNGVS 301 (322)
T ss_dssp EEEEEEESSSCE
T ss_pred eEEEEEEeCCEE
Confidence 87 78888764
No 113
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.94 E-value=4.9e-28 Score=226.31 Aligned_cols=147 Identities=16% Similarity=0.105 Sum_probs=105.5
Q ss_pred eeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCC-CCCCCHHHHHHH
Q psy7366 364 QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDAL-NDRLTPREHLEF 442 (566)
Q Consensus 364 ~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l-~~~~tv~e~l~~ 442 (566)
|+||+|++||+++|+||||||||||+|++.+ |...+.+ ..+ .++++|++.- ...-++.+++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~~~-------d~~---~g~~~~~~~~~~~~~~~~~~~~- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVISS-------DFC---RGLMSDDENDQTVTGAAFDVLH- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEEEH-------HHH---HHHHCSSTTCGGGHHHHHHHHH-
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEEcc-------HHH---HHHhcCcccchhhHHHHHHHHH-
Confidence 6899999999999999999999999999653 2222221 111 2567776531 10001112111
Q ss_pred HHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH-----------
Q psy7366 443 YSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG----------- 511 (566)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~----------- 511 (566)
... ......+.....+ .....|+|||||++||||++.+|++|+|||||++||+.
T Consensus 64 -------------~~~-~~~~~~g~~~~~~-~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~ 128 (171)
T 4gp7_A 64 -------------YIV-SKRLQLGKLTVVD-ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEE 128 (171)
T ss_dssp -------------HHH-HHHHHTTCCEEEE-SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCH
T ss_pred -------------HHH-HHHHhCCCeEEEE-CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCH
Confidence 111 1122334443333 33456999999999999999999999999999999999
Q ss_pred -----HHHHHHHHHHHHHhCCcEEEEEccCHHHHHh
Q psy7366 512 -----ARRFLWTCIERAVSEGRCVILTSHNMEECEA 542 (566)
Q Consensus 512 -----~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~ 542 (566)
.+..+++.|++++++|.|+|++|||++++..
T Consensus 129 ~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~ 164 (171)
T 4gp7_A 129 YVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEE 164 (171)
T ss_dssp HHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHH
T ss_pred HHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhh
Confidence 6688999998887779999999999999876
No 114
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.93 E-value=2.7e-29 Score=264.80 Aligned_cols=170 Identities=17% Similarity=0.124 Sum_probs=140.5
Q ss_pred cceeeeeeEEEeCCc--------------------EEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhc
Q psy7366 359 KPAVNQISFGVGRGE--------------------CFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 418 (566)
Q Consensus 359 ~~~l~~isl~i~~Ge--------------------~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~ 418 (566)
+.+|+++||+|++|+ ++||+||||||||||+|+|+|+++|++|+|.++|.+++ +
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------~ 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------M 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----------C
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc------e
Confidence 468999999999999 99999999999999999999999999999999987653 1
Q ss_pred CceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChh--HHHHHHHHHHHcC--
Q psy7366 419 SYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGG--NKRKLSTAIALLG-- 494 (566)
Q Consensus 419 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG--qkqrv~la~al~~-- 494 (566)
.+|++|++ .++.+|+.||+.+.. . ...+.++++.+++.+. +..+. ||+| |+||+.||++|+.
T Consensus 110 --~~~v~q~~-~~~~ltv~D~~g~~~-----~----~~~~~~~L~~~~L~~~-~~~~~-lS~G~~~kqrv~la~aL~~~~ 175 (413)
T 1tq4_A 110 --ERHPYKHP-NIPNVVFWDLPGIGS-----T----NFPPDTYLEKMKFYEY-DFFII-ISATRFKKNDIDIAKAISMMK 175 (413)
T ss_dssp --CCEEEECS-SCTTEEEEECCCGGG-----S----SCCHHHHHHHTTGGGC-SEEEE-EESSCCCHHHHHHHHHHHHTT
T ss_pred --eEEecccc-ccCCeeehHhhcccc-----h----HHHHHHHHHHcCCCcc-CCeEE-eCCCCccHHHHHHHHHHHhcC
Confidence 27899985 467788888764431 1 1236788999998754 33444 9999 9999999999999
Q ss_pred --------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----hCC----cEEEEEccCHHH--HHhhCCEEE
Q psy7366 495 --------NPPLIFLDEPTSGMDPGARRFLWTCIERAV-----SEG----RCVILTSHNMEE--CEALCTKLT 548 (566)
Q Consensus 495 --------~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-----~~g----~tvl~vsHd~~~--~~~~~drv~ 548 (566)
+|++++|||||+|||+.++..+++.|+++. +.| .+|+++||+++. +..+||++.
T Consensus 176 ~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 176 KEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp CEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred CCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 999999999999999999999999999884 332 678899999987 888898874
No 115
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.93 E-value=5.8e-30 Score=246.85 Aligned_cols=178 Identities=13% Similarity=0.044 Sum_probs=124.3
Q ss_pred CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHH
Q psy7366 358 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPR 437 (566)
Q Consensus 358 ~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~ 437 (566)
..++++| .+|++|++++|+||||||||||+|+|+|+++...+.+.+.+.+. ....++.++|+||++.+|+.+|+.
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~---~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAP---RPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCC---CTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCC---cccccCCCeeEecCHHHHHHHHhc
Confidence 3457787 79999999999999999999999999999963333222222111 112346799999998777777776
Q ss_pred HHHHHH----H--HhcCCCchHHHHHHHHH------HHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCC
Q psy7366 438 EHLEFY----S--RVRNVPSVLLNTIVNES------LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPT 505 (566)
Q Consensus 438 e~l~~~----~--~~~~~~~~~~~~~~~~~------l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt 505 (566)
+++... . ..++.+....++++.+. ++.+++....++++.+|| +|+.+|++++|||||
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS-----------~l~~~p~~~~LDep~ 151 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT-----------VFLAPPSWQDLQARL 151 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE-----------EEEECSCHHHHHHHH
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE-----------EEEECCCHHHHHHHH
Confidence 665321 1 12233333344445554 555666566677888888 899999999999999
Q ss_pred CCC----CHHHHHHHHHHHHHHHh-CCcEEEEEccCHHHHHhhCCEEEEEE
Q psy7366 506 SGM----DPGARRFLWTCIERAVS-EGRCVILTSHNMEECEALCTKLTIMV 551 (566)
Q Consensus 506 ~gL----D~~~~~~l~~~l~~~~~-~g~tvl~vsHd~~~~~~~~drv~~l~ 551 (566)
+++ |+..+..++++++++.+ .|.|+|++|||++++..+|||+++|.
T Consensus 152 ~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 152 IGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred HhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 998 78899999999999975 48999999999999999999999984
No 116
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.93 E-value=3.6e-27 Score=221.81 Aligned_cols=147 Identities=11% Similarity=0.036 Sum_probs=108.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCch-HHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCch
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM-DLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSV 452 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~ 452 (566)
+++|+||||||||||+++|+|++. |.++|.+..... ...++++||++|++. +.+++ + ... ..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~~------~~~~~-~-~~~-~~--- 64 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITTE------GKKKI-F-SSK-FF--- 64 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEETT------CCEEE-E-EET-TC---
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecCc------HHHHH-H-Hhh-cC---
Confidence 689999999999999999999985 445554432111 134567999999862 22222 0 000 00
Q ss_pred HHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHH-----HcCCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHHh
Q psy7366 453 LLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIA-----LLGNPPLIFLDE--PTSGMDPGARRFLWTCIERAVS 525 (566)
Q Consensus 453 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~a-----l~~~p~lllLDE--Pt~gLD~~~~~~l~~~l~~~~~ 525 (566)
.-....++++.+||||||||++||+| ++.+|++||||| ||++||+..++.+.+.+++
T Consensus 65 -------------~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~--- 128 (178)
T 1ye8_A 65 -------------TSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--- 128 (178)
T ss_dssp -------------CCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC---
T ss_pred -------------CccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc---
Confidence 00135678899999999999999996 999999999999 9999999999999888765
Q ss_pred CCcEEEEEc---cCHHHHHhhCCEEEEEECCEEEE
Q psy7366 526 EGRCVILTS---HNMEECEALCTKLTIMVNGQFTC 557 (566)
Q Consensus 526 ~g~tvl~vs---Hd~~~~~~~~drv~~l~~G~i~~ 557 (566)
.+.|+|++| ||.+++..+|+| .+|++.+
T Consensus 129 ~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 129 PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 367788888 599999999998 3455544
No 117
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.92 E-value=4.1e-27 Score=239.53 Aligned_cols=175 Identities=14% Similarity=0.136 Sum_probs=143.7
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCch-----HHh--cCceEEEecCCC-CCCC
Q psy7366 362 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM-----DLV--RSYIGYCPQFDA-LNDR 433 (566)
Q Consensus 362 l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-----~~~--~~~i~~v~q~~~-l~~~ 433 (566)
++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++.... ..+ +.+++|++|++. +++.
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 45789999999999999999999999999999999999999999999886531 122 457999999988 8888
Q ss_pred CCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCC--EEEEeCCCCCCCHH
Q psy7366 434 LTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP--LIFLDEPTSGMDPG 511 (566)
Q Consensus 434 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~--lllLDEPt~gLD~~ 511 (566)
+|++||+.+... .+.. ..+++.+|+.+..++++.+|| |||++||||++.+|+ +|+|| ||+|||+.
T Consensus 170 ~~v~e~l~~~~~-~~~d--------~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~ 236 (302)
T 3b9q_A 170 TVLSKAVKRGKE-EGYD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNML 236 (302)
T ss_dssp HHHHHHHHHHHH-TTCS--------EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGH
T ss_pred HHHHHHHHHHHH-cCCc--------chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHH
Confidence 999999987532 1111 134667788777788899999 999999999999999 99999 99999998
Q ss_pred HHHHHHHHHHHHHh-CCcEEEEEcc---------CHHHHHhhCCEEEEEECCEE
Q psy7366 512 ARRFLWTCIERAVS-EGRCVILTSH---------NMEECEALCTKLTIMVNGQF 555 (566)
Q Consensus 512 ~~~~l~~~l~~~~~-~g~tvl~vsH---------d~~~~~~~~drv~~l~~G~i 555 (566)
.+ ++++.+ .|.|+|++|| .++.+...++.|.++..|+.
T Consensus 237 ~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 237 PQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp HH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred HH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 65 244543 4899999999 66777788899999999974
No 118
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.91 E-value=6.9e-26 Score=234.79 Aligned_cols=174 Identities=14% Similarity=0.142 Sum_probs=144.2
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCch-----HH--hcCceEEEecCCC-CCCCC
Q psy7366 363 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM-----DL--VRSYIGYCPQFDA-LNDRL 434 (566)
Q Consensus 363 ~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-----~~--~~~~i~~v~q~~~-l~~~~ 434 (566)
.++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++.... .. .+.+++|++|++. +++..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 4688999999999999999999999999999999999999999999886521 11 2457999999988 88888
Q ss_pred CHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCC--EEEEeCCCCCCCHHH
Q psy7366 435 TPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP--LIFLDEPTSGMDPGA 512 (566)
Q Consensus 435 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~--lllLDEPt~gLD~~~ 512 (566)
++++|+.+... .+.. ..+++.+|+.+..++++.+|| |||++|||+++.+|+ +|+|| ||+|||+.+
T Consensus 228 tv~e~l~~~~~-~~~d--------~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~ 294 (359)
T 2og2_A 228 VLSKAVKRGKE-EGYD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLP 294 (359)
T ss_dssp HHHHHHHHHHH-TTCS--------EEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHH
T ss_pred hHHHHHHHHHh-CCCH--------HHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHH
Confidence 99999987542 1111 134567788777788899999 999999999999999 99999 999999986
Q ss_pred HHHHHHHHHHHHh-CCcEEEEEcc---------CHHHHHhhCCEEEEEECCEE
Q psy7366 513 RRFLWTCIERAVS-EGRCVILTSH---------NMEECEALCTKLTIMVNGQF 555 (566)
Q Consensus 513 ~~~l~~~l~~~~~-~g~tvl~vsH---------d~~~~~~~~drv~~l~~G~i 555 (566)
+. +++.+ .|.|+|++|| .+..+...+..|.++..|+.
T Consensus 295 ~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 295 QA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp HH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred HH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 53 34443 4899999999 46677778899999999974
No 119
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.91 E-value=4.5e-24 Score=242.34 Aligned_cols=127 Identities=24% Similarity=0.392 Sum_probs=110.5
Q ss_pred CCCHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCCCc-ccccccccCChhHHHHHHHHHHHhCCC---CEEEeeCCCCCC
Q psy7366 46 RLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTAIALLGNP---PLIFLDEPTSGM 121 (566)
Q Consensus 46 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG~kqrl~iA~al~~~p---~vLlLDEPt~~L 121 (566)
.+||.|++.|+.. . .. ..++.++++.+||.. .+++++.+|||||||||+||++|+.+| +||||||||+||
T Consensus 806 ~ltv~e~l~~~~~---~--~~-~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGL 879 (972)
T 2r6f_A 806 DMTVEDALDFFAS---I--PK-IKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGL 879 (972)
T ss_dssp TSBHHHHHHHTCS---C--HH-HHHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTC
T ss_pred hcCHHHHHHHHhc---c--hh-HHHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCC
Confidence 3577777776432 1 11 234578999999987 789999999999999999999999865 999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhcCEEEEE------eCCEEEEecChhHHHh
Q psy7366 122 DPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIM------VNGQFTCLGSATHLKS 179 (566)
Q Consensus 122 D~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~d~i~vl------~~G~i~~~g~~~~~~~ 179 (566)
|+.+++.|+++|++++++|.|||+||||++++ ..||||++| ++|+++..|+++++..
T Consensus 880 D~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i-~~aDrIivL~p~gG~~~G~Iv~~g~~~el~~ 942 (972)
T 2r6f_A 880 HVDDIARLLDVLHRLVDNGDTVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVAE 942 (972)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEECSSSTTSCCSEEEEESHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEEcCCCCCCCCEEEEecCHHHHHh
Confidence 99999999999999988899999999999997 579999999 7899999999998754
No 120
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.91 E-value=9.1e-24 Score=241.50 Aligned_cols=127 Identities=26% Similarity=0.386 Sum_probs=111.9
Q ss_pred CCHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCCCc-ccccccccCChhHHHHHHHHHHHhCCC---CEEEeeCCCCCCC
Q psy7366 47 LTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTAIALLGNP---PLIFLDEPTSGMD 122 (566)
Q Consensus 47 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG~kqrl~iA~al~~~p---~vLlLDEPt~~LD 122 (566)
+||.|++.|+... ....++.++|+.+||.. .+++++.+|||||||||+||+||+.+| +||||||||+|||
T Consensus 767 ~tv~eal~f~~~~------~~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD 840 (916)
T 3pih_A 767 MTVDEALEFFKNI------PSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLH 840 (916)
T ss_dssp SBHHHHHHHTTTC------HHHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCC
T ss_pred CCHHHHHHHHhcc------hhHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCC
Confidence 6788888775321 12356778999999986 468999999999999999999999875 7999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhcCEEEEE------eCCEEEEecChhHHHhh
Q psy7366 123 PGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIM------VNGQFTCLGSATHLKSK 180 (566)
Q Consensus 123 ~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~d~i~vl------~~G~i~~~g~~~~~~~~ 180 (566)
+.+++.|+++|++++++|.|||+||||++++.. ||+|++| ++|+|++.|+++++...
T Consensus 841 ~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~-ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~ 903 (916)
T 3pih_A 841 FEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKN-ADHIIDLGPEGGKEGGYIVATGTPEEIAKN 903 (916)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT-CSEEEEEESSSGGGCCEEEEEESHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh-CCEEEEecCCCCCCCCEEEEEcCHHHHHhC
Confidence 999999999999998889999999999999865 9999999 89999999999998653
No 121
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.90 E-value=1.5e-27 Score=254.33 Aligned_cols=194 Identities=16% Similarity=0.192 Sum_probs=156.4
Q ss_pred CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCc---cCCCc----
Q psy7366 341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH---SIRDS---- 413 (566)
Q Consensus 341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~---~~~~~---- 413 (566)
.+++++++++.|+. +..+|+++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.++|+ ++...
T Consensus 130 ~~l~~~~v~~~~~t---g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~ 205 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT---GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENI 205 (438)
T ss_dssp CTTTSCCCCSBCCC---SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTT
T ss_pred CceEEeccceecCC---CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhh
Confidence 45788999998852 35699999 999999999999999999999999999999999999999998 44321
Q ss_pred --hHHhcCceEEEecC-CCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHH
Q psy7366 414 --MDLVRSYIGYCPQF-DALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAI 490 (566)
Q Consensus 414 --~~~~~~~i~~v~q~-~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~ 490 (566)
...+++.++|++|+ ..+++.+++.+|+.+......... -...... ..+..||+|| |||+||
T Consensus 206 ~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~-------------~~v~~~l-d~l~~lS~g~-qrvslA- 269 (438)
T 2dpy_A 206 LGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRG-------------QHVLLIM-DSLTRYAMAQ-REIALA- 269 (438)
T ss_dssp THHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTT-------------CEEEEEE-ECHHHHHHHH-HHHHHH-
T ss_pred ccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCC-------------CCHHHHH-HhHHHHHHHH-HHHHHH-
Confidence 23456789999995 556677889998876543221000 0011112 2378899999 999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---C-Cc-----EEEEEccCHHHHHhhCCEEEEEECCEEEEecCc
Q psy7366 491 ALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS---E-GR-----CVILTSHNMEECEALCTKLTIMVNGQFTCLGSA 561 (566)
Q Consensus 491 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~---~-g~-----tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~ 561 (566)
+.+|++ |+|||+..+..+.+++.++.+ + |. ||+++|||++ ..+||++++|.+|+++.++++
T Consensus 270 --l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~dG~Ivl~~~~ 339 (438)
T 2dpy_A 270 --IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAILDGHIVLSRRL 339 (438)
T ss_dssp --TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSSEEEEECHHH
T ss_pred --hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEeCcEEEEeCCH
Confidence 888888 999999999999999999866 3 64 9999999998 678999999999999999987
Q ss_pred ccc
Q psy7366 562 THL 564 (566)
Q Consensus 562 ~~l 564 (566)
.++
T Consensus 340 ~~~ 342 (438)
T 2dpy_A 340 AEA 342 (438)
T ss_dssp HHT
T ss_pred HHc
Confidence 665
No 122
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.90 E-value=6.7e-29 Score=251.65 Aligned_cols=162 Identities=14% Similarity=0.151 Sum_probs=126.2
Q ss_pred EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceE
Q psy7366 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIG 422 (566)
Q Consensus 343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~ 422 (566)
|+++|+++.|+ .++|+++||+|++|++++|+||||||||||+++|+|++ +|+|. +
T Consensus 102 i~~~~vs~~y~-----~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~-----------------~ 156 (305)
T 2v9p_A 102 FNYQNIELITF-----INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVL-----------------S 156 (305)
T ss_dssp HHHTTCCHHHH-----HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEE-----------------C
T ss_pred EEEEEEEEEcC-----hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEE-----------------E
Confidence 67789998884 46899999999999999999999999999999999999 79883 4
Q ss_pred EEecCCCCCCCCCHHH-HHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEE
Q psy7366 423 YCPQFDALNDRLTPRE-HLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFL 501 (566)
Q Consensus 423 ~v~q~~~l~~~~tv~e-~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllL 501 (566)
|++|++.+|.. |+++ |+.+... .. ..+.+.++.+ +...++ ...|||||||| ||||+.+|+|||
T Consensus 157 ~v~q~~~lf~~-ti~~~ni~~~~~---~~-----~~~~~~i~~~-L~~gld--g~~LSgGqkQR---ARAll~~p~iLl- 220 (305)
T 2v9p_A 157 FANHKSHFWLA-SLADTRAALVDD---AT-----HACWRYFDTY-LRNALD--GYPVSIDRKHK---AAVQIKAPPLLV- 220 (305)
T ss_dssp GGGTTSGGGGG-GGTTCSCEEEEE---EC-----HHHHHHHHHT-TTGGGG--TCCEECCCSSC---CCCEECCCCEEE-
T ss_pred EecCccccccc-cHHHHhhccCcc---cc-----HHHHHHHHHH-hHccCC--ccCcCHHHHHH---HHHHhCCCCEEE-
Confidence 56777766653 6665 6654210 11 1234555554 444444 78999999999 999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366 502 DEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564 (566)
Q Consensus 502 DEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l 564 (566)
|++||+.+...+.. +||+++.+ ..||+| +|++|++++.|+++++
T Consensus 221 ---Ts~LD~~~~~~i~~--------------ltH~~~~~-~~aD~i-vl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 221 ---TSNIDVQAEDRYLY--------------LHSRVQTF-RFEQPC-TDESGEQPFNITDADW 264 (305)
T ss_dssp ---EESSCSTTCGGGGG--------------GTTTEEEE-ECCCCC-CCC---CCCCCCHHHH
T ss_pred ---ECCCCHHHHHHHHH--------------HhCCHHHH-HhCCEE-EEeCCEEEEeCCHHHH
Confidence 99999999888752 19998765 579999 9999999999988765
No 123
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.90 E-value=1.5e-23 Score=239.01 Aligned_cols=126 Identities=24% Similarity=0.340 Sum_probs=109.8
Q ss_pred CCHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCCCc-ccccccccCChhHHHHHHHHHHHhCCC---CEEEeeCCCCCCC
Q psy7366 47 LTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTAIALLGNP---PLIFLDEPTSGMD 122 (566)
Q Consensus 47 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG~kqrl~iA~al~~~p---~vLlLDEPt~~LD 122 (566)
+||.|++.|+.. . .. ..++.++++.+||.. .+++++.+|||||||||+||++|+.+| +||||||||+|||
T Consensus 825 ltv~e~l~~~~~---~--~~-~~~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD 898 (993)
T 2ygr_A 825 MSIEEAAEFFEP---I--AG-VHRYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLH 898 (993)
T ss_dssp SBHHHHHHHSTT---C--HH-HHHHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCC
T ss_pred ccHHHHHHHhhc---c--hH-HHHHHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCC
Confidence 567777766432 1 11 234578999999987 689999999999999999999999865 9999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhcCEEEEE------eCCEEEEecChhHHHh
Q psy7366 123 PGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIM------VNGQFTCLGSATHLKS 179 (566)
Q Consensus 123 ~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~d~i~vl------~~G~i~~~g~~~~~~~ 179 (566)
+.+++.|+++|++++++|.|||+||||++++ ..||||++| ++|++++.|+++++..
T Consensus 899 ~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i-~~aDrIivL~p~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 899 FDDIRKLLNVINGLVDKGNTVIVIEHNLDVI-KTSDWIIDLGPEGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEEESSSTTSCSEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEECCCcCCCCCEEEEecCHHHHHh
Confidence 9999999999999988899999999999998 579999999 7899999999998764
No 124
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.89 E-value=6.9e-23 Score=232.43 Aligned_cols=110 Identities=24% Similarity=0.356 Sum_probs=103.1
Q ss_pred HHHHHHHHHcCCCc-ccccccccCChhHHHHHHHHHHHhCC---CCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q psy7366 69 TIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTAIALLGN---PPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 144 (566)
Q Consensus 69 ~~~~~~l~~~gl~~-~~~~~~~~LSgG~kqrl~iA~al~~~---p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi 144 (566)
+++.++++.+||.. .+++++.+|||||||||+||++|+.+ |+||||||||+|||+..++.++++|++++++|.|||
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVI 787 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVI 787 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 46789999999987 46999999999999999999999996 799999999999999999999999999988899999
Q ss_pred EecCChhHHHhhcCEEEEE------eCCEEEEecChhHHHh
Q psy7366 145 LTSHNMEECEALCTKLTIM------VNGQFTCLGSATHLKS 179 (566)
Q Consensus 145 iisH~~~~~~~~~d~i~vl------~~G~i~~~g~~~~~~~ 179 (566)
+||||++++ ..||||++| ++|++++.|+++++..
T Consensus 788 visHdl~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~~ 827 (842)
T 2vf7_A 788 AVEHKMQVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVAQ 827 (842)
T ss_dssp EECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHTT
T ss_pred EEcCCHHHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHHh
Confidence 999999999 789999999 7999999999998754
No 125
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.88 E-value=2.6e-27 Score=230.28 Aligned_cols=179 Identities=11% Similarity=0.057 Sum_probs=120.9
Q ss_pred cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc--hHHhcCceEEEecCCCCCCCCCH
Q psy7366 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS--MDLVRSYIGYCPQFDALNDRLTP 436 (566)
Q Consensus 359 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~--~~~~~~~i~~v~q~~~l~~~~tv 436 (566)
...|+|+||+|++|++++|+||||||||||+++|+|++ | |+|.+ |.++... ....+..++|+||++.+|+.++.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 85 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLK 85 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhh
Confidence 45799999999999999999999999999999999999 5 99999 7765321 11234679999998765543321
Q ss_pred -HHHHH---HHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHH-----HHHHcCCCCEEEEeCCCCC
Q psy7366 437 -REHLE---FYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLST-----AIALLGNPPLIFLDEPTSG 507 (566)
Q Consensus 437 -~e~l~---~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~l-----a~al~~~p~lllLDEPt~g 507 (566)
.+++. +....++.+ ...+.++++...+. ..+ .+|||||+||++| +++++.+|++++|||||++
T Consensus 86 ~~~~l~~~~~~~~~~g~~----~~~i~~~l~~~~~~-il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~ 157 (218)
T 1z6g_A 86 NEDFLEYDNYANNFYGTL----KSEYDKAKEQNKIC-LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLT 157 (218)
T ss_dssp TTCEEEEEEETTEEEEEE----HHHHHHHHHTTCEE-EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHH
T ss_pred ccchhhhhhcccccCCCc----HHHHHHHHhCCCcE-EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHh
Confidence 11111 011111211 22355666653321 112 5799999999999 8999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh-------CCcEEEEEccCHHHHHhhCCEEEE
Q psy7366 508 MDPGARRFLWTCIERAVS-------EGRCVILTSHNMEECEALCTKLTI 549 (566)
Q Consensus 508 LD~~~~~~l~~~l~~~~~-------~g~tvl~vsHd~~~~~~~~drv~~ 549 (566)
+|..+...+.+.+.++.+ .....|+++||++++...+++++.
T Consensus 158 ~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii~ 206 (218)
T 1z6g_A 158 RNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYLL 206 (218)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHHH
Confidence 999988888888876532 457889999999999888777653
No 126
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.88 E-value=5.1e-26 Score=249.32 Aligned_cols=181 Identities=18% Similarity=0.168 Sum_probs=133.7
Q ss_pred eEEEeeeEEEeCCcCCCcceeeeeeE-EEeCCcEEEEEcCCCCcHHHHHHH--HHCCCCCCccEEEEcCccCCCchHHhc
Q psy7366 342 VLVVKRLFKIYANSKGTKPAVNQISF-GVGRGECFGLLGLNGAGKTTTFKM--LTGAIKPTSGNAYVMNHSIRDSMDLVR 418 (566)
Q Consensus 342 ~l~~~~l~~~y~~~~~~~~~l~~isl-~i~~Ge~~~l~G~NGsGKSTLl~~--i~G~~~~~~G~i~~~g~~~~~~~~~~~ 418 (566)
+++.+++.+..+ +.++|++++| .|++|++++|+||||||||||+++ ++|+++|++|.|+++|++........+
T Consensus 12 ~~~~~~~~~~~~----g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~ 87 (525)
T 1tf7_A 12 NSEHQAIAKMRT----MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNA 87 (525)
T ss_dssp --CCSSCCEECC----CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHH
T ss_pred CccccccccccC----CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHH
Confidence 345555655443 5679999999 999999999999999999999999 789999999999999988432233445
Q ss_pred CceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCE
Q psy7366 419 SYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPL 498 (566)
Q Consensus 419 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~l 498 (566)
+.+||++|++.... |+.+. .... .. ...++++.+++.+..++.+.+||+|| |++
T Consensus 88 ~~~g~~~q~~~~~~------~l~~~-~~~~-~~-----~~~~~l~~~~l~~~~~~~~~~LS~g~-------------~~~ 141 (525)
T 1tf7_A 88 RSFGWDLAKLVDEG------KLFIL-DASP-DP-----EGQEVVGGFDLSALIERINYAIQKYR-------------ARR 141 (525)
T ss_dssp GGGTCCHHHHHHTT------SEEEE-ECCC-CS-----SCCSCCSSHHHHHHHHHHHHHHHHHT-------------CSE
T ss_pred HHcCCChHHhhccC------cEEEE-ecCc-cc-----chhhhhcccCHHHHHHHHHHHHHHcC-------------CCE
Confidence 67999999753211 11000 0000 00 01123334444445566777777775 789
Q ss_pred EEEeCCCC-----CCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHH---------HhhCCEEEEEEC
Q psy7366 499 IFLDEPTS-----GMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC---------EALCTKLTIMVN 552 (566)
Q Consensus 499 llLDEPt~-----gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~---------~~~~drv~~l~~ 552 (566)
++|||||+ +||+..++.++++++.+++.|+|||++||+++++ ..+||+|++|++
T Consensus 142 lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 142 VSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp EEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred EEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 99999998 4699999999999999987899999999999984 566999999998
No 127
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.88 E-value=4.2e-26 Score=233.12 Aligned_cols=180 Identities=11% Similarity=0.085 Sum_probs=135.7
Q ss_pred CCeEEEeeeEEEeCCcCCCcceeeeeeEE-----------------------EeCCcEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366 340 GDVLVVKRLFKIYANSKGTKPAVNQISFG-----------------------VGRGECFGLLGLNGAGKTTTFKMLTGAI 396 (566)
Q Consensus 340 ~~~l~~~~l~~~y~~~~~~~~~l~~isl~-----------------------i~~Ge~~~l~G~NGsGKSTLl~~i~G~~ 396 (566)
++.|++++|++.|. ++++++++. +++|+++||+||||||||||+++|+|++
T Consensus 41 ~~~i~~~~v~~~y~------p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 41 GEQIDLLEVEEVYL------PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp TCCCCHHHHHHTHH------HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEeeehhhhhh------hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 45688999999884 466666654 8999999999999999999999999999
Q ss_pred CCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcC
Q psy7366 397 KPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVR 476 (566)
Q Consensus 397 ~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 476 (566)
+|+.|. .+++|++|++.+++. |+.||+.+.. .++.+.....+.+.+.++.++ ....+.++.
T Consensus 115 ~~~~G~----------------~~v~~v~qd~~~~~~-t~~e~~~~~~-~~g~~~~~d~~~~~~~L~~l~-~~~~~~~~~ 175 (312)
T 3aez_A 115 ARWDHH----------------PRVDLVTTDGFLYPN-AELQRRNLMH-RKGFPESYNRRALMRFVTSVK-SGSDYACAP 175 (312)
T ss_dssp HTSTTC----------------CCEEEEEGGGGBCCH-HHHHHTTCTT-CTTSGGGBCHHHHHHHHHHHH-TTCSCEEEE
T ss_pred cccCCC----------------CeEEEEecCccCCcc-cHHHHHHHHH-hcCCChHHHHHHHHHHHHHhC-CCcccCCcc
Confidence 997663 259999999888887 9999986532 123344344556778888888 555567889
Q ss_pred cCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHH-HhhCCEEEEEEC
Q psy7366 477 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC-EALCTKLTIMVN 552 (566)
Q Consensus 477 ~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~-~~~~drv~~l~~ 552 (566)
+|||||+||+++|++++.+|+|||||||+..+|+.. ..+.+.=-.+|+++|+.+.. ..+++|.+.+.+
T Consensus 176 ~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~--------~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd 244 (312)
T 3aez_A 176 VYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT--------LMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRT 244 (312)
T ss_dssp EEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS--------CCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred cCChhhhhhhhhHHHhccCCCEEEECCccccCCcch--------HHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998521 01222212457778887664 334455444444
No 128
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.88 E-value=1e-23 Score=244.96 Aligned_cols=167 Identities=17% Similarity=0.224 Sum_probs=126.6
Q ss_pred CeEEEee-----eEEEeCCcCCCcceeeeeeEEEeC-------CcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCc
Q psy7366 341 DVLVVKR-----LFKIYANSKGTKPAVNQISFGVGR-------GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 408 (566)
Q Consensus 341 ~~l~~~~-----l~~~y~~~~~~~~~l~~isl~i~~-------Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~ 408 (566)
.+|++++ |++.|. ++..+++|++|++.+ |++++|+||||||||||||+| |++.+
T Consensus 749 ~~l~i~~~rHP~l~~~~~---~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~---------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFF---GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV---------- 814 (1022)
T ss_dssp CCEEEEEECCCC---------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH----------
T ss_pred ceEEEEeccccEEEEEec---CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH----------
Confidence 4699999 998883 246799999999987 999999999999999999999 98864
Q ss_pred cCCCchHHhcCceE-EEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHH
Q psy7366 409 SIRDSMDLVRSYIG-YCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLS 487 (566)
Q Consensus 409 ~~~~~~~~~~~~i~-~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~ 487 (566)
..++| ||||++. .+++.+++. .++|+.+...+..+++|+++++ ++
T Consensus 815 ---------~aqiG~~Vpq~~~---~l~v~d~I~---------------------~rig~~d~~~~~~stf~~em~~-~a 860 (1022)
T 2o8b_B 815 ---------MAQMGCYVPAEVC---RLTPIDRVF---------------------TRLGASDRIMSGESTFFVELSE-TA 860 (1022)
T ss_dssp ---------HHTTTCCEESSEE---EECCCSBEE---------------------EECC---------CHHHHHHHH-HH
T ss_pred ---------HhheeEEeccCcC---CCCHHHHHH---------------------HHcCCHHHHhhchhhhHHHHHH-HH
Confidence 12456 9999853 345555431 1223333344556788888776 99
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEE
Q psy7366 488 TAIALLGNPPLIFLDEPTSGMDPGAR-RFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFT 556 (566)
Q Consensus 488 la~al~~~p~lllLDEPt~gLD~~~~-~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~ 556 (566)
+|++++.+|+++|||||++|+|+... ..++.+|+.+.++ |.++|++||+.+++..+||++.++ +|++.
T Consensus 861 ~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~ 930 (1022)
T 2o8b_B 861 SILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMA 930 (1022)
T ss_dssp HHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEE
T ss_pred HHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEE
Confidence 99999999999999999999999884 5578999999876 999999999999999999999887 48877
No 129
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.87 E-value=9.5e-25 Score=226.05 Aligned_cols=194 Identities=17% Similarity=0.230 Sum_probs=145.6
Q ss_pred CeEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC--------
Q psy7366 341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-------- 412 (566)
Q Consensus 341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-------- 412 (566)
.+++++++++.|+. +..+++++ |+|.+|+++||+||||||||||+++|+|+.+|+.|.|.+.|++...
T Consensus 44 ~~i~~~~l~~~~~t---g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~ 119 (347)
T 2obl_A 44 DPLLRQVIDQPFIL---GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALL 119 (347)
T ss_dssp CSTTCCCCCSEECC---SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTS
T ss_pred CCeeecccceecCC---CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhh
Confidence 46788999999962 45799999 9999999999999999999999999999999999999999875211
Q ss_pred chHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCC-CccccCcCcCChhHHHHHHHHHH
Q psy7366 413 SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIA 491 (566)
Q Consensus 413 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqrv~la~a 491 (566)
.....++.+.+++|.. .+..+.+...... ..+.+.+...+-. -..-..+..||+|| |||++|
T Consensus 120 ~~~~~~~~v~~~~~~~-----~~~~~r~~~~~~~---------~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la-- 182 (347)
T 2obl_A 120 PQSTLSKCVLVVTTSD-----RPALERMKAAFTA---------TTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA-- 182 (347)
T ss_dssp CHHHHTTEEEEEECTT-----SCHHHHHHHHHHH---------HHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH--
T ss_pred hhhhhhceEEEEECCC-----CCHHHHHHHHHHH---------HHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH--
Confidence 0112445678888753 2333333211100 0011111111100 00115688999999 899999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCc-----EEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366 492 LLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS--EGR-----CVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564 (566)
Q Consensus 492 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~--~g~-----tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l 564 (566)
+.+|++ |+|||+..+..+.++++++.+ .|. ||+++|||++ ..+||++++|.+|+|+.+++++++
T Consensus 183 -l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 183 -SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp -TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred -cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEEEeCCHHHc
Confidence 678877 999999999999999999874 477 8999999998 678999999999999999987765
No 130
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.87 E-value=3.4e-25 Score=221.93 Aligned_cols=148 Identities=14% Similarity=0.154 Sum_probs=99.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchH
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVL 453 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~ 453 (566)
.++|+||||||||||+|+|+|+.+|++|+|.++|+++... ..++.++|++|++.+++.+||.||+.++.......
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~--~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~--- 78 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKT--VEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNEN--- 78 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCC--CSCCEEEESCC----CCEEEEECCCC--CCSBCTT---
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcc--eeeeeeEEEeecCCCcCCceEEechhhhhhcccHH---
Confidence 4789999999999999999999999999999999887432 23467999999999999999999987764332211
Q ss_pred HHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEE
Q psy7366 454 LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILT 533 (566)
Q Consensus 454 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~v 533 (566)
..+.+.+.+. ....+..+.+||||||||+++|||++. +++||||+.|||+... ++++.+.+. .+||++
T Consensus 79 ~~~~i~~~~~----~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~----~~l~~L~~~-~~vI~V 146 (270)
T 3sop_A 79 CWEPIEKYIN----EQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDL----EFMKHLSKV-VNIIPV 146 (270)
T ss_dssp CSHHHHHHHH----HHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHH----HHHHHHHTT-SEEEEE
T ss_pred HHHHHHHHHH----HHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHH----HHHHHHHhc-CcEEEE
Confidence 1122333332 334567788999999999999999875 9999999999999873 455666555 888888
Q ss_pred ccCHH
Q psy7366 534 SHNME 538 (566)
Q Consensus 534 sHd~~ 538 (566)
.|..+
T Consensus 147 i~K~D 151 (270)
T 3sop_A 147 IAKAD 151 (270)
T ss_dssp ETTGG
T ss_pred Eeccc
Confidence 88765
No 131
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.87 E-value=6.3e-22 Score=205.05 Aligned_cols=83 Identities=35% Similarity=0.496 Sum_probs=74.1
Q ss_pred cccCcCcCChhHHH------HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhC
Q psy7366 471 SDREVRTLSGGNKR------KLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALC 544 (566)
Q Consensus 471 ~~~~~~~LSgGqkq------rv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~ 544 (566)
.++++.+||||||| |+++|++|+.+|++|||||||+|||+..+..+.+.|+++.++|.|||++|||.+ +..+|
T Consensus 242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~-~~~~~ 320 (339)
T 3qkt_A 242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAA 320 (339)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGC
T ss_pred CcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH-HHHhC
Confidence 46789999999999 678888889999999999999999999999999999998777899999999954 67889
Q ss_pred CEEEEEE--CCE
Q psy7366 545 TKLTIMV--NGQ 554 (566)
Q Consensus 545 drv~~l~--~G~ 554 (566)
|++++|. +|.
T Consensus 321 d~~~~l~~~~g~ 332 (339)
T 3qkt_A 321 DHVIRISLENGS 332 (339)
T ss_dssp SEEEEEEEETTE
T ss_pred CEEEEEEecCCc
Confidence 9999885 554
No 132
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.87 E-value=4e-24 Score=220.35 Aligned_cols=132 Identities=20% Similarity=0.149 Sum_probs=109.6
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHH
Q psy7366 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHL 440 (566)
Q Consensus 361 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l 440 (566)
+++++||.+++|++++|+||||||||||+++|+|+++|++|.|.++|.+... ....++.++|+++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~-~~~~~~~i~~~~g-------------- 224 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIV-FKHHKNYTQLFFG-------------- 224 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCC-CSSCSSEEEEECB--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccc-cccchhEEEEEeC--------------
Confidence 7899999999999999999999999999999999999999999999865211 1112334554430
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHH
Q psy7366 441 EFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCI 520 (566)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l 520 (566)
|||+||++||+||..+|++|||||||+ .++++.|
T Consensus 225 ---------------------------------------gg~~~r~~la~aL~~~p~ilildE~~~-------~e~~~~l 258 (330)
T 2pt7_A 225 ---------------------------------------GNITSADCLKSCLRMRPDRIILGELRS-------SEAYDFY 258 (330)
T ss_dssp ---------------------------------------TTBCHHHHHHHHTTSCCSEEEECCCCS-------THHHHHH
T ss_pred ---------------------------------------CChhHHHHHHHHhhhCCCEEEEcCCCh-------HHHHHHH
Confidence 899999999999999999999999998 2356777
Q ss_pred HHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCE
Q psy7366 521 ERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554 (566)
Q Consensus 521 ~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~ 554 (566)
+.+...+.|+|+++|+.+ +...|||+++|.+|.
T Consensus 259 ~~~~~g~~tvi~t~H~~~-~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 259 NVLCSGHKGTLTTLHAGS-SEEAFIRLANMSSSN 291 (330)
T ss_dssp HHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHTS
T ss_pred HHHhcCCCEEEEEEcccH-HHHHhhhheehhcCC
Confidence 776543458999999988 777899999998875
No 133
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.87 E-value=5.7e-22 Score=205.75 Aligned_cols=86 Identities=20% Similarity=0.286 Sum_probs=78.6
Q ss_pred ccCcC-cCChhHHHHHHHHHHHc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHH
Q psy7366 472 DREVR-TLSGGNKRKLSTAIALL---------GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECE 541 (566)
Q Consensus 472 ~~~~~-~LSgGqkqrv~la~al~---------~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~ 541 (566)
++++. .||||||||++||++|+ .+|+||||||||++||+..+..+++.|.++. .|+|++||. +.
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~~-- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-AP-- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-CT--
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-cc--
Confidence 45677 89999999999999999 8999999999999999999999999998873 799999995 44
Q ss_pred hhCCEEEEEECCEEEEecCcccc
Q psy7366 542 ALCTKLTIMVNGQFTCLGSATHL 564 (566)
Q Consensus 542 ~~~drv~~l~~G~i~~~g~~~~l 564 (566)
.||++++|++|+++..|+++++
T Consensus 333 -~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 -GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp -TCSEEEEEETTEEEECCCTTTS
T ss_pred -cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999998876
No 134
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.87 E-value=2.8e-23 Score=211.04 Aligned_cols=184 Identities=13% Similarity=0.062 Sum_probs=126.1
Q ss_pred cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCcc-EEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHH
Q psy7366 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG-NAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPR 437 (566)
Q Consensus 359 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~ 437 (566)
..+|+++++.|++|++++|+||||||||||+++|+|...|++| .|.+.+.+.. ...+++++.++++...+ +..
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~--~~~~~~r~~~~~~~~~~----~~~ 95 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEES--VEETAEDLIGLHNRVRL----RQS 95 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSC--HHHHHHHHHHHHTTCCG----GGC
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCC--HHHHHHHHHHHHcCCCh----hhc
Confidence 3579999999999999999999999999999999999999888 7766554432 22233344444443321 222
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhH-HHHHHHHHHHcCCCCEEEEeCCCC---C---CCH
Q psy7366 438 EHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGN-KRKLSTAIALLGNPPLIFLDEPTS---G---MDP 510 (566)
Q Consensus 438 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq-kqrv~la~al~~~p~lllLDEPt~---g---LD~ 510 (566)
+++.... + ......+.+.++++...+ .....+..+|.++ +||+. |+++..+|++||+||||+ + +|.
T Consensus 96 ~~l~~~~-~---~~~~~~~~~~~~l~~~~l--~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~ 168 (296)
T 1cr0_A 96 DSLKREI-I---ENGKFDQWFDELFGNDTF--HLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDE 168 (296)
T ss_dssp HHHHHHH-H---HHTHHHHHHHHHHSSSCE--EEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------
T ss_pred cccccCC-C---CHHHHHHHHHHHhccCCE--EEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCH
Confidence 3333221 1 111222334444433232 1233456789998 66666 999999999999999999 5 565
Q ss_pred -HHHHHHHHHHHHHHhC-CcEEEEEccCH--H--------------------HHHhhCCEEEEEECCEE
Q psy7366 511 -GARRFLWTCIERAVSE-GRCVILTSHNM--E--------------------ECEALCTKLTIMVNGQF 555 (566)
Q Consensus 511 -~~~~~l~~~l~~~~~~-g~tvl~vsHd~--~--------------------~~~~~~drv~~l~~G~i 555 (566)
.....+.+.|++++++ |+|||++||+. + .+..+||+|++|++|+.
T Consensus 169 ~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 169 RKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 6778899999998765 99999999994 5 78889999999998875
No 135
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.86 E-value=3.1e-21 Score=201.62 Aligned_cols=86 Identities=20% Similarity=0.336 Sum_probs=80.5
Q ss_pred cccccccCChhHHHHHHHHHHHh------CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhc
Q psy7366 84 SDREVRTLSGGNKRKLSTAIALL------GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALC 157 (566)
Q Consensus 84 ~~~~~~~LSgG~kqrl~iA~al~------~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~ 157 (566)
.++++.+||||||||++||+||+ .+|++|||||||++||+.+++++.++|+++++.|.|||+||||+++ ...|
T Consensus 273 ~~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~ 351 (365)
T 3qf7_A 273 IERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAF 351 (365)
T ss_dssp EEEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTC
T ss_pred cCCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhC
Confidence 36789999999999999999999 7999999999999999999999999999998889999999999988 5679
Q ss_pred CEEEEEeCCEEEE
Q psy7366 158 TKLTIMVNGQFTC 170 (566)
Q Consensus 158 d~i~vl~~G~i~~ 170 (566)
|||++|++|+++.
T Consensus 352 d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 352 DRKLRITGGVVVN 364 (365)
T ss_dssp SCEEEEETTEEC-
T ss_pred CEEEEEECCEEEe
Confidence 9999999999874
No 136
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.85 E-value=2.3e-21 Score=211.99 Aligned_cols=79 Identities=16% Similarity=0.222 Sum_probs=73.5
Q ss_pred cCcCcC-ChhHHHHHHHHHHHcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEE
Q psy7366 473 REVRTL-SGGNKRKLSTAIALLGNP--PLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTI 549 (566)
Q Consensus 473 ~~~~~L-SgGqkqrv~la~al~~~p--~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~ 549 (566)
+++.+| ||||||||+||++|+.+| ++|||||||+|||+.++..+.++|+++++ |.|||+||||++.+. .||++++
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~~~~-~~d~~~~ 469 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQIAA-RAHHHYK 469 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHHHHH-HSSEEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHH-hCCEEEE
Confidence 467788 999999999999999999 99999999999999999999999999987 899999999998775 6999999
Q ss_pred EECC
Q psy7366 550 MVNG 553 (566)
Q Consensus 550 l~~G 553 (566)
|+++
T Consensus 470 ~~~~ 473 (517)
T 4ad8_A 470 VEKQ 473 (517)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9655
No 137
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.85 E-value=3.9e-23 Score=204.27 Aligned_cols=168 Identities=13% Similarity=0.111 Sum_probs=110.7
Q ss_pred CCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCH
Q psy7366 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTP 436 (566)
Q Consensus 357 ~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 436 (566)
+++.+|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ ..++.++|++|+. +++.+|+
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~---------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE---------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC---------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc---------ccCCceEEEeCCc-CccccCH
Confidence 3567999999999999999999999999999999999976 444433 2356799999995 7778999
Q ss_pred HHHHHHHHHhcCCC--chHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHH
Q psy7366 437 REHLEFYSRVRNVP--SVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARR 514 (566)
Q Consensus 437 ~e~l~~~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~ 514 (566)
.+++.+........ .......+.+.++.+ .+..+.++..||+||+||+.+ ++++.+|+++|||||....|..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--- 149 (245)
T 2jeo_A 76 EQKAKALKGQYNFDHPDAFDNDLMHRTLKNI--VEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--- 149 (245)
T ss_dssp HHHHHHHTTCCCTTSGGGBCHHHHHHHHHHH--HTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH---
T ss_pred hHhhhhhccCCCCCCcccccHHHHHHHHHHH--HCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH---
Confidence 99987654332222 111223344555543 344577899999999999988 5888999999999998888764
Q ss_pred HHHHHHHHHHhCCcEEEEEccCHHHH-HhhCCEEEEEECCE
Q psy7366 515 FLWTCIERAVSEGRCVILTSHNMEEC-EALCTKLTIMVNGQ 554 (566)
Q Consensus 515 ~l~~~l~~~~~~g~tvl~vsHd~~~~-~~~~drv~~l~~G~ 554 (566)
+.++ .+.+|+++||+...+ ..+++++ .+|+
T Consensus 150 -----l~~~--~~~~i~v~th~~~~~~r~~~r~~---~~G~ 180 (245)
T 2jeo_A 150 -----IRDM--FHLRLFVDTDSDVRLSRRVLRDV---RRGR 180 (245)
T ss_dssp -----HHTT--CSEEEEEECCHHHHHHHHHHHHT---C---
T ss_pred -----HHHh--cCeEEEEECCHHHHHHHHHHHHH---HcCC
Confidence 1222 278999999974444 4455444 5554
No 138
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.85 E-value=8e-23 Score=201.58 Aligned_cols=164 Identities=16% Similarity=0.092 Sum_probs=109.4
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHH--CCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHH
Q psy7366 368 GVGRGECFGLLGLNGAGKTTTFKMLT--GAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSR 445 (566)
Q Consensus 368 ~i~~Ge~~~l~G~NGsGKSTLl~~i~--G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~ 445 (566)
.|++|++++|+||||||||||+++|+ |+.++..|.+++.+...........+.++|.+|+...++.+++.++......
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 105 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG 105 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccc
Confidence 68999999999999999999999999 7756777888888765433222333457777776433333343333221100
Q ss_pred hcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCC-----HHHHHHHHHHH
Q psy7366 446 VRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD-----PGARRFLWTCI 520 (566)
Q Consensus 446 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD-----~~~~~~l~~~l 520 (566)
. . .. . ........+.++..+......-..+|+++++||||++|| +..++.+.+++
T Consensus 106 ~---~----~~---~----------~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~ 165 (251)
T 2ehv_A 106 L---P----SE---E----------KFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLN 165 (251)
T ss_dssp --------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHH
T ss_pred c---c----cc---c----------ceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHH
Confidence 0 0 00 0 001112233455555555555568999999999999998 77777799999
Q ss_pred HHHHhCCcEEEEEccCHHHH---------HhhC-CEEEEEE
Q psy7366 521 ERAVSEGRCVILTSHNMEEC---------EALC-TKLTIMV 551 (566)
Q Consensus 521 ~~~~~~g~tvl~vsHd~~~~---------~~~~-drv~~l~ 551 (566)
+.+++.|+|||++||+++++ ..+| |++++|+
T Consensus 166 ~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 166 TILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred HHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 99887899999999999998 6788 9999995
No 139
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.83 E-value=1.4e-21 Score=224.32 Aligned_cols=168 Identities=20% Similarity=0.234 Sum_probs=117.8
Q ss_pred eEEEeeeEEEeCC-cCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHH--------HCCCCCCccEEEEcCccCCC
Q psy7366 342 VLVVKRLFKIYAN-SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML--------TGAIKPTSGNAYVMNHSIRD 412 (566)
Q Consensus 342 ~l~~~~l~~~y~~-~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i--------~G~~~~~~G~i~~~g~~~~~ 412 (566)
.+.+++...-+-. ..+...+++|++|++.+|++++|+||||||||||||++ .|...|..+..
T Consensus 631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~--------- 701 (934)
T 3thx_A 631 RIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE--------- 701 (934)
T ss_dssp EEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE---------
T ss_pred ceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc---------
Confidence 4666665433311 11245789999999999999999999999999999999 55544433211
Q ss_pred chHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHH
Q psy7366 413 SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIAL 492 (566)
Q Consensus 413 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al 492 (566)
++++. .++.++|+.+ .....+|+|++++..+|+++
T Consensus 702 --------~~~~d----------------------------------~i~~~ig~~d---~l~~~lStf~~e~~~~a~il 736 (934)
T 3thx_A 702 --------VSIVD----------------------------------CILARVGAGD---SQLKGVSTFMAEMLETASIL 736 (934)
T ss_dssp --------EECCS----------------------------------EEEEECC------------CHHHHHHHHHHHHH
T ss_pred --------chHHH----------------------------------HHHHhcCchh---hHHHhHhhhHHHHHHHHHHH
Confidence 11100 0111122221 12344677777777777777
Q ss_pred --cCCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366 493 --LGNPPLIFLDEPTSGMDPGARRFL-WTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564 (566)
Q Consensus 493 --~~~p~lllLDEPt~gLD~~~~~~l-~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l 564 (566)
+.+|+++||||||+|+|+.....+ +.+++.+.++ |.++|++||+.+. ..+||++..|.+|++...++.+++
T Consensus 737 ~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el-~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 737 RSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHEL-TALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp HHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGG-GGGGGTCTTEEEEEEEEEEETTEE
T ss_pred HhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHH-HHHhcccceeEeeEEEEEecCCcE
Confidence 999999999999999999998888 7777888764 9999999999655 578999999999999988877654
No 140
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.83 E-value=2.2e-23 Score=223.36 Aligned_cols=163 Identities=13% Similarity=0.082 Sum_probs=127.6
Q ss_pred CCcchHHHHHhccccCCCc---cCCCCCcccccccceeEEcCCCCC---CCCCCHHHHHHHHHHh-cCCChhhHHHHHHH
Q psy7366 1 MGLTTTPKRVVTLLLTTQK---VPGSNPTIDKNLSYIGYCPQFDAL---NDRLTPREHLEFYSRV-RNVPSVLLNTIVNE 73 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~~---~~~~~~~~~~~~~~ig~v~Q~~~l---~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~ 73 (566)
.||||++|+++|++.+... +... ....+.++|+||++.+ ...+||.||+ |+... .+. ...+++.+
T Consensus 149 sGKSTLlr~L~Gl~~p~~G~~pI~vd----g~~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~---~~~~~~~~ 220 (460)
T 2npi_A 149 TGKTSLSRTLCSYALKFNAYQPLYIN----LDPQQPIFTVPGCISATPISDILDAQLPT-WGQSLTSGA---TLLHNKQP 220 (460)
T ss_dssp SSHHHHHHHHHHTTHHHHCCCCEEEE----CCTTSCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSC---CSSCCBCC
T ss_pred CCHHHHHHHHhCcccccCCceeEEEc----CCccCCeeeeccchhhcccccccchhhhh-cccccccCc---chHHHHHH
Confidence 5999999999999864321 2111 1224579999999854 4467999998 65432 121 11234556
Q ss_pred HHHHcCCCcccccccccCChhHHHHHHHHHH--HhCCCCE----EEeeC-CCCCCCHHHHHHHHHHHHHHHhCCCEEEEe
Q psy7366 74 SLNKFALGHYSDREVRTLSGGNKRKLSTAIA--LLGNPPL----IFLDE-PTSGMDPGARRFLWTCIERAVSEGRCVILT 146 (566)
Q Consensus 74 ~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~a--l~~~p~v----LlLDE-Pt~~LD~~~~~~l~~~l~~l~~~g~tviii 146 (566)
+++.+|+....+ +.+|||||||||+||+| |+.+|++ ||||| ||++||+. ++.|.+++++ .|.|+|+|
T Consensus 221 ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~---~~~tviiV 294 (460)
T 2npi_A 221 MVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK---LNVNIMLV 294 (460)
T ss_dssp EECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH---TTCCEEEE
T ss_pred HHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH---hCCCEEEE
Confidence 788889987665 88999999999999999 9999999 99999 99999999 7777776654 37899999
Q ss_pred cCChh------HHHhhcCE-----EEEEe-CCEEEEecChhHHH
Q psy7366 147 SHNME------ECEALCTK-----LTIMV-NGQFTCLGSATHLK 178 (566)
Q Consensus 147 sH~~~------~~~~~~d~-----i~vl~-~G~i~~~g~~~~~~ 178 (566)
+|+.+ ++..+||| |++|+ +|+++ .|+++++.
T Consensus 295 th~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 295 LCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp ECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred EccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 99987 88899999 99999 99999 89888764
No 141
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.83 E-value=1.4e-20 Score=170.99 Aligned_cols=84 Identities=36% Similarity=0.463 Sum_probs=76.8
Q ss_pred cccccccCChhHHHHHHHH------HHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhc
Q psy7366 84 SDREVRTLSGGNKRKLSTA------IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALC 157 (566)
Q Consensus 84 ~~~~~~~LSgG~kqrl~iA------~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~ 157 (566)
.++++.+||||||||++|| +||+.+|++|||||||++||+.+++++.+.|+++++.|.|||++||++ ++.++|
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~~~~~ 129 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-ELKDAA 129 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG-GGGGGC
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH-HHHHhC
Confidence 4788999999999999876 899999999999999999999999999999999877799999999999 577899
Q ss_pred CEEEEE--eCCEE
Q psy7366 158 TKLTIM--VNGQF 168 (566)
Q Consensus 158 d~i~vl--~~G~i 168 (566)
|+|++| ++|..
T Consensus 130 d~ii~l~~~~g~s 142 (148)
T 1f2t_B 130 DHVIRISLENGSS 142 (148)
T ss_dssp SEEEEEEEETTEE
T ss_pred CEEEEEEcCCCeE
Confidence 999999 56653
No 142
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.83 E-value=1.1e-20 Score=200.97 Aligned_cols=83 Identities=18% Similarity=0.248 Sum_probs=75.8
Q ss_pred cccc-CChhHHHHHHHHHHHhCCC--CEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhcCEEEEE
Q psy7366 87 EVRT-LSGGNKRKLSTAIALLGNP--PLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIM 163 (566)
Q Consensus 87 ~~~~-LSgG~kqrl~iA~al~~~p--~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~d~i~vl 163 (566)
++.. ||||||||++||++|+.+| ++|||||||+|||+.++++|.++|++++ +|.|||+|||+++++ +.|||+++|
T Consensus 291 ~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~~~-~~~d~i~~l 368 (415)
T 4aby_A 291 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQIA-ARAHHHYKV 368 (415)
T ss_dssp BGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHHH-TTCSEEEEE
T ss_pred chhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHH-hhcCeEEEE
Confidence 3444 5999999999999999999 9999999999999999999999999986 699999999999776 679999999
Q ss_pred ----eCCEEEEe
Q psy7366 164 ----VNGQFTCL 171 (566)
Q Consensus 164 ----~~G~i~~~ 171 (566)
++|+++..
T Consensus 369 ~k~~~~G~~~~~ 380 (415)
T 4aby_A 369 EKQVEDGRTVSH 380 (415)
T ss_dssp EEEEETTEEEEE
T ss_pred EEeccCCceEEE
Confidence 99998754
No 143
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.82 E-value=4.4e-20 Score=167.64 Aligned_cols=84 Identities=36% Similarity=0.463 Sum_probs=76.5
Q ss_pred cccCcCcCChhHHHHHHHH------HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhC
Q psy7366 471 SDREVRTLSGGNKRKLSTA------IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALC 544 (566)
Q Consensus 471 ~~~~~~~LSgGqkqrv~la------~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~ 544 (566)
.++++.+||||||||++|| |||+.+|++|||||||+|||+.++..+.+.|.++.++|.|||++|||. ++..+|
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~~~~~ 129 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-ELKDAA 129 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG-GGGGGC
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH-HHHHhC
Confidence 5788999999999999876 899999999999999999999999999999999877789999999998 567899
Q ss_pred CEEEEE--ECCEE
Q psy7366 545 TKLTIM--VNGQF 555 (566)
Q Consensus 545 drv~~l--~~G~i 555 (566)
|++++| .+|..
T Consensus 130 d~ii~l~~~~g~s 142 (148)
T 1f2t_B 130 DHVIRISLENGSS 142 (148)
T ss_dssp SEEEEEEEETTEE
T ss_pred CEEEEEEcCCCeE
Confidence 999999 56643
No 144
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.80 E-value=5.5e-21 Score=185.93 Aligned_cols=148 Identities=15% Similarity=0.104 Sum_probs=96.7
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC-------CccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHH
Q psy7366 368 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-------TSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHL 440 (566)
Q Consensus 368 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~-------~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l 440 (566)
-|++|++++|+||||||||||+++|+|...+ ..|.++++++.... ..++++++|...+++. ++.+|+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~-----~~~i~~~~~~~~~~~~-~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR-----PERIREIAQNRGLDPD-EVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC-----HHHHHHHHHHTTSCHH-HHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC-----HHHHHHHHHHcCCCHH-HHhhcE
Confidence 5899999999999999999999999996554 33467777754311 1134555665554443 555554
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHH-HHHHHHHHH-------cCCCCEEEEeCCCCCCCHH-
Q psy7366 441 EFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNK-RKLSTAIAL-------LGNPPLIFLDEPTSGMDPG- 511 (566)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqk-qrv~la~al-------~~~p~lllLDEPt~gLD~~- 511 (566)
.+.. .++.+++ +.+..++++ ..+|+++++||||+++|+.
T Consensus 95 ~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~ 142 (231)
T 4a74_A 95 YVAR--------------------------------AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEY 142 (231)
T ss_dssp EEEE--------------------------------CCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHS
T ss_pred EEEe--------------------------------cCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhcccc
Confidence 3211 1122221 223333333 3599999999999999984
Q ss_pred ------H-----HHHHHHHHHHHHhC-CcEEEEEccCHHH----HHhhCCEEEEEECC
Q psy7366 512 ------A-----RRFLWTCIERAVSE-GRCVILTSHNMEE----CEALCTKLTIMVNG 553 (566)
Q Consensus 512 ------~-----~~~l~~~l~~~~~~-g~tvl~vsHd~~~----~~~~~drv~~l~~G 553 (566)
. ...+++.|.+++++ |.|||++||+.++ +..+||++++|++|
T Consensus 143 ~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 143 IGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 2 23677777777654 9999999995554 88999999999875
No 145
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.80 E-value=4.2e-21 Score=191.29 Aligned_cols=132 Identities=18% Similarity=0.194 Sum_probs=100.1
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCC-ccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHH
Q psy7366 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT-SGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPRE 438 (566)
Q Consensus 360 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~-~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 438 (566)
++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++. |++|+...+
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~-----------~~~~~~~~~------- 74 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-----------YVFKHKKSI------- 74 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCC-----------SCCCCSSSE-------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcce-----------eecCCccee-------
Confidence 4899999 8999999999999999999999999999998 999999997742 333322100
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHH
Q psy7366 439 HLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 518 (566)
Q Consensus 439 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~ 518 (566)
... ..+++.. ..| |++||++|..+|++||+|||| |+.+...+
T Consensus 75 ----------v~q-----------~~~gl~~------~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~-- 116 (261)
T 2eyu_A 75 ----------VNQ-----------REVGEDT------KSF------ADALRAALREDPDVIFVGEMR---DLETVETA-- 116 (261)
T ss_dssp ----------EEE-----------EEBTTTB------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHH--
T ss_pred ----------eeH-----------HHhCCCH------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHH--
Confidence 000 0223221 122 799999999999999999999 98886544
Q ss_pred HHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEEC
Q psy7366 519 CIERAVSEGRCVILTSHNMEECEALCTKLTIMVN 552 (566)
Q Consensus 519 ~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~ 552 (566)
++. +..|.+|+++||+.+ +...|||+++|..
T Consensus 117 -l~~-~~~g~~vl~t~H~~~-~~~~~dri~~l~~ 147 (261)
T 2eyu_A 117 -LRA-AETGHLVFGTLHTNT-AIDTIHRIVDIFP 147 (261)
T ss_dssp -HHH-HHTTCEEEEEECCSS-HHHHHHHHHHTSC
T ss_pred -HHH-HccCCEEEEEeCcch-HHHHHHHHhhhcC
Confidence 333 356999999999977 5677888776643
No 146
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.79 E-value=2.3e-20 Score=213.78 Aligned_cols=145 Identities=14% Similarity=0.112 Sum_probs=100.7
Q ss_pred CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHH
Q psy7366 358 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPR 437 (566)
Q Consensus 358 ~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~ 437 (566)
+..+++|+||++++|++++|+||||||||||||+|+++..... .-.++|+.....+ +
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq-------------------~g~~vpa~~~~i~---~- 715 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQ-------------------IGSYVPAEEATIG---I- 715 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHH-------------------HTCCBSSSEEEEE---C-
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhh-------------------cCccccchhhhhh---H-
Confidence 4679999999999999999999999999999999975421100 0012222110000 0
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHH
Q psy7366 438 EHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 517 (566)
Q Consensus 438 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~ 517 (566)
++.++.++++.+...+..+++|+||+|++.|+++ +.+|+++||||||+|||+.....+.
T Consensus 716 --------------------~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~ 774 (918)
T 3thx_B 716 --------------------VDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIA 774 (918)
T ss_dssp --------------------CSEEEEEC----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHH
T ss_pred --------------------HHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHH
Confidence 0011222333444456678999999999999999 8999999999999999999998887
Q ss_pred -HHHHHHHh-CCcEEEEEccCHHHHHhhCCEE
Q psy7366 518 -TCIERAVS-EGRCVILTSHNMEECEALCTKL 547 (566)
Q Consensus 518 -~~l~~~~~-~g~tvl~vsHd~~~~~~~~drv 547 (566)
.+++.+.+ .|.++|++|||++.+ .+||+.
T Consensus 775 ~~il~~L~~~~g~tvl~vTH~~el~-~l~~~~ 805 (918)
T 3thx_B 775 YATLEYFIRDVKSLTLFVTHYPPVC-ELEKNY 805 (918)
T ss_dssp HHHHHHHHHTTCCEEEEECSCGGGG-GHHHHT
T ss_pred HHHHHHHHHhcCCeEEEEeCcHHHH-HHHhhc
Confidence 77777765 599999999998665 466654
No 147
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.79 E-value=6.4e-22 Score=201.48 Aligned_cols=164 Identities=14% Similarity=0.119 Sum_probs=88.5
Q ss_pred eeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCC-CCCCccEEEEcCccCCCchHHhcCceEEE
Q psy7366 346 KRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA-IKPTSGNAYVMNHSIRDSMDLVRSYIGYC 424 (566)
Q Consensus 346 ~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~-~~~~~G~i~~~g~~~~~~~~~~~~~i~~v 424 (566)
.||++.|+ ++.++++++|+| +|+||||+|||||+++|+|. ..|++| |.++|.++..... ...++|+
T Consensus 2 ~~l~~~~~----~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~--~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVH----RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQ--IEASTVE 68 (301)
T ss_dssp --------------------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEE
T ss_pred CCCcceEC----CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcce--EeeEEEE
Confidence 47888886 577999999998 99999999999999999998 889999 8888877643211 3468999
Q ss_pred ecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCC
Q psy7366 425 PQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEP 504 (566)
Q Consensus 425 ~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEP 504 (566)
+|+..++..+|+.|+..++..... ..........+ .+..++++.++|||||||+.+||+++ ++++|||
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~~~~~~--~e~~~~l~~~l------~~~~~~~~~~~sgg~rqrv~~ara~~----ll~ldeP 136 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYGDAINC--RDCFKTIISYI------DEQFERYLHDESGLNRRHIIDNRVHC----CFYFISP 136 (301)
T ss_dssp EC---CCEEEEEEEEC-------------CTTHHHHH------HHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEECS
T ss_pred ecCCCcccCcchhhhhhhhhhcCc--HHHHHHHHHHH------HHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeecC
Confidence 998877777888887665322110 00000111111 12345788999999999999988886 9999999
Q ss_pred CCC-CCHHHHHHHHHHHHHHHhC-CcEEEEEccCHH
Q psy7366 505 TSG-MDPGARRFLWTCIERAVSE-GRCVILTSHNME 538 (566)
Q Consensus 505 t~g-LD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~ 538 (566)
|++ ||+... ++++++.+. +.++|+++||+.
T Consensus 137 t~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 137 FGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp SSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred cccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 985 999874 555666544 789999999973
No 148
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.79 E-value=1.8e-20 Score=211.74 Aligned_cols=160 Identities=18% Similarity=0.122 Sum_probs=114.8
Q ss_pred eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCC-CCccEEEEcCccCCCchHHhcCc
Q psy7366 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-PTSGNAYVMNHSIRDSMDLVRSY 420 (566)
Q Consensus 342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~ 420 (566)
.+.+++...-.-.. ++..+++|+||+ |++++|+||||||||||||+|+|+.. +..|.+. + ..+..
T Consensus 550 ~i~i~~~rHP~le~-~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----p------a~~~~ 615 (765)
T 1ewq_A 550 RLQIRAGRHPVVER-RTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV----P------AEEAH 615 (765)
T ss_dssp SEEEEEECCTTGGG-TSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----S------SSEEE
T ss_pred cEEEEEeECceEcc-CCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee----e------hhccc
Confidence 46777663322100 246789999999 99999999999999999999999874 6777642 1 11335
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHH--cCCCCE
Q psy7366 421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIAL--LGNPPL 498 (566)
Q Consensus 421 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al--~~~p~l 498 (566)
+++++| +++.+++.||+.. .+|+|+++++.+++++ +.+|++
T Consensus 616 i~~v~~---i~~~~~~~d~l~~----------------------------------g~S~~~~e~~~la~il~~a~~p~L 658 (765)
T 1ewq_A 616 LPLFDG---IYTRIGASDDLAG----------------------------------GKSTFMVEMEEVALILKEATENSL 658 (765)
T ss_dssp ECCCSE---EEEECCC----------------------------------------CCSHHHHHHHHHHHHHHHCCTTEE
T ss_pred eeeHHH---hhccCCHHHHHHh----------------------------------cccHHHHHHHHHHHHHHhccCCCE
Confidence 777776 4555677666531 2588999999999999 999999
Q ss_pred EEEeCC---CCCCCHHHH-HHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEe
Q psy7366 499 IFLDEP---TSGMDPGAR-RFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCL 558 (566)
Q Consensus 499 llLDEP---t~gLD~~~~-~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~ 558 (566)
+||||| |++||+.+. ..+.+.|.+ .|.++|++||+.+.+. +| .-.+.++.+...
T Consensus 659 lLLDEpgrGTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~l~~-~~--~~~v~n~~~~~~ 716 (765)
T 1ewq_A 659 VLLDEVGRGTSSLDGVAIATAVAEALHE---RRAYTLFATHYFELTA-LG--LPRLKNLHVAAR 716 (765)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHHHHT-CC--CTTEEEEEEEEE
T ss_pred EEEECCCCCCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHH-hh--hhcceEEEEEEE
Confidence 999999 999999886 467777765 4899999999987764 55 222344444443
No 149
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.79 E-value=4e-22 Score=191.99 Aligned_cols=146 Identities=15% Similarity=0.153 Sum_probs=118.8
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCC--CCCCHHHHHHHHHHh
Q psy7366 369 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALN--DRLTPREHLEFYSRV 446 (566)
Q Consensus 369 i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~--~~~tv~e~l~~~~~~ 446 (566)
.++|+++||+||||||||||+++|+|++.| .++|++|++.++ ..+|+.+++.+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~-- 59 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNY-- 59 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCC--
Confidence 578999999999999999999999998764 389999998765 5678988865432
Q ss_pred cCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHH----HHHHHHHHHcCCCCEEEEeCCCCC-------CCHHHHHH
Q psy7366 447 RNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNK----RKLSTAIALLGNPPLIFLDEPTSG-------MDPGARRF 515 (566)
Q Consensus 447 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqk----qrv~la~al~~~p~lllLDEPt~g-------LD~~~~~~ 515 (566)
+.+.....+.+.+.++.+++.+..+.++..+|+|++ ||+.+|++++.+|+++++||||++ ||+.....
T Consensus 60 -~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~ 138 (211)
T 3asz_A 60 -DHPDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADER 138 (211)
T ss_dssp -TSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHH
T ss_pred -CChhhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHH
Confidence 122222345577788888888777888999999974 688999999999999999999999 99999999
Q ss_pred HHHHHHHH-HhCCcEEEEEccCHH
Q psy7366 516 LWTCIERA-VSEGRCVILTSHNME 538 (566)
Q Consensus 516 l~~~l~~~-~~~g~tvl~vsHd~~ 538 (566)
+.+.+.+. .+.|.|++.++|++.
T Consensus 139 ~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 139 FIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99988875 456999999999853
No 150
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.78 E-value=7.6e-19 Score=187.77 Aligned_cols=78 Identities=21% Similarity=0.211 Sum_probs=70.0
Q ss_pred cCcCcCChhHHHHHHHHHHHc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEE
Q psy7366 473 REVRTLSGGNKRKLSTAIALL----GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLT 548 (566)
Q Consensus 473 ~~~~~LSgGqkqrv~la~al~----~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~ 548 (566)
+++..||||||||++||++|+ .+|+++||||||++||+..+..+.+.|+++.+++.++|++||+... ...||+++
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~-~~~~d~~~ 407 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTM-FEKSDALV 407 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHH-HTTCSEEE
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHH-HHhCCEEE
Confidence 445679999999999999999 6899999999999999999999999999886668899999999665 56799999
Q ss_pred EEE
Q psy7366 549 IMV 551 (566)
Q Consensus 549 ~l~ 551 (566)
+|.
T Consensus 408 ~~~ 410 (430)
T 1w1w_A 408 GVY 410 (430)
T ss_dssp EEE
T ss_pred EEE
Confidence 885
No 151
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.77 E-value=7.4e-21 Score=193.42 Aligned_cols=150 Identities=15% Similarity=0.070 Sum_probs=108.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCch-----HH--hcCceEEEecCCCCCCCCCHHHHHHHH
Q psy7366 371 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM-----DL--VRSYIGYCPQFDALNDRLTPREHLEFY 443 (566)
Q Consensus 371 ~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-----~~--~~~~i~~v~q~~~l~~~~tv~e~l~~~ 443 (566)
+|++++|+||||||||||+++|+|+++|++|+|.+.|.++.... .. .+..++|++|++.+++..++++|+.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999875421 11 245799999999888888999998764
Q ss_pred HHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy7366 444 SRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERA 523 (566)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 523 (566)
... +.. ..+++..|..+.....+.+|| +||++||||++.+|+.++| .||+.+...+.+.++++
T Consensus 181 ~~~-~~d--------~~llDt~G~~~~~~~~~~eLs---~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~ 243 (304)
T 1rj9_A 181 KAR-GYD--------LLFVDTAGRLHTKHNLMEELK---KVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKF 243 (304)
T ss_dssp HHH-TCS--------EEEECCCCCCTTCHHHHHHHH---HHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHH
T ss_pred HhC-CCC--------EEEecCCCCCCchHHHHHHHH---HHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHH
Confidence 321 110 012233344333333444454 8999999999999994444 44444444566666666
Q ss_pred HhC-CcEEEEEccCH
Q psy7366 524 VSE-GRCVILTSHNM 537 (566)
Q Consensus 524 ~~~-g~tvl~vsHd~ 537 (566)
.+. |.|+|++||+.
T Consensus 244 ~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 244 HEAVGLTGVIVTKLD 258 (304)
T ss_dssp HHHHCCSEEEEECTT
T ss_pred HHHcCCcEEEEECCc
Confidence 654 89999999984
No 152
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.77 E-value=3.1e-21 Score=214.31 Aligned_cols=190 Identities=14% Similarity=0.226 Sum_probs=119.2
Q ss_pred eEEEeeeEEEeCCcCCCcceeeee----------eEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC-CccEEEEcCccC
Q psy7366 342 VLVVKRLFKIYANSKGTKPAVNQI----------SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-TSGNAYVMNHSI 410 (566)
Q Consensus 342 ~l~~~~l~~~y~~~~~~~~~l~~i----------sl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~ 410 (566)
.+.++|+++.|+.. .+++|+.+ +|+++. +||+|||||||||||++|+|+..| ++|.|+++|.++
T Consensus 10 ~i~~~~l~~~~~~~--~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i 84 (608)
T 3szr_A 10 SVAENNLCSQYEEK--VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVL 84 (608)
T ss_dssp ----------CHHH--HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEE
T ss_pred hhhhhhhhHHHHHH--HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEE
Confidence 46788888888521 12344433 366665 999999999999999999999988 799999999885
Q ss_pred CC----chHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHH
Q psy7366 411 RD----SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKL 486 (566)
Q Consensus 411 ~~----~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv 486 (566)
.. ....++..++|+||++.+++.+||.+|+.+.....+... -++. . +++
T Consensus 85 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~-------------~~~s---~-----------~~i 137 (608)
T 3szr_A 85 KLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEG-------------MGIS---H-----------ELI 137 (608)
T ss_dssp EEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSS-------------SCCC---S-----------CCE
T ss_pred EEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCc-------------cccc---h-----------HHH
Confidence 21 123456789999999999999999999876532211000 0111 0 112
Q ss_pred HHHHHHcCCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHHhC--CcEEEEEccCHHH--------HHhh----CCE
Q psy7366 487 STAIALLGNPPLIFLDEP------TSGMDPGARRFLWTCIERAVSE--GRCVILTSHNMEE--------CEAL----CTK 546 (566)
Q Consensus 487 ~la~al~~~p~lllLDEP------t~gLD~~~~~~l~~~l~~~~~~--g~tvl~vsHd~~~--------~~~~----~dr 546 (566)
.++.+....|+++|+||| |+|||+..+..+.++++++.++ +.+++++|||++. +..+ +..
T Consensus 138 ~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rt 217 (608)
T 3szr_A 138 TLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRT 217 (608)
T ss_dssp EEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSE
T ss_pred HHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCce
Confidence 222233458999999999 9999999999999999997543 7889999999762 2332 356
Q ss_pred EEEEECCEEEEecCccc
Q psy7366 547 LTIMVNGQFTCLGSATH 563 (566)
Q Consensus 547 v~~l~~G~i~~~g~~~~ 563 (566)
|+|+.++.++..|+.++
T Consensus 218 I~VlTK~Dlv~~g~~~~ 234 (608)
T 3szr_A 218 IGILTKPDLVDKGTEDK 234 (608)
T ss_dssp EEEEECGGGSSSSSTTC
T ss_pred EEEecchhhcCcccHHH
Confidence 78899988877776543
No 153
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.76 E-value=1.2e-19 Score=206.24 Aligned_cols=156 Identities=17% Similarity=0.184 Sum_probs=109.1
Q ss_pred CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC-CccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCH
Q psy7366 358 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-TSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTP 436 (566)
Q Consensus 358 ~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 436 (566)
++.+++|++|+ ++|++++|+||||||||||||+|+|+..+ ..|. .+.. .+..+++++| ++..+++
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~vpa----~~~~i~~~~~---i~~~~~~ 659 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YVPA----QKVEIGPIDR---IFTRVGA 659 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CBSS----SEEEECCCCE---EEEEEC-
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------ccch----hcccceeHHH---HHhhCCH
Confidence 45789999999 99999999999999999999999997432 2221 1110 1123555554 3444555
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHH
Q psy7366 437 REHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 516 (566)
Q Consensus 437 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l 516 (566)
.+|+.. ..+++|+++++ ++.+...+.+|+++|||||++|+|+.....+
T Consensus 660 ~d~l~~-------------------------------~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i 707 (800)
T 1wb9_A 660 ADDLAS-------------------------------GRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSL 707 (800)
T ss_dssp -----------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHH
T ss_pred HHHHHh-------------------------------hhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHH
Confidence 555421 12346677664 4445557999999999999999999877775
Q ss_pred -HHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecC
Q psy7366 517 -WTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 560 (566)
Q Consensus 517 -~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~ 560 (566)
+.+++.+.++ |.++|++|||.+.+ .+||++..+.+|++.....
T Consensus 708 ~~~ll~~l~~~~g~~vl~~TH~~el~-~l~d~~~~v~n~~~~~~~~ 752 (800)
T 1wb9_A 708 AWACAENLANKIKALTLFATHYFELT-QLPEKMEGVANVHLDALEH 752 (800)
T ss_dssp HHHHHHHHHHTTCCEEEEECSCGGGG-GHHHHSTTEEEEEEEEEEE
T ss_pred HHHHHHHHHhccCCeEEEEeCCHHHH-HHhhhhhceEEEEEEEEEc
Confidence 7888888874 99999999998765 5899887778887765543
No 154
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.76 E-value=2.9e-21 Score=183.08 Aligned_cols=158 Identities=15% Similarity=0.038 Sum_probs=105.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCc
Q psy7366 372 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPS 451 (566)
Q Consensus 372 Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~ 451 (566)
|++++|+||||||||||+++|+|+++ ++| |.++|...... ...++++||++|+.. ... +++. .+. ...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~-~~~~~~ig~~~~~~~--g~~---~~l~---~~~-~~~ 68 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEV-RQGGRRIGFDVVTLS--GTR---GPLS---RVG-LEP 68 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEE-ETTSSEEEEEEEETT--SCE---EEEE---ECC-CCC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchh-HhhhceEEEEEEecc--cce---ehhh---ccc-ccC
Confidence 78999999999999999999999999 999 99999876432 235778999999751 111 1110 000 000
Q ss_pred hHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHH-HHHH---HHcCCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHHh
Q psy7366 452 VLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKL-STAI---ALLGNPPLIFLDE--PTSGMDPGARRFLWTCIERAVS 525 (566)
Q Consensus 452 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv-~la~---al~~~p~lllLDE--Pt~gLD~~~~~~l~~~l~~~~~ 525 (566)
. ...-.+...++...+|+|||+++ ++++ |++.+|++||||| |+..+|+...+.+.+++.
T Consensus 69 ~-----------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~---- 133 (189)
T 2i3b_A 69 P-----------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS---- 133 (189)
T ss_dssp C-----------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH----
T ss_pred C-----------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh----
Confidence 0 00001134556678999999888 4444 5799999999999 899999987666655554
Q ss_pred CCcEEE----EEccCHHHHHhhCCEEEEEECCEEEEe
Q psy7366 526 EGRCVI----LTSHNMEECEALCTKLTIMVNGQFTCL 558 (566)
Q Consensus 526 ~g~tvl----~vsHd~~~~~~~~drv~~l~~G~i~~~ 558 (566)
...++| .+||+.+ ..++|++..+.+|+|...
T Consensus 134 ~~~~~ilgti~vsh~~~--~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 134 TPGTIILGTIPVPKGKP--LALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp CSSCCEEEECCCCCSSC--CTTHHHHHTTCCSEEEEC
T ss_pred CCCcEEEEEeecCCCCc--hHHHHHHeecCCcEEEEe
Confidence 344444 3459862 123344444566776654
No 155
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.75 E-value=5.2e-20 Score=179.03 Aligned_cols=169 Identities=10% Similarity=0.026 Sum_probs=115.7
Q ss_pred cceeeeeeE-EEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc-hHHhcCceEEEecCCCCCCCCCH
Q psy7366 359 KPAVNQISF-GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS-MDLVRSYIGYCPQFDALNDRLTP 436 (566)
Q Consensus 359 ~~~l~~isl-~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~v~q~~~l~~~~tv 436 (566)
.+.|+++.. .+++|++++|+||||||||||++.|++...+..|.|.+.+.+.... .......+++.+|..... .+.+
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 87 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KLII 87 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TEEE
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CEEE
Confidence 456888887 8999999999999999999999999998887778887766543211 001111223333221000 0000
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCC--EEEEeCCCCCC--CHHH
Q psy7366 437 REHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP--LIFLDEPTSGM--DPGA 512 (566)
Q Consensus 437 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~--lllLDEPt~gL--D~~~ 512 (566)
..... ..++ ... .....|.++.++...+.+...+|+ ++++||||+++ |+..
T Consensus 88 ---------~~~~~------------~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~ 142 (235)
T 2w0m_A 88 ---------IDALM------------KEKE-DQW---SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAM 142 (235)
T ss_dssp ---------EECCC-----------------CTT---BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGG
T ss_pred ---------Eeccc------------cccC-cee---eecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHH
Confidence 00000 0000 111 123449999998888888888999 99999999887 9999
Q ss_pred HHHHHHHHHHHHh-CCcEEEEEccCH--------HHHHhhCCEEEEEECC
Q psy7366 513 RRFLWTCIERAVS-EGRCVILTSHNM--------EECEALCTKLTIMVNG 553 (566)
Q Consensus 513 ~~~l~~~l~~~~~-~g~tvl~vsHd~--------~~~~~~~drv~~l~~G 553 (566)
+..+++.|+++++ .|.|||++||+. ..+..+||++++|+..
T Consensus 143 ~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 143 ARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 9999999999865 599999999999 5588999999999754
No 156
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.75 E-value=1.6e-19 Score=169.48 Aligned_cols=136 Identities=12% Similarity=0.022 Sum_probs=96.8
Q ss_pred CCcchHHHHHhccccCCCccCCCCCccc---ccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q psy7366 1 MGLTTTPKRVVTLLLTTQKVPGSNPTID---KNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNK 77 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~~~~~~~~~~~---~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~ 77 (566)
+||||++|++++++- -.+.+...... .....+||++|++ ++.+++ + ... +..
T Consensus 11 sGKTTLl~~l~g~l~--i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~-~~~-------------- 65 (178)
T 1ye8_A 11 VGKTTLVKKIVERLG--KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-SSK-FFT-------------- 65 (178)
T ss_dssp SSHHHHHHHHHHHHG--GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-EET-TCC--------------
T ss_pred CCHHHHHHHHHHHhC--CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-Hhh-cCC--------------
Confidence 599999999999872 11111111000 2235799999986 222222 1 000 000
Q ss_pred cCCCcccccccccCChhHHHHHHHHHH-----HhCCCCEEEeeC--CCCCCCHHHHHHHHHHHHHHHhCCCEEEEec---
Q psy7366 78 FALGHYSDREVRTLSGGNKRKLSTAIA-----LLGNPPLIFLDE--PTSGMDPGARRFLWTCIERAVSEGRCVILTS--- 147 (566)
Q Consensus 78 ~gl~~~~~~~~~~LSgG~kqrl~iA~a-----l~~~p~vLlLDE--Pt~~LD~~~~~~l~~~l~~l~~~g~tviiis--- 147 (566)
-....++++.+||||||||++||+| ++.+|++||||| ||++||+..++.+.+++++ .+.|+|+++
T Consensus 66 --~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~---~~~~~i~~~H~~ 140 (178)
T 1ye8_A 66 --SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD---PNVNVVATIPIR 140 (178)
T ss_dssp --CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC---TTSEEEEECCSS
T ss_pred --ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc---CCCeEEEEEccC
Confidence 0135678899999999999999996 999999999999 9999999999999998864 577788888
Q ss_pred CChhHHHhhcCEEEEEeCCEEEE
Q psy7366 148 HNMEECEALCTKLTIMVNGQFTC 170 (566)
Q Consensus 148 H~~~~~~~~~d~i~vl~~G~i~~ 170 (566)
|+++++..+||| .+|+++.
T Consensus 141 h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 141 DVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp CCSHHHHHHHTC----TTCEEEE
T ss_pred CCchHHHHHHhc----CCcEEEE
Confidence 599999999998 5566654
No 157
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.74 E-value=1.4e-18 Score=178.58 Aligned_cols=84 Identities=26% Similarity=0.309 Sum_probs=75.4
Q ss_pred cccccccCChhHHHHHHHHHHHh----CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhcCE
Q psy7366 84 SDREVRTLSGGNKRKLSTAIALL----GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTK 159 (566)
Q Consensus 84 ~~~~~~~LSgG~kqrl~iA~al~----~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~d~ 159 (566)
.++++.+||+|||||++||+||+ .+|++|||||||++||+..++.+.++|+++ ..|.+||++||+. ++.++||+
T Consensus 213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~-~~~~~vi~~tH~~-~~~~~~d~ 290 (322)
T 1e69_A 213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKEN-SKHTQFIVITHNK-IVMEAADL 290 (322)
T ss_dssp CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHH-TTTSEEEEECCCT-TGGGGCSE
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEEECCH-HHHhhCce
Confidence 56788999999999999999997 689999999999999999999999999998 4589999999996 46678998
Q ss_pred E--EEEeCCEEE
Q psy7366 160 L--TIMVNGQFT 169 (566)
Q Consensus 160 i--~vl~~G~i~ 169 (566)
+ ++|.+|...
T Consensus 291 ~~~v~~~~g~s~ 302 (322)
T 1e69_A 291 LHGVTMVNGVSA 302 (322)
T ss_dssp EEEEEESSSCEE
T ss_pred EEEEEEeCCEEE
Confidence 7 888888654
No 158
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.74 E-value=6.9e-20 Score=190.18 Aligned_cols=163 Identities=15% Similarity=0.137 Sum_probs=105.6
Q ss_pred ceeeee-eEEEeCCcEEEEEcCCCCcHHHHHHHHHCCC--CCCc----cE-EEEcCccCCCchHHhcCceEEEecCCCCC
Q psy7366 360 PAVNQI-SFGVGRGECFGLLGLNGAGKTTTFKMLTGAI--KPTS----GN-AYVMNHSIRDSMDLVRSYIGYCPQFDALN 431 (566)
Q Consensus 360 ~~l~~i-sl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~--~~~~----G~-i~~~g~~~~~~~~~~~~~i~~v~q~~~l~ 431 (566)
..|+.+ ++.|++|++++|+||||||||||++.+++.. +|++ |+ |++++++... ++++++++|.+.++
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~-----~~~i~~i~q~~~~~ 192 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR-----PERIREIAQNRGLD 192 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCC-----HHHHHHHHHTTTCC
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCC-----HHHHHHHHHHcCCC
Confidence 356665 6899999999999999999999999999998 6776 67 8999876421 23577788877655
Q ss_pred CCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHc-------CCCCEEEEeCC
Q psy7366 432 DRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL-------GNPPLIFLDEP 504 (566)
Q Consensus 432 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~-------~~p~lllLDEP 504 (566)
+. ++.+|+.+.. ... |.+++|++.++++++ .+|++||+|||
T Consensus 193 ~~-~v~~ni~~~~---~~~----------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ 240 (349)
T 1pzn_A 193 PD-EVLKHIYVAR---AFN----------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSL 240 (349)
T ss_dssp HH-HHGGGEEEEE---CCS----------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETS
T ss_pred HH-HHhhCEEEEe---cCC----------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCc
Confidence 43 5555543321 000 234444555555544 79999999999
Q ss_pred CCCCCHHH------------HHHHHHHHHHHHh-CCcEEEEEccCHHHHHhhCCEEEEEECCEEEEec
Q psy7366 505 TSGMDPGA------------RRFLWTCIERAVS-EGRCVILTSHNMEECEALCTKLTIMVNGQFTCLG 559 (566)
Q Consensus 505 t~gLD~~~------------~~~l~~~l~~~~~-~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g 559 (566)
|+++|+.. ...++..|.++++ .|.|||+++|.......+++.......|++++++
T Consensus 241 ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~ 308 (349)
T 1pzn_A 241 TSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHS 308 (349)
T ss_dssp STTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTT
T ss_pred hHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeec
Confidence 99999862 3556666666655 4999999999987665444444555556554443
No 159
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.72 E-value=5.5e-20 Score=176.90 Aligned_cols=131 Identities=12% Similarity=0.114 Sum_probs=81.1
Q ss_pred CCcchHHHHHhccccCCC-ccCCCCCc--ccccccceeEEcCCCCCCCCCCHHHHH-HHHH----HhcCCChhhHHHHHH
Q psy7366 1 MGLTTTPKRVVTLLLTTQ-KVPGSNPT--IDKNLSYIGYCPQFDALNDRLTPREHL-EFYS----RVRNVPSVLLNTIVN 72 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~-~~~~~~~~--~~~~~~~ig~v~Q~~~l~~~~tv~e~l-~~~~----~~~~~~~~~~~~~~~ 72 (566)
.||||++|+++|+ .|++ .+...... .......|||+||++ .||+ .+.. ...... ...++.
T Consensus 33 sGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~--------~enl~~~~~~~~~~~~~~~---~~~~~~ 100 (208)
T 3b85_A 33 SGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL--------NEKIDPYLRPLHDALRDMV---EPEVIP 100 (208)
T ss_dssp SSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC--------------CTTTHHHHHHHTTTS---CTTHHH
T ss_pred CCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH--------HHHHHHHHHHHHHHHHHhc---cHHHHH
Confidence 5999999999999 7654 22211000 012235699999987 3444 2211 111110 123456
Q ss_pred HHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhH
Q psy7366 73 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEE 152 (566)
Q Consensus 73 ~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~ 152 (566)
++++. |+ |||||++||+||+.+|++|||||||++ ++.+++++|+++ ++|.||| +|||+++
T Consensus 101 ~~l~~-gl-------------Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~~g~tii-vtHd~~~ 160 (208)
T 3b85_A 101 KLMEA-GI-------------VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-GFGSKMV-VTGDITQ 160 (208)
T ss_dssp HHHHT-TS-------------EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-CTTCEEE-EEEC---
T ss_pred HHHHh-CC-------------chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-cCCCEEE-EECCHHH
Confidence 66665 43 999999999999999999999999999 999999999988 6789999 9999987
Q ss_pred HHhhcCEEEEEeCCE
Q psy7366 153 CEALCTKLTIMVNGQ 167 (566)
Q Consensus 153 ~~~~~d~i~vl~~G~ 167 (566)
++. +....+|.
T Consensus 161 ~~~----~~~~~~G~ 171 (208)
T 3b85_A 161 VDL----PGGQKSGL 171 (208)
T ss_dssp -------------CC
T ss_pred HhC----cCCCCCcH
Confidence 653 33445554
No 160
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.72 E-value=6.2e-20 Score=175.92 Aligned_cols=174 Identities=14% Similarity=0.064 Sum_probs=102.5
Q ss_pred eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCC-----CCCccEEEEcCccCCCchHH
Q psy7366 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI-----KPTSGNAYVMNHSIRDSMDL 416 (566)
Q Consensus 342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~-----~~~~G~i~~~g~~~~~~~~~ 416 (566)
+|+++|+++.|+ ..++++ |.+.+|.+++|+|+||||||||++.|+|.. .|+.|.+.+.+.-..
T Consensus 3 ~l~~~~~~~~~~-----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~----- 70 (210)
T 1pui_A 3 NLNYQQTHFVMS-----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEV----- 70 (210)
T ss_dssp --------CEEE-----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEE-----
T ss_pred chhhhhhhheee-----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEe-----
Confidence 478999999995 257777 889999999999999999999999999998 788887654321000
Q ss_pred hcCceEEEecCCCCCC----CCC---HHHHHHHHHHh-c-----------CCCchHHHHHHHHHHHHcCCCCc-cccCcC
Q psy7366 417 VRSYIGYCPQFDALND----RLT---PREHLEFYSRV-R-----------NVPSVLLNTIVNESLNKFALGHY-SDREVR 476 (566)
Q Consensus 417 ~~~~i~~v~q~~~l~~----~~t---v~e~l~~~~~~-~-----------~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~ 476 (566)
...+-++ +-+.... ... ....+..+... . ..........+.+++...++... ...++.
T Consensus 71 -~~~~~l~-Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D 148 (210)
T 1pui_A 71 -ADGKRLV-DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKAD 148 (210)
T ss_dssp -ETTEEEE-ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGG
T ss_pred -cCCEEEE-ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEeccc
Confidence 0011111 1111100 000 01111111110 0 00111222345566777777643 367789
Q ss_pred cCChhHHHH-HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcE
Q psy7366 477 TLSGGNKRK-LSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC 529 (566)
Q Consensus 477 ~LSgGqkqr-v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~t 529 (566)
.+|+||+|| +..+++++.+|+++++|||||++|+.....+++.|.++..+|.+
T Consensus 149 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 149 KLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp GSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred CCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 999999999 89999999999999999999999999999999999988765543
No 161
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.71 E-value=2.2e-17 Score=166.14 Aligned_cols=154 Identities=14% Similarity=0.097 Sum_probs=107.4
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhc
Q psy7366 368 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVR 447 (566)
Q Consensus 368 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~ 447 (566)
.+++|++++|+||||||||||++.+++... .|.+. .|.+... ...+.|+..+... ..+.+.+.-. . .
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~-----~~~v~~~~~e~~~---~~~~~r~~~~-g-~ 92 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP-----TGPVIYLPAEDPP---TAIHHRLHAL-G-A 92 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC-----CCCEEEEESSSCH---HHHHHHHHHH-H-T
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC-----CccEEEEECCCCH---HHHHHHHHHH-H-h
Confidence 478999999999999999999999998654 46653 3443311 2357787765321 0111111110 0 1
Q ss_pred CCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCC--CCCHHHH---HHHHHHHHH
Q psy7366 448 NVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTS--GMDPGAR---RFLWTCIER 522 (566)
Q Consensus 448 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~--gLD~~~~---~~l~~~l~~ 522 (566)
... .....++++.+.+.+..++++..||+||+|++ ++++.+|+++|+||||+ ++|+... ..+++.|.+
T Consensus 93 ~~~----~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~ 165 (279)
T 1nlf_A 93 HLS----AEERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEA 165 (279)
T ss_dssp TSC----HHHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHH
T ss_pred hcC----hhhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHH
Confidence 111 12345678888888778889999999998765 68888999999999999 9998544 778888888
Q ss_pred HHh-CCcEEEEEccCHHHHH
Q psy7366 523 AVS-EGRCVILTSHNMEECE 541 (566)
Q Consensus 523 ~~~-~g~tvl~vsHd~~~~~ 541 (566)
+++ .|+|||++||+.....
T Consensus 166 l~~~~g~tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 166 IAADTGCSIVFLHHASKGAA 185 (279)
T ss_dssp HHHHHCCEEEEEEEC-----
T ss_pred HHHHcCCEEEEEecCCCccc
Confidence 864 4999999999987653
No 162
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.70 E-value=2.4e-18 Score=178.53 Aligned_cols=135 Identities=19% Similarity=0.161 Sum_probs=97.1
Q ss_pred ceeeeeeE-------EEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCC-ccEEEEcCccCCCchHHhcCceEEEecCCCCC
Q psy7366 360 PAVNQISF-------GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT-SGNAYVMNHSIRDSMDLVRSYIGYCPQFDALN 431 (566)
Q Consensus 360 ~~l~~isl-------~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~-~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~ 431 (566)
+.|+++.+ .+.+|++++|+||||||||||+++|+|+++|+ .|.|...+.++... .+...++++|.....
T Consensus 104 ~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~---~~~~~~~v~q~~~~~ 180 (356)
T 3jvv_A 104 LTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFV---HESKKCLVNQREVHR 180 (356)
T ss_dssp CCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSC---CCCSSSEEEEEEBTT
T ss_pred CCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhh---hhccccceeeeeecc
Confidence 34555554 67899999999999999999999999999987 56766555444221 122345566543211
Q ss_pred CCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH
Q psy7366 432 DRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG 511 (566)
Q Consensus 432 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~ 511 (566)
...+..+ +||+||..+|++||+|||| |..
T Consensus 181 ~~~~~~~------------------------------------------------~La~aL~~~PdvillDEp~---d~e 209 (356)
T 3jvv_A 181 DTLGFSE------------------------------------------------ALRSALREDPDIILVGEMR---DLE 209 (356)
T ss_dssp TBSCHHH------------------------------------------------HHHHHTTSCCSEEEESCCC---SHH
T ss_pred ccCCHHH------------------------------------------------HHHHHhhhCcCEEecCCCC---CHH
Confidence 1112111 9999999999999999999 665
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECC
Q psy7366 512 ARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNG 553 (566)
Q Consensus 512 ~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G 553 (566)
..+ .+.+++..|.+||+++|+.+.+ ..|||++.|..|
T Consensus 210 ~~~----~~~~~~~~G~~vl~t~H~~~~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 210 TIR----LALTAAETGHLVFGTLHTTSAA-KTIDRVVDVFPA 246 (356)
T ss_dssp HHH----HHHHHHHTTCEEEEEESCSSHH-HHHHHHHHTSCH
T ss_pred HHH----HHHHHHhcCCEEEEEEccChHH-HHHHHHhhhcCc
Confidence 543 3444566799999999999887 679999887544
No 163
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.68 E-value=3.9e-18 Score=158.92 Aligned_cols=80 Identities=14% Similarity=0.067 Sum_probs=67.9
Q ss_pred cCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHH----------------HHHHHHHHHHHHHhCCC
Q psy7366 78 FALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG----------------ARRFLWTCIERAVSEGR 141 (566)
Q Consensus 78 ~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~----------------~~~~l~~~l~~l~~~g~ 141 (566)
.|.....+. ....|+|||||++||+|++.+|++|+|||||++||+. .+..+.+.|++++++|.
T Consensus 72 ~g~~~~~~~-~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~ 150 (171)
T 4gp7_A 72 LGKLTVVDA-TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGF 150 (171)
T ss_dssp TTCCEEEES-CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTC
T ss_pred CCCeEEEEC-CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCC
Confidence 454433332 3456999999999999999999999999999999999 67999999998877799
Q ss_pred EEEEecCChhHHHhhcCE
Q psy7366 142 CVILTSHNMEECEALCTK 159 (566)
Q Consensus 142 tviiisH~~~~~~~~~d~ 159 (566)
|+|++|||++++.. +++
T Consensus 151 tvi~vtH~~~~~~~-~~~ 167 (171)
T 4gp7_A 151 RYVYILNSPEEVEE-VVF 167 (171)
T ss_dssp SEEEEECSHHHHHH-EEE
T ss_pred cEEEEeCCHHHhhh-hhh
Confidence 99999999999976 344
No 164
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.68 E-value=1e-18 Score=184.64 Aligned_cols=164 Identities=13% Similarity=0.040 Sum_probs=99.5
Q ss_pred eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCce
Q psy7366 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI 421 (566)
Q Consensus 342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i 421 (566)
++.++||++.|+ ++.+++++||+| +|+|+||||||||+++|+|...++.|. +|..+..........+
T Consensus 11 ~l~~~~l~~~y~----~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~---~~~~~~~~~t~~~~~i 77 (418)
T 2qag_C 11 YVGFANLPNQVY----RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEY---PGPSHRIKKTVQVEQS 77 (418)
T ss_dssp ----CCCCCCTT----TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCC---CSCC-----CCEEEEE
T ss_pred cEEEEecceeEC----CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCC---CCcccCCccceeeeeE
Confidence 588999999996 567999999998 999999999999999999998865551 2222211111113458
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCC---E
Q psy7366 422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP---L 498 (566)
Q Consensus 422 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~---l 498 (566)
+|++|++.+++.+|+.||+.+...... ......+.+.++ ..++.+++||+.|||+++.+|+ +
T Consensus 78 ~~v~q~~~~~~~Ltv~Dt~g~~~~~~~---~~~~~~i~~~i~------------~~~~~~l~qr~~IaRal~~d~~~~vl 142 (418)
T 2qag_C 78 KVLIKEGGVQLLLTIVDTPGFGDAVDN---SNCWQPVIDYID------------SKFEDYLNAESRVNRRQMPDNRVQCC 142 (418)
T ss_dssp ECC------CEEEEEEECC--------------CHHHHHHHH------------HHHHHHTTTSCC-CCCCCCCC-CCEE
T ss_pred EEEEecCCcccceeeeechhhhhhccc---hhhHHHHHHHHH------------HHHHHHHHHHHHHHHHhccCCCeeEE
Confidence 999998888878899888766432111 000011112221 1455677889999999999999 9
Q ss_pred EEEeCCC-CCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHH
Q psy7366 499 IFLDEPT-SGMDPGARRFLWTCIERAVSEGRCVILTSHNME 538 (566)
Q Consensus 499 llLDEPt-~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~ 538 (566)
|++|||| .+||+... ++++.+.. +.+||+|.|-.+
T Consensus 143 L~ldePt~~~L~~~d~----~~lk~L~~-~v~iIlVinK~D 178 (418)
T 2qag_C 143 LYFIAPSGHGLKPLDI----EFMKRLHE-KVNIIPLIAKAD 178 (418)
T ss_dssp EEECCC-CCSCCHHHH----HHHHHHTT-TSEEEEEEESTT
T ss_pred EEEecCcccCCCHHHH----HHHHHHhc-cCcEEEEEEccc
Confidence 9999999 69998874 33445443 678888877654
No 165
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.67 E-value=1.2e-18 Score=168.93 Aligned_cols=141 Identities=16% Similarity=0.139 Sum_probs=96.8
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC--CccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCH----HHHHH
Q psy7366 368 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKP--TSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTP----REHLE 441 (566)
Q Consensus 368 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv----~e~l~ 441 (566)
..++|++++|+||||||||||+++|+|+++| ..|.|.+.+++... ..+..++|+||++..|+.+++ .||+.
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~---~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~ 88 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP---GEVHGEHYFFVNHDEFKEMISRDAFLEHAE 88 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT---TCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc---ccccCceEEECCHHHHHHHHhcCHHHHHHH
Confidence 5689999999999999999999999999986 68999998876532 124579999997655444333 22222
Q ss_pred HHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy7366 442 FYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIE 521 (566)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 521 (566)
+....++. .++. +..++..++++||| ||+.++..+++.+.
T Consensus 89 ~~~~~yg~--------------------------------~~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~ 128 (219)
T 1s96_A 89 VFGNYYGT--------------------------------SREA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP 128 (219)
T ss_dssp ETTEEEEE--------------------------------EHHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT
T ss_pred HHhccCCC--------------------------------CHHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc
Confidence 11111111 1111 23334457999999 99999999988775
Q ss_pred HHHhCCcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366 522 RAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564 (566)
Q Consensus 522 ~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l 564 (566)
++.+|+++||+++++.. |+ +.+| .++++++
T Consensus 129 ----~~~tI~i~th~~~~l~~---Rl--~~rG----~~~~e~i 158 (219)
T 1s96_A 129 ----HARSIFILPPSKIELDR---RL--RGRG----QDSEEVI 158 (219)
T ss_dssp ----TCEEEEEECSSHHHHHH---HH--HTTS----CSCHHHH
T ss_pred ----CCEEEEEECCCHHHHHH---HH--HHcC----CCCHHHH
Confidence 58999999999998876 32 5566 4455443
No 166
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.67 E-value=6.2e-17 Score=167.47 Aligned_cols=80 Identities=34% Similarity=0.471 Sum_probs=73.4
Q ss_pred cccccccCChhHHH------HHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhc
Q psy7366 84 SDREVRTLSGGNKR------KLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALC 157 (566)
Q Consensus 84 ~~~~~~~LSgG~kq------rl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~ 157 (566)
.++++.+||||||| |+++|++|+.+|++|||||||++||+..+..+.++|+++.+.|.|||+|||+. ++.+.|
T Consensus 242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~-~~~~~~ 320 (339)
T 3qkt_A 242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-ELKDAA 320 (339)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG-GGGGGC
T ss_pred CcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH-HHHHhC
Confidence 46789999999999 67888899999999999999999999999999999999877789999999995 567899
Q ss_pred CEEEEEe
Q psy7366 158 TKLTIMV 164 (566)
Q Consensus 158 d~i~vl~ 164 (566)
|+|++|+
T Consensus 321 d~~~~l~ 327 (339)
T 3qkt_A 321 DHVIRIS 327 (339)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999996
No 167
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.67 E-value=4.7e-21 Score=200.54 Aligned_cols=176 Identities=10% Similarity=0.031 Sum_probs=112.0
Q ss_pred eeeeeEEEeC--CcEEEEEcCCCCcHHHHHHHHHCCCCCCc----cEEEEcC----ccCCCchHHhcCceEEEecCCCCC
Q psy7366 362 VNQISFGVGR--GECFGLLGLNGAGKTTTFKMLTGAIKPTS----GNAYVMN----HSIRDSMDLVRSYIGYCPQFDALN 431 (566)
Q Consensus 362 l~~isl~i~~--Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~----G~i~~~g----~~~~~~~~~~~~~i~~v~q~~~l~ 431 (566)
.+.|+++|.+ |+.++|+||||||||||+++|+|+++|++ |+|++++ .++......+ ..|+|++|++.++
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~~~~ 236 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRYIDY 236 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHHHHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHHHHH
Confidence 4578999999 99999999999999999999999999999 7776642 2210000001 1133332221100
Q ss_pred CCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHc-CCCCEEEEeC---CC--
Q psy7366 432 DRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL-GNPPLIFLDE---PT-- 505 (566)
Q Consensus 432 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~-~~p~lllLDE---Pt-- 505 (566)
. .|+.+|+.+ ++ .+..+..+..+|+|++|+..+++++. .+|++++||| |+
T Consensus 237 ~-~t~~~nl~~----------------------~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~ 292 (365)
T 1lw7_A 237 A-VRHSHKIAF----------------------ID-TDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVD 292 (365)
T ss_dssp H-HHHCSSEEE----------------------ES-SCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC---
T ss_pred H-HhccCCEEE----------------------Ee-CCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCccc
Confidence 0 111111100 00 11222334456777788888888774 7999999999 65
Q ss_pred ----CCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEEEEECCEEEEecCccccc
Q psy7366 506 ----SGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 565 (566)
Q Consensus 506 ----~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~~l~~G~i~~~g~~~~l~ 565 (566)
.++|+..+..+.+.|.++.++ |.+||+++|. ++..++|+++.++++ +...+++++++
T Consensus 293 ~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i~~--~l~~~~~~~~~ 354 (365)
T 1lw7_A 293 DGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVIEK--VLNEEEISELQ 354 (365)
T ss_dssp --------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHHHH--HTSCCCCSSCC
T ss_pred CCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHH--HhcccchhHhh
Confidence 589999999999999887654 8999999986 566778887766653 44455555553
No 168
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.67 E-value=2.9e-20 Score=178.86 Aligned_cols=151 Identities=11% Similarity=0.036 Sum_probs=113.2
Q ss_pred CCcchHHHHHhccccCCCccC----CCCCcccccccceeEEcCCCCCCCCCCHHHHHHHH----H--HhcCCChhhHHHH
Q psy7366 1 MGLTTTPKRVVTLLLTTQKVP----GSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFY----S--RVRNVPSVLLNTI 70 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~~~~----~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~----~--~~~~~~~~~~~~~ 70 (566)
.||||++|+++|++. .-... +..+. .....+++|++|++.+++.+|+.+++.++ . ..++.+..+..++
T Consensus 31 sGKSTLl~~l~gl~~-~i~~~~~~~~~~~~-~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~~~~~n~~~~g~~~~~~~~~ 108 (207)
T 1znw_A 31 VGKSTVVRCLRERIP-NLHFSVSATTRAPR-PGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAA 108 (207)
T ss_dssp SSHHHHHHHHHHHST-TCEECCCEESSCCC-TTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEEEEEEHHHHHHH
T ss_pred CCHHHHHHHHHhhCC-ceEEcccccccCCc-ccccCCCeeEecCHHHHHHHHhcCCceeehhhcCchhhcCCcHHHHHHH
Confidence 599999999999873 11111 11111 11235799999999888777877776322 1 2234455556666
Q ss_pred HHHH------HHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCC----CHHHHHHHHHHHHHHHh-C
Q psy7366 71 VNES------LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGM----DPGARRFLWTCIERAVS-E 139 (566)
Q Consensus 71 ~~~~------l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~L----D~~~~~~l~~~l~~l~~-~ 139 (566)
+.+. ++.+|+....++++.+|| +|+.+|++++|||||++| |+..+++++++++++++ .
T Consensus 109 ~~~~~~~~~~l~~~gl~~~~~~~~~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~ 177 (207)
T 1znw_A 109 AATGVPVLIEVDLAGARAIKKTMPEAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQG 177 (207)
T ss_dssp HHHTCCEEEECCHHHHHHHHHHCTTSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGG
T ss_pred HHcCCeEEEEeCHHHHHHHHHhcCCcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhc
Confidence 6665 666677666677888888 899999999999999998 78899999999999964 5
Q ss_pred CCEEEEecCChhHHHhhcCEEEEEe
Q psy7366 140 GRCVILTSHNMEECEALCTKLTIMV 164 (566)
Q Consensus 140 g~tviiisH~~~~~~~~~d~i~vl~ 164 (566)
|.|+|++|||++++..+||||++|.
T Consensus 178 g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 178 DFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp GSSEEEECSSHHHHHHHHHHHHC--
T ss_pred cCcEEEECCCHHHHHHHHHHHHHhc
Confidence 8999999999999999999999984
No 169
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.65 E-value=5.8e-21 Score=180.71 Aligned_cols=172 Identities=19% Similarity=0.152 Sum_probs=114.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCc
Q psy7366 372 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPS 451 (566)
Q Consensus 372 Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~ 451 (566)
|++++|+||||||||||+++|++ +.+|.+.++|.++.. ...+++++|....++..++++++.+.........
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 73 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINH-----MVVGGYRPPWESDELLALTWKNITDLTVNFLLAQ 73 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHT-----TCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhh-----hhccccccCccchhHHHHHHHHHHHHHHHHHhcC
Confidence 68999999999999999999997 668999999876422 1235677776544444577777765432110000
Q ss_pred hHHHHHHHHHHHHcCCCCccccCcCcC--ChhHHHHHHHHH------HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy7366 452 VLLNTIVNESLNKFALGHYSDREVRTL--SGGNKRKLSTAI------ALLGNPPLIFLDEPTSGMDPGARRFLWTCIERA 523 (566)
Q Consensus 452 ~~~~~~~~~~l~~~~l~~~~~~~~~~L--SgGqkqrv~la~------al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 523 (566)
. ..+++.+. .....+....+ |+|++|++.++. +++.+|+...+|+ ++|+..+.. ++.+..+
T Consensus 74 ~------~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~ 142 (189)
T 2bdt_A 74 N------DVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESK 142 (189)
T ss_dssp C------EEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHT
T ss_pred C------cEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhc
Confidence 0 00011010 00011222344 889988888887 8888888888884 899988888 8888887
Q ss_pred HhCCcEEEEEccC-HHHHHhhCCEEEEEECCEEEEecCcccc
Q psy7366 524 VSEGRCVILTSHN-MEECEALCTKLTIMVNGQFTCLGSATHL 564 (566)
Q Consensus 524 ~~~g~tvl~vsHd-~~~~~~~~drv~~l~~G~i~~~g~~~~l 564 (566)
.+.+.++|.+||. ++++.++||+|+ ++|+++.+|+++-+
T Consensus 143 ~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 143 GIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp TCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC------
T ss_pred CCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCch
Confidence 6567899999999 999999999998 99999999988754
No 170
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.65 E-value=7e-16 Score=143.58 Aligned_cols=83 Identities=17% Similarity=0.197 Sum_probs=71.5
Q ss_pred cccccccCChhHHHHHHHHHHHh----CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhcCE
Q psy7366 84 SDREVRTLSGGNKRKLSTAIALL----GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTK 159 (566)
Q Consensus 84 ~~~~~~~LSgG~kqrl~iA~al~----~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~d~ 159 (566)
..+.+..||||||||++||++|+ .+|+++||||||++||+..+..+.++|+++.+ +.++|+|||+... ...||+
T Consensus 58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~~~-~~~ad~ 135 (173)
T 3kta_B 58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRDVM-MANADK 135 (173)
T ss_dssp SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCHHH-HTTCSE
T ss_pred cccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecHHH-HHhCCE
Confidence 35678999999999999999997 45799999999999999999999999999854 5789999999754 578999
Q ss_pred EEEE--eCCEE
Q psy7366 160 LTIM--VNGQF 168 (566)
Q Consensus 160 i~vl--~~G~i 168 (566)
++.+ ++|..
T Consensus 136 i~~v~~~~g~s 146 (173)
T 3kta_B 136 IIGVSMRDGVS 146 (173)
T ss_dssp EEEEEEETTEE
T ss_pred EEEEEecCCEE
Confidence 9855 56754
No 171
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.64 E-value=2.4e-18 Score=181.32 Aligned_cols=145 Identities=13% Similarity=0.022 Sum_probs=112.4
Q ss_pred CCcchHHHHHhccccCCCc-cCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHHcC
Q psy7366 1 MGLTTTPKRVVTLLLTTQK-VPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFA 79 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~~-~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g 79 (566)
.||||++|+++|++.+.+. +..... ... +.++++|++ .++.+|+.|++.+.. + ..+++++++.++
T Consensus 80 aGKSTLln~L~Gl~~p~~GsI~~~g~--~~t--~~~~v~q~~-~~~~ltv~D~~g~~~-----~----~~~~~~~L~~~~ 145 (413)
T 1tq4_A 80 SGKSSFINTLRGIGNEEEGAAKTGVV--EVT--MERHPYKHP-NIPNVVFWDLPGIGS-----T----NFPPDTYLEKMK 145 (413)
T ss_dssp SSHHHHHHHHHTCCTTSTTSCCCCC--------CCCEEEECS-SCTTEEEEECCCGGG-----S----SCCHHHHHHHTT
T ss_pred CcHHHHHHHHhCCCCccCceEEECCe--ecc--eeEEecccc-ccCCeeehHhhcccc-----h----HHHHHHHHHHcC
Confidence 5999999999999876552 211111 111 238899985 467888888775431 1 234678899999
Q ss_pred CCcccccccccCChh--HHHHHHHHHHHhC----------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHH-----hCC--
Q psy7366 80 LGHYSDREVRTLSGG--NKRKLSTAIALLG----------NPPLIFLDEPTSGMDPGARRFLWTCIERAV-----SEG-- 140 (566)
Q Consensus 80 l~~~~~~~~~~LSgG--~kqrl~iA~al~~----------~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~-----~~g-- 140 (566)
+... +..+. ||+| |+||++||+||++ +|++++|||||++||+..++++++.|+++. +.|
T Consensus 146 L~~~-~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~ 223 (413)
T 1tq4_A 146 FYEY-DFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIA 223 (413)
T ss_dssp GGGC-SEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCS
T ss_pred CCcc-CCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 8754 33444 9999 9999999999999 999999999999999999999999999984 333
Q ss_pred --CEEEEecCChhH--HHhhcCEEE
Q psy7366 141 --RCVILTSHNMEE--CEALCTKLT 161 (566)
Q Consensus 141 --~tviiisH~~~~--~~~~~d~i~ 161 (566)
.+|+++||++++ ++++||+|.
T Consensus 224 ~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 224 EPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp SCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred CCcEEEEecCcCCccCHHHHHHHHH
Confidence 578899999998 999999985
No 172
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.64 E-value=3.1e-18 Score=180.36 Aligned_cols=179 Identities=15% Similarity=0.139 Sum_probs=116.7
Q ss_pred eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcE--EEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhc
Q psy7366 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGEC--FGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVR 418 (566)
Q Consensus 342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~--~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~ 418 (566)
.+++.+ ++.|+ +.+ |+++||+|++|++ ++|+||||||||||+++|+|+. ++|.++.. .....+
T Consensus 16 ~l~~~~-~~~y~----~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~ 81 (427)
T 2qag_B 16 TVPLAG-HVGFD----SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQL 81 (427)
T ss_dssp -CCCCC-CC-CC------C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEE
T ss_pred eEEEee-EEEEC----Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceE
Confidence 356666 77785 455 9999999999999 9999999999999999999984 22333221 111224
Q ss_pred CceEEEecCCCCCCCCCHHHHHHHHHHhcC-C-Cc---hHHHHHHHHHHHHc-CCCC----ccccCc-----------Cc
Q psy7366 419 SYIGYCPQFDALNDRLTPREHLEFYSRVRN-V-PS---VLLNTIVNESLNKF-ALGH----YSDREV-----------RT 477 (566)
Q Consensus 419 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~-~-~~---~~~~~~~~~~l~~~-~l~~----~~~~~~-----------~~ 477 (566)
..++|++|++.+++.+|+.||+.++..... . .. ......+.+++... ++.. ..+.++ ..
T Consensus 82 ~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~ 161 (427)
T 2qag_B 82 QSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS 161 (427)
T ss_dssp EEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC--
T ss_pred eeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC
Confidence 479999999888888899888765421100 0 00 01233455566654 4431 122221 24
Q ss_pred CChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCcEEEEEccCH
Q psy7366 478 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER-AVSEGRCVILTSHNM 537 (566)
Q Consensus 478 LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~-~~~~g~tvl~vsHd~ 537 (566)
|+-.+ +.++++|..+++++++|||+..|.+.....+.+.+++ +...|.+|+.+|.|-
T Consensus 162 l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d 219 (427)
T 2qag_B 162 LKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTDD 219 (427)
T ss_dssp -CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC---
T ss_pred CCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCCc
Confidence 55555 7899999999999999999999999999999999986 767799999999764
No 173
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.63 E-value=6.6e-19 Score=173.88 Aligned_cols=144 Identities=16% Similarity=0.102 Sum_probs=105.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHH---CCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHH--
Q psy7366 371 RGECFGLLGLNGAGKTTTFKMLT---GAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSR-- 445 (566)
Q Consensus 371 ~Ge~~~l~G~NGsGKSTLl~~i~---G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~-- 445 (566)
++++++|+||||||||||+++|+ |+..|+.|+|.++|.+... .....+.+++|+..+++..++.+++.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAST---EVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTC---HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCC---hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47999999999999999999999 9999999999888765322 112235566777777888899999876432
Q ss_pred ------hcCCCchHHHHHHHHHHH--HcC------------CCCccccCcCcCChhHHHHHHHHHHH-cCCCCEEEEe--
Q psy7366 446 ------VRNVPSVLLNTIVNESLN--KFA------------LGHYSDREVRTLSGGNKRKLSTAIAL-LGNPPLIFLD-- 502 (566)
Q Consensus 446 ------~~~~~~~~~~~~~~~~l~--~~~------------l~~~~~~~~~~LSgGqkqrv~la~al-~~~p~lllLD-- 502 (566)
+.+.+... ..+..+.. .++ +....++++.+||| |+ +++ +.+|++++||
T Consensus 103 ~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~ 173 (246)
T 2bbw_A 103 RGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDV 173 (246)
T ss_dssp TTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTT
T ss_pred CCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccccc
Confidence 12233222 12222221 122 22335678899999 55 677 9999999999
Q ss_pred --CCCCCCCHHHHHHHHHHHHHHHhC
Q psy7366 503 --EPTSGMDPGARRFLWTCIERAVSE 526 (566)
Q Consensus 503 --EPt~gLD~~~~~~l~~~l~~~~~~ 526 (566)
|||++||+.+++.+.+.++++.++
T Consensus 174 ~~EP~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 174 TGEPLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp TCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred cccccccCCCCcHHHHHHHHHHHHHh
Confidence 999999999999999999887654
No 174
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.63 E-value=1.2e-15 Score=141.95 Aligned_cols=82 Identities=17% Similarity=0.211 Sum_probs=71.0
Q ss_pred cccCcCcCChhHHHHHHHHHHHc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCE
Q psy7366 471 SDREVRTLSGGNKRKLSTAIALL----GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTK 546 (566)
Q Consensus 471 ~~~~~~~LSgGqkqrv~la~al~----~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~dr 546 (566)
..+++..||||||||++||++|+ .+|+++||||||+|||+.++..+.++|+++.+ +.++|++||+... ..+||+
T Consensus 58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~~~-~~~ad~ 135 (173)
T 3kta_B 58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRDVM-MANADK 135 (173)
T ss_dssp SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCHHH-HTTCSE
T ss_pred cccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecHHH-HHhCCE
Confidence 35678999999999999999997 45799999999999999999999999998864 4789999999765 568999
Q ss_pred EEEE--ECCE
Q psy7366 547 LTIM--VNGQ 554 (566)
Q Consensus 547 v~~l--~~G~ 554 (566)
++.+ .+|.
T Consensus 136 i~~v~~~~g~ 145 (173)
T 3kta_B 136 IIGVSMRDGV 145 (173)
T ss_dssp EEEEEEETTE
T ss_pred EEEEEecCCE
Confidence 9865 4665
No 175
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.62 E-value=5.6e-16 Score=169.30 Aligned_cols=80 Identities=16% Similarity=0.213 Sum_probs=74.1
Q ss_pred cccccC-ChhHHHHHHHHHHHhCCC--CEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhcCEEEE
Q psy7366 86 REVRTL-SGGNKRKLSTAIALLGNP--PLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTI 162 (566)
Q Consensus 86 ~~~~~L-SgG~kqrl~iA~al~~~p--~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~d~i~v 162 (566)
+++.+| ||||+|||+||+||+.+| ++|||||||+|||+.++..+.++|+++++ |.|||+|||+++.+. .|||+++
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~~~~-~~d~~~~ 469 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQIAA-RAHHHYK 469 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHHHHH-HSSEEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHH-hCCEEEE
Confidence 467788 999999999999999999 99999999999999999999999999977 899999999998775 6999999
Q ss_pred EeCCE
Q psy7366 163 MVNGQ 167 (566)
Q Consensus 163 l~~G~ 167 (566)
|+++.
T Consensus 470 ~~~~~ 474 (517)
T 4ad8_A 470 VEKQV 474 (517)
T ss_dssp EECCE
T ss_pred Eeccc
Confidence 97654
No 176
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.62 E-value=5.1e-16 Score=149.62 Aligned_cols=153 Identities=15% Similarity=0.130 Sum_probs=100.7
Q ss_pred ceeeeeeE-EEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHH
Q psy7366 360 PAVNQISF-GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPRE 438 (566)
Q Consensus 360 ~~l~~isl-~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 438 (566)
+.|+.+.. .+++|++++|+||||||||||++.|++ ++. +. +.|+..+..+ +...
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~-~~------------------v~~i~~~~~~----~~~~ 61 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSG-KK------------------VAYVDTEGGF----SPER 61 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHC-SE------------------EEEEESSCCC----CHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcC-Cc------------------EEEEECCCCC----CHHH
Confidence 34566554 689999999999999999999999999 222 22 3344433211 2211
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhH--HHHHHHHHHHcCC-CCEEEEeCCCCCCCHHH---
Q psy7366 439 HLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGN--KRKLSTAIALLGN-PPLIFLDEPTSGMDPGA--- 512 (566)
Q Consensus 439 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq--kqrv~la~al~~~-p~lllLDEPt~gLD~~~--- 512 (566)
+.-.....+... +++++.+ .+..+|+++ ++++..+++++.+ |+++|+||||+.+|+..
T Consensus 62 -~~~~~~~~~~~~-------~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~ 125 (220)
T 2cvh_A 62 -LVQMAETRGLNP-------EEALSRF--------ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRS 125 (220)
T ss_dssp -HHHHHHTTTCCH-------HHHHHHE--------EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSS
T ss_pred -HHHHHHhcCCCh-------HHHhhcE--------EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchH
Confidence 111111111111 1122222 344556665 4678888899986 99999999999999743
Q ss_pred -----HHHHHHHHHHHHhC-CcEEEEEccCHH-------------HHHhhCCEEEEEECC
Q psy7366 513 -----RRFLWTCIERAVSE-GRCVILTSHNME-------------ECEALCTKLTIMVNG 553 (566)
Q Consensus 513 -----~~~l~~~l~~~~~~-g~tvl~vsHd~~-------------~~~~~~drv~~l~~G 553 (566)
...+.+.|++++++ |.|||+++|... .+..+||++++|+..
T Consensus 126 ~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 126 GLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 24455567777655 899999999865 567899999999754
No 177
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.60 E-value=2e-16 Score=154.84 Aligned_cols=146 Identities=18% Similarity=0.222 Sum_probs=85.2
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHC--CCCC-----CccEEEEcCccCCCc--hHHhcCceEEEecCCCCCCCCCHHH
Q psy7366 368 GVGRGECFGLLGLNGAGKTTTFKMLTG--AIKP-----TSGNAYVMNHSIRDS--MDLVRSYIGYCPQFDALNDRLTPRE 438 (566)
Q Consensus 368 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G--~~~~-----~~G~i~~~g~~~~~~--~~~~~~~i~~v~q~~~l~~~~tv~e 438 (566)
-|++|++++|+||||||||||++.|++ +.+| ..|.++++++..... .....+.+++.+|+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~----------- 88 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD----------- 88 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-----------
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-----------
Confidence 479999999999999999999999999 5665 466777776542110 11111222322211
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHH-HHHHHHH--cCCCCEEEEeCCCCCCCHH----
Q psy7366 439 HLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRK-LSTAIAL--LGNPPLIFLDEPTSGMDPG---- 511 (566)
Q Consensus 439 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqr-v~la~al--~~~p~lllLDEPt~gLD~~---- 511 (566)
+++.+. ....++..+... +.-+..+ ..+|+++++|||++.+|+.
T Consensus 89 ----------------------~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~ 139 (243)
T 1n0w_A 89 ----------------------VLDNVA-------YARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGR 139 (243)
T ss_dssp ----------------------HHHTEE-------EEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC------
T ss_pred ----------------------HhhCeE-------EEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCC
Confidence 111110 011223333222 1112222 2689999999999999985
Q ss_pred ---H-----HHHHHHHHHHHHhC-CcEEEEEccCHHHHHh-------------------hCCEEEEEECC
Q psy7366 512 ---A-----RRFLWTCIERAVSE-GRCVILTSHNMEECEA-------------------LCTKLTIMVNG 553 (566)
Q Consensus 512 ---~-----~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~-------------------~~drv~~l~~G 553 (566)
. ...++..|.+++++ |.|||+++|....... +||++++|+.|
T Consensus 140 ~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 140 GELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 3 34455556666554 9999999997765543 79999999865
No 178
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.60 E-value=2.2e-18 Score=162.82 Aligned_cols=152 Identities=13% Similarity=0.029 Sum_probs=97.9
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhc
Q psy7366 368 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVR 447 (566)
Q Consensus 368 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~ 447 (566)
.+++|++++|+||||||||||+++|+|. ++.|.|.++|.++.... ..+..++|++|+.. +..++.+|+.+.....
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~-~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~ 79 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYI-KHGRIDPWLPQSHQ--QNRMIMQIAADVAGRY 79 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTC-CSSCCCTTSSSHHH--HHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhh-hcccccCCccchhh--hhHHHHHHHHHHHHHH
Confidence 4789999999999999999999999998 77899999987642110 01234577777543 3467888876543211
Q ss_pred CCCchHHHHHHHHHHHHcCCCCcc--ccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy7366 448 NVPSVLLNTIVNESLNKFALGHYS--DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS 525 (566)
Q Consensus 448 ~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~ 525 (566)
...... ..++.++..+++.... +.++..+|+|++|++.++|++..+|+++ +|+...+.+++.+..+..
T Consensus 80 ~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~ 149 (191)
T 1zp6_A 80 AKEGYF--VILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLGA 149 (191)
T ss_dssp HHTSCE--EEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGG
T ss_pred hccCCe--EEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccCc
Confidence 000000 0000011111221111 4467789999999999999999999876 688888888887766543
Q ss_pred CCcEEEEEc
Q psy7366 526 EGRCVILTS 534 (566)
Q Consensus 526 ~g~tvl~vs 534 (566)
.+..+|.++
T Consensus 150 ~~~~~i~t~ 158 (191)
T 1zp6_A 150 FEHHVLPVS 158 (191)
T ss_dssp GGGGEEECT
T ss_pred ccccEEECC
Confidence 333344444
No 179
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.60 E-value=7.7e-16 Score=159.66 Aligned_cols=86 Identities=20% Similarity=0.286 Sum_probs=78.3
Q ss_pred ccccc-cCChhHHHHHHHHHHHh---------CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHH
Q psy7366 85 DREVR-TLSGGNKRKLSTAIALL---------GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECE 154 (566)
Q Consensus 85 ~~~~~-~LSgG~kqrl~iA~al~---------~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~ 154 (566)
++++. .||||||||++||++|+ .+|+||||||||++||+..+..|.+.|.++. .|+|++||. ++
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~~-- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-AP-- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-CT--
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-cc--
Confidence 56787 89999999999999999 8999999999999999999999999998763 699999994 44
Q ss_pred hhcCEEEEEeCCEEEEecChhHH
Q psy7366 155 ALCTKLTIMVNGQFTCLGSATHL 177 (566)
Q Consensus 155 ~~~d~i~vl~~G~i~~~g~~~~~ 177 (566)
.||++++|++|+++..|+++++
T Consensus 333 -~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 -GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp -TCSEEEEEETTEEEECCCTTTS
T ss_pred -cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999988764
No 180
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.59 E-value=1.1e-16 Score=167.31 Aligned_cols=129 Identities=19% Similarity=0.203 Sum_probs=97.8
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCC-ccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHH
Q psy7366 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT-SGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREH 439 (566)
Q Consensus 361 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~-~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~ 439 (566)
+|++++ +++|++++|+||||||||||+++|+|+++|+ +|+|.+.+.++.. ..+..++|++|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~---~~~~~~~~v~Q~~----------- 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEY---VFKHKKSIVNQRE----------- 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCS---CCCCSSSEEEEEE-----------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhh---hhccCceEEEeee-----------
Confidence 566665 7899999999999999999999999999997 8999887766532 2355688888841
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy7366 440 LEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTC 519 (566)
Q Consensus 440 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~ 519 (566)
+++. +..| +.+|+++|..+|++|++|||+ |+.... ..
T Consensus 191 -------------------------~g~~------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~---~~ 227 (372)
T 2ewv_A 191 -------------------------VGED------TKSF------ADALRAALREDPDVIFVGEMR---DLETVE---TA 227 (372)
T ss_dssp -------------------------BTTT------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHH---HH
T ss_pred -------------------------cCCC------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHH---HH
Confidence 1211 1233 468999999999999999999 776543 33
Q ss_pred HHHHHhCCcEEEEEccCHHHHHhhCCEEEEE
Q psy7366 520 IERAVSEGRCVILTSHNMEECEALCTKLTIM 550 (566)
Q Consensus 520 l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l 550 (566)
++. +..|.+|+.++|+.+ +...|||++.|
T Consensus 228 l~~-~~~g~~vi~t~H~~~-~~~~~~rl~~l 256 (372)
T 2ewv_A 228 LRA-AETGHLVFGTLHTNT-AIDTIHRIVDI 256 (372)
T ss_dssp HHH-HTTTCEEEECCCCCS-HHHHHHHHHHT
T ss_pred HHH-HhcCCEEEEEECcch-HHHHHHHHHHh
Confidence 443 345899999999955 66777876544
No 181
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.58 E-value=5.2e-16 Score=159.15 Aligned_cols=166 Identities=10% Similarity=-0.007 Sum_probs=116.9
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCch--H-----HhcCceEEEecCCCCCCCCCHHHHH
Q psy7366 368 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM--D-----LVRSYIGYCPQFDALNDRLTPREHL 440 (566)
Q Consensus 368 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~--~-----~~~~~i~~v~q~~~l~~~~tv~e~l 440 (566)
..++|++++|+||||||||||+++|+|+++|++|+|.+.|.++.... . ..+..+.|++|...+++.+++++|+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 34789999999999999999999999999999999999999885421 1 1234567999999898989999999
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHH
Q psy7366 441 EFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCI 520 (566)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l 520 (566)
.+..... ... -+++..|..+.....+.+|| .+++++..++.+++||.++. . .+.+.+
T Consensus 205 ~~~~~~~-~d~--------vliDtaG~~~~~~~l~~eL~-------~i~ral~~de~llvLDa~t~-~------~~~~~~ 261 (328)
T 3e70_C 205 QHAKARG-IDV--------VLIDTAGRSETNRNLMDEMK-------KIARVTKPNLVIFVGDALAG-N------AIVEQA 261 (328)
T ss_dssp HHHHHHT-CSE--------EEEEECCSCCTTTCHHHHHH-------HHHHHHCCSEEEEEEEGGGT-T------HHHHHH
T ss_pred HHHHhcc-chh--------hHHhhccchhHHHHHHHHHH-------HHHHHhcCCCCEEEEecHHH-H------HHHHHH
Confidence 7653211 000 01223344333334444554 38899998888889995554 3 444555
Q ss_pred HHHHh-CCcEEEEEccCH---------HHHHhhCCEEEEEECCEEE
Q psy7366 521 ERAVS-EGRCVILTSHNM---------EECEALCTKLTIMVNGQFT 556 (566)
Q Consensus 521 ~~~~~-~g~tvl~vsHd~---------~~~~~~~drv~~l~~G~i~ 556 (566)
+.+.+ .+.|+|++||.- ..+....-.|.++..|+-+
T Consensus 262 ~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 262 RQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp HHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred HHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 66654 489999999953 2334455678888888643
No 182
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.58 E-value=5.6e-19 Score=181.20 Aligned_cols=160 Identities=14% Similarity=0.047 Sum_probs=106.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHCCC--------CCCccEEEEcCccCCCc----------------hHHhcCceEEE---e
Q psy7366 373 ECFGLLGLNGAGKTTTFKMLTGAI--------KPTSGNAYVMNHSIRDS----------------MDLVRSYIGYC---P 425 (566)
Q Consensus 373 e~~~l~G~NGsGKSTLl~~i~G~~--------~~~~G~i~~~g~~~~~~----------------~~~~~~~i~~v---~ 425 (566)
++++|+|+||||||||+|+|.|+. .|+.|+|.++|.++... ...++..++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999997 78999999999877432 12234457777 6
Q ss_pred cCCCCCCCCCHHHHHHHHH--H----hcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEE
Q psy7366 426 QFDALNDRLTPREHLEFYS--R----VRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLI 499 (566)
Q Consensus 426 q~~~l~~~~tv~e~l~~~~--~----~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~ll 499 (566)
|++.++++.++.||..++. . +...+.......+..++..+++.+..++.. +||+||+||+..+++++.+|+++
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~-~ls~g~~Q~~~ad~ill~k~dl~ 163 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN-QFTIAQSQVGYADRILLTKTDVA 163 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH-HCHHHHHHHHTCSEEEEECTTTC
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh-hchHHHHHHHhCCEEEEECcccC
Confidence 7766556667777654320 0 000000000000111223334444433333 79999999998888888888887
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCC
Q psy7366 500 FLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCT 545 (566)
Q Consensus 500 lLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~d 545 (566)
||| ..+.+.|+++. .+.+|+++||+...+..+.|
T Consensus 164 --de~---------~~l~~~l~~l~-~~~~ii~~sh~~~~~~~l~~ 197 (318)
T 1nij_A 164 --GEA---------EKLHERLARIN-ARAPVYTVTHGDIDLGLLFN 197 (318)
T ss_dssp --SCT---------HHHHHHHHHHC-SSSCEEECCSSCCCGGGGSC
T ss_pred --CHH---------HHHHHHHHHhC-CCCeEEEecccCCCHHHHhC
Confidence 888 67778887764 58999999997555554443
No 183
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.57 E-value=2e-16 Score=168.53 Aligned_cols=158 Identities=13% Similarity=0.115 Sum_probs=108.8
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCch-----HH--hcCceEEEecCCCCCCCC
Q psy7366 362 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM-----DL--VRSYIGYCPQFDALNDRL 434 (566)
Q Consensus 362 l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-----~~--~~~~i~~v~q~~~l~~~~ 434 (566)
-+++||++.+|++++|+|+||||||||+++|+|++++++|+|.+.|.+..... .. .+.+++|++|+..+++.+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 46889999999999999999999999999999999999999999887765421 11 356799999998888888
Q ss_pred CHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHc-CCC-CEEEEeCCCCCCCHHH
Q psy7366 435 TPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL-GNP-PLIFLDEPTSGMDPGA 512 (566)
Q Consensus 435 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~-~~p-~lllLDEPt~gLD~~~ 512 (566)
++++|+.+... .+..- -+++..|..+.......+| +|++.+++++. ..| .+||...|++|.|...
T Consensus 363 tV~e~l~~a~~-~~~Dv--------VLIDTaGrl~~~~~lm~EL----~kiv~iar~l~~~~P~evLLvLDattGq~al~ 429 (503)
T 2yhs_A 363 VIFDAIQAAKA-RNIDV--------LIADTAGRLQNKSHLMEEL----KKIVRVMKKLDVEAPHEVMLTIDASTGQNAVS 429 (503)
T ss_dssp HHHHHHHHHHH-TTCSE--------EEECCCCSCCCHHHHHHHH----HHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHH
T ss_pred HHHHHHHHHHh-cCCCE--------EEEeCCCccchhhhHHHHH----HHHHHHHHHhccCCCCeeEEEecCcccHHHHH
Confidence 99999987643 11110 0112222221111122233 47788888764 456 4565556888876542
Q ss_pred HHHHHHHHHHHHh-CCcEEEEEccCHHH
Q psy7366 513 RRFLWTCIERAVS-EGRCVILTSHNMEE 539 (566)
Q Consensus 513 ~~~l~~~l~~~~~-~g~tvl~vsHd~~~ 539 (566)
.++.+.+ -|.|.|++|| ++.
T Consensus 430 ------~ak~f~~~~~itgvIlTK-LD~ 450 (503)
T 2yhs_A 430 ------QAKLFHEAVGLTGITLTK-LDG 450 (503)
T ss_dssp ------HHHHHHHHTCCSEEEEEC-GGG
T ss_pred ------HHHHHHhhcCCCEEEEEc-CCC
Confidence 2344443 3889999999 444
No 184
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.56 E-value=1.6e-17 Score=152.69 Aligned_cols=87 Identities=23% Similarity=0.168 Sum_probs=72.1
Q ss_pred eeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEe
Q psy7366 346 KRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCP 425 (566)
Q Consensus 346 ~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~ 425 (566)
.++++.|+ .+.+++++||+|++|++++|+||||||||||+|+|+|++ |++|+|.++|.++..... . .+ |++
T Consensus 11 ~~~~~~~g----~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~-~-~~--~~~ 81 (158)
T 1htw_A 11 EFSMLRFG----KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYN-I-AG--KMI 81 (158)
T ss_dssp HHHHHHHH----HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEE-E-TT--EEE
T ss_pred HHHHHHHH----HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeecc-C-CC--cce
Confidence 34556664 456899999999999999999999999999999999999 999999999988743211 1 12 789
Q ss_pred cCCCCCCCCCHHHHHHH
Q psy7366 426 QFDALNDRLTPREHLEF 442 (566)
Q Consensus 426 q~~~l~~~~tv~e~l~~ 442 (566)
|++.+| .+|+.||+.+
T Consensus 82 q~~~l~-~ltv~e~l~~ 97 (158)
T 1htw_A 82 YHFDLY-RLADPEELEF 97 (158)
T ss_dssp EEEECT-TCSCTTHHHH
T ss_pred eccccc-cCCcHHHHHH
Confidence 998888 8999999865
No 185
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.55 E-value=5.1e-16 Score=161.79 Aligned_cols=138 Identities=18% Similarity=0.085 Sum_probs=101.1
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEe-cCCCCCCCCCHHHH
Q psy7366 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCP-QFDALNDRLTPREH 439 (566)
Q Consensus 361 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~-q~~~l~~~~tv~e~ 439 (566)
+++++||.|++|++++|+||||||||||+++|+|+++|++|.|.++|..-. .....+..++|++ |++.+-
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~-~~~~~~~~v~~v~~q~~~~~-------- 234 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPEL-FLPDHPNHVHLFYPSEAKEE-------- 234 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCC-CCTTCSSEEEEECC--------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCcccc-CccccCCEEEEeecCccccc--------
Confidence 349999999999999999999999999999999999999999999985311 1122456789998 654210
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy7366 440 LEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTC 519 (566)
Q Consensus 440 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~ 519 (566)
++++..++..|+.++..+|+.+++|||.. ..+.+.
T Consensus 235 --------------------------------------~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~ 269 (361)
T 2gza_A 235 --------------------------------------ENAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDF 269 (361)
T ss_dssp ------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHH
T ss_pred --------------------------------------cccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHH
Confidence 02233466777788888999999999986 345566
Q ss_pred HHHHHhCCcEEEEEccCHHHHHhhCCEEEEEECC
Q psy7366 520 IERAVSEGRCVILTSHNMEECEALCTKLTIMVNG 553 (566)
Q Consensus 520 l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~~G 553 (566)
|+.+.....|++.++|..+ +...+||+..|..|
T Consensus 270 l~~l~~g~~~~l~t~H~~~-~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 270 INVAASGHGGSITSCHAGS-CELTFERLALMVLQ 302 (361)
T ss_dssp HHHHHTTCCSCEEEEECSS-HHHHHHHHHHHHTT
T ss_pred HHHHhcCCCeEEEEECCCC-HHHHHHHHHHHHhc
Confidence 6666443457899999964 66778888777655
No 186
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.55 E-value=1.6e-15 Score=156.58 Aligned_cols=122 Identities=12% Similarity=0.070 Sum_probs=91.1
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCC-CCccEEEEc-CccCCCchHHhcCceEEEecCCCCCCCCCHHH
Q psy7366 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-PTSGNAYVM-NHSIRDSMDLVRSYIGYCPQFDALNDRLTPRE 438 (566)
Q Consensus 361 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-~~~G~i~~~-g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 438 (566)
-++++++. .+|++++|+||||||||||+|+|+|..+ |.+|+|.++ |.... ...+..++|++|+..+++..++.+
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~---tt~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH---TTTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC----------------CCCEEEECTTSCEEEECHHHHT
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc---ceEEEEEEEECCCCEecCcccHHH
Confidence 35667764 4899999999999999999999999999 999999987 65432 123457999999988888778877
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHH
Q psy7366 439 HLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIAL 492 (566)
Q Consensus 439 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al 492 (566)
+. +.+.+.......+.++++.+++.++.+.++.+|| ||+||++||+++
T Consensus 281 ~~-----l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 281 FG-----LWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp CC-----CCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred hh-----hcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 41 2234444555667888999999999999999999 999999999864
No 187
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.55 E-value=2.4e-18 Score=177.70 Aligned_cols=174 Identities=18% Similarity=0.182 Sum_probs=119.8
Q ss_pred EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCch-----HHh
Q psy7366 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM-----DLV 417 (566)
Q Consensus 343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-----~~~ 417 (566)
++++++++.|+ ...+++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++.... ...
T Consensus 30 ie~~~~~~~~~----~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~ 105 (337)
T 2qm8_A 30 AESRRADHRAA----VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGD 105 (337)
T ss_dssp HTCSSHHHHHH----HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCC
T ss_pred HeeCCcccccC----hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHH
Confidence 56677777775 456899999999999999999999999999999999999999999999998764311 123
Q ss_pred cCceEEEecCCCCCCCCC------------HHHHHHHHH-----------------------------HhcCCC-chHHH
Q psy7366 418 RSYIGYCPQFDALNDRLT------------PREHLEFYS-----------------------------RVRNVP-SVLLN 455 (566)
Q Consensus 418 ~~~i~~v~q~~~l~~~~t------------v~e~l~~~~-----------------------------~~~~~~-~~~~~ 455 (566)
+.+++|++|++.+|...+ +.|.+.... ...... ....+
T Consensus 106 ~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~ 185 (337)
T 2qm8_A 106 KTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQ 185 (337)
T ss_dssp GGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC-----
T ss_pred hhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHH
Confidence 567999999987765321 222221100 000000 00000
Q ss_pred ---HHHHHHHHHcCCCCcccc-CcCcCChhHHHHHHHHHHHcC------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy7366 456 ---TIVNESLNKFALGHYSDR-EVRTLSGGNKRKLSTAIALLG------NPPLIFLDEPTSGMDPGARRFLWTCIERAVS 525 (566)
Q Consensus 456 ---~~~~~~l~~~~l~~~~~~-~~~~LSgGqkqrv~la~al~~------~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~ 525 (566)
..+.+....+.+ ...|. ....+|+|++|++..+++++. .|+++. +|++|......+++.|.++..
T Consensus 186 ~i~~~i~~~~~ivvl-NK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 186 GIKKGIFELADMIAV-NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp -CCTTHHHHCSEEEE-ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHhccccEEEE-EchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 001111111222 22342 335689999999999999987 688876 999999999999999988654
No 188
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.55 E-value=8.8e-17 Score=160.80 Aligned_cols=137 Identities=11% Similarity=0.109 Sum_probs=91.3
Q ss_pred CCcchHHHHHhccccCCCc---cCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q psy7366 1 MGLTTTPKRVVTLLLTTQK---VPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNK 77 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~~---~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~ 77 (566)
.||||++|+++|+..+... +.+...........+||++|++.+++.+||.|++.|+....+ ...++.+.+++.
T Consensus 13 aGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~---~~~~~~i~~~~~- 88 (270)
T 3sop_A 13 LGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN---ENCWEPIEKYIN- 88 (270)
T ss_dssp SSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC---TTCSHHHHHHHH-
T ss_pred CCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc---HHHHHHHHHHHH-
Confidence 5999999999999987652 222221112234579999999999999999999988653322 122233344433
Q ss_pred cCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhH
Q psy7366 78 FALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEE 152 (566)
Q Consensus 78 ~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~ 152 (566)
....++.+.+||||||||+++|||++. +++||||+.+||+.. .++++.+.+. ++||++.|..+.
T Consensus 89 ---~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~-~~vI~Vi~K~D~ 152 (270)
T 3sop_A 89 ---EQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV-VNIIPVIAKADT 152 (270)
T ss_dssp ---HHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT-SEEEEEETTGGG
T ss_pred ---HHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc-CcEEEEEecccc
Confidence 234567789999999999999999886 999999999999988 3455666555 888888887543
No 189
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.54 E-value=5.1e-16 Score=157.69 Aligned_cols=149 Identities=11% Similarity=0.030 Sum_probs=113.2
Q ss_pred CCcchHHHHHhccccCCC---ccCCCCCccc---------ccccceeEEcCCCC-CCCCCCHHHHHHHHHHhcCCChhhH
Q psy7366 1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTID---------KNLSYIGYCPQFDA-LNDRLTPREHLEFYSRVRNVPSVLL 67 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~~---------~~~~~ig~v~Q~~~-l~~~~tv~e~l~~~~~~~~~~~~~~ 67 (566)
+|||||++.+++++.+.. .+.+.+.... ....+|+|++|++. +++.+|+.|++.++.. .+.+
T Consensus 111 sGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~~~~-~~~d---- 185 (302)
T 3b9q_A 111 GGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKE-EGYD---- 185 (302)
T ss_dssp SCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHHHHH-TTCS----
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHHHHH-cCCc----
Confidence 599999999999987543 1222222111 11236999999998 8888999999987542 2211
Q ss_pred HHHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCC--EEEeeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEE
Q psy7366 68 NTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP--LIFLDEPTSGMDPGARRFLWTCIERAV-SEGRCVI 144 (566)
Q Consensus 68 ~~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~--vLlLDEPt~~LD~~~~~~l~~~l~~l~-~~g~tvi 144 (566)
..+++.+|+.+..++.+.+|| |||++||+||+.+|+ +|+|| ||+|||+..+ ++++. ..|.|+|
T Consensus 186 ----~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~------~~~~~~~~g~t~i 251 (302)
T 3b9q_A 186 ----VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ------AREFNEVVGITGL 251 (302)
T ss_dssp ----EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH------HHHHHHHTCCCEE
T ss_pred ----chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH------HHHHHHhcCCCEE
Confidence 135677888887889999999 999999999999999 99999 9999999865 24454 4599999
Q ss_pred EecC---------ChhHHHhhcCEEEEEeCCEE
Q psy7366 145 LTSH---------NMEECEALCTKLTIMVNGQF 168 (566)
Q Consensus 145 iisH---------~~~~~~~~~d~i~vl~~G~i 168 (566)
++|| .++.+....+.|.++..|+.
T Consensus 252 iiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 252 ILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp EEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred EEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 9999 56677778889999999974
No 190
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.51 E-value=4.7e-14 Score=147.64 Aligned_cols=78 Identities=28% Similarity=0.355 Sum_probs=69.8
Q ss_pred cccccCChhHHHHH------HHHHHHhCC-CCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhcC
Q psy7366 86 REVRTLSGGNKRKL------STAIALLGN-PPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCT 158 (566)
Q Consensus 86 ~~~~~LSgG~kqrl------~iA~al~~~-p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~d 158 (566)
+++..|||||+||+ ++|++|+.+ |++|||||||++||+..+..+.+.|+++. .+.+||++||+.+ +..+||
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~-~~~~~d 353 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE-LEDVAD 353 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG-GGGGCS
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH-HHhhCC
Confidence 56789999999988 567899999 99999999999999999999999999863 4568999999986 678999
Q ss_pred EEEEEeC
Q psy7366 159 KLTIMVN 165 (566)
Q Consensus 159 ~i~vl~~ 165 (566)
++++|++
T Consensus 354 ~~~~l~k 360 (371)
T 3auy_A 354 VIINVKK 360 (371)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 9999983
No 191
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.50 E-value=6.3e-16 Score=157.22 Aligned_cols=121 Identities=11% Similarity=0.063 Sum_probs=88.9
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEE---cCccCCCchHHhc-CceEEEecCCCCC-----CCCCHHH
Q psy7366 368 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV---MNHSIRDSMDLVR-SYIGYCPQFDALN-----DRLTPRE 438 (566)
Q Consensus 368 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~---~g~~~~~~~~~~~-~~i~~v~q~~~l~-----~~~tv~e 438 (566)
++.+|++++|+||||||||||+|+|+ +.+|++|+|.+ +|++++......+ ..+||++|.|.+. +.+|+ |
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 45679999999999999999999999 99999999999 8988765322222 3689999998653 67899 8
Q ss_pred HH--HHH------HHhcC-CCchHHHHHHHHHHHHcCCCC-ccccCcCcCChhHHHHHHHHH
Q psy7366 439 HL--EFY------SRVRN-VPSVLLNTIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTAI 490 (566)
Q Consensus 439 ~l--~~~------~~~~~-~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqrv~la~ 490 (566)
|+ .|. ..+.+ ....+....+.++++.++|.+ ..++++..|||.+++++.|||
T Consensus 239 ~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 239 EVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 87 333 12222 122233456889999999985 788999999999999999886
No 192
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.48 E-value=8.1e-14 Score=148.74 Aligned_cols=79 Identities=20% Similarity=0.189 Sum_probs=71.0
Q ss_pred ccccccCChhHHHHHHHHHHHh----CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhcCEE
Q psy7366 85 DREVRTLSGGNKRKLSTAIALL----GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKL 160 (566)
Q Consensus 85 ~~~~~~LSgG~kqrl~iA~al~----~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~d~i 160 (566)
.+++..|||||||+++||++|+ .+|++|||||||++||+..+..+.++|+++.+.|.++|++||+... ...||++
T Consensus 328 ~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~-~~~~d~~ 406 (430)
T 1w1w_A 328 FKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTM-FEKSDAL 406 (430)
T ss_dssp CCCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHH-HTTCSEE
T ss_pred ccccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHH-HHhCCEE
Confidence 3456779999999999999999 6899999999999999999999999999986568899999999654 5679999
Q ss_pred EEEe
Q psy7366 161 TIMV 164 (566)
Q Consensus 161 ~vl~ 164 (566)
++|.
T Consensus 407 ~~~~ 410 (430)
T 1w1w_A 407 VGVY 410 (430)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9986
No 193
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.48 E-value=4.2e-15 Score=153.91 Aligned_cols=149 Identities=11% Similarity=0.030 Sum_probs=114.6
Q ss_pred CCcchHHHHHhccccCCC---ccCCCCCccc---------ccccceeEEcCCCC-CCCCCCHHHHHHHHHHhcCCChhhH
Q psy7366 1 MGLTTTPKRVVTLLLTTQ---KVPGSNPTID---------KNLSYIGYCPQFDA-LNDRLTPREHLEFYSRVRNVPSVLL 67 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~---~~~~~~~~~~---------~~~~~ig~v~Q~~~-l~~~~tv~e~l~~~~~~~~~~~~~~ 67 (566)
+|||||++.+.+++.+.. .+.+.+.... ....+|+|++|++. +++.+|+.|++.++.. .+.+
T Consensus 168 sGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~~~~-~~~d---- 242 (359)
T 2og2_A 168 GGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKE-EGYD---- 242 (359)
T ss_dssp SCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHHHHH-TTCS----
T ss_pred ChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHHHHh-CCCH----
Confidence 599999999999987533 1222222110 11246999999998 8888999999987642 2221
Q ss_pred HHHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCC--EEEeeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEE
Q psy7366 68 NTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP--LIFLDEPTSGMDPGARRFLWTCIERAV-SEGRCVI 144 (566)
Q Consensus 68 ~~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~--vLlLDEPt~~LD~~~~~~l~~~l~~l~-~~g~tvi 144 (566)
..+++.+|+.+..++.+.+|| |||++||+||+.+|+ +|+|| ||+|||+..+. +++. ..|.|+|
T Consensus 243 ----~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~i 308 (359)
T 2og2_A 243 ----VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGL 308 (359)
T ss_dssp ----EEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEE
T ss_pred ----HHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEE
Confidence 135677888887889999999 999999999999999 99999 99999998653 3444 3599999
Q ss_pred EecC---------ChhHHHhhcCEEEEEeCCEE
Q psy7366 145 LTSH---------NMEECEALCTKLTIMVNGQF 168 (566)
Q Consensus 145 iisH---------~~~~~~~~~d~i~vl~~G~i 168 (566)
++|| .++.+....+.|.++..|+.
T Consensus 309 iiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 309 ILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp EEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred EEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 9999 46677778889999998873
No 194
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.48 E-value=1.3e-13 Score=144.33 Aligned_cols=80 Identities=29% Similarity=0.382 Sum_probs=70.2
Q ss_pred cCcCcCChhHHHHH------HHHHHHcCC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCC
Q psy7366 473 REVRTLSGGNKRKL------STAIALLGN-PPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCT 545 (566)
Q Consensus 473 ~~~~~LSgGqkqrv------~la~al~~~-p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~d 545 (566)
+++..|||||+||+ ++|++++.+ |++|||||||+|||+..+..+.+.|.++. .+.+||++||+.+ +..+||
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~-~~~~~d 353 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE-LEDVAD 353 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG-GGGGCS
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH-HHhhCC
Confidence 56789999999988 557889999 99999999999999999999999998864 3468999999986 678999
Q ss_pred EEEEEE-CCE
Q psy7366 546 KLTIMV-NGQ 554 (566)
Q Consensus 546 rv~~l~-~G~ 554 (566)
++++|+ +|.
T Consensus 354 ~~~~l~k~~~ 363 (371)
T 3auy_A 354 VIINVKKDGN 363 (371)
T ss_dssp EEEEEEESSS
T ss_pred EEEEEEecCC
Confidence 999996 443
No 195
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.48 E-value=6.1e-15 Score=138.03 Aligned_cols=113 Identities=17% Similarity=0.182 Sum_probs=78.2
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHH
Q psy7366 366 SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSR 445 (566)
Q Consensus 366 sl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~ 445 (566)
+|.+.+|+.++|+||||+|||||+++|++.+.|.+|.. +.| ++..+.+....
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-----------------~~~----------~~~~~~~~~~~- 83 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-----------------GYF----------FDTKDLIFRLK- 83 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-----------------CCE----------EEHHHHHHHHH-
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-----------------EEE----------EEHHHHHHHHH-
Confidence 45567899999999999999999999999887655521 112 13333322111
Q ss_pred hcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHH
Q psy7366 446 VRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTS-GMDPGARRFLWTCIERAV 524 (566)
Q Consensus 446 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~-gLD~~~~~~l~~~l~~~~ 524 (566)
......... -....+.+|++|+||||++ ++|+..+..+.+++.+..
T Consensus 84 --------------~~~~~~~~~-------------------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~ 130 (180)
T 3ec2_A 84 --------------HLMDEGKDT-------------------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRY 130 (180)
T ss_dssp --------------HHHHHTCCS-------------------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHH
T ss_pred --------------HHhcCchHH-------------------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHH
Confidence 001100000 0112233899999999985 999999999999999887
Q ss_pred hCCcEEEEEccCHHH
Q psy7366 525 SEGRCVILTSHNMEE 539 (566)
Q Consensus 525 ~~g~tvl~vsHd~~~ 539 (566)
++|+++|++||...+
T Consensus 131 ~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 131 NNLKSTIITTNYSLQ 145 (180)
T ss_dssp HTTCEEEEECCCCSC
T ss_pred HcCCCEEEEcCCChh
Confidence 789999999998643
No 196
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.48 E-value=4.9e-17 Score=164.56 Aligned_cols=127 Identities=13% Similarity=0.108 Sum_probs=96.7
Q ss_pred CCcchHHHHHhccccCCCccCCCCCcccccccceeEEcCCCCCCCCCCHHH-HHHHHHHhcCCChhhHHHHHHHHHHHcC
Q psy7366 1 MGLTTTPKRVVTLLLTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPRE-HLEFYSRVRNVPSVLLNTIVNESLNKFA 79 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e-~l~~~~~~~~~~~~~~~~~~~~~l~~~g 79 (566)
.||||++|++++++ .|+. +++++|++.++.. |+++ |+.+... .. ..+.+.++.+
T Consensus 137 sGKSTLl~lL~gl~-~G~I--------------~~~v~q~~~lf~~-ti~~~ni~~~~~---~~-----~~~~~~i~~~- 191 (305)
T 2v9p_A 137 TGKSMLCNSLIHFL-GGSV--------------LSFANHKSHFWLA-SLADTRAALVDD---AT-----HACWRYFDTY- 191 (305)
T ss_dssp SSHHHHHHHHHHHH-TCEE--------------ECGGGTTSGGGGG-GGTTCSCEEEEE---EC-----HHHHHHHHHT-
T ss_pred CcHHHHHHHHhhhc-CceE--------------EEEecCccccccc-cHHHHhhccCcc---cc-----HHHHHHHHHH-
Confidence 59999999999998 3322 5678999888764 7776 7765321 11 1345556654
Q ss_pred CCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhcCE
Q psy7366 80 LGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTK 159 (566)
Q Consensus 80 l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~d~ 159 (566)
|+..++ ...|||||||| ||||+.+|+||| |++||+.+++.+.. +||+++.+ ..||+
T Consensus 192 L~~gld--g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~--------------ltH~~~~~-~~aD~ 247 (305)
T 2v9p_A 192 LRNALD--GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY--------------LHSRVQTF-RFEQP 247 (305)
T ss_dssp TTGGGG--TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG--------------GTTTEEEE-ECCCC
T ss_pred hHccCC--ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH--------------HhCCHHHH-HhCCE
Confidence 444344 78999999999 999999999999 99999999988852 29998875 57999
Q ss_pred EEEEeCCEEEEecChhHH
Q psy7366 160 LTIMVNGQFTCLGSATHL 177 (566)
Q Consensus 160 i~vl~~G~i~~~g~~~~~ 177 (566)
| +|++|+++..|+++++
T Consensus 248 i-vl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 248 C-TDESGEQPFNITDADW 264 (305)
T ss_dssp C-CCC---CCCCCCHHHH
T ss_pred E-EEeCCEEEEeCCHHHH
Confidence 9 9999999999999987
No 197
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.46 E-value=8.9e-17 Score=169.99 Aligned_cols=148 Identities=11% Similarity=0.035 Sum_probs=105.0
Q ss_pred EEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc-----hHHh
Q psy7366 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS-----MDLV 417 (566)
Q Consensus 343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-----~~~~ 417 (566)
+.++++.+.|+ ...+|+++ +. .+|++++|+|||||||||||++|+|+++|++|+|.+.+.++... ....
T Consensus 144 ~~l~~Lg~~~~----~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v 217 (418)
T 1p9r_A 144 LDLHSLGMTAH----NHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQV 217 (418)
T ss_dssp CCGGGSCCCHH----HHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEEC
T ss_pred CCHHHcCCCHH----HHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEE
Confidence 45666766554 35578888 54 89999999999999999999999999999999999999887421 1122
Q ss_pred cCceEEEe---------cCCCC--CCC----CCHHHHHHHHHHhc----CCCchHHHHHHHHHHHHcCCCCccccCcCcC
Q psy7366 418 RSYIGYCP---------QFDAL--NDR----LTPREHLEFYSRVR----NVPSVLLNTIVNESLNKFALGHYSDREVRTL 478 (566)
Q Consensus 418 ~~~i~~v~---------q~~~l--~~~----~tv~e~l~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 478 (566)
+..+++.+ |+|.+ +.. .|+.+++.+....+ ......... +...+..+++.+. ..+.+|
T Consensus 218 ~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~-~i~rL~~lgl~~~--~~~~~L 294 (418)
T 1p9r_A 218 NPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVG-AVTRLRDMGIEPF--LISSSL 294 (418)
T ss_dssp BGGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHH-HHHHHHHHTCCHH--HHHHHE
T ss_pred ccccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHH-HHHHHHHcCCcHH--HHHHHH
Confidence 34455655 88764 333 58888887653211 011111122 2335677888764 378899
Q ss_pred ChhHHHHHHHHHHHcCCCCEEEE
Q psy7366 479 SGGNKRKLSTAIALLGNPPLIFL 501 (566)
Q Consensus 479 SgGqkqrv~la~al~~~p~lllL 501 (566)
||||+|| |||+|+.+|++..-
T Consensus 295 Sgg~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 295 LGVLAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp EEEEEEE--EEEEECTTTCEEEE
T ss_pred HHHHHHH--hhhhhcCCCCccCC
Confidence 9999999 99999999998763
No 198
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.45 E-value=2e-16 Score=171.65 Aligned_cols=172 Identities=13% Similarity=0.169 Sum_probs=114.7
Q ss_pred cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCcc-CCCchHHhcCceEEEecCCC--------
Q psy7366 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS-IRDSMDLVRSYIGYCPQFDA-------- 429 (566)
Q Consensus 359 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~-~~~~~~~~~~~i~~v~q~~~-------- 429 (566)
..+++++++.+++|++++|+||||||||||+++|+|+++|++|.|++.|.. +... ....+++..|...
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~---~~~~v~~~~r~~~~~~~~~~~ 323 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLY---HENWIAEVTRTGMGEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCC---CSSEEEEECBCCSSSCCBCHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCC---CCCeEEEEeecccccCCcCHH
Confidence 347889999999999999999999999999999999999999999999865 2211 0123444443221
Q ss_pred --------------CCCCCCHHHHHHHHHHhc-CCCc---hHHHHHHHHHHHHcCC-----CC----ccc---cCcCcCC
Q psy7366 430 --------------LNDRLTPREHLEFYSRVR-NVPS---VLLNTIVNESLNKFAL-----GH----YSD---REVRTLS 479 (566)
Q Consensus 430 --------------l~~~~tv~e~l~~~~~~~-~~~~---~~~~~~~~~~l~~~~l-----~~----~~~---~~~~~LS 479 (566)
++..++..|++.+..... +... -. ...+.++++++.. .. ..+ .....+|
T Consensus 324 ~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~H-a~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s 402 (511)
T 2oap_1 324 DLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLH-AGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVR 402 (511)
T ss_dssp HHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEE-CSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEES
T ss_pred HHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccc-cCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEe
Confidence 223556666554433221 2100 00 0112334444332 21 112 2345689
Q ss_pred hhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEE--EccCHHHHHhhCCE
Q psy7366 480 GGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL--TSHNMEECEALCTK 546 (566)
Q Consensus 480 gGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~--vsHd~~~~~~~~dr 546 (566)
+||+||++++. + | |+|||+.....+++.|.++..+|.|+++ +||+++++...|+.
T Consensus 403 ~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g~ 459 (511)
T 2oap_1 403 GNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLGV 459 (511)
T ss_dssp SSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHTS
T ss_pred CCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcCC
Confidence 99999877641 2 7 9999999888887777777666889885 99999999988863
No 199
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.45 E-value=2.7e-14 Score=150.15 Aligned_cols=146 Identities=16% Similarity=0.177 Sum_probs=91.0
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHH--HHHCCCCCCcc-----EEEEcCccCCCc--hHHhcCceEEEecCCCCCCCCCHHH
Q psy7366 368 GVGRGECFGLLGLNGAGKTTTFK--MLTGAIKPTSG-----NAYVMNHSIRDS--MDLVRSYIGYCPQFDALNDRLTPRE 438 (566)
Q Consensus 368 ~i~~Ge~~~l~G~NGsGKSTLl~--~i~G~~~~~~G-----~i~~~g~~~~~~--~~~~~~~i~~v~q~~~l~~~~tv~e 438 (566)
-|++|++++|+||||||||||++ ++.++.+++.| .++++++..... ...+.+++++.+| ++.+
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~--------~vle 245 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD--------DALN 245 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH--------HHHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH--------hHhh
Confidence 58999999999999999999999 45688777555 677777653211 1111222333222 2222
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHH--HHHH--cCCCCEEEEeCCCCCCCHHHH-
Q psy7366 439 HLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLST--AIAL--LGNPPLIFLDEPTSGMDPGAR- 513 (566)
Q Consensus 439 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~l--a~al--~~~p~lllLDEPt~gLD~~~~- 513 (566)
|+.+ .....++.++-.+ +..+ ..+|+++++|||++.+|+...
T Consensus 246 ni~~---------------------------------~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg 292 (400)
T 3lda_A 246 NVAY---------------------------------ARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSG 292 (400)
T ss_dssp TEEE---------------------------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-----
T ss_pred cEEE---------------------------------eccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcC
Confidence 2211 1111122222122 2222 357999999999999997533
Q ss_pred -----------HHHHHHHHHHHhC-CcEEEEEccCH-------------------HHHHhhCCEEEEEECCE
Q psy7366 514 -----------RFLWTCIERAVSE-GRCVILTSHNM-------------------EECEALCTKLTIMVNGQ 554 (566)
Q Consensus 514 -----------~~l~~~l~~~~~~-g~tvl~vsHd~-------------------~~~~~~~drv~~l~~G~ 554 (566)
..+++.|++++++ |.|||+++|.. ..+..+||.+++|++++
T Consensus 293 ~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 293 RGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 5677788888765 99999999982 23477899999998763
No 200
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.45 E-value=4.1e-16 Score=145.07 Aligned_cols=138 Identities=12% Similarity=0.032 Sum_probs=85.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHCCCCCC---ccEEEEcCccCCCc----hHHhc-CceE----EEecCCCCCCCCCHHHHH
Q psy7366 373 ECFGLLGLNGAGKTTTFKMLTGAIKPT---SGNAYVMNHSIRDS----MDLVR-SYIG----YCPQFDALNDRLTPREHL 440 (566)
Q Consensus 373 e~~~l~G~NGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~----~~~~~-~~i~----~v~q~~~l~~~~tv~e~l 440 (566)
++++|+|+||||||||+++|+|+++|+ .|.|.++|.++... ...+| +.+| +++|++.+|- .+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i----~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFI----RR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEE----EE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEE----ec--
Confidence 589999999999999999999999998 89999999885431 22334 3466 8888765441 00
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHH-c-CCCCccccCcCcCChhHHHHHHHHHHHcCCCCEE-------EEeCCCC---CC
Q psy7366 441 EFYSRVRNVPSVLLNTIVNESLNK-F-ALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLI-------FLDEPTS---GM 508 (566)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~l~~-~-~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~ll-------lLDEPt~---gL 508 (566)
...+....+.+++.. + +++.. -...|||||+||++||||++.+|++. .=|.|.. -+
T Consensus 77 ---------~~~~~~a~l~~~i~~~l~g~dt~---i~EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f 144 (171)
T 2f1r_A 77 ---------VSEEEGNDLDWIYERYLSDYDLV---ITEGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWF 144 (171)
T ss_dssp ---------CCHHHHTCHHHHHHHHTTTCSEE---EEESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEE
T ss_pred ---------CChhhhhCHHHHHHhhCCCCCEE---EECCcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCccc
Confidence 000001123445544 3 33221 12349999999999999999999873 2355432 23
Q ss_pred CHHHHHHHHHHHHHHHhCCc
Q psy7366 509 DPGARRFLWTCIERAVSEGR 528 (566)
Q Consensus 509 D~~~~~~l~~~l~~~~~~g~ 528 (566)
|....+.+.+.|.+...+|.
T Consensus 145 ~~~~~~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 145 RRDEVERIAEFILSLLREGG 164 (171)
T ss_dssp CTTCHHHHHHHHHHHHTC--
T ss_pred CcccHHHHHHHHHHHHhccC
Confidence 44556777777777666654
No 201
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.44 E-value=1.3e-14 Score=168.84 Aligned_cols=133 Identities=14% Similarity=0.161 Sum_probs=97.5
Q ss_pred CCcchHHHHHhccccCCCccCCCCCccccccccee-EEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHHcC
Q psy7366 1 MGLTTTPKRVVTLLLTTQKVPGSNPTIDKNLSYIG-YCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFA 79 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~~~~~~~~~~~~~~~~ig-~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g 79 (566)
.||||++|++ |++.. . .++| ||||++. .++|.|++. ..+|
T Consensus 800 sGKSTlLr~i-Gl~~~-----------~---aqiG~~Vpq~~~---~l~v~d~I~---------------------~rig 840 (1022)
T 2o8b_B 800 GGKSTLMRQA-GLLAV-----------M---AQMGCYVPAEVC---RLTPIDRVF---------------------TRLG 840 (1022)
T ss_dssp SSHHHHHHHH-HHHHH-----------H---HTTTCCEESSEE---EECCCSBEE---------------------EECC
T ss_pred CChHHHHHHH-HHHHH-----------H---hheeEEeccCcC---CCCHHHHHH---------------------HHcC
Confidence 4999999999 88742 1 2467 9999863 455555441 1244
Q ss_pred CCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHH-HHHHHHHHHHHHhC-CCEEEEecCChhHHHhhc
Q psy7366 80 LGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGA-RRFLWTCIERAVSE-GRCVILTSHNMEECEALC 157 (566)
Q Consensus 80 l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~-~~~l~~~l~~l~~~-g~tviiisH~~~~~~~~~ 157 (566)
+.+...+..+++|+++++ +++|++++.+|+++||||||+|+|+.. ...++++|+.+.+. |.++|++||+++.+..+|
T Consensus 841 ~~d~~~~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~ 919 (1022)
T 2o8b_B 841 ASDRIMSGESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYS 919 (1022)
T ss_dssp ---------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTS
T ss_pred CHHHHhhchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhC
Confidence 444445556788888875 999999999999999999999999987 56689999999876 999999999999999999
Q ss_pred CEEEEEeCCEEE--EecCh
Q psy7366 158 TKLTIMVNGQFT--CLGSA 174 (566)
Q Consensus 158 d~i~vl~~G~i~--~~g~~ 174 (566)
|++.++ +|++. ..|.+
T Consensus 920 d~~~v~-~g~~~~~~~~~~ 937 (1022)
T 2o8b_B 920 QNVAVR-LGHMACMVENEC 937 (1022)
T ss_dssp SCSSEE-EEEEEEC-----
T ss_pred Ccceee-cCeEEEEEecCc
Confidence 999887 58877 34443
No 202
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.44 E-value=7.9e-14 Score=126.70 Aligned_cols=87 Identities=18% Similarity=0.293 Sum_probs=68.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHCCCCCCcc--EEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcC
Q psy7366 371 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSG--NAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRN 448 (566)
Q Consensus 371 ~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G--~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~ 448 (566)
+|+.++|+||||+|||||+++|++...+ +| .+++++.++.. .
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~--------------------~--------------- 78 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPL--------------------T--------------- 78 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCC--------------------C---------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhH--------------------H---------------
Confidence 8999999999999999999999999876 46 44444332110 0
Q ss_pred CCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCc
Q psy7366 449 VPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR 528 (566)
Q Consensus 449 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~ 528 (566)
+++.+|++|++|||++ +|...++.++++++.+.++|+
T Consensus 79 ------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~ 115 (149)
T 2kjq_A 79 ------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGK 115 (149)
T ss_dssp ------------------------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTC
T ss_pred ------------------------------------------HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCC
Confidence 1246899999999998 666668999999999887788
Q ss_pred E-EEEEccC
Q psy7366 529 C-VILTSHN 536 (566)
Q Consensus 529 t-vl~vsHd 536 (566)
+ +|++||.
T Consensus 116 ~~iiits~~ 124 (149)
T 2kjq_A 116 GFLLLGSEY 124 (149)
T ss_dssp CEEEEEESS
T ss_pred cEEEEECCC
Confidence 8 8888884
No 203
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.42 E-value=2.8e-15 Score=152.93 Aligned_cols=144 Identities=10% Similarity=0.063 Sum_probs=103.8
Q ss_pred CCcchHHHHHhccccCCCccCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCC
Q psy7366 1 MGLTTTPKRVVTLLLTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFAL 80 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl 80 (566)
.||||++|++.+++.+. .|. ..|++|+|++.+++. |+.||+.+.. .++.+.....+++.++++.++
T Consensus 101 sGKSTL~~~L~gll~~~---~G~--------~~v~~v~qd~~~~~~-t~~e~~~~~~-~~g~~~~~d~~~~~~~L~~l~- 166 (312)
T 3aez_A 101 VGKSTTARVLQALLARW---DHH--------PRVDLVTTDGFLYPN-AELQRRNLMH-RKGFPESYNRRALMRFVTSVK- 166 (312)
T ss_dssp SCHHHHHHHHHHHHHTS---TTC--------CCEEEEEGGGGBCCH-HHHHHTTCTT-CTTSGGGBCHHHHHHHHHHHH-
T ss_pred chHHHHHHHHHhhcccc---CCC--------CeEEEEecCccCCcc-cHHHHHHHHH-hcCCChHHHHHHHHHHHHHhC-
Confidence 59999999999999652 111 359999999988887 9999986532 234444444567788898888
Q ss_pred CcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHH-hhcCE
Q psy7366 81 GHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECE-ALCTK 159 (566)
Q Consensus 81 ~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~-~~~d~ 159 (566)
....+.++.+|||||+||+++|+|++.+|+|||||||+..+|+.. .. +.++ .+ .+|+++|+.+... ..++|
T Consensus 167 ~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-~~----l~~~--~D-~~I~V~a~~~~~~~R~i~R 238 (312)
T 3aez_A 167 SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-LM----VSDL--FD-FSLYVDARIEDIEQWYVSR 238 (312)
T ss_dssp TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-CC----GGGG--CS-EEEEEEECHHHHHHHHHHH
T ss_pred CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-HH----HHHh--cC-cEEEEECCHHHHHHHHHHH
Confidence 555578899999999999999999999999999999999998622 11 1111 12 4566777765543 34555
Q ss_pred EEEEeCC
Q psy7366 160 LTIMVNG 166 (566)
Q Consensus 160 i~vl~~G 166 (566)
.+.+++|
T Consensus 239 ~~~~rd~ 245 (312)
T 3aez_A 239 FLAMRTT 245 (312)
T ss_dssp HHHHTTT
T ss_pred HHHHHhc
Confidence 5444443
No 204
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.42 E-value=3.2e-16 Score=164.02 Aligned_cols=169 Identities=18% Similarity=0.166 Sum_probs=122.0
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHC------------CCCCCccEEEEcCccCCCchHHh--cCc---eEEEecCCCC
Q psy7366 368 GVGRGECFGLLGLNGAGKTTTFKMLTG------------AIKPTSGNAYVMNHSIRDSMDLV--RSY---IGYCPQFDAL 430 (566)
Q Consensus 368 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G------------~~~~~~G~i~~~g~~~~~~~~~~--~~~---i~~v~q~~~l 430 (566)
.+.+|..+||+|+||+|||||+++|+| ...|+.|.|.+.|..+....... ++. ..++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999 56799999999885432111111 122 2467777888
Q ss_pred CCCCCHHHHH--HHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCC--CEEEEeCCCC
Q psy7366 431 NDRLTPREHL--EFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNP--PLIFLDEPTS 506 (566)
Q Consensus 431 ~~~~tv~e~l--~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p--~lllLDEPt~ 506 (566)
+...+..|++ .|...++..+ .++..++.. .+..+..+|++. +| +++++|||+.
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~d---------~il~Vvd~~--~d~~i~~v~~~~------------dP~~di~ildeel~ 152 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAVD---------AIYQVVRAF--DDAEIIHVEGDV------------DPIRDLSIIVDELL 152 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTCS---------EEEEEEECC--CTTCSSCCSSSS------------CHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHH---------HHHHHHhcc--ccceeeeecccc------------CcchhhhhchhhhH
Confidence 8777765544 3322222111 111111111 245666677764 89 9999999999
Q ss_pred CCCHHHHHHHHHHHHHH-HhCCcEEEEEccCHHHHHhhCCEEE-EEECC-EEEEecCc
Q psy7366 507 GMDPGARRFLWTCIERA-VSEGRCVILTSHNMEECEALCTKLT-IMVNG-QFTCLGSA 561 (566)
Q Consensus 507 gLD~~~~~~l~~~l~~~-~~~g~tvl~vsHd~~~~~~~~drv~-~l~~G-~i~~~g~~ 561 (566)
++|+...+..++.+... .+.|.|++ +|+...+..+||++. +|.+| +++..++.
T Consensus 153 ~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 153 IKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 99999999999999988 66677764 999999999999999 89999 87766554
No 205
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.42 E-value=3.6e-14 Score=149.82 Aligned_cols=153 Identities=18% Similarity=0.150 Sum_probs=95.3
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecC----------CCCC
Q psy7366 362 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQF----------DALN 431 (566)
Q Consensus 362 l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~----------~~l~ 431 (566)
-++++|+++.|++++|+|+|||||||||++|+|..+ .+.+.+.+. +...+++++++ +.+.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftT----l~p~~G~V~~~~~~~~~l~DtpGli 216 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTT----LSPNLGVVEVSEEERFTLADIPGII 216 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCS----SCCEEEEEECSSSCEEEEEECCCCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCcccce----ecceeeEEEecCcceEEEEeccccc
Confidence 489999999999999999999999999999999843 223333221 11134444433 3332
Q ss_pred CCCCHHHHHHHHHHhcCCCchHHH--HHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCC
Q psy7366 432 DRLTPREHLEFYSRVRNVPSVLLN--TIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509 (566)
Q Consensus 432 ~~~tv~e~l~~~~~~~~~~~~~~~--~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD 509 (566)
.. ..+ ...+.....+ ++++.++..+++. +.++.+||+|++|++.+|++|+..|.+|++ +.+|
T Consensus 217 ~~--a~~-------~~~L~~~fl~~~era~~lL~vvDls---~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlD 280 (416)
T 1udx_A 217 EG--ASE-------GKGLGLEFLRHIARTRVLLYVLDAA---DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVD 280 (416)
T ss_dssp CC--GGG-------SCCSCHHHHHHHTSSSEEEEEEETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCT
T ss_pred cc--hhh-------hhhhhHHHHHHHHHHHhhhEEeCCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCC
Confidence 21 000 0011111000 0112223333443 567889999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHH-HHhCCcEEEEEc-cCHHHHH
Q psy7366 510 PGARRFLWTCIER-AVSEGRCVILTS-HNMEECE 541 (566)
Q Consensus 510 ~~~~~~l~~~l~~-~~~~g~tvl~vs-Hd~~~~~ 541 (566)
+... ...+.+.+ +.+.+.+++++| |.-+-+.
T Consensus 281 l~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~ 313 (416)
T 1udx_A 281 LLEE-EAVKALADALAREGLAVLPVSALTGAGLP 313 (416)
T ss_dssp TSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred hhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHH
Confidence 9876 44444444 444577777655 4433333
No 206
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.41 E-value=1.8e-16 Score=163.73 Aligned_cols=176 Identities=18% Similarity=0.153 Sum_probs=117.4
Q ss_pred EEEeeeEEEeCCcCCCcceeeeeeEEEeCC-------cEEEEEcCCCCcHHHHHHHHHCCC----CCCccEEEEcCccCC
Q psy7366 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRG-------ECFGLLGLNGAGKTTTFKMLTGAI----KPTSGNAYVMNHSIR 411 (566)
Q Consensus 343 l~~~~l~~~y~~~~~~~~~l~~isl~i~~G-------e~~~l~G~NGsGKSTLl~~i~G~~----~~~~G~i~~~g~~~~ 411 (566)
+..+++++.|+ ...+++++++.+.+| +.++|.||||+|||||+++|+|.+ .+.+|.+..++.++.
T Consensus 19 lr~~~l~~~~g----~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~ 94 (334)
T 1in4_A 19 LRPKSLDEFIG----QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMA 94 (334)
T ss_dssp TSCSSGGGCCS----CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHH
T ss_pred cCCccHHHccC----cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHH
Confidence 33445555554 456889999999877 899999999999999999999998 667777766555432
Q ss_pred CchHH-hcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCC----chHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHH
Q psy7366 412 DSMDL-VRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVP----SVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKL 486 (566)
Q Consensus 412 ~~~~~-~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv 486 (566)
..... .+..|.|++|...+.+ ++.|++.......... .....+.+...+..+++.. ...++..||+|++||+
T Consensus 95 ~~~~~~~~~~v~~iDE~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~~~Ls~~l~sR~ 171 (334)
T 1in4_A 95 AILTSLERGDVLFIDEIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRSGLLSSPLRSRF 171 (334)
T ss_dssp HHHHHCCTTCEEEEETGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESCGGGSCHHHHTTC
T ss_pred HHHHHccCCCEEEEcchhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCCcccCCHHHHHhc
Confidence 21111 2457999999776654 7778774433322211 1111233444555555544 6778899999999998
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCE
Q psy7366 487 STAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTK 546 (566)
Q Consensus 487 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~dr 546 (566)
.++ .+||+.+...+.++|++.++. + ++|+.+.+..+|++
T Consensus 172 ~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 172 GII----------------LELDFYTVKELKEIIKRAASLMD-----VEIEDAAAEMIAKR 211 (334)
T ss_dssp SEE----------------EECCCCCHHHHHHHHHHHHHHTT-----CCBCHHHHHHHHHT
T ss_pred Cce----------------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCHHHHHHHHHh
Confidence 654 788888899999999887643 4 36888877777654
No 207
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.40 E-value=1.1e-13 Score=140.18 Aligned_cols=157 Identities=13% Similarity=0.048 Sum_probs=95.0
Q ss_pred CCcchHHHHHhccccCCC--ccC--CCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy7366 1 MGLTTTPKRVVTLLLTTQ--KVP--GSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLN 76 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~--~~~--~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~ 76 (566)
+||||+++.+++.+.+.. .+. +..........++.++.|...+ ++.+++.... ++..+..+.+.++++
T Consensus 46 ~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~----~~~~~l~~~~----~~~~~~~~~~~~~l~ 117 (296)
T 1cr0_A 46 MGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRL----RQSDSLKREI----IENGKFDQWFDELFG 117 (296)
T ss_dssp SSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCG----GGCHHHHHHH----HHHTHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCCh----hhccccccCC----CCHHHHHHHHHHHhc
Confidence 699999999999987532 111 0000001111223333333221 2223332211 112233344455554
Q ss_pred HcCCCcccccccccCChhH-HHHHHHHHHHhCCCCEEEeeCCCC---C---CCH-HHHHHHHHHHHHHHhC-CCEEEEec
Q psy7366 77 KFALGHYSDREVRTLSGGN-KRKLSTAIALLGNPPLIFLDEPTS---G---MDP-GARRFLWTCIERAVSE-GRCVILTS 147 (566)
Q Consensus 77 ~~gl~~~~~~~~~~LSgG~-kqrl~iA~al~~~p~vLlLDEPt~---~---LD~-~~~~~l~~~l~~l~~~-g~tviiis 147 (566)
..++. .+..+.++|.++ +|++. |+++..+|++|||||||+ + +|+ ..+..+.+.|++++++ |+|||++|
T Consensus 118 ~~~l~--i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vs 194 (296)
T 1cr0_A 118 NDTFH--LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVIC 194 (296)
T ss_dssp SSCEE--EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_pred cCCEE--EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEE
Confidence 33332 233345788888 66666 999999999999999999 5 555 7778899999998654 99999999
Q ss_pred CCh--h--------------------HHHhhcCEEEEEeCCEE
Q psy7366 148 HNM--E--------------------ECEALCTKLTIMVNGQF 168 (566)
Q Consensus 148 H~~--~--------------------~~~~~~d~i~vl~~G~i 168 (566)
|+. + .+..+||+|++|++|+.
T Consensus 195 h~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 195 HLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred ecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 995 5 78889999999999985
No 208
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.39 E-value=2.6e-13 Score=140.52 Aligned_cols=137 Identities=17% Similarity=0.147 Sum_probs=76.3
Q ss_pred EEEEcCCCCcHHHHHHHHHC-CCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchH
Q psy7366 375 FGLLGLNGAGKTTTFKMLTG-AIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVL 453 (566)
Q Consensus 375 ~~l~G~NGsGKSTLl~~i~G-~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~ 453 (566)
+.|.||||+|||||+++|+| ++.|+.|.+.++|.+...... .+..+++++|.+.+....+- .+....
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----------~~~~~~- 106 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN-RKLELNVVSSPYHLEITPSD----------MGNNDR- 106 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC-------------------CCEECSSEEEECCC--------------CCH-
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc-ccceeeeecccceEEecHhh----------cCCcch-
Confidence 88999999999999999999 889999999999977643222 24568888887543211110 001110
Q ss_pred HHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEE
Q psy7366 454 LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILT 533 (566)
Q Consensus 454 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~v 533 (566)
..+.+.++.+.-....+... .||| +..+|+++|+|||++ ||+.++..+.+.|.+.. .+.++|++
T Consensus 107 --~~~~~~i~~~~~~~~~~~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~-~~~~~Il~ 170 (354)
T 1sxj_E 107 --IVIQELLKEVAQMEQVDFQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMV 170 (354)
T ss_dssp --HHHHHHHHHHTTTTC------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEE
T ss_pred --HHHHHHHHHHHHhccccccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc-CCCEEEEE
Confidence 01223333322111111111 5676 778999999999999 99999999999998763 36899999
Q ss_pred ccCHHH
Q psy7366 534 SHNMEE 539 (566)
Q Consensus 534 sHd~~~ 539 (566)
||+.+.
T Consensus 171 t~~~~~ 176 (354)
T 1sxj_E 171 CDSMSP 176 (354)
T ss_dssp ESCSCS
T ss_pred eCCHHH
Confidence 999754
No 209
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.37 E-value=2.1e-14 Score=145.43 Aligned_cols=128 Identities=19% Similarity=0.105 Sum_probs=88.4
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHH
Q psy7366 363 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEF 442 (566)
Q Consensus 363 ~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~ 442 (566)
++++|+ +|++++++|+||+||||++..|+|.+.+..|+|.+.+.++...... +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~---------------------~ql-- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR---------------------EQL-- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHH---------------------HHH--
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHH---------------------HHH--
Confidence 567887 9999999999999999999999999998889998887765331100 000
Q ss_pred HHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCC-CCCCCHHHHHHHHHHHH
Q psy7366 443 YSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEP-TSGMDPGARRFLWTCIE 521 (566)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEP-t~gLD~~~~~~l~~~l~ 521 (566)
..+.+..++.-..... ..+-.+.+|.+|+.+...+++++|+||| +.++|......+.++.+
T Consensus 146 ----------------~~~~~~~~l~~~~~~~--~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~ 207 (295)
T 1ls1_A 146 ----------------RLLGEKVGVPVLEVMD--GESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKE 207 (295)
T ss_dssp ----------------HHHHHHHTCCEEECCT--TCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHH
T ss_pred ----------------HHhcccCCeEEEEcCC--CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhh
Confidence 0112233443221000 1122345688999988899999999999 99999988888877776
Q ss_pred HHHhCCcEEEEEc
Q psy7366 522 RAVSEGRCVILTS 534 (566)
Q Consensus 522 ~~~~~g~tvl~vs 534 (566)
.+. ...+++++.
T Consensus 208 ~~~-~~~~~lv~~ 219 (295)
T 1ls1_A 208 VLG-PDEVLLVLD 219 (295)
T ss_dssp HHC-CSEEEEEEE
T ss_pred hcC-CCEEEEEEe
Confidence 553 334444443
No 210
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.36 E-value=4e-15 Score=151.76 Aligned_cols=139 Identities=14% Similarity=0.143 Sum_probs=100.3
Q ss_pred CeEEEeeeEEEeCCcCCCcceeeeeeEEE-------------------eCCcEEEEEcCCCCcHHHHHHHHHCCCC--CC
Q psy7366 341 DVLVVKRLFKIYANSKGTKPAVNQISFGV-------------------GRGECFGLLGLNGAGKTTTFKMLTGAIK--PT 399 (566)
Q Consensus 341 ~~l~~~~l~~~y~~~~~~~~~l~~isl~i-------------------~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--~~ 399 (566)
.+|+++++++.|. +++++++|.+ .+|+++||+||||||||||+++|+|+++ |+
T Consensus 36 ~~i~~~~v~~~y~------~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~ 109 (308)
T 1sq5_A 36 EDLSLEEVAEIYL------PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE 109 (308)
T ss_dssp TTCCHHHHHHTHH------HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT
T ss_pred cccchHhHHHHHH------HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC
Confidence 4588999999883 5889999988 9999999999999999999999999988 99
Q ss_pred ccEEEE---cCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcC
Q psy7366 400 SGNAYV---MNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVR 476 (566)
Q Consensus 400 ~G~i~~---~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 476 (566)
+|+|.+ +|..... ..++.++++ |...+++.+++.+|+.+...+..... ....+..
T Consensus 110 ~G~i~vi~~d~~~~~~---~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~------------------~i~~P~~ 167 (308)
T 1sq5_A 110 HRRVELITTDGFLHPN---QVLKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVP------------------NVTAPVY 167 (308)
T ss_dssp CCCEEEEEGGGGBCCH---HHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCS------------------CEEECCE
T ss_pred CCeEEEEecCCccCcH---HHHHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCC------------------ceecccc
Confidence 999999 8876432 223457888 87777788899999887654432100 0112222
Q ss_pred cCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCC
Q psy7366 477 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509 (566)
Q Consensus 477 ~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD 509 (566)
..+.+ +|+..+.+.+.+++++|+|.|....+
T Consensus 168 ~~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~ 198 (308)
T 1sq5_A 168 SHLIY--DVIPDGDKTVVQPDILILEGLNVLQS 198 (308)
T ss_dssp ETTTT--EECTTCCEEEC-CCEEEEECTTTTCC
T ss_pred ccccc--CcccccceecCCCCEEEECchhhCCC
Confidence 22322 22222223456789999999988776
No 211
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.35 E-value=2.7e-14 Score=144.10 Aligned_cols=126 Identities=16% Similarity=0.092 Sum_probs=89.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHH-----
Q psy7366 370 GRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYS----- 444 (566)
Q Consensus 370 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~----- 444 (566)
.++.++||+|++|||||||.+.|.+++.+. | .. ++.+.+|+||..+++. +..+|+.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~~--------~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------GG--------EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------GG--------GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------CC--------CceEEEeccccccCCh-HHHHHHhccccccch
Confidence 467799999999999999999999998763 2 10 2345566999877654 8888887642
Q ss_pred -HhcCCCchHHHHHHHHHHHHcCCC------C--ccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH
Q psy7366 445 -RVRNVPSVLLNTIVNESLNKFALG------H--YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG 511 (566)
Q Consensus 445 -~~~~~~~~~~~~~~~~~l~~~~l~------~--~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~ 511 (566)
...+.+.......+.+.++.+.-. . ....+...+||||+||+.+|++...+|+|||+||||+++|+.
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence 111233333344566667666432 1 134456789999999999884433399999999999999985
No 212
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.34 E-value=2.5e-14 Score=145.38 Aligned_cols=110 Identities=13% Similarity=0.147 Sum_probs=76.1
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEE---cCccCCCchHHhc-CceEEEecCCC-------------
Q psy7366 367 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV---MNHSIRDSMDLVR-SYIGYCPQFDA------------- 429 (566)
Q Consensus 367 l~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~---~g~~~~~~~~~~~-~~i~~v~q~~~------------- 429 (566)
|++.+|++++|+||||||||||+|+|+|+.+|++|+|.+ +|++++......+ +.+||++|.|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456689999999999999999999999999999999999 8988764322222 36899999975
Q ss_pred ---CCCCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCC-CccccCcCcCCh
Q psy7366 430 ---LNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALG-HYSDREVRTLSG 480 (566)
Q Consensus 430 ---l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSg 480 (566)
+|+.+|+ +|+.|....+ ..+...++.++++.++|. +..++++..||.
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~---~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNH---VDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCS---SSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcC---CCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4788888 8887642111 122345688999999995 677888888885
No 213
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.32 E-value=3.4e-13 Score=138.63 Aligned_cols=67 Identities=19% Similarity=0.119 Sum_probs=57.9
Q ss_pred hhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhcCEEEEEeCCE
Q psy7366 93 GGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 167 (566)
Q Consensus 93 gG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~d~i~vl~~G~ 167 (566)
|||+||++||+||..+|++|||||||+ .+++++|+.+...+.|+|+++|+.+ +.+.|||+++|.+|.
T Consensus 225 gg~~~r~~la~aL~~~p~ilildE~~~-------~e~~~~l~~~~~g~~tvi~t~H~~~-~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 225 GNITSADCLKSCLRMRPDRIILGELRS-------SEAYDFYNVLCSGHKGTLTTLHAGS-SEEAFIRLANMSSSN 291 (330)
T ss_dssp TTBCHHHHHHHHTTSCCSEEEECCCCS-------THHHHHHHHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHTS
T ss_pred CChhHHHHHHHHhhhCCCEEEEcCCCh-------HHHHHHHHHHhcCCCEEEEEEcccH-HHHHhhhheehhcCC
Confidence 899999999999999999999999998 2456777776543458999999998 777899999998876
No 214
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.32 E-value=5.6e-16 Score=155.41 Aligned_cols=144 Identities=15% Similarity=0.074 Sum_probs=102.2
Q ss_pred cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCceEEEecCC-CCCCCCCH
Q psy7366 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSYIGYCPQFD-ALNDRLTP 436 (566)
Q Consensus 359 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~i~~v~q~~-~l~~~~tv 436 (566)
..+++++++.+++| ++|+||||||||||+++|+|...+ |.|.++|.++.. ......+.++++||.. ...+.+++
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~ 108 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIF 108 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEe
Confidence 45789999999999 999999999999999999999876 799999988753 2233344577788764 34455566
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCC----------
Q psy7366 437 REHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTS---------- 506 (566)
Q Consensus 437 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~---------- 506 (566)
.|++......+. .... -......++.+.+|||||+||+.|++|+..+|++| |||+.
T Consensus 109 ~Deid~~~~~r~------~~~~------~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~ 174 (274)
T 2x8a_A 109 FDEVDALCPRRS------DRET------GASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLF 174 (274)
T ss_dssp EETCTTTCC---------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEE
T ss_pred eehhhhhhcccC------CCcc------hHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEE
Confidence 666543211110 0000 01234456778899999999999999999999985 99864
Q ss_pred --CCCHHHHHHHHHHH
Q psy7366 507 --GMDPGARRFLWTCI 520 (566)
Q Consensus 507 --gLD~~~~~~l~~~l 520 (566)
--|...+..+++.+
T Consensus 175 ~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 175 VGLPPPADRLAILKTI 190 (274)
T ss_dssp CCSCCHHHHHHHHHHH
T ss_pred eCCcCHHHHHHHHHHH
Confidence 33677777766544
No 215
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.31 E-value=8.8e-15 Score=140.44 Aligned_cols=131 Identities=15% Similarity=0.130 Sum_probs=107.4
Q ss_pred CCcchHHHHHhccccCCCccCCCCCcccccccceeEEcCCCCCC--CCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHHc
Q psy7366 1 MGLTTTPKRVVTLLLTTQKVPGSNPTIDKNLSYIGYCPQFDALN--DRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKF 78 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~l~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~ 78 (566)
+||||++|++.+++-+ .++|++|++.++ ..+|+.++..+.. +.+.....+++.+.++.+
T Consensus 17 sGKSTl~~~l~~~~~~----------------~i~~v~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~ 77 (211)
T 3asz_A 17 SGKTTLAQALARTLGE----------------RVALLPMDHYYKDLGHLPLEERLRVNY---DHPDAFDLALYLEHAQAL 77 (211)
T ss_dssp SSHHHHHHHHHHHHGG----------------GEEEEEGGGCBCCCTTSCHHHHHHSCT---TSGGGBCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCC----------------CeEEEecCccccCcccccHHHhcCCCC---CChhhhhHHHHHHHHHHH
Confidence 5999999999998742 499999998776 4689988875431 222233345677888888
Q ss_pred CCCcccccccccCChhHH----HHHHHHHHHhCCCCEEEeeCCCCC-------CCHHHHHHHHHHHHHH-HhCCCEEEEe
Q psy7366 79 ALGHYSDREVRTLSGGNK----RKLSTAIALLGNPPLIFLDEPTSG-------MDPGARRFLWTCIERA-VSEGRCVILT 146 (566)
Q Consensus 79 gl~~~~~~~~~~LSgG~k----qrl~iA~al~~~p~vLlLDEPt~~-------LD~~~~~~l~~~l~~l-~~~g~tviii 146 (566)
++....++++.++|+|++ ||+++|++++.+|.++++||||++ ||+.....+.+.+++. ++.|.|++++
T Consensus 78 ~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~ 157 (211)
T 3asz_A 78 LRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGV 157 (211)
T ss_dssp HTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHH
Confidence 888877888999999974 688999999999999999999999 9999999999998875 4569999999
Q ss_pred cCCh
Q psy7366 147 SHNM 150 (566)
Q Consensus 147 sH~~ 150 (566)
+|+.
T Consensus 158 ~~~~ 161 (211)
T 3asz_A 158 VAQY 161 (211)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9984
No 216
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.31 E-value=8.7e-14 Score=136.58 Aligned_cols=74 Identities=15% Similarity=0.038 Sum_probs=58.5
Q ss_pred ChhHHHHHHHHHHHhCCCCEEEeeCCCCCCC-----HHHHHHHHHHHHHHHhCCCEEEEecCChhHH---------Hhhc
Q psy7366 92 SGGNKRKLSTAIALLGNPPLIFLDEPTSGMD-----PGARRFLWTCIERAVSEGRCVILTSHNMEEC---------EALC 157 (566)
Q Consensus 92 SgG~kqrl~iA~al~~~p~vLlLDEPt~~LD-----~~~~~~l~~~l~~l~~~g~tviiisH~~~~~---------~~~~ 157 (566)
+.++......+..-..+|++++|||||++|| +..++.+.++++.+++.|+|||++||+++++ ..+|
T Consensus 119 ~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~ 198 (251)
T 2ehv_A 119 NVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFI 198 (251)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGG
T ss_pred cHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEe
Confidence 3444444444444568999999999999998 7777779999999988899999999999998 6788
Q ss_pred -CEEEEEeC
Q psy7366 158 -TKLTIMVN 165 (566)
Q Consensus 158 -d~i~vl~~ 165 (566)
|+|++|++
T Consensus 199 aD~vi~l~~ 207 (251)
T 2ehv_A 199 ARGVIVLDL 207 (251)
T ss_dssp CSEEEEEEE
T ss_pred eeEEEEEee
Confidence 99999974
No 217
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.31 E-value=2.1e-14 Score=152.94 Aligned_cols=152 Identities=13% Similarity=0.110 Sum_probs=113.5
Q ss_pred CCcchHHHHHhccccCCCc---cCCCC---Ccc--------cccccceeEEcCC-CCCCCCCCHHHHHHHHHHhcCCChh
Q psy7366 1 MGLTTTPKRVVTLLLTTQK---VPGSN---PTI--------DKNLSYIGYCPQF-DALNDRLTPREHLEFYSRVRNVPSV 65 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~~---~~~~~---~~~--------~~~~~~ig~v~Q~-~~l~~~~tv~e~l~~~~~~~~~~~~ 65 (566)
.||||++|+|+++.-++.. +.|.. ... ....+.|+|++|+ ..+++.+|+.+|+.+.++.+....
T Consensus 168 sGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~- 246 (438)
T 2dpy_A 168 VGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRG- 246 (438)
T ss_dssp SSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTT-
T ss_pred CCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCC-
Confidence 5999999999999876652 22221 100 1123569999995 456677899999987665431100
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHh---C-CC
Q psy7366 66 LLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS---E-GR 141 (566)
Q Consensus 66 ~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~---~-g~ 141 (566)
-......+ .+..||+|| ||++|| +.+|++ |++||+.....+.+++.++.+ + |.
T Consensus 247 ------------~~v~~~ld-~l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~Gs 303 (438)
T 2dpy_A 247 ------------QHVLLIMD-SLTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGS 303 (438)
T ss_dssp ------------CEEEEEEE-CHHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCE
T ss_pred ------------CCHHHHHH-hHHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCc
Confidence 00111122 378899999 999999 889988 999999999999999999865 3 64
Q ss_pred -----EEEEecCChhHHHhhcCEEEEEeCCEEEEecChhHHH
Q psy7366 142 -----CVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 178 (566)
Q Consensus 142 -----tviiisH~~~~~~~~~d~i~vl~~G~i~~~g~~~~~~ 178 (566)
||+++|||++ ..+||++++|.+|+++..+++.++.
T Consensus 304 iT~~~tVlv~tHdl~--~~iad~v~~l~dG~Ivl~~~~~~~~ 343 (438)
T 2dpy_A 304 ITAFYTVLTEGDDQQ--DPIADSARAILDGHIVLSRRLAEAG 343 (438)
T ss_dssp EEEEEEEECSSSCSC--CHHHHHHHHHSSEEEEECHHHHHTT
T ss_pred ccceeEEEEeCCCcc--chhhceEEEEeCcEEEEeCCHHHcc
Confidence 9999999998 6789999999999999998887653
No 218
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.30 E-value=7.7e-14 Score=141.38 Aligned_cols=118 Identities=12% Similarity=0.145 Sum_probs=71.3
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEE---cCccCCCchHHhcCceEEEecCCCCCC----CCCHHHH
Q psy7366 367 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV---MNHSIRDSMDLVRSYIGYCPQFDALND----RLTPREH 439 (566)
Q Consensus 367 l~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~---~g~~~~~~~~~~~~~i~~v~q~~~l~~----~~tv~e~ 439 (566)
+++.+|++++|+||||+|||||+|+|+|+.+|..|+|.+ +|+.++......+..++|++|.|.+.. .+|+ |+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HH
Confidence 456789999999999999999999999999999999998 887765432222223799999987654 6789 88
Q ss_pred HH--HHH--Hh------cC-CCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHH
Q psy7366 440 LE--FYS--RV------RN-VPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRK 485 (566)
Q Consensus 440 l~--~~~--~~------~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqr 485 (566)
+. |.. .+ .+ ....+....+.++++.++|.+........|+.|++||
T Consensus 247 l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~~ 303 (307)
T 1t9h_A 247 LGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDR 303 (307)
T ss_dssp HGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhc
Confidence 83 221 01 11 1122223567899999999865556666777788773
No 219
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.30 E-value=6.4e-16 Score=149.70 Aligned_cols=152 Identities=10% Similarity=0.034 Sum_probs=102.2
Q ss_pred CCcchHHHHHhccccCCCccCCCCCcc----cccccceeEEcCCCCCCCCCC-HHHHHH---HHHHhcCCChhhHHHHHH
Q psy7366 1 MGLTTTPKRVVTLLLTTQKVPGSNPTI----DKNLSYIGYCPQFDALNDRLT-PREHLE---FYSRVRNVPSVLLNTIVN 72 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~~~~~~~~~~----~~~~~~ig~v~Q~~~l~~~~t-v~e~l~---~~~~~~~~~~~~~~~~~~ 72 (566)
.||||++|++++++ +|+...+.+... .....+++|++|++.+|+.++ +.+++. +....++.+ ...++
T Consensus 34 sGKSTLl~~L~g~~-pG~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~----~~~i~ 108 (218)
T 1z6g_A 34 VGKGTLIKKLLNEF-PNYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDNYANNFYGTL----KSEYD 108 (218)
T ss_dssp SSHHHHHHHHHHHS-TTTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEE----HHHHH
T ss_pred CCHHHHHHHHHhhC-CCcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhhccchhhhhhcccccCCCc----HHHHH
Confidence 59999999999988 555321222111 112357999999987665432 111111 111112222 23456
Q ss_pred HHHHHcCCCcccccccccCChhHHHHHHH-----HHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHh-------CC
Q psy7366 73 ESLNKFALGHYSDREVRTLSGGNKRKLST-----AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS-------EG 140 (566)
Q Consensus 73 ~~l~~~gl~~~~~~~~~~LSgG~kqrl~i-----A~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~-------~g 140 (566)
++++...+. ..+ .+|||||+||++| |++++.+|++++|||||+++|..+.+.+.+.|.++.+ .+
T Consensus 109 ~~l~~~~~~-il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~ 184 (218)
T 1z6g_A 109 KAKEQNKIC-LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLN 184 (218)
T ss_dssp HHHHTTCEE-EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHhCCCcE-EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccC
Confidence 666654432 222 5799999999999 8999999999999999999999999999888877633 35
Q ss_pred CEEEEecCChhHHHhhcCEEE
Q psy7366 141 RCVILTSHNMEECEALCTKLT 161 (566)
Q Consensus 141 ~tviiisH~~~~~~~~~d~i~ 161 (566)
...|+++|+++++...+++++
T Consensus 185 ~d~iiv~~~~~ea~~~~~~ii 205 (218)
T 1z6g_A 185 FNLSIINDDLTLTYQQLKNYL 205 (218)
T ss_dssp CSEEEECSSHHHHHHHHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHH
Confidence 667788888888877777765
No 220
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.30 E-value=2.7e-13 Score=155.85 Aligned_cols=88 Identities=24% Similarity=0.248 Sum_probs=72.8
Q ss_pred cccCChhHHHHHHHHHHH--hCCCCEEEeeCCCCCCCHHHHHHH-HHHHHHHHh-CCCEEEEecCChhHHHhhcCEEEEE
Q psy7366 88 VRTLSGGNKRKLSTAIAL--LGNPPLIFLDEPTSGMDPGARRFL-WTCIERAVS-EGRCVILTSHNMEECEALCTKLTIM 163 (566)
Q Consensus 88 ~~~LSgG~kqrl~iA~al--~~~p~vLlLDEPt~~LD~~~~~~l-~~~l~~l~~-~g~tviiisH~~~~~~~~~d~i~vl 163 (566)
...+|++++++..+|+++ +.+|+++||||||+|||+.....+ +.+++.+.+ .|.++|++||+. ++..+||++..+
T Consensus 719 ~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~-el~~lad~~~~v 797 (934)
T 3thx_A 719 LKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH-ELTALANQIPTV 797 (934)
T ss_dssp ----CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG-GGGGGGGTCTTE
T ss_pred HHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH-HHHHHhccccee
Confidence 346788888888888888 899999999999999999988887 788888876 499999999995 555799999999
Q ss_pred eCCEEEEecChhH
Q psy7366 164 VNGQFTCLGSATH 176 (566)
Q Consensus 164 ~~G~i~~~g~~~~ 176 (566)
++|++...++.++
T Consensus 798 ~ng~v~~~~~~~~ 810 (934)
T 3thx_A 798 NNLHVTALTTEET 810 (934)
T ss_dssp EEEEEEEEEETTE
T ss_pred EeeEEEEEecCCc
Confidence 9999988776554
No 221
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.25 E-value=1e-15 Score=146.00 Aligned_cols=152 Identities=18% Similarity=0.160 Sum_probs=82.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCCCC-------------CCccEEEEcCccCCC-chHHhcCceEEEecCCCCCCCCC
Q psy7366 370 GRGECFGLLGLNGAGKTTTFKMLTGAIK-------------PTSGNAYVMNHSIRD-SMDLVRSYIGYCPQFDALNDRLT 435 (566)
Q Consensus 370 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-------------~~~G~i~~~g~~~~~-~~~~~~~~i~~v~q~~~l~~~~t 435 (566)
++|++++|+||||||||||+++|+|+++ |..|+ ++|.++.. ....+++.+ +|+..++. .+
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~-~~ 75 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEH-AE 75 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEE-EE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEee-ee
Confidence 5799999999999999999999999875 56665 45554422 122222221 23222111 12
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHH----HHHHHH-HHcCCCCEEEEeCCCCCCCH
Q psy7366 436 PREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKR----KLSTAI-ALLGNPPLIFLDEPTSGMDP 510 (566)
Q Consensus 436 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkq----rv~la~-al~~~p~lllLDEPt~gLD~ 510 (566)
+.+|+ ++.+. +.+.++++.-.. ...+..+ .|-++ ++ .++ +++.+|++++|||||+++|.
T Consensus 76 ~~~n~------~g~~~----~~i~~~~~~~~~-~~~~~~~----~g~~~~~~~~~-~~~~~~l~~p~~~ilde~~~~~d~ 139 (198)
T 1lvg_A 76 FSGNL------YGTSK----EAVRAVQAMNRI-CVLDVDL----QGVRSIKKTDL-CPIYIFVQPPSLDVLEQRLRLRNT 139 (198)
T ss_dssp ETTEE------EEEEH----HHHHHHHHTTCE-EEEECCH----HHHHHHTTSSC-CCEEEEEECSCHHHHHHHHHHHTC
T ss_pred ecCcc------CCCCH----HHHHHHHHcCCc-EEEECCH----HHHHHHHhcCC-CcEEEEEeCCCHHHHHHHHHhcCC
Confidence 22222 11111 122333332100 0000000 01110 11 455 67888889999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEccCHHHHHhhCCEEEEEE
Q psy7366 511 GARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMV 551 (566)
Q Consensus 511 ~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~~~~drv~~l~ 551 (566)
.+.+.+.+.|..+.++ +.++|. . ..+|++++++
T Consensus 140 ~~e~~i~~~l~~~~~~----~~~a~~--~--~~~D~iivnd 172 (198)
T 1lvg_A 140 ETEESLAKRLAAARTD----MESSKE--P--GLFDLVIIND 172 (198)
T ss_dssp SCHHHHHHHHHHHHHH----TTGGGS--T--TTCSEEEECS
T ss_pred CCHHHHHHHHHHHHHH----HHHhhc--c--CCceEEEECC
Confidence 9999998888776543 233451 1 4578877765
No 222
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.24 E-value=2.4e-14 Score=137.45 Aligned_cols=114 Identities=11% Similarity=0.095 Sum_probs=66.4
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHCCCCCC---ccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHH
Q psy7366 369 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPT---SGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSR 445 (566)
Q Consensus 369 i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~ 445 (566)
.++|++++|+||||||||||+++|+|+++|. .|.|.++|..+.. +..+++....
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~----------------------~~~~~~~~~~- 75 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDN----------------------RLLEPRGLLP- 75 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCH----------------------HHHGGGTCGG-
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCH----------------------HHHHHhcccc-
Confidence 4789999999999999999999999999864 4555555544321 1111110000
Q ss_pred hcCCCchHHHHHHHHHHHHcCCCCc----cccCcCcCChhHHHHHHHH-HHHcCCCCEEEEeCCC
Q psy7366 446 VRNVPSVLLNTIVNESLNKFALGHY----SDREVRTLSGGNKRKLSTA-IALLGNPPLIFLDEPT 505 (566)
Q Consensus 446 ~~~~~~~~~~~~~~~~l~~~~l~~~----~~~~~~~LSgGqkqrv~la-~al~~~p~lllLDEPt 505 (566)
..+.+.......+.+.+..+...+. .......+|+||+|+++++ ++++.++.++++|||.
T Consensus 76 ~~~~~~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 76 RKGAPETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp GTTSGGGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred cCCCCchhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 0011111111112222322211111 1122335799999999988 8888888888888874
No 223
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.23 E-value=7.2e-12 Score=125.66 Aligned_cols=139 Identities=9% Similarity=0.038 Sum_probs=93.6
Q ss_pred CCcchHHHHHhccccCCCccCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCC
Q psy7366 1 MGLTTTPKRVVTLLLTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFAL 80 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl 80 (566)
+||||+++.+++.+..|..+.+..+. ....+.|+..+... ..+.+.+.-.. ...+ .....++++.+++
T Consensus 41 sGKTtl~~~l~~~~~~g~~~~g~~~~---~~~~v~~~~~e~~~---~~~~~r~~~~g--~~~~----~~~~~~~~~~l~l 108 (279)
T 1nlf_A 41 AGKSMLALQLAAQIAGGPDLLEVGEL---PTGPVIYLPAEDPP---TAIHHRLHALG--AHLS----AEERQAVADGLLI 108 (279)
T ss_dssp SSHHHHHHHHHHHHHTCCCTTCCCCC---CCCCEEEEESSSCH---HHHHHHHHHHH--TTSC----HHHHHHHHHHEEE
T ss_pred CCHHHHHHHHHHHHhcCCCcCCCccC---CCccEEEEECCCCH---HHHHHHHHHHH--hhcC----hhhhhhccCceEE
Confidence 59999999999877777655443221 12357777655321 01111111100 1122 2345667888888
Q ss_pred CcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCC--CCCHHHH---HHHHHHHHHHH-hCCCEEEEecCChhHHH
Q psy7366 81 GHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTS--GMDPGAR---RFLWTCIERAV-SEGRCVILTSHNMEECE 154 (566)
Q Consensus 81 ~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~--~LD~~~~---~~l~~~l~~l~-~~g~tviiisH~~~~~~ 154 (566)
....++++..||+||+|++ ++++.+|+++||||||+ ++|+... ..+.+.|++++ +.|+|||+++|+.....
T Consensus 109 ~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 109 QPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGAA 185 (279)
T ss_dssp CCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-----
T ss_pred eecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCccc
Confidence 8777889999999997765 68888999999999999 9998544 78888888885 55999999999987654
No 224
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.20 E-value=2.6e-12 Score=125.70 Aligned_cols=59 Identities=17% Similarity=0.115 Sum_probs=43.8
Q ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHHHHHHH-HhCCcEEEEEccCHHH--------HHhhCCEEEEEEC
Q psy7366 494 GNPPLIFLDEPTSGM--DPGARRFLWTCIERA-VSEGRCVILTSHNMEE--------CEALCTKLTIMVN 552 (566)
Q Consensus 494 ~~p~lllLDEPt~gL--D~~~~~~l~~~l~~~-~~~g~tvl~vsHd~~~--------~~~~~drv~~l~~ 552 (566)
.+|+++++|+|+..+ |+.....+...+.++ ++.|.|||+++|.... +..+||.++.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 579999999999988 654444444445444 4569999999998876 5678999999964
No 225
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.19 E-value=1.8e-11 Score=123.87 Aligned_cols=141 Identities=17% Similarity=0.221 Sum_probs=93.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCC
Q psy7366 370 GRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNV 449 (566)
Q Consensus 370 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~ 449 (566)
.+|++++|+||||+||||+++.|++.+.+++|. ++.++.+|+. ..+..+++.....
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~-----------------~V~lv~~D~~---r~~a~eqL~~~~~---- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK-----------------KIAFITTDTY---RIAAVEQLKTYAE---- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-----------------CEEEEECCCS---STTHHHHHHHHHT----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-----------------EEEEEecCcc---cchHHHHHHHHHH----
Confidence 479999999999999999999999999887771 4667777652 2355555543322
Q ss_pred CchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--hC-
Q psy7366 450 PSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV--SE- 526 (566)
Q Consensus 450 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~--~~- 526 (566)
.+++..... .+ +..-+.++++ +.+|+++|+| |+|+|+.....+.++.+-+. ..
T Consensus 159 --------------~~gl~~~~~-----~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~ 214 (296)
T 2px0_A 159 --------------LLQAPLEVC-----YT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSI 214 (296)
T ss_dssp --------------TTTCCCCBC-----SS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTE
T ss_pred --------------hcCCCeEec-----CC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCC
Confidence 223321111 12 2333555554 5899999999 89999877665555444332 12
Q ss_pred CcEEEE-EccCHHHHHhhCCEEEEEECCEEEEe
Q psy7366 527 GRCVIL-TSHNMEECEALCTKLTIMVNGQFTCL 558 (566)
Q Consensus 527 g~tvl~-vsHd~~~~~~~~drv~~l~~G~i~~~ 558 (566)
+..+++ +||+.+++.++|+++..+..+.++..
T Consensus 215 ~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 215 QSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp EEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred eEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 334444 49999999999988766666776653
No 226
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.19 E-value=3e-12 Score=125.96 Aligned_cols=142 Identities=11% Similarity=0.077 Sum_probs=97.7
Q ss_pred CCcchHHHHHhccccCCCccCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChh--hHHHHHHHHHHHc
Q psy7366 1 MGLTTTPKRVVTLLLTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSV--LLNTIVNESLNKF 78 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~~~l~~~ 78 (566)
+||||++|++.+++ |...-. .....|++++|++ +++.+|+.+++.+.......+.. ...+++.+.++.+
T Consensus 36 sGKSTl~k~L~~~l--G~~~~~------~~~~~i~~v~~d~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l 106 (245)
T 2jeo_A 36 SGKSTVCEKIMELL--GQNEVE------QRQRKVVILSQDR-FYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNI 106 (245)
T ss_dssp SSHHHHHHHHHHHH--TGGGSC------GGGCSEEEEEGGG-GBCCCCHHHHHHHHTTCCCTTSGGGBCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh--chhccc------ccCCceEEEeCCc-CccccCHhHhhhhhccCCCCCCcccccHHHHHHHHHHH
Confidence 59999999999977 432211 2235699999995 77789999999775443333211 1233445555543
Q ss_pred CCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHH-Hhhc
Q psy7366 79 ALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC-EALC 157 (566)
Q Consensus 79 gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~-~~~~ 157 (566)
....++++..||+||+||+++ ++++.+|+++|||||...+|+. + .++ .+.+|+++||+...+ ..++
T Consensus 107 --~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~----l----~~~--~~~~i~v~th~~~~~~r~~~ 173 (245)
T 2jeo_A 107 --VEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE----I----RDM--FHLRLFVDTDSDVRLSRRVL 173 (245)
T ss_dssp --HTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH----H----HTT--CSEEEEEECCHHHHHHHHHH
T ss_pred --HCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH----H----HHh--cCeEEEEECCHHHHHHHHHH
Confidence 345678899999999999988 5888999999999998888764 2 222 378999999985444 4455
Q ss_pred CEEEEEeCCE
Q psy7366 158 TKLTIMVNGQ 167 (566)
Q Consensus 158 d~i~vl~~G~ 167 (566)
+++ ++|+
T Consensus 174 r~~---~~G~ 180 (245)
T 2jeo_A 174 RDV---RRGR 180 (245)
T ss_dssp HHT---C---
T ss_pred HHH---HcCC
Confidence 555 6665
No 227
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.19 E-value=3.4e-13 Score=130.57 Aligned_cols=61 Identities=16% Similarity=0.102 Sum_probs=45.7
Q ss_pred CCCCEEEeeCCCCCCCHH-------H-----HHHHHHHHHHHHh-CCCEEEEecCChhH----HHhhcCEEEEEeCCE
Q psy7366 107 GNPPLIFLDEPTSGMDPG-------A-----RRFLWTCIERAVS-EGRCVILTSHNMEE----CEALCTKLTIMVNGQ 167 (566)
Q Consensus 107 ~~p~vLlLDEPt~~LD~~-------~-----~~~l~~~l~~l~~-~g~tviiisH~~~~----~~~~~d~i~vl~~G~ 167 (566)
.+|++|+|||||++||+. + ...+.+.|.++.+ .|.|||++||..++ +..+||++++|++|+
T Consensus 124 ~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 124 RPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp SCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred CceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 499999999999999984 2 2366777777654 59999999996655 899999999998754
No 228
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.18 E-value=1.4e-11 Score=124.97 Aligned_cols=99 Identities=15% Similarity=0.177 Sum_probs=75.7
Q ss_pred eeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHH
Q psy7366 364 QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFY 443 (566)
Q Consensus 364 ~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~ 443 (566)
.+++...+|++++|+|||||||||+++.|++.+++..|+|.+.+.+.... ...++
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~---------------------~a~eq---- 150 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA---------------------AAIEQ---- 150 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH---------------------HHHHH----
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH---------------------HHHHH----
Confidence 34666789999999999999999999999999998888888776553211 00111
Q ss_pred HHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHH---HHHHHHcCCCCEEEEeCCCC
Q psy7366 444 SRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKL---STAIALLGNPPLIFLDEPTS 506 (566)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv---~la~al~~~p~lllLDEPt~ 506 (566)
+..+.+.+++.. +..+|+|+.+++ ++++++..+|+++|+|||..
T Consensus 151 --------------L~~~~~~~gl~~-----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 151 --------------LKIWGERVGATV-----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp --------------HHHHHHHHTCEE-----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred --------------HHHHHHHcCCcE-----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 223445556542 346789999999 89999999999999999975
No 229
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.17 E-value=7.5e-15 Score=143.21 Aligned_cols=178 Identities=13% Similarity=0.058 Sum_probs=69.1
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH-CCCCCCccEEEEcCccCCC-ch-HHhcCceEEEecCCCCCCCCCH
Q psy7366 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT-GAIKPTSGNAYVMNHSIRD-SM-DLVRSYIGYCPQFDALNDRLTP 436 (566)
Q Consensus 360 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~-G~~~~~~G~i~~~g~~~~~-~~-~~~~~~i~~v~q~~~l~~~~tv 436 (566)
+..+++||++++|++++|+||||||||||+++|+ |++++. +.+.+... .. ......++|.++++..+..++.
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~-----~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~ 89 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNI-----VKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCS 89 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----CE-----EECCCEESSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCc-----ccccccCCCCCCccccCCCeEEEecHHHhhhhhh
Confidence 4578999999999999999999999999999999 998541 22222111 00 0001233455554332222222
Q ss_pred HHHHHH----HHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHH-HHH-HHHcCCCCEEEEeCCCCCCCH
Q psy7366 437 REHLEF----YSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKL-STA-IALLGNPPLIFLDEPTSGMDP 510 (566)
Q Consensus 437 ~e~l~~----~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv-~la-~al~~~p~lllLDEPt~gLD~ 510 (566)
.+++.. ....++.+.. .+.+.++.-. .-..+-.+.. ...-++++ .-+ ..++..|+..+++|++...|.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~----~i~~~~~~~~-~vild~~~~g-~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~R~~ 163 (231)
T 3lnc_A 90 NGEIIEHAEVFGNFYGVPRK----NLEDNVDKGV-STLLVIDWQG-AFKFMEMMREHVVSIFIMPPSMEELRRRLCGRRA 163 (231)
T ss_dssp TTCEEEEEEETTEEEEEECT----THHHHHHHTC-EEEEECCHHH-HHHHHHHSGGGEEEEEEECSCHHHHHHC------
T ss_pred cCceehhhhhccccCCCCHH----HHHHHHHcCC-eEEEEcCHHH-HHHHHHhcCCCeEEEEEECCcHHHHHHHHHHcCC
Confidence 111110 0001111111 1223333211 0011100000 01112222 111 123556677788899999998
Q ss_pred HHHHHHHHHHHHHHh-----CCcEEEEEccCHHHHHhhCCEEE
Q psy7366 511 GARRFLWTCIERAVS-----EGRCVILTSHNMEECEALCTKLT 548 (566)
Q Consensus 511 ~~~~~l~~~l~~~~~-----~g~tvl~vsHd~~~~~~~~drv~ 548 (566)
.+.+.+.+.|..... ....+++++|+++++..-+++++
T Consensus 164 ~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i 206 (231)
T 3lnc_A 164 DDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNIL 206 (231)
T ss_dssp --------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHH
Confidence 888777776654321 14578888999988776655544
No 230
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.17 E-value=4.8e-12 Score=143.01 Aligned_cols=123 Identities=20% Similarity=0.168 Sum_probs=86.3
Q ss_pred CCcchHHHHHhccccCCCccCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCC
Q psy7366 1 MGLTTTPKRVVTLLLTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFAL 80 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl 80 (566)
.||||++|++.++.+..+ .|.. . ......+|+++| ++..+++.||+..
T Consensus 587 sGKSTlLr~iagl~~~~~--~G~~-v-pa~~~~i~~v~~---i~~~~~~~d~l~~------------------------- 634 (765)
T 1ewq_A 587 AGKSTFLRQTALIALLAQ--VGSF-V-PAEEAHLPLFDG---IYTRIGASDDLAG------------------------- 634 (765)
T ss_dssp SSHHHHHHHHHHHHHHHT--TTCC-B-SSSEEEECCCSE---EEEECCC-------------------------------
T ss_pred CChHHHHHHHHhhhhhcc--cCce-e-ehhccceeeHHH---hhccCCHHHHHHh-------------------------
Confidence 599999999999875221 1111 1 112345888887 5566777776632
Q ss_pred CcccccccccCChhHHHHHHHHHHH--hCCCCEEEeeCC---CCCCCHHHHH-HHHHHHHHHHhCCCEEEEecCChhHHH
Q psy7366 81 GHYSDREVRTLSGGNKRKLSTAIAL--LGNPPLIFLDEP---TSGMDPGARR-FLWTCIERAVSEGRCVILTSHNMEECE 154 (566)
Q Consensus 81 ~~~~~~~~~~LSgG~kqrl~iA~al--~~~p~vLlLDEP---t~~LD~~~~~-~l~~~l~~l~~~g~tviiisH~~~~~~ 154 (566)
.+|+|+++++.+|+++ +.+|+++||||| |++||+.+.. .+.+.|.+ .|.++|++||+.+..
T Consensus 635 ---------g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~l~- 701 (765)
T 1ewq_A 635 ---------GKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE---RRAYTLFATHYFELT- 701 (765)
T ss_dssp ---------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHHHH-
T ss_pred ---------cccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHHHH-
Confidence 2688999999999999 999999999999 9999999874 57777664 588999999998765
Q ss_pred hhcCEEEEEeCCEEEE
Q psy7366 155 ALCTKLTIMVNGQFTC 170 (566)
Q Consensus 155 ~~~d~i~vl~~G~i~~ 170 (566)
.+| .-.+.++.+..
T Consensus 702 ~~~--~~~v~n~~~~~ 715 (765)
T 1ewq_A 702 ALG--LPRLKNLHVAA 715 (765)
T ss_dssp TCC--CTTEEEEEEEE
T ss_pred Hhh--hhcceEEEEEE
Confidence 455 22344555544
No 231
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.14 E-value=5.2e-12 Score=144.86 Aligned_cols=90 Identities=12% Similarity=0.083 Sum_probs=66.0
Q ss_pred cCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHH-HHHHHHHh-CCCEEEEecCChhHHHh
Q psy7366 78 FALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW-TCIERAVS-EGRCVILTSHNMEECEA 155 (566)
Q Consensus 78 ~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~-~~l~~l~~-~g~tviiisH~~~~~~~ 155 (566)
+|+.+...+..+++|+||+|++.|+++ +.+|+++||||||+||||.....+. .+++.+.+ .|.|||++||+++.+ +
T Consensus 723 ig~~d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~-~ 800 (918)
T 3thx_B 723 MGAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVC-E 800 (918)
T ss_dssp C----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-G
T ss_pred CChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHH-H
Confidence 444445556678899999999999999 8999999999999999999888886 78888765 599999999997654 5
Q ss_pred hcCEEEE-EeCCEEE
Q psy7366 156 LCTKLTI-MVNGQFT 169 (566)
Q Consensus 156 ~~d~i~v-l~~G~i~ 169 (566)
+||+.-- +.++.+.
T Consensus 801 l~~~~~~~v~n~~~~ 815 (918)
T 3thx_B 801 LEKNYSHQVGNYHMG 815 (918)
T ss_dssp HHHHTTTTEEEEEEE
T ss_pred HHhhcccceEEEEEE
Confidence 6776532 4455543
No 232
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.14 E-value=2.6e-12 Score=122.26 Aligned_cols=126 Identities=13% Similarity=0.036 Sum_probs=72.0
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCch-HHhcCceEEEecCCCCCCCCCHHHHHHHHH
Q psy7366 366 SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM-DLVRSYIGYCPQFDALNDRLTPREHLEFYS 444 (566)
Q Consensus 366 sl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~ 444 (566)
|+++.+|++++|+||||||||||+++|+|+++ .+.+.+..+.... ...+..++|+||++..++.+++.+++....
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHA 76 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeee
Confidence 56788999999999999999999999999974 5777776654321 223567899999876666555555433221
Q ss_pred HhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCC
Q psy7366 445 RVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEP 504 (566)
Q Consensus 445 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEP 504 (566)
...+.........+.+.++. +..-..+ +..+-+..++....++.+++++.|
T Consensus 77 ~~~~~~~~~~~~~i~~~l~~-g~~vi~d--------~~~~~~~~~~~~~~~~~~v~~~~~ 127 (205)
T 3tr0_A 77 TIYERHYGTEKDWVLRQLKA-GRDVLLE--------IDWQGARQIRELFPPALSIFILPP 127 (205)
T ss_dssp EETTEEEEEEHHHHHHHHHT-TCEEEEE--------CCHHHHHHHHHHCTTCEEEEEECS
T ss_pred eeecccccchHHHHHHHHHc-CCeEEEE--------ECHHHHHHHHHhCCCcEEEEEECc
Confidence 11111111112233444443 1111111 233444445556667777777766
No 233
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.13 E-value=1.1e-11 Score=140.91 Aligned_cols=131 Identities=18% Similarity=0.193 Sum_probs=89.6
Q ss_pred CCcchHHHHHhccccCCCccCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCC
Q psy7366 1 MGLTTTPKRVVTLLLTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFAL 80 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl 80 (566)
.||||++|++.++.+.++. |.. ... ....+++++| ++..+++.|++..
T Consensus 618 sGKSTlLr~iagl~~~~q~--G~~-vpa-~~~~i~~~~~---i~~~~~~~d~l~~------------------------- 665 (800)
T 1wb9_A 618 GGKSTYMRQTALIALMAYI--GSY-VPA-QKVEIGPIDR---IFTRVGAADDLAS------------------------- 665 (800)
T ss_dssp SSHHHHHHHHHHHHHHHTT--TCC-BSS-SEEEECCCCE---EEEEEC--------------------------------
T ss_pred CChHHHHHHHHHHHHHHhc--Ccc-cch-hcccceeHHH---HHhhCCHHHHHHh-------------------------
Confidence 4999999999998765442 111 111 1235777766 4555666665532
Q ss_pred CcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHH-HHHHHHHHh-CCCEEEEecCChhHHHhhcC
Q psy7366 81 GHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL-WTCIERAVS-EGRCVILTSHNMEECEALCT 158 (566)
Q Consensus 81 ~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l-~~~l~~l~~-~g~tviiisH~~~~~~~~~d 158 (566)
..+++|+++++ ++.+...+.+|+++|||||++|+|+.....+ +.+++.+.+ .|.++|++||+.+.. .+||
T Consensus 666 ------~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~-~l~d 737 (800)
T 1wb9_A 666 ------GRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT-QLPE 737 (800)
T ss_dssp ----------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHH
T ss_pred ------hhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHH-HHhh
Confidence 12346777765 4444556899999999999999999877775 888998877 499999999998665 5899
Q ss_pred EEEEEeCCEEEEe
Q psy7366 159 KLTIMVNGQFTCL 171 (566)
Q Consensus 159 ~i~vl~~G~i~~~ 171 (566)
++..+.+|++...
T Consensus 738 ~~~~v~n~~~~~~ 750 (800)
T 1wb9_A 738 KMEGVANVHLDAL 750 (800)
T ss_dssp HSTTEEEEEEEEE
T ss_pred hhhceEEEEEEEE
Confidence 9888888887654
No 234
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=99.10 E-value=1.7e-10 Score=123.73 Aligned_cols=180 Identities=9% Similarity=0.053 Sum_probs=113.2
Q ss_pred cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCcc-EEEEcCccCCCchHHhcCce-EEEecCCCCCCCCCH
Q psy7366 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG-NAYVMNHSIRDSMDLVRSYI-GYCPQFDALNDRLTP 436 (566)
Q Consensus 359 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~~~~~~~~~~~i-~~v~q~~~l~~~~tv 436 (566)
...|+++..-+++|+++.|.|++|+|||||+..+++...+..| .|.+.+.+... ..+..++ +... ....
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~--~~l~~r~~~~~~-------~~~~ 260 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSA--QQLVMRMLCAEG-------NINA 260 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCH--HHHHHHHHHHHH-------TCCH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCH--HHHHHHHHHHHc-------CCCH
Confidence 3468888878999999999999999999999999987655434 44444333221 0000000 0000 0000
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHc--CCCCEEEEeCCCCCCC-----
Q psy7366 437 REHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL--GNPPLIFLDEPTSGMD----- 509 (566)
Q Consensus 437 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~--~~p~lllLDEPt~gLD----- 509 (566)
+.+ . .+.-......++.+.++.++..+..-.....+|.++.+ ..++.+. .+|+++++|+++...+
T Consensus 261 -~~l----~-~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~ 332 (454)
T 2r6a_A 261 -QNL----R-TGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSK 332 (454)
T ss_dssp -HHH----H-TSCCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC--
T ss_pred -HHH----h-cCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCC
Confidence 001 0 11111222334555666555444433345689999987 4556665 6899999999998774
Q ss_pred ---HHHHHHHHHHHHHHHhC-CcEEEEEcc---------C--HH--------HHHhhCCEEEEEECCEE
Q psy7366 510 ---PGARRFLWTCIERAVSE-GRCVILTSH---------N--ME--------ECEALCTKLTIMVNGQF 555 (566)
Q Consensus 510 ---~~~~~~l~~~l~~~~~~-g~tvl~vsH---------d--~~--------~~~~~~drv~~l~~G~i 555 (566)
......+.+.|+.++++ |++||+++| | +. .+...||.|++|+.++.
T Consensus 333 ~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 333 ENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp --CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 23445677777877765 999999999 3 22 46778999999987654
No 235
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.09 E-value=3.9e-12 Score=131.44 Aligned_cols=80 Identities=21% Similarity=0.348 Sum_probs=71.8
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHh--CCC-----EEEEecCChhHHHhhcC
Q psy7366 86 REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS--EGR-----CVILTSHNMEECEALCT 158 (566)
Q Consensus 86 ~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~--~g~-----tviiisH~~~~~~~~~d 158 (566)
+.+..||+|| |++++| +.+|++ |+||||.....+.++++++.+ .|. ||+++|||++ +.+||
T Consensus 167 d~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d 234 (347)
T 2obl_A 167 DSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGD 234 (347)
T ss_dssp ETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHH
T ss_pred hhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--Chhhh
Confidence 5688999999 899999 688887 999999999999999999864 477 8999999998 67899
Q ss_pred EEEEEeCCEEEEecChhHH
Q psy7366 159 KLTIMVNGQFTCLGSATHL 177 (566)
Q Consensus 159 ~i~vl~~G~i~~~g~~~~~ 177 (566)
++++|.+|+|+.+++..++
T Consensus 235 ~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 235 EVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp HHHHHCSEEEEBCHHHHTT
T ss_pred heEEeeCcEEEEeCCHHHc
Confidence 9999999999998887765
No 236
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.08 E-value=1.1e-12 Score=133.26 Aligned_cols=135 Identities=12% Similarity=0.112 Sum_probs=78.4
Q ss_pred CCcchHHHHHhcc-ccCCCccCCC--CCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q psy7366 1 MGLTTTPKRVVTL-LLTTQKVPGS--NPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNK 77 (566)
Q Consensus 1 ~Gktt~~k~~~~~-~~~~~~~~~~--~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~ 77 (566)
+||||+++++++. +.+...+... ..........+++++|++.++..+|++|+..++..... .......+..+
T Consensus 29 ~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~--~e~~~~l~~~l--- 103 (301)
T 2qnr_A 29 LGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINC--RDCFKTIISYI--- 103 (301)
T ss_dssp SSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-------------CTTHHHHH---
T ss_pred CCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCc--HHHHHHHHHHH---
Confidence 5999999999987 6555432211 11111112458999999888778899888876432210 00001111111
Q ss_pred cCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCC-CCHHHHHHHHHHHHHHHhC-CCEEEEecCChh
Q psy7366 78 FALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSG-MDPGARRFLWTCIERAVSE-GRCVILTSHNME 151 (566)
Q Consensus 78 ~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~-LD~~~~~~l~~~l~~l~~~-g~tviiisH~~~ 151 (566)
....++++.++|||||||+.+|+|++ +|++||||++ ||+... ++++++.+. +.++|+.+||+.
T Consensus 104 ---~~~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 104 ---DEQFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp ---HHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred ---HHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 22346789999999999999998886 9999999985 999874 556666443 789999999984
No 237
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=99.08 E-value=1.6e-10 Score=119.53 Aligned_cols=145 Identities=18% Similarity=0.231 Sum_probs=85.3
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhc
Q psy7366 368 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVR 447 (566)
Q Consensus 368 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~ 447 (566)
-+++|+++.|.||||+|||||+..++.......|. +.|+.-+..+. . . + .
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~------------------vlyi~~E~~~~----~--~--~-a--- 106 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGI------------------AAFIDAEHALD----P--E--Y-A--- 106 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCC------------------EEEEESSCCCC----H--H--H-H---
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCe------------------EEEEECCCCcC----H--H--H-H---
Confidence 47899999999999999999987777544322232 44444332110 0 0 0 0
Q ss_pred CCCchHHHHHHHHHHHHcCCCCccccCc-CcCChhHHHHHHHHHHHcCC--CCEEEEeCCCCCC----------CH---H
Q psy7366 448 NVPSVLLNTIVNESLNKFALGHYSDREV-RTLSGGNKRKLSTAIALLGN--PPLIFLDEPTSGM----------DP---G 511 (566)
Q Consensus 448 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~LSgGqkqrv~la~al~~~--p~lllLDEPt~gL----------D~---~ 511 (566)
..+++... +-.+ ...+. .+-+.++++++.+ |+++++|||++.+ |+ .
T Consensus 107 ---------------~~lG~~~~-~l~i~~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~ 168 (349)
T 2zr9_A 107 ---------------KKLGVDTD-SLLVSQPDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGL 168 (349)
T ss_dssp ---------------HHTTCCGG-GCEEECCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCH
T ss_pred ---------------HHcCCCHH-HeEEecCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhH
Confidence 11111100 0000 11122 2335577777654 9999999999988 33 1
Q ss_pred HHHHHHHHHHHH----HhCCcEEEEEccCHH----------------HHHhhCCEEEEEECCEEEEecC
Q psy7366 512 ARRFLWTCIERA----VSEGRCVILTSHNME----------------ECEALCTKLTIMVNGQFTCLGS 560 (566)
Q Consensus 512 ~~~~l~~~l~~~----~~~g~tvl~vsHd~~----------------~~~~~~drv~~l~~G~i~~~g~ 560 (566)
..+.+.+.++++ .+.|++||+++|... .+..+||.++.++.+++...|+
T Consensus 169 q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 169 QARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred HHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 222344444444 345999999999653 2567899999998876655443
No 238
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.07 E-value=8.1e-11 Score=113.71 Aligned_cols=78 Identities=10% Similarity=-0.007 Sum_probs=66.8
Q ss_pred cCChhHHHHHHHHHHHhCCCC--EEEeeCCCCCC--CHHHHHHHHHHHHHHH-hCCCEEEEecCCh--------hHHHhh
Q psy7366 90 TLSGGNKRKLSTAIALLGNPP--LIFLDEPTSGM--DPGARRFLWTCIERAV-SEGRCVILTSHNM--------EECEAL 156 (566)
Q Consensus 90 ~LSgG~kqrl~iA~al~~~p~--vLlLDEPt~~L--D~~~~~~l~~~l~~l~-~~g~tviiisH~~--------~~~~~~ 156 (566)
..|.++.++...+.+...+|+ +||+||||+.+ |+..+..+.+.|++++ +.|.|||+++|+. ..+..+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~ 182 (235)
T 2w0m_A 103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHV 182 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHH
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchhee
Confidence 458999988888888888999 99999999888 9999999999999985 4699999999999 558999
Q ss_pred cCEEEEEeCCE
Q psy7366 157 CTKLTIMVNGQ 167 (566)
Q Consensus 157 ~d~i~vl~~G~ 167 (566)
||+|++|+...
T Consensus 183 ~d~vi~l~~~~ 193 (235)
T 2w0m_A 183 ADGIIRFRRMI 193 (235)
T ss_dssp CSEEEEEEEEE
T ss_pred eeEEEEEEEEe
Confidence 99999998654
No 239
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.07 E-value=5.1e-11 Score=127.45 Aligned_cols=51 Identities=25% Similarity=0.204 Sum_probs=48.8
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCC
Q psy7366 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 411 (566)
Q Consensus 360 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~ 411 (566)
.+|+++||+|++ ++++|+|||||||||||++|+|+++|++|+|.++|+++.
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA 68 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence 479999999999 999999999999999999999999999999999998774
No 240
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.06 E-value=5.6e-12 Score=139.90 Aligned_cols=148 Identities=12% Similarity=0.135 Sum_probs=94.7
Q ss_pred CCcchHHHHHhccccC-CC-ccCCCCCc--------ccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHH
Q psy7366 1 MGLTTTPKRVVTLLLT-TQ-KVPGSNPT--------IDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTI 70 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~-~~-~~~~~~~~--------~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~ 70 (566)
.||||++++++|++.| +. .+.-.+.. .......|||++|++.+++.+||.+|+.+.....+...
T Consensus 56 sGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~------ 129 (608)
T 3szr_A 56 SGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEG------ 129 (608)
T ss_dssp SCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSS------
T ss_pred ChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCc------
Confidence 5999999999999877 44 22211100 11234579999999999999999999987643221100
Q ss_pred HHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCC------CCCCCHHHHHHHHHHHHHHHh--CCCE
Q psy7366 71 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEP------TSGMDPGARRFLWTCIERAVS--EGRC 142 (566)
Q Consensus 71 ~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEP------t~~LD~~~~~~l~~~l~~l~~--~g~t 142 (566)
-++. ++.+.++.+....|+++|+||| |++||+..+..+.++++++.. .+.+
T Consensus 130 -------~~~s--------------~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~ii 188 (608)
T 3szr_A 130 -------MGIS--------------HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETIS 188 (608)
T ss_dssp -------SCCC--------------SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCE
T ss_pred -------cccc--------------hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCc
Confidence 0111 1112222333458999999999 999999999999999999743 3678
Q ss_pred EEEecCChhHH--------Hhh----cCEEEEEeCCEEEEecChh
Q psy7366 143 VILTSHNMEEC--------EAL----CTKLTIMVNGQFTCLGSAT 175 (566)
Q Consensus 143 viiisH~~~~~--------~~~----~d~i~vl~~G~i~~~g~~~ 175 (566)
+++++|+++.+ ..+ +..|+|+.++.++..|+.+
T Consensus 189 l~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~ 233 (608)
T 3szr_A 189 LVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTED 233 (608)
T ss_dssp EEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTT
T ss_pred eEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHH
Confidence 99999997622 222 3668888888877666543
No 241
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=99.06 E-value=6.3e-12 Score=135.38 Aligned_cols=173 Identities=9% Similarity=0.037 Sum_probs=107.2
Q ss_pred eeeEEEeCCcEEEEEcCCCCcHHHHHHHHHC--CCCCCccEEEEcCccCCCch-HHhcCceEEEecCCCCCCC--CCHHH
Q psy7366 364 QISFGVGRGECFGLLGLNGAGKTTTFKMLTG--AIKPTSGNAYVMNHSIRDSM-DLVRSYIGYCPQFDALNDR--LTPRE 438 (566)
Q Consensus 364 ~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G--~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~v~q~~~l~~~--~tv~e 438 (566)
.+++++.++..+.|.|++||||||+++.|.. +++++.|++.+.+.+.+... ..+ . .-|++... ..+.+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~-~------~lPhl~~~Vvtd~~~ 231 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVY-E------GIPHLLTEVVTDMKD 231 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGG-T------TCTTBSSSCBCSHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhh-c------cCCcccceeecCHHH
Confidence 4678889999999999999999999999876 56666687777665543210 000 0 01222110 12222
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHcCCCCccc---cCcCcCChhHHHHH----------HHHHHHcCCCC-EEEEeCC
Q psy7366 439 HLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSD---REVRTLSGGNKRKL----------STAIALLGNPP-LIFLDEP 504 (566)
Q Consensus 439 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~~LSgGqkqrv----------~la~al~~~p~-lllLDEP 504 (566)
-..... ....+.+++ .+++...|+.+..+ +....+|+||+|+. .+++++...|. ++++||+
T Consensus 232 a~~~L~----~~~~EmerR-~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~ 306 (512)
T 2ius_A 232 AANALR----WCVNEMERR-YKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEF 306 (512)
T ss_dssp HHHHHH----HHHHHHHHH-HHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETH
T ss_pred HHHHHH----HHHHHHHHH-HHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCH
Confidence 111111 112234444 36788888875432 22356899998752 34566677887 8999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh----CCcEEEEEccCHH-------HHHhhCCEEEE
Q psy7366 505 TSGMDPGARRFLWTCIERAVS----EGRCVILTSHNME-------ECEALCTKLTI 549 (566)
Q Consensus 505 t~gLD~~~~~~l~~~l~~~~~----~g~tvl~vsHd~~-------~~~~~~drv~~ 549 (566)
+.-+|.. ...+.+.|.++++ .|.++|++||++. ....+.+||.+
T Consensus 307 ~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 307 ADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred HHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 9988843 3445555655532 2789999999987 44566667655
No 242
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.01 E-value=5.3e-11 Score=123.25 Aligned_cols=59 Identities=20% Similarity=0.219 Sum_probs=49.6
Q ss_pred HHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhcCEEEEEeCC
Q psy7366 100 STAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNG 166 (566)
Q Consensus 100 ~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~d~i~vl~~G 166 (566)
+||+||..+|++|++|||| |++..+.+ .+++..|.+||+++|+.+.+ ..|||+++|..|
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~~~~~----~~~~~~G~~vl~t~H~~~~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLETIRLA----LTAAETGHLVFGTLHTTSAA-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHHHHH----HHHHHTTCEEEEEESCSSHH-HHHHHHHHTSCH
T ss_pred HHHHHhhhCcCEEecCCCC---CHHHHHHH----HHHHhcCCEEEEEEccChHH-HHHHHHhhhcCc
Confidence 9999999999999999999 66664443 44456799999999999988 679999988654
No 243
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.01 E-value=5.7e-12 Score=118.98 Aligned_cols=144 Identities=15% Similarity=0.053 Sum_probs=88.5
Q ss_pred CCcchHHHHHhccccCCCccCCCC--C-cccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q psy7366 1 MGLTTTPKRVVTLLLTTQKVPGSN--P-TIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNK 77 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~~~~~~~--~-~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~ 77 (566)
+||||+++++++.+. .+.+.-.+ . ......+.+||++|+. ... .+++ ... ..... .
T Consensus 12 ~GKTTll~~l~g~~~-~~Gi~~~g~~~~~~~~~~~~ig~~~~~~--~g~---~~~l---~~~-~~~~~-----------~ 70 (189)
T 2i3b_A 12 VGKTTLIHKASEVLK-SSGVPVDGFYTEEVRQGGRRIGFDVVTL--SGT---RGPL---SRV-GLEPP-----------P 70 (189)
T ss_dssp SCHHHHHHHHHHHHH-HTTCCCEEEECCEEETTSSEEEEEEEET--TSC---EEEE---EEC-CCCCC-----------S
T ss_pred ChHHHHHHHHHhhcc-cCCEEEcCEecchhHhhhceEEEEEEec--ccc---eehh---hcc-cccCC-----------c
Confidence 599999999999885 22121100 0 1112345799999985 111 0111 000 00000 0
Q ss_pred cCCCcccccccccCChhHHHHH-HHHH---HHhCCCCEEEeeC--CCCCCCHHHHHHHHHHHHHHHhCCCEEE----Eec
Q psy7366 78 FALGHYSDREVRTLSGGNKRKL-STAI---ALLGNPPLIFLDE--PTSGMDPGARRFLWTCIERAVSEGRCVI----LTS 147 (566)
Q Consensus 78 ~gl~~~~~~~~~~LSgG~kqrl-~iA~---al~~~p~vLlLDE--Pt~~LD~~~~~~l~~~l~~l~~~g~tvi----iis 147 (566)
..-.....++...+|+|||+++ ++++ |++.+|+|||||| |++.+|+...+.|.++++ ...++| .+|
T Consensus 71 ~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~----~~~~~ilgti~vs 146 (189)
T 2i3b_A 71 GKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS----TPGTIILGTIPVP 146 (189)
T ss_dssp SSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH----CSSCCEEEECCCC
T ss_pred cccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh----CCCcEEEEEeecC
Confidence 0001134556778999999888 4444 6899999999999 999999988777777765 333444 345
Q ss_pred CChhHHHhhcCEEEEEeCCEEEEe
Q psy7366 148 HNMEECEALCTKLTIMVNGQFTCL 171 (566)
Q Consensus 148 H~~~~~~~~~d~i~vl~~G~i~~~ 171 (566)
|+.+ ..++|+|..+.+|+++..
T Consensus 147 h~~~--~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 147 KGKP--LALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp CSSC--CTTHHHHHTTCCSEEEEC
T ss_pred CCCc--hHHHHHHeecCCcEEEEe
Confidence 9984 346677777788888753
No 244
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.00 E-value=1.2e-09 Score=104.78 Aligned_cols=79 Identities=11% Similarity=0.014 Sum_probs=62.0
Q ss_pred cccCChhH--HHHHHHHHHHhCC-CCEEEeeCCCCCCCHHH--------HHHHHHHHHHHHh-CCCEEEEecCChh----
Q psy7366 88 VRTLSGGN--KRKLSTAIALLGN-PPLIFLDEPTSGMDPGA--------RRFLWTCIERAVS-EGRCVILTSHNME---- 151 (566)
Q Consensus 88 ~~~LSgG~--kqrl~iA~al~~~-p~vLlLDEPt~~LD~~~--------~~~l~~~l~~l~~-~g~tviiisH~~~---- 151 (566)
+.++|+++ +++++.+++++.+ |+++|+||||+.+|+.. ...+.+.|+++.+ .|.|||+++|...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~ 161 (220)
T 2cvh_A 82 LFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRT 161 (220)
T ss_dssp EECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTT
T ss_pred EEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCC
Confidence 45566665 5678888899986 99999999999999843 2445555777754 4999999999876
Q ss_pred ---------HHHhhcCEEEEEeCC
Q psy7366 152 ---------ECEALCTKLTIMVNG 166 (566)
Q Consensus 152 ---------~~~~~~d~i~vl~~G 166 (566)
.+..+||+|++|+..
T Consensus 162 ~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 162 EMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp SSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred CccccCCCcceeecCcEEEEEEEe
Confidence 678899999999865
No 245
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.99 E-value=1.4e-11 Score=124.98 Aligned_cols=133 Identities=13% Similarity=0.014 Sum_probs=88.8
Q ss_pred CCcchHHHHHhccccCCCc---cCCCCCccc---------ccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHH
Q psy7366 1 MGLTTTPKRVVTLLLTTQK---VPGSNPTID---------KNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLN 68 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~~---~~~~~~~~~---------~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~ 68 (566)
+||||+++.+.+++.+... +.+.+.... ....+|++++|++.+++.+++.+++.+... .+.+.
T Consensus 113 sGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~~~-~~~d~---- 187 (304)
T 1rj9_A 113 VGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAMKA-RGYDL---- 187 (304)
T ss_dssp SSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHHH-HTCSE----
T ss_pred CcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHh-CCCCE----
Confidence 5999999999999876541 222221110 012469999999998888899999976532 11110
Q ss_pred HHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEec
Q psy7366 69 TIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTS 147 (566)
Q Consensus 69 ~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiis 147 (566)
.+++..|..+..+..+.+|| +||++||||++.+|+.++| .||+.+...+.+.++++.+. |.|+|++|
T Consensus 188 ----~llDt~G~~~~~~~~~~eLs---~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~iivT 255 (304)
T 1rj9_A 188 ----LFVDTAGRLHTKHNLMEELK---KVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVIVT 255 (304)
T ss_dssp ----EEECCCCCCTTCHHHHHHHH---HHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEEEE
T ss_pred ----EEecCCCCCCchHHHHHHHH---HHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEEEE
Confidence 12344455444445556655 8999999999999994444 45555555666666776554 89999999
Q ss_pred CCh
Q psy7366 148 HNM 150 (566)
Q Consensus 148 H~~ 150 (566)
|+.
T Consensus 256 h~d 258 (304)
T 1rj9_A 256 KLD 258 (304)
T ss_dssp CTT
T ss_pred CCc
Confidence 984
No 246
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.96 E-value=3e-13 Score=135.70 Aligned_cols=127 Identities=13% Similarity=0.144 Sum_probs=87.3
Q ss_pred cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCceEEEecCCC-CCCCCCH
Q psy7366 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSYIGYCPQFDA-LNDRLTP 436 (566)
Q Consensus 359 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~i~~v~q~~~-l~~~~tv 436 (566)
..+++++++++++| ++|+||||+|||||+++|++... .|.|.+++.++.. ......+.+++++|... ..+.+++
T Consensus 62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~ 137 (278)
T 1iy2_A 62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVF 137 (278)
T ss_dssp HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEe
Confidence 45789999999999 88999999999999999999886 7899999876521 11122334667777642 4556677
Q ss_pred HHHHHHHHHhcCC----CchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCC
Q psy7366 437 REHLEFYSRVRNV----PSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEP 504 (566)
Q Consensus 437 ~e~l~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEP 504 (566)
.|++......... ........+.. .+.+|||||+|++.+++|+..+|++ +|++
T Consensus 138 iDeid~l~~~~~~~~~~~~~~~~~~~~~-------------ll~~lsgg~~~~~~i~~a~t~~p~~--ld~~ 194 (278)
T 1iy2_A 138 IDEIDAVGRKRGSGVGGGNDEREQTLNQ-------------LLVEMDGFEKDTAIVVMAATNRPDI--LDPA 194 (278)
T ss_dssp EETHHHHHCC--------CHHHHHHHHH-------------HHHHHTTCCTTCCEEEEEEESCTTS--SCHH
T ss_pred hhhhHhhhcccccccCCcchHHHHHHHH-------------HHHHHhCCCCCCCEEEEEecCCchh--CCHh
Confidence 7777443211110 11111222222 2456899999999999999999987 6766
No 247
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.94 E-value=2.9e-11 Score=125.16 Aligned_cols=80 Identities=15% Similarity=0.068 Sum_probs=49.4
Q ss_pred ChhHHHHHHHHHHHh-------CCCCEEEeeCCCCCCCHHH------------HHHHHHHHHHHHh-CCCEEEEecCChh
Q psy7366 92 SGGNKRKLSTAIALL-------GNPPLIFLDEPTSGMDPGA------------RRFLWTCIERAVS-EGRCVILTSHNME 151 (566)
Q Consensus 92 SgG~kqrl~iA~al~-------~~p~vLlLDEPt~~LD~~~------------~~~l~~~l~~l~~-~g~tviiisH~~~ 151 (566)
|.+++|++.++++++ .+|++||+||||++||+.. ..++...|+++.+ .|.|||+++|...
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~ 287 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA 287 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence 456677777777776 7999999999999999862 4556666666644 5999999999988
Q ss_pred HHHhhcCEEEEEeCCEEEEe
Q psy7366 152 ECEALCTKLTIMVNGQFTCL 171 (566)
Q Consensus 152 ~~~~~~d~i~vl~~G~i~~~ 171 (566)
....+++.+.+...|+++..
T Consensus 288 ~~~~~~~~~~~~~~G~~l~~ 307 (349)
T 1pzn_A 288 RPDAFFGDPTRPIGGHILAH 307 (349)
T ss_dssp --------------CCCCCT
T ss_pred ccccccCCccccCCcceEee
Confidence 76654455556666665533
No 248
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.93 E-value=2.7e-11 Score=117.52 Aligned_cols=74 Identities=22% Similarity=0.228 Sum_probs=51.2
Q ss_pred eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-c-------
Q psy7366 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-S------- 413 (566)
Q Consensus 342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~------- 413 (566)
.|+++|+...|+ . +|++.+ ++++|+|||||||||||++|+|++.|++|+|.++|.++.. .
T Consensus 9 ~l~l~~~~~~~~-----~------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (227)
T 1qhl_A 9 SLTLINWNGFFA-----R------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKG 76 (227)
T ss_dssp EEEEEEETTEEE-----E------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------
T ss_pred EEEEEeeecccC-----C------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccc
Confidence 477888765442 1 566667 8999999999999999999999999999999999988732 1
Q ss_pred -hHHhcCceEEEecC
Q psy7366 414 -MDLVRSYIGYCPQF 427 (566)
Q Consensus 414 -~~~~~~~i~~v~q~ 427 (566)
....+..++|++|+
T Consensus 77 ~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 77 LHGKLKAGVCYSMLD 91 (227)
T ss_dssp CGGGBCSSEEEEEEE
T ss_pred hhhHhhcCcEEEEEe
Confidence 11235679999974
No 249
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.93 E-value=7.8e-13 Score=130.65 Aligned_cols=141 Identities=13% Similarity=0.135 Sum_probs=94.0
Q ss_pred cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC-chHHhcCceEEEecCCC-CCCCCCH
Q psy7366 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSYIGYCPQFDA-LNDRLTP 436 (566)
Q Consensus 359 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~i~~v~q~~~-l~~~~tv 436 (566)
..+++++++++++| ++|+||||+|||||+++|++... .|.|.+++.++.. ......+.+++++|... ..+.+++
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~ 113 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVF 113 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEE
Confidence 45788999999999 88999999999999999999876 7899999876521 11112234667777642 4555677
Q ss_pred HHHHHHHHHhcCC----CchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCC------
Q psy7366 437 REHLEFYSRVRNV----PSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTS------ 506 (566)
Q Consensus 437 ~e~l~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~------ 506 (566)
.|++......... ......+.+.++ +..|||||+||+.+++|+..+|++ +|++..
T Consensus 114 ~Deid~l~~~~~~~~~~~~~~~~~~~~~l-------------l~~l~g~~~~~~~i~~a~t~~p~~--ld~~l~r~~rf~ 178 (254)
T 1ixz_A 114 IDEIDAVGRKRGSGVGGGNDEREQTLNQL-------------LVEMDGFEKDTAIVVMAATNRPDI--LDPALLRPGRFD 178 (254)
T ss_dssp EETHHHHHC---------CHHHHHHHHHH-------------HHHHHTCCTTCCEEEEEEESCGGG--SCGGGGSTTSSC
T ss_pred ehhhhhhhcccCccccccchHHHHHHHHH-------------HHHHhCCCCCCCEEEEEccCCchh--CCHHHcCCCcCC
Confidence 7777433211110 111112222222 346899999999999999999987 677653
Q ss_pred ------CCCHHHHHHHHH
Q psy7366 507 ------GMDPGARRFLWT 518 (566)
Q Consensus 507 ------gLD~~~~~~l~~ 518 (566)
-.|...+..+++
T Consensus 179 ~~i~i~~p~~~~r~~il~ 196 (254)
T 1ixz_A 179 RQIAIDAPDVKGREQILR 196 (254)
T ss_dssp EEEECCSCCHHHHHHHHH
T ss_pred eEEeeCCcCHHHHHHHHH
Confidence 235666666554
No 250
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.91 E-value=2.1e-10 Score=113.82 Aligned_cols=60 Identities=18% Similarity=0.173 Sum_probs=51.1
Q ss_pred HHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhcCEEEEEeC
Q psy7366 98 KLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVN 165 (566)
Q Consensus 98 rl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~d~i~vl~~ 165 (566)
+++||+||..+|++|+||||| |+.+...+ ++. ...|.+|++++|+.+ +...|||+++|..
T Consensus 88 ~~~la~aL~~~p~illlDEp~---D~~~~~~~---l~~-~~~g~~vl~t~H~~~-~~~~~dri~~l~~ 147 (261)
T 2eyu_A 88 ADALRAALREDPDVIFVGEMR---DLETVETA---LRA-AETGHLVFGTLHTNT-AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHHHHHHHCCSEEEESCCC---SHHHHHHH---HHH-HHTTCEEEEEECCSS-HHHHHHHHHHTSC
T ss_pred HHHHHHHHhhCCCEEEeCCCC---CHHHHHHH---HHH-HccCCEEEEEeCcch-HHHHHHHHhhhcC
Confidence 899999999999999999999 99886654 443 356999999999987 6678999988854
No 251
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.88 E-value=2.9e-11 Score=134.34 Aligned_cols=158 Identities=12% Similarity=0.101 Sum_probs=101.0
Q ss_pred CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCc-cEEEEcCccCCCchHHhcCceEEEecCCC-------
Q psy7366 358 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS-GNAYVMNHSIRDSMDLVRSYIGYCPQFDA------- 429 (566)
Q Consensus 358 ~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~-G~i~~~g~~~~~~~~~~~~~i~~v~q~~~------- 429 (566)
...+++++++.+.+|+.++|+||||+|||||+++|+++.++.. |.+.+.+.+... ....++|+|+...
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~----~~p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDE----NMPRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCT----TSCEEEEEETTHHHHHHHHH
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccc----cCCcEEEEecchHHHHHHHH
Confidence 5668899999999999999999999999999999999999887 788888876542 2335888876431
Q ss_pred ---------------CCCCCCHHHHHHHHHH-hcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHc
Q psy7366 430 ---------------LNDRLTPREHLEFYSR-VRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL 493 (566)
Q Consensus 430 ---------------l~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~ 493 (566)
.+..+++.+|+..... ..+.+-.. .......+.+|.-+........+|+|++|++..++...
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~--~~~~~~~~L~G~~~~~~~~~g~~~~g~~~~i~~g~~~~ 199 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFID--ATGAHAGALLGDVRHDPFQSGGLGTPAHERVEPGMIHR 199 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCTTCSSCCEEE--CTTCCHHHHHCEECCCCC----CCCCGGGGEECCHHHH
T ss_pred HHhhccchhhhhhcccccccccccceeeccccCCCCCEEE--cCCCCHHhcCceEEechhhcCCccccccccccCceeee
Confidence 0111111111100000 00000000 00001112222211112233679999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy7366 494 GNPPLIFLDEPTSGMDPGARRFLWTCIER 522 (566)
Q Consensus 494 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 522 (566)
.++.+|+|||... |++..+..+.+.|.+
T Consensus 200 a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 200 AHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp TTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred cCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999988 899999999888875
No 252
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.82 E-value=1.4e-10 Score=109.18 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=32.7
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy7366 485 KLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 522 (566)
Q Consensus 485 rv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 522 (566)
.+.+|++++.+|+++++| ||++|..+..++++.|.+
T Consensus 153 ~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 153 PTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 467899999999999999 999999999999988865
No 253
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.80 E-value=3.8e-13 Score=126.71 Aligned_cols=160 Identities=18% Similarity=0.126 Sum_probs=98.5
Q ss_pred CCcchHHHHHhccccCCC-ccCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHHcC
Q psy7366 1 MGLTTTPKRVVTLLLTTQ-KVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFA 79 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~-~~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g 79 (566)
.||||++|.+.+-. .|. .+.+.. ......+|+++|....+...++.+++.+.......... ..+++.+.
T Consensus 13 aGKSTl~~~L~~~~-~g~~~i~~d~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------~~ild~~~ 82 (189)
T 2bdt_A 13 VGKSTTCKRLAAQL-DNSAYIEGDI---INHMVVGGYRPPWESDELLALTWKNITDLTVNFLLAQN------DVVLDYIA 82 (189)
T ss_dssp SSHHHHHHHHHHHS-SSEEEEEHHH---HHTTCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTC------EEEEESCC
T ss_pred CcHHHHHHHHhccc-CCeEEEcccc---hhhhhccccccCccchhHHHHHHHHHHHHHHHHHhcCC------cEEEeecc
Confidence 59999999998722 222 111100 01112467788766444556788887665332100000 00111110
Q ss_pred CCcccccccccC--ChhHHHHHHHHH------HHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCC-h
Q psy7366 80 LGHYSDREVRTL--SGGNKRKLSTAI------ALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN-M 150 (566)
Q Consensus 80 l~~~~~~~~~~L--SgG~kqrl~iA~------al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~-~ 150 (566)
.....+.+.++ |+|++|++.++. ++..+|+...+|+ +||+..+.. ++.+..+.+.+.+||.+||. +
T Consensus 83 -~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~ 157 (189)
T 2bdt_A 83 -FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFYNTSHLQP 157 (189)
T ss_dssp -CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCG
T ss_pred -CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEEeCCCCCh
Confidence 11111223345 899999988888 8999999888884 899999988 88888876668899999999 9
Q ss_pred hHHHhhcCEEEEEeCCEEEEecChhHH
Q psy7366 151 EECEALCTKLTIMVNGQFTCLGSATHL 177 (566)
Q Consensus 151 ~~~~~~~d~i~vl~~G~i~~~g~~~~~ 177 (566)
++++++||+|+ ++|+++..|+++-+
T Consensus 158 ~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 158 TNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp GGHHHHHHHHH--HCGGGSCC------
T ss_pred hhHHHHHHHHh--hCCcEEEeecCCch
Confidence 99999999998 99999988877644
No 254
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.78 E-value=3.4e-10 Score=119.46 Aligned_cols=132 Identities=14% Similarity=0.104 Sum_probs=75.3
Q ss_pred CCcchHHHHHhccccCCCccCCCCC--cccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHHc
Q psy7366 1 MGLTTTPKRVVTLLLTTQKVPGSNP--TIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKF 78 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~~~~~~~~--~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~ 78 (566)
+||||+++++++...+.....+... ........+++++|++.++..+||+|++.+...... ...+..+.+.++
T Consensus 42 aGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~---~~~~~~i~~~i~-- 116 (418)
T 2qag_C 42 LGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN---SNCWQPVIDYID-- 116 (418)
T ss_dssp SSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC--------------CHHHHHHHH--
T ss_pred CcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccc---hhhHHHHHHHHH--
Confidence 5999999999998873221111100 001112458999999988888999999877543211 111122222222
Q ss_pred CCCcccccccccCChhHHHHHHHHHHHhCCCC---EEEeeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhH
Q psy7366 79 ALGHYSDREVRTLSGGNKRKLSTAIALLGNPP---LIFLDEPT-SGMDPGARRFLWTCIERAVSEGRCVILTSHNMEE 152 (566)
Q Consensus 79 gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~---vLlLDEPt-~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~ 152 (566)
..++.+++|+++||++++.+|+ +|++|||| ++||+....+ ++.+. .+..||+|.|..+.
T Consensus 117 ----------~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~----lk~L~-~~v~iIlVinK~Dl 179 (418)
T 2qag_C 117 ----------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEF----MKRLH-EKVNIIPLIAKADT 179 (418)
T ss_dssp ----------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHH----HHHHT-TTSEEEEEEESTTS
T ss_pred ----------HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHH----HHHHh-ccCcEEEEEEcccC
Confidence 1355677889999999999999 99999999 6999988544 45553 47888888887543
No 255
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.77 E-value=7.6e-09 Score=106.77 Aligned_cols=147 Identities=16% Similarity=0.124 Sum_probs=85.1
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEE-EEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHh
Q psy7366 368 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA-YVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRV 446 (566)
Q Consensus 368 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~ 446 (566)
-+++|+++.|.||||||||||+..+++...+..|.| +++++...... +.+++|+.+|+..+....++.+.+...
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~--ra~rlgv~~~~l~i~~~~~~e~~l~~~--- 131 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPV--YAKNLGVDLKSLLISQPDHGEQALEIV--- 131 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH--HHHHHTCCGGGCEEECCSSHHHHHHHH---
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchH--HHHHcCCchhhhhhhhccCHHHHHHHH---
Confidence 378999999999999999999999998877766765 55555433221 223456555554433334554433221
Q ss_pred cCCCchHHHHHHHHHHHHcCC-----CCccccCc-CcCCh--hHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHH
Q psy7366 447 RNVPSVLLNTIVNESLNKFAL-----GHYSDREV-RTLSG--GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 518 (566)
Q Consensus 447 ~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~-~~LSg--Gqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~ 518 (566)
..++..... +......+ .+++| |++|++..||++. .++.
T Consensus 132 ------------~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la---------------------~~L~ 178 (356)
T 3hr8_A 132 ------------DELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMS---------------------QALR 178 (356)
T ss_dssp ------------HHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHH---------------------HHHH
T ss_pred ------------HHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHH---------------------HHHH
Confidence 111111110 11111111 22322 4444444444443 4555
Q ss_pred HHHHHHhC-CcEEEEEccCH----------------HHHHhhCCEEEEEEC
Q psy7366 519 CIERAVSE-GRCVILTSHNM----------------EECEALCTKLTIMVN 552 (566)
Q Consensus 519 ~l~~~~~~-g~tvl~vsHd~----------------~~~~~~~drv~~l~~ 552 (566)
.|..++++ +.+||++.|-. .-+..++|.++.|..
T Consensus 179 ~L~~lak~~~~tVI~inqv~~k~g~~fg~p~~~~GG~~l~h~~~~rl~l~k 229 (356)
T 3hr8_A 179 KIAGSVNKSKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRMEVRR 229 (356)
T ss_dssp HHHHHHHTSSCEEEEEEESSSCSSSSSCSCSSCTHHHHHHHHCSEEEEEEE
T ss_pred HHHHHHHhcCCEEEEEeeeeeccccccCCcccCCCcchhhhhCcEEEEEEe
Confidence 66666655 89999998872 225678899998875
No 256
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.73 E-value=1.9e-10 Score=111.05 Aligned_cols=125 Identities=13% Similarity=0.119 Sum_probs=79.7
Q ss_pred CCcchHHHHHhccccCC----C-ccCCCCCcccccccceeEEcCCCCCCCCCCH----HHHHHHHHHhcCCChhhHHHHH
Q psy7366 1 MGLTTTPKRVVTLLLTT----Q-KVPGSNPTIDKNLSYIGYCPQFDALNDRLTP----REHLEFYSRVRNVPSVLLNTIV 71 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~----~-~~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv----~e~l~~~~~~~~~~~~~~~~~~ 71 (566)
+||||++|++++.+.++ . .+++..+.. ....+++|+||++.+|+.+++ .|++.+....++.+
T Consensus 27 sGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~-~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~yg~~-------- 97 (219)
T 1s96_A 27 AGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP-GEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYGTS-------- 97 (219)
T ss_dssp SCHHHHHHHHHHHSCTTTEEECCCEECSCCCT-TCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEE--------
T ss_pred CCHHHHHHHHhccCCCCceEEEEEecCCCCCc-ccccCceEEECCHHHHHHHHhcCHHHHHHHHHhccCCCC--------
Confidence 59999999999988542 1 122222211 123469999998765544444 22222111111111
Q ss_pred HHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChh
Q psy7366 72 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 151 (566)
Q Consensus 72 ~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~ 151 (566)
++. +..++..++++||| ||+.++..+++.+. +|.||+++||+++
T Consensus 98 ------------------------~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~----~~~tI~i~th~~~ 141 (219)
T 1s96_A 98 ------------------------REA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP----HARSIFILPPSKI 141 (219)
T ss_dssp ------------------------HHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT----TCEEEEEECSSHH
T ss_pred ------------------------HHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc----CCEEEEEECCCHH
Confidence 111 23334457999999 99999999998875 5899999999999
Q ss_pred HHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy7366 152 ECEALCTKLTIMVNGQFTCLGSATHLKS 179 (566)
Q Consensus 152 ~~~~~~d~i~vl~~G~i~~~g~~~~~~~ 179 (566)
++.. |+ +.+| .++++++..
T Consensus 142 ~l~~---Rl--~~rG----~~~~e~i~~ 160 (219)
T 1s96_A 142 ELDR---RL--RGRG----QDSEEVIAK 160 (219)
T ss_dssp HHHH---HH--HTTS----CSCHHHHHH
T ss_pred HHHH---HH--HHcC----CCCHHHHHH
Confidence 9876 43 6667 567777654
No 257
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.70 E-value=7.3e-10 Score=105.24 Aligned_cols=73 Identities=12% Similarity=0.070 Sum_probs=51.6
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHH
Q psy7366 366 SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEF 442 (566)
Q Consensus 366 sl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~ 442 (566)
.++.++|++++|+||||||||||+++|+|.+ |.+.+++.++.......+..+++++|++..++.+++.+++..
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 95 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMD 95 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHH
Confidence 3566899999999999999999999999976 899999988754322223346788887655555566666543
No 258
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.65 E-value=2.8e-09 Score=112.17 Aligned_cols=144 Identities=15% Similarity=0.134 Sum_probs=94.1
Q ss_pred CCcchHHHHHhccccCCCccCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcC-CCh----hhHHHHHHHHH
Q psy7366 1 MGLTTTPKRVVTLLLTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRN-VPS----VLLNTIVNESL 75 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~-~~~----~~~~~~~~~~l 75 (566)
.||||++|+++|..+.|..+....+. .....++|++|++.+++.+||.|++.|+..... ... ..+..+..+++
T Consensus 53 aGKSTLln~L~G~~l~g~~~~~~~~~--~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L 130 (427)
T 2qag_B 53 LGKSTLMDTLFNTKFEGEPATHTQPG--VQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYL 130 (427)
T ss_dssp SSSHHHHHHHHTSCC-------CCSS--CEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCccccCCcCCCCCcc--ceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHH
Confidence 59999999999998877654332221 123469999999988888999998866432110 001 12345566666
Q ss_pred HHc-CCCc----ccccc----c-------ccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHH-HHh
Q psy7366 76 NKF-ALGH----YSDRE----V-------RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER-AVS 138 (566)
Q Consensus 76 ~~~-gl~~----~~~~~----~-------~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~-l~~ 138 (566)
... ++.. ..+.. + ..|+... +.|+++|..++.|+++|||+..|.+.....+.+.+++ +..
T Consensus 131 ~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~ 207 (427)
T 2qag_B 131 QEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVS 207 (427)
T ss_dssp HHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBT
T ss_pred HHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHH
Confidence 665 5431 12222 1 2455555 7999999999999999999999999999999999997 877
Q ss_pred CCCEEEEecCC
Q psy7366 139 EGRCVILTSHN 149 (566)
Q Consensus 139 ~g~tviiisH~ 149 (566)
.|..|+++|.+
T Consensus 208 ~gi~I~~is~~ 218 (427)
T 2qag_B 208 NGVQIYQFPTD 218 (427)
T ss_dssp TBCCCCCCC--
T ss_pred cCCcEEecCCC
Confidence 89999999964
No 259
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.63 E-value=5.9e-10 Score=105.42 Aligned_cols=36 Identities=22% Similarity=0.216 Sum_probs=31.5
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy7366 486 LSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERA 523 (566)
Q Consensus 486 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 523 (566)
...|++++.+|+++++| ||++|......+++.|.+.
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTE 165 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHH
Confidence 35588999999999999 9999999999999888664
No 260
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.62 E-value=3.6e-09 Score=109.94 Aligned_cols=139 Identities=18% Similarity=0.164 Sum_probs=84.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCC-----------CCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHH---
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGAIK-----------PTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREH--- 439 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~~~-----------~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~--- 439 (566)
+++|+|++|||||||++.|+|... |..|.|.++|.++.- ....|++.+.+. ..+...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l-----~DT~G~i~~lp~----~lve~f~~t 251 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIML-----VDTVGFIRGIPP----QIVDAFFVT 251 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEE-----EECCCBCSSCCG----GGHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEE-----EeCCCchhcCCH----HHHHHHHHH
Confidence 489999999999999999999876 567888888754310 112333333221 111110
Q ss_pred HHHHHH------hcCCCc-h----HHHHHHHHHHHHcCCCCcc----ccCcCcCChhHHHHHHHH----HHH-cCCCCEE
Q psy7366 440 LEFYSR------VRNVPS-V----LLNTIVNESLNKFALGHYS----DREVRTLSGGNKRKLSTA----IAL-LGNPPLI 499 (566)
Q Consensus 440 l~~~~~------~~~~~~-~----~~~~~~~~~l~~~~l~~~~----~~~~~~LSgGqkqrv~la----~al-~~~p~ll 499 (566)
+..... ...... . .....+.++++.+++.+.. ..++..+|+|+++++.++ +++ ..+|++
T Consensus 252 l~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~- 330 (364)
T 2qtf_A 252 LSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV- 330 (364)
T ss_dssp HHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE-
T ss_pred HHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE-
Confidence 110000 001111 1 1122345677777765432 456788999988888877 665 444454
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy7366 500 FLDEPTSGMDPGARRFLWTCIERAVS 525 (566)
Q Consensus 500 lLDEPt~gLD~~~~~~l~~~l~~~~~ 525 (566)
+|+|++|......+++.|.++..
T Consensus 331 ---~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 331 ---IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp ---EECBTTTTBSHHHHHHHHHHHHH
T ss_pred ---EEEECCCCcCHHHHHHHHHHHhc
Confidence 89999999999999999887643
No 261
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.56 E-value=1.5e-10 Score=120.63 Aligned_cols=136 Identities=13% Similarity=0.082 Sum_probs=82.9
Q ss_pred cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCC-CCCCCCHH
Q psy7366 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDA-LNDRLTPR 437 (566)
Q Consensus 359 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~-l~~~~tv~ 437 (566)
..+++++++.+++|++++|+||||||||||+++|+|. ..|.+.....+-.. ....++++||... ++.+.+..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~~~~~~----~~~~lg~~~q~~~~l~dd~~~~ 228 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVNLPLDR----LNFELGVAIDQFLVVFEDVKGT 228 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCSSCTTT----HHHHHGGGTTCSCEEETTCCCS
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEeccchh----HHHHHHHhcchhHHHHHHHHHH
Confidence 3589999999999999999999999999999999985 36777652211111 1112556666543 22222221
Q ss_pred HHHHHHHHhcCCCc-hH--HHHHHHHHHH---------------HcCCC-CccccCcCcCChhHHHHHHHHHHHcCCCCE
Q psy7366 438 EHLEFYSRVRNVPS-VL--LNTIVNESLN---------------KFALG-HYSDREVRTLSGGNKRKLSTAIALLGNPPL 498 (566)
Q Consensus 438 e~l~~~~~~~~~~~-~~--~~~~~~~~l~---------------~~~l~-~~~~~~~~~LSgGqkqrv~la~al~~~p~l 498 (566)
.++ .+.... .. ....+...++ ..-+. ...+.....+++|+++|+..+.+++..|++
T Consensus 229 ~~~-----~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDL 303 (377)
T 1svm_A 229 GGE-----SRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYL 303 (377)
T ss_dssp TTT-----TTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHH
T ss_pred HHH-----HhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCe
Confidence 110 000000 00 0111223332 01111 234567788999999999988888888988
Q ss_pred EE-EeCCCC
Q psy7366 499 IF-LDEPTS 506 (566)
Q Consensus 499 ll-LDEPt~ 506 (566)
++ ||+|+.
T Consensus 304 liyLd~~~~ 312 (377)
T 1svm_A 304 KHCLERSEF 312 (377)
T ss_dssp HHHHHTCTH
T ss_pred EEEEeCCHH
Confidence 88 888876
No 262
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.53 E-value=1.9e-10 Score=112.91 Aligned_cols=130 Identities=12% Similarity=0.056 Sum_probs=85.1
Q ss_pred CCcchHHHHHh---ccccCCC-cc--CCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHH--------hcCCChhh
Q psy7366 1 MGLTTTPKRVV---TLLLTTQ-KV--PGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSR--------VRNVPSVL 66 (566)
Q Consensus 1 ~Gktt~~k~~~---~~~~~~~-~~--~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~--------~~~~~~~~ 66 (566)
+||||++|++. |+..+.. .+ .+.. ........+.+++|++.+++..++.+++..... ..+.+...
T Consensus 38 sGKSTl~k~La~~lg~~~~~~G~i~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~~~~il~g~~~~~ 116 (246)
T 2bbw_A 38 SGKGTVCQRIAQNFGLQHLSSGHFLRENIK-ASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQHWLLDGFPRTL 116 (246)
T ss_dssp SSHHHHHHHHHHHHCCCCEEHHHHHHHHHH-TTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTTSCEEEESCCCSH
T ss_pred CCHHHHHHHHHHHhCCeEecHHHHHHHHHh-cCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCH
Confidence 59999999999 7765432 00 0000 000112235667888888888899999976432 12332221
Q ss_pred HHHHHHHHHH--HcC------------CCcccccccccCChhHHHHHHHHHHH-hCCCCEEEee----CCCCCCCHHHHH
Q psy7366 67 LNTIVNESLN--KFA------------LGHYSDREVRTLSGGNKRKLSTAIAL-LGNPPLIFLD----EPTSGMDPGARR 127 (566)
Q Consensus 67 ~~~~~~~~l~--~~g------------l~~~~~~~~~~LSgG~kqrl~iA~al-~~~p~vLlLD----EPt~~LD~~~~~ 127 (566)
.+++.+.. .++ +....++.+.+||| |+ +|+ +.+|++++|| |||++||+.+++
T Consensus 117 --~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~ 187 (246)
T 2bbw_A 117 --GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPE 187 (246)
T ss_dssp --HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHH
T ss_pred --HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccccccccccccCCCCcHH
Confidence 22333322 222 22234788899999 55 677 8999999999 999999999999
Q ss_pred HHHHHHHHHHhCC
Q psy7366 128 FLWTCIERAVSEG 140 (566)
Q Consensus 128 ~l~~~l~~l~~~g 140 (566)
.+.+.|+.+.+++
T Consensus 188 ~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 188 AVAARLRQYKDVA 200 (246)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhH
Confidence 9999999886653
No 263
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.52 E-value=8e-08 Score=109.38 Aligned_cols=76 Identities=12% Similarity=0.110 Sum_probs=61.3
Q ss_pred ccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCcEEEE-EccCHHHHHhhCCEE
Q psy7366 472 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTS-GMDPGARRFLWTCIERAVSEGRCVIL-TSHNMEECEALCTKL 547 (566)
Q Consensus 472 ~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~-gLD~~~~~~l~~~l~~~~~~g~tvl~-vsHd~~~~~~~~drv 547 (566)
+..+.-+|.|+.+|..++..++.+++++|+|||.. +||......+++.+........+|++ +||+.+.+..+++..
T Consensus 185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~~ 262 (773)
T 2xau_A 185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDA 262 (773)
T ss_dssp TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTSC
T ss_pred CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcCC
Confidence 45677899999999999999999999999999996 99988776666666554444567777 499998888887643
No 264
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.50 E-value=2.8e-08 Score=101.31 Aligned_cols=81 Identities=15% Similarity=0.134 Sum_probs=63.1
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCch-----HHh-----cCceEEE-ecCCCC
Q psy7366 362 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM-----DLV-----RSYIGYC-PQFDAL 430 (566)
Q Consensus 362 l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-----~~~-----~~~i~~v-~q~~~l 430 (566)
+++++|++.+|++++|+|+||+||||++..|++.+.+..|+|.+.+.++.... ..+ +..+.++ +|....
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~ 174 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNA 174 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCC
Confidence 46889999999999999999999999999999999999999999988875432 222 5679999 666555
Q ss_pred CCCCCHHHHHHH
Q psy7366 431 NDRLTPREHLEF 442 (566)
Q Consensus 431 ~~~~tv~e~l~~ 442 (566)
.+..++.+++..
T Consensus 175 ~p~~~~~~~l~~ 186 (320)
T 1zu4_A 175 DPASVVFDAIKK 186 (320)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 544455555543
No 265
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.49 E-value=2e-08 Score=95.43 Aligned_cols=127 Identities=17% Similarity=0.230 Sum_probs=76.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCCchH
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVL 453 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~ 453 (566)
+++|+|+|||||||+.++|+++ |...+++..+. +. +. + +. .
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~~~------~~-~~---~-----~~-----------------~-- 44 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDADVVA------RE-VV---A-----KD-----------------S-- 44 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHHHH------HH-TT---C-----SS-----------------C--
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchHHHH------HH-Hc---c-----CC-----------------h--
Confidence 6899999999999999999983 54455442210 00 00 0 00 0
Q ss_pred HHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEE
Q psy7366 454 LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILT 533 (566)
Q Consensus 454 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~v 533 (566)
....++.+.+|...+ .|.|+.+|..++..+..+|+.+..+ .+.++|..+..+.+.+... .+.++|+.
T Consensus 45 --~~~~~i~~~~g~~~~-------~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~ 111 (206)
T 1jjv_A 45 --PLLSKIVEHFGAQIL-------TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFV 111 (206)
T ss_dssp --HHHHHHHHHHCTTCC-------------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEE
T ss_pred --HHHHHHHHHhCHHHh-------ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEE
Confidence 112344555554321 3678888888888888877644333 3456677666666555432 25688899
Q ss_pred ccCHHHH--HhhCCEEEEEEC
Q psy7366 534 SHNMEEC--EALCTKLTIMVN 552 (566)
Q Consensus 534 sHd~~~~--~~~~drv~~l~~ 552 (566)
+|.+.+. ...||++++++-
T Consensus 112 ~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 112 VPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp CTTTTTTTCGGGCSEEEEEEC
T ss_pred echhhhcCcHhhCCEEEEEEC
Confidence 9988775 678999998853
No 266
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.48 E-value=2e-07 Score=99.97 Aligned_cols=61 Identities=20% Similarity=0.186 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHHHcCCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hCCcEEEEEccCHHHH
Q psy7366 480 GGNKRKLSTAIALLGNPPLIFLDEP----------TSGMDPGARRFLWTCIERAV----SEGRCVILTSHNMEEC 540 (566)
Q Consensus 480 gGqkqrv~la~al~~~p~lllLDEP----------t~gLD~~~~~~l~~~l~~~~----~~g~tvl~vsHd~~~~ 540 (566)
+++++|..+++|....|.+|++||+ +.|.|....+.+.+++..+- ..+..||.+||..+.+
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 5678888899999999999999999 44777777777777777663 2477899999998654
No 267
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.47 E-value=5.5e-09 Score=114.04 Aligned_cols=43 Identities=23% Similarity=0.290 Sum_probs=38.5
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCcc-EEE-EcCccC
Q psy7366 368 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG-NAY-VMNHSI 410 (566)
Q Consensus 368 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G-~i~-~~g~~~ 410 (566)
.+.+|++++|+|+||||||||+++|+|.+.|++| +|. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 5789999999999999999999999999999887 785 888654
No 268
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.47 E-value=8.6e-08 Score=99.40 Aligned_cols=125 Identities=15% Similarity=0.140 Sum_probs=80.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcCCC
Q psy7366 371 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVP 450 (566)
Q Consensus 371 ~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~ 450 (566)
..-.++|+|+||+|||||++.++|... . ..+.+.... ...++.++++..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~-~-----~~~~~~~t~----~~~~~~~~~~~~--------------------- 214 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKP-E-----IASYPFTTR----GINVGQFEDGYF--------------------- 214 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCC-E-----EECCTTCSS----CEEEEEEEETTE---------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-c-----cCCCCCeee----ceeEEEEEecCc---------------------
Confidence 344789999999999999999998652 1 222221110 012333333210
Q ss_pred chHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCcE
Q psy7366 451 SVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLD-EPTSGMDPGARRFLWTCIERAVSEGRC 529 (566)
Q Consensus 451 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLD-EPt~gLD~~~~~~l~~~l~~~~~~g~t 529 (566)
.+..++.....+.++..+|+|++|.+. +.+...++-++++| +|.+++|......+++.+..... +..
T Consensus 215 ----------~~~l~Dt~G~~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~p 282 (357)
T 2e87_A 215 ----------RYQIIDTPGLLDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLP 282 (357)
T ss_dssp ----------EEEEEECTTTSSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSC
T ss_pred ----------eEEEEeCCCccccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCC
Confidence 001111122234567789999998776 55555677889999 99999999998888777766543 678
Q ss_pred EEEEc--cCHH
Q psy7366 530 VILTS--HNME 538 (566)
Q Consensus 530 vl~vs--Hd~~ 538 (566)
+|++. ||+.
T Consensus 283 iilV~NK~Dl~ 293 (357)
T 2e87_A 283 FLVVINKIDVA 293 (357)
T ss_dssp EEEEECCTTTC
T ss_pred EEEEEECcccC
Confidence 88888 8874
No 269
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.47 E-value=9.1e-07 Score=85.70 Aligned_cols=60 Identities=15% Similarity=0.201 Sum_probs=40.7
Q ss_pred CCCCEEEeeCCCCCCCHH-------H-----HHHHHHHHHHHHh-CCCEEEEecCChhHHHh------------------
Q psy7366 107 GNPPLIFLDEPTSGMDPG-------A-----RRFLWTCIERAVS-EGRCVILTSHNMEECEA------------------ 155 (566)
Q Consensus 107 ~~p~vLlLDEPt~~LD~~-------~-----~~~l~~~l~~l~~-~g~tviiisH~~~~~~~------------------ 155 (566)
.+|+++++|||++.+|+. + ...+...|+++++ .|.|||+++|...+...
T Consensus 118 ~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~ 197 (243)
T 1n0w_A 118 SRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIA 197 (243)
T ss_dssp SCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------C
T ss_pred CCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhh
Confidence 689999999999999985 3 3455555666544 49999999998766544
Q ss_pred -hcCEEEEEeCC
Q psy7366 156 -LCTKLTIMVNG 166 (566)
Q Consensus 156 -~~d~i~vl~~G 166 (566)
+||+|++|+.|
T Consensus 198 ~~~d~vi~l~~~ 209 (243)
T 1n0w_A 198 HASTTRLYLRKG 209 (243)
T ss_dssp CTTCEEEEEEEC
T ss_pred hcCcEEEEEEEc
Confidence 89999999875
No 270
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.46 E-value=2.2e-10 Score=119.42 Aligned_cols=79 Identities=6% Similarity=-0.123 Sum_probs=59.7
Q ss_pred ccccccCChhHHHHHHHHHHHh-CCCCEEEeeC---CC------CCCCHHHHHHHHHHHHHHHh-CCCEEEEecCChhHH
Q psy7366 85 DREVRTLSGGNKRKLSTAIALL-GNPPLIFLDE---PT------SGMDPGARRFLWTCIERAVS-EGRCVILTSHNMEEC 153 (566)
Q Consensus 85 ~~~~~~LSgG~kqrl~iA~al~-~~p~vLlLDE---Pt------~~LD~~~~~~l~~~l~~l~~-~g~tviiisH~~~~~ 153 (566)
++.+..+|+|++|+..+++++. .+|++++||| |+ .++|+..+..+.+.|+++.+ .|.+||+++|. .+.
T Consensus 253 ~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~ 331 (365)
T 1lw7_A 253 TTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYL 331 (365)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHH
Confidence 3445567778888888888774 6999999999 65 58999999999999988744 48999999976 567
Q ss_pred HhhcCEEEEEe
Q psy7366 154 EALCTKLTIMV 164 (566)
Q Consensus 154 ~~~~d~i~vl~ 164 (566)
+++|+++.+++
T Consensus 332 ~r~~~~i~~i~ 342 (365)
T 1lw7_A 332 DRYNQVKAVIE 342 (365)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77888887664
No 271
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.46 E-value=1.4e-10 Score=118.55 Aligned_cols=113 Identities=10% Similarity=-0.005 Sum_probs=68.7
Q ss_pred ceeEE---cCCCCCCCCCCHHHHHHHHH--Hh-cCC-ChhhHH--HHHHHHHHHcCCCcccccccccCChhHHHHHHHHH
Q psy7366 33 YIGYC---PQFDALNDRLTPREHLEFYS--RV-RNV-PSVLLN--TIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAI 103 (566)
Q Consensus 33 ~ig~v---~Q~~~l~~~~tv~e~l~~~~--~~-~~~-~~~~~~--~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~ 103 (566)
.++++ +|++.++++.++.|+..++. .. ..+ ...... .++..++..+++....++. .+||+||+||+..++
T Consensus 76 ~l~~l~~~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~-~~ls~g~~Q~~~ad~ 154 (318)
T 1nij_A 76 ALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM-NQFTIAQSQVGYADR 154 (318)
T ss_dssp HHHHHHHHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH-HHCHHHHHHHHTCSE
T ss_pred HHHHHHhHHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH-hhchHHHHHHHhCCE
Confidence 46666 67766656667666654321 00 000 000000 0111222333443333333 379999999998888
Q ss_pred HHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhcC
Q psy7366 104 ALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCT 158 (566)
Q Consensus 104 al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~d 158 (566)
+++.+|+++ ||| +.+.+.|+++. .+.+|+++||+..+++.+.|
T Consensus 155 ill~k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~~~~~l~~ 197 (318)
T 1nij_A 155 ILLTKTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDIDLGLLFN 197 (318)
T ss_dssp EEEECTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCCCGGGGSC
T ss_pred EEEECcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCCCHHHHhC
Confidence 888899887 888 78888888874 68999999998655554443
No 272
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.46 E-value=2e-08 Score=99.02 Aligned_cols=58 Identities=21% Similarity=0.127 Sum_probs=50.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHH---CCCCCCccEEE--------EcCccCCC--chHHhcCceEEEecC
Q psy7366 370 GRGECFGLLGLNGAGKTTTFKMLT---GAIKPTSGNAY--------VMNHSIRD--SMDLVRSYIGYCPQF 427 (566)
Q Consensus 370 ~~Ge~~~l~G~NGsGKSTLl~~i~---G~~~~~~G~i~--------~~g~~~~~--~~~~~~~~i~~v~q~ 427 (566)
.+|++++|+|||||||||++++|+ |+..+++|.++ .+|.++.. ....+++.+++++|.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 95 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVS 95 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEec
Confidence 789999999999999999999999 99999999999 88887743 344566789999875
No 273
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.42 E-value=1.4e-07 Score=87.58 Aligned_cols=119 Identities=10% Similarity=0.070 Sum_probs=69.5
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCc--cC-CCch----HHhcCceEEEecCCC--CCC-
Q psy7366 363 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH--SI-RDSM----DLVRSYIGYCPQFDA--LND- 432 (566)
Q Consensus 363 ~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~--~~-~~~~----~~~~~~i~~v~q~~~--l~~- 432 (566)
+++++++.+| +++|+||||||||||+++|.+++.+..|.....+. ++ .... ......|.+++|++. +.+
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~ 96 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPID 96 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccC
Confidence 7889999999 99999999999999999999998887665322221 11 1100 012346888898753 111
Q ss_pred --CCCHHHHHHHH----HHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHH
Q psy7366 433 --RLTPREHLEFY----SRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLS 487 (566)
Q Consensus 433 --~~tv~e~l~~~----~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~ 487 (566)
.+++...+.-. ....+.+ .....+.+++..+++.+. .+.-++.|+.+++.
T Consensus 97 ~~~~~i~r~~~~~~~~~~~i~g~~--~~~~~~~~~l~~~~l~~~---~~~~~~qg~~~~l~ 152 (182)
T 3kta_A 97 EDEVVIRRRVYPDGRSSYWLNGRR--ATRSEILDILTAAMISPD---GYNIVLQGDITKFI 152 (182)
T ss_dssp SSEEEEEEEECTTSCEEEEETTEE--ECHHHHHHHHHHTTCCTT---CTTEECTTCTTHHH
T ss_pred CcEEEEEEEEEeCCcEEEEECCeE--cCHHHHHHHHHHcCCCCC---CCEEEEcccHHHHH
Confidence 12222111000 0001111 123457788888888642 12346777776654
No 274
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.42 E-value=1.6e-08 Score=99.53 Aligned_cols=52 Identities=23% Similarity=0.355 Sum_probs=36.0
Q ss_pred eEEEeee-EEEeCCcCCCcceeeeeeEEEeC---CcEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366 342 VLVVKRL-FKIYANSKGTKPAVNQISFGVGR---GECFGLLGLNGAGKTTTFKMLTGAI 396 (566)
Q Consensus 342 ~l~~~~l-~~~y~~~~~~~~~l~~isl~i~~---Ge~~~l~G~NGsGKSTLl~~i~G~~ 396 (566)
+++++|+ ++.|+ +...+|+++||+|.+ |++++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~---~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD---EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec---CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 6899999 99993 256799999999999 9999999999999999999999854
No 275
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.42 E-value=7.2e-08 Score=91.27 Aligned_cols=35 Identities=23% Similarity=0.195 Sum_probs=30.0
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCcc
Q psy7366 367 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401 (566)
Q Consensus 367 l~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G 401 (566)
++|.+|++++|+|||||||||++++|++.+.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999977666
No 276
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.41 E-value=6.3e-08 Score=100.92 Aligned_cols=59 Identities=20% Similarity=0.216 Sum_probs=47.7
Q ss_pred HHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhcCEEEEEe
Q psy7366 98 KLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMV 164 (566)
Q Consensus 98 rl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~d~i~vl~ 164 (566)
+.+|+.+|..+|++|++|||+ |+++.. .+++. ...|.+|+.++|+.+ +.+.|||++.|.
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~~~---~~l~~-~~~g~~vi~t~H~~~-~~~~~~rl~~l~ 257 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLETVE---TALRA-AETGHLVFGTLHTNT-AIDTIHRIVDIF 257 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHHHH---HHHHH-HTTTCEEEECCCCCS-HHHHHHHHHHTS
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHHHH---HHHHH-HhcCCEEEEEECcch-HHHHHHHHHHhc
Confidence 469999999999999999999 776644 44444 356899999999965 778899998764
No 277
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.40 E-value=1.8e-09 Score=116.49 Aligned_cols=129 Identities=14% Similarity=0.139 Sum_probs=84.3
Q ss_pred cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCc-hHHhcCceEEEecCCC-CCCCCCH
Q psy7366 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS-MDLVRSYIGYCPQFDA-LNDRLTP 436 (566)
Q Consensus 359 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~v~q~~~-l~~~~tv 436 (566)
..+++++++.+++| +.|+||||+|||||+++|++... .+.+.+++.++... .....+++.+++|... ..+...+
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~ 128 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVF 128 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEE
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEE
Confidence 34678889999999 88999999999999999999875 78899999876431 1112233555666542 3344444
Q ss_pred HHHHHHHHHhcC----CCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCC
Q psy7366 437 REHLEFYSRVRN----VPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTS 506 (566)
Q Consensus 437 ~e~l~~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~ 506 (566)
.|++........ ....+..+.+..++ ..||||++|+..+++|...+|++ |||+..
T Consensus 129 IDEId~l~~~r~~~~~~~~~e~~~~l~~LL-------------~~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 129 IDEIDAVGRKRGSGVGGGNDEREQTLNQLL-------------VEMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp EECGGGTCCCSSSSTTTSSHHHHHHHHHHH-------------HHGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred EehHHHHHHhhccCcCCCcHHHHHHHHHHH-------------HHhcccccCccEEEEEecCChhh--cCcccc
Confidence 455532211111 01122223333433 34788888888888999999987 888865
No 278
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.39 E-value=1.2e-08 Score=102.55 Aligned_cols=114 Identities=16% Similarity=0.097 Sum_probs=75.8
Q ss_pred CCcchHHHHHhccccCCCccCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHH------hcCCChhhHHHHHHHH
Q psy7366 1 MGLTTTPKRVVTLLLTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSR------VRNVPSVLLNTIVNES 74 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~------~~~~~~~~~~~~~~~~ 74 (566)
+||||+.+.+.+.+-+. + .. ...+.+|+|++.+++. ++.+|+.+... .++.+.........+.
T Consensus 42 sGKSTla~~L~~~l~~~----g----~~--~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~~~ 110 (290)
T 1odf_A 42 SGKSFTSIQIYNHLMEK----Y----GG--EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQEV 110 (290)
T ss_dssp SSHHHHHHHHHHHHHHH----H----GG--GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGGSSSCSTTSBCHHHHHHH
T ss_pred CCHHHHHHHHHHHhhhc----C----CC--CceEEEeccccccCCh-HHHHHHhccccccchhhhccCcchhHHHHHHHH
Confidence 59999999999988431 0 01 1235556999887754 78888877521 1223333234456667
Q ss_pred HHHcCCC------c--ccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHH
Q psy7366 75 LNKFALG------H--YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGA 125 (566)
Q Consensus 75 l~~~gl~------~--~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~ 125 (566)
++.+.-. . ....+-..+||||+||+.+|++..-+|+|||+||||++||+..
T Consensus 111 l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 111 LNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp HHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCCC
T ss_pred HHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCccc
Confidence 7766443 1 1234557899999999999733333999999999999999864
No 279
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.38 E-value=2.3e-07 Score=86.06 Aligned_cols=46 Identities=20% Similarity=0.234 Sum_probs=41.6
Q ss_pred CCCCEEEeeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEecCChhH
Q psy7366 107 GNPPLIFLDEPTS-GMDPGARRFLWTCIERAVSEGRCVILTSHNMEE 152 (566)
Q Consensus 107 ~~p~vLlLDEPt~-~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~ 152 (566)
.+|++||||||++ ++|+..++.+.+++....++|+++|++||...+
T Consensus 99 ~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 99 LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 3999999999985 999999999999999887789999999998744
No 280
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.38 E-value=8.1e-08 Score=89.92 Aligned_cols=30 Identities=27% Similarity=0.339 Sum_probs=26.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHCCCCCCcc
Q psy7366 372 GECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401 (566)
Q Consensus 372 Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G 401 (566)
|++++|+||||||||||+++|+|++++..|
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~ 30 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccce
Confidence 678999999999999999999999984433
No 281
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.36 E-value=1.7e-08 Score=95.73 Aligned_cols=53 Identities=21% Similarity=0.283 Sum_probs=46.2
Q ss_pred CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEE--EEcCccCC
Q psy7366 358 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA--YVMNHSIR 411 (566)
Q Consensus 358 ~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i--~~~g~~~~ 411 (566)
...+.+..++..++|++++|+||||||||||.++|++.+. ..|.+ +++|.++.
T Consensus 11 ~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 11 SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 4556778888889999999999999999999999999987 67888 88887653
No 282
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.33 E-value=2.3e-07 Score=103.93 Aligned_cols=132 Identities=17% Similarity=0.115 Sum_probs=81.8
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC--CccEEEEcCccCCC-chHHhcCceEEEecCCCCCCCCCHHHHHHH
Q psy7366 366 SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP--TSGNAYVMNHSIRD-SMDLVRSYIGYCPQFDALNDRLTPREHLEF 442 (566)
Q Consensus 366 sl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~-~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~ 442 (566)
|+++.+|..++|+|+||+|||||++.|++...+ ..|+| .+|..+.. .....++.+++.+|...++.. ++..|+
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~nl-- 78 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRVFL-- 78 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEEEE--
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEEEE--
Confidence 456789999999999999999999999976654 67888 66666544 233445567777665443221 111111
Q ss_pred HHHhcCCCchHHHHHHHHHHHHcCCCCccccCcC-cCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy7366 443 YSRVRNVPSVLLNTIVNESLNKFALGHYSDREVR-TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIE 521 (566)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 521 (566)
.|.+.. .++ .......-..+.-++++| |+.|+++..+..+ +
T Consensus 79 ----------------------------iDTpG~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~~~----~ 120 (665)
T 2dy1_A 79 ----------------------------LDAPGYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTERAW----T 120 (665)
T ss_dssp ----------------------------EECCCSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHHHH----H
T ss_pred ----------------------------EeCCCccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHHHH----H
Confidence 111100 000 112222235677899999 9999998877333 3
Q ss_pred HHHhCCcEEEEEccCHHH
Q psy7366 522 RAVSEGRCVILTSHNMEE 539 (566)
Q Consensus 522 ~~~~~g~tvl~vsHd~~~ 539 (566)
.+.+.+..+|++.|.++.
T Consensus 121 ~~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 121 VAERLGLPRMVVVTKLDK 138 (665)
T ss_dssp HHHHTTCCEEEEEECGGG
T ss_pred HHHHccCCEEEEecCCch
Confidence 333458889999998875
No 283
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.32 E-value=1.2e-09 Score=102.38 Aligned_cols=143 Identities=10% Similarity=-0.035 Sum_probs=82.3
Q ss_pred CCcchHHHHHhccccCCC-ccCCCCCcc-cccccceeEEcCCCCCCCCCCHHHHHHHHHHhc---CCChhhHHHHHHHHH
Q psy7366 1 MGLTTTPKRVVTLLLTTQ-KVPGSNPTI-DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVR---NVPSVLLNTIVNESL 75 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~-~~~~~~~~~-~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l 75 (566)
.||||++|.+.+..-.|. .+.+..... ......++|++|++. +..+|.+++.+..... +.. .. ++.++
T Consensus 20 sGKSTl~~~La~~~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~~~~~~~-~~----~~~~~ 92 (191)
T 1zp6_A 20 SGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGRYAKEGYF-VI----LDGVV 92 (191)
T ss_dssp SCHHHHHHHHHTCSSSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHHHHHTSCE-EE----ECSCC
T ss_pred CCHHHHHHHHHhccCCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHHHhccCCe-EE----EeccC
Confidence 599999999999732222 122211000 011234678888654 3568888887653321 100 00 00111
Q ss_pred HHcCCCccc--ccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHH
Q psy7366 76 NKFALGHYS--DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC 153 (566)
Q Consensus 76 ~~~gl~~~~--~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~ 153 (566)
..+++.... +.++..+|+|++|+++++|++.++|+++ +|+..++.+++.++.+...+..+|.++|. .+
T Consensus 93 ~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~~~~~~i~t~~~--~~ 162 (191)
T 1zp6_A 93 RPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLGAFEHHVLPVSGK--DT 162 (191)
T ss_dssp CTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGGGGGGEEECTTC--CT
T ss_pred cHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccCcccccEEECCCC--CH
Confidence 112222111 4456789999999999999999999887 68998888888887654333334444331 33
Q ss_pred HhhcCEE
Q psy7366 154 EALCTKL 160 (566)
Q Consensus 154 ~~~~d~i 160 (566)
++++++|
T Consensus 163 ~~~~~~i 169 (191)
T 1zp6_A 163 DQALQSA 169 (191)
T ss_dssp TTTTTTT
T ss_pred HHHHHHH
Confidence 4455555
No 284
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.28 E-value=5.9e-07 Score=81.06 Aligned_cols=48 Identities=13% Similarity=0.217 Sum_probs=39.5
Q ss_pred HhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCE-EEEecCC-hhHH
Q psy7366 105 LLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC-VILTSHN-MEEC 153 (566)
Q Consensus 105 l~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~t-viiisH~-~~~~ 153 (566)
++.+|++||||||++ +++..++.|++++..+.+.|++ +|++||. ++++
T Consensus 80 ~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~p~~l 129 (149)
T 2kjq_A 80 AAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQL 129 (149)
T ss_dssp GGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSCTTTS
T ss_pred HHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCCHHHc
Confidence 356899999999998 7776799999999998888888 8888885 3434
No 285
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.27 E-value=6.5e-07 Score=92.12 Aligned_cols=125 Identities=11% Similarity=0.083 Sum_probs=64.9
Q ss_pred CCcchHHHHHhc-cccCCCc---cCCCCCc-ccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCC-ChhhHHHHHHHH
Q psy7366 1 MGLTTTPKRVVT-LLLTTQK---VPGSNPT-IDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNV-PSVLLNTIVNES 74 (566)
Q Consensus 1 ~Gktt~~k~~~~-~~~~~~~---~~~~~~~-~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~ 74 (566)
+||||+++.+.+ ++-++.. +.+.... .......+++++|.+.+....+- .+. ....+.+.++++
T Consensus 47 ~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~i~~~ 116 (354)
T 1sxj_E 47 TGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD----------MGNNDRIVIQELLKEV 116 (354)
T ss_dssp SSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC--------------CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhh----------cCCcchHHHHHHHHHH
Confidence 599999999999 4433321 1111000 01123458888887644211110 011 111123333333
Q ss_pred HHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHH
Q psy7366 75 LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC 153 (566)
Q Consensus 75 l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~ 153 (566)
....++... . +||| +..+|+|+|||||++ ||+.+...|.+.|.+. ..+.++|++||+.+.+
T Consensus 117 ~~~~~~~~~----~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~-~~~~~~Il~t~~~~~l 177 (354)
T 1sxj_E 117 AQMEQVDFQ----D-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKY-SKNIRLIMVCDSMSPI 177 (354)
T ss_dssp TTTTC----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHS-TTTEEEEEEESCSCSS
T ss_pred HHhcccccc----c-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhh-cCCCEEEEEeCCHHHH
Confidence 333333221 1 5676 788999999999999 9999999999999875 4478999999997643
No 286
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.26 E-value=2.8e-07 Score=94.99 Aligned_cols=98 Identities=12% Similarity=0.051 Sum_probs=72.6
Q ss_pred CCcchHHHHHhcccc-CCC-ccC---CCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy7366 1 MGLTTTPKRVVTLLL-TTQ-KVP---GSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 75 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~-~~~-~~~---~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l 75 (566)
+||||++|++++... +.. .+. +.+.. ......+++++|++.+++.++|.++. ..+++..++...+.+++
T Consensus 226 ~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e~~-----l~~l~~~e~~~~~~e~l 299 (358)
T 2rcn_A 226 VGKSSLLNALLGLQNEILTNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVREFG-----LWHLEPEQITQGFVEFH 299 (358)
T ss_dssp SSHHHHHHHHHCCSSCCCCC--------------CCCEEEECTTSCEEEECHHHHTCC-----CCCCCHHHHHHTSGGGG
T ss_pred ccHHHHHHHHhccccccccCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHHhh-----hcCCCHHHHHHHHHHHH
Confidence 599999999999886 433 121 21111 12345699999999888888888841 23455666777888999
Q ss_pred HHcCCCcccccccccCChhHHHHHHHHHHH
Q psy7366 76 NKFALGHYSDREVRTLSGGNKRKLSTAIAL 105 (566)
Q Consensus 76 ~~~gl~~~~~~~~~~LSgG~kqrl~iA~al 105 (566)
+.+|+....+..+.+|| ||+||++||+++
T Consensus 300 ~~~gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 300 DYLGHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp GGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred HHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 99999998999999999 999999999874
No 287
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.26 E-value=1.4e-06 Score=90.46 Aligned_cols=49 Identities=14% Similarity=0.067 Sum_probs=38.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCcEEEEEccCHHHHHhh
Q psy7366 494 GNPPLIFLDEPTSGMDPGARRFLWTCIERAVS---EGRCVILTSHNMEECEAL 543 (566)
Q Consensus 494 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~---~g~tvl~vsHd~~~~~~~ 543 (566)
.+|.+|++||+... |......+.+.+.++.. .+.++|++||+.+....+
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l 175 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNL 175 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTS
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHh
Confidence 56889999999876 88888888888876655 578999999998655443
No 288
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.23 E-value=1e-06 Score=90.24 Aligned_cols=128 Identities=11% Similarity=0.117 Sum_probs=82.7
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHH
Q psy7366 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHL 440 (566)
Q Consensus 361 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l 440 (566)
-|+.+.--+.+|+++.|.|++|+|||||..-++...... | ..+.|+.- .++..+..
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~-------g-----------~~Vl~fSl------Ems~~ql~ 90 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALND-------D-----------RGVAVFSL------EMSAEQLA 90 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHT-------T-----------CEEEEEES------SSCHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc-------C-----------CeEEEEeC------CCCHHHHH
Confidence 466665578999999999999999999998887543221 1 13555542 34554432
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHH
Q psy7366 441 EFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCI 520 (566)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l 520 (566)
.-. ......+.+... .-..||.++.+|+..|...+.+++++|.|+|...+| .|...+
T Consensus 91 ~Rl---------------ls~~~~v~~~~l---~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~-----~i~~~i 147 (338)
T 4a1f_A 91 LRA---------------LSDLTSINMHDL---ESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE-----QIRLQL 147 (338)
T ss_dssp HHH---------------HHHHHCCCHHHH---HHTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH-----HHHHHH
T ss_pred HHH---------------HHHhhCCCHHHH---hcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH-----HHHHHH
Confidence 211 111111111111 114799999999999999999999999999965433 555666
Q ss_pred HHHHh-C-CcEEEEEcc
Q psy7366 521 ERAVS-E-GRCVILTSH 535 (566)
Q Consensus 521 ~~~~~-~-g~tvl~vsH 535 (566)
+++++ . |..+|+|-|
T Consensus 148 r~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 148 RKLKSQHKELGIAFIDY 164 (338)
T ss_dssp HHHHHHCTTEEEEEEEE
T ss_pred HHHHHhcCCCCEEEEec
Confidence 66654 3 678887743
No 289
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.22 E-value=2.6e-09 Score=111.71 Aligned_cols=116 Identities=16% Similarity=0.123 Sum_probs=83.7
Q ss_pred eEEcCCCCCCCCCCHHHHH--HHHHHhcCCChhhHHHHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCC--C
Q psy7366 35 GYCPQFDALNDRLTPREHL--EFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNP--P 110 (566)
Q Consensus 35 g~v~Q~~~l~~~~tv~e~l--~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p--~ 110 (566)
.++.+.|.++..++..|++ .|....+..+. ++..+.. ..+..+..+|++. +| +
T Consensus 87 i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~---------il~Vvd~--~~d~~i~~v~~~~------------dP~~d 143 (392)
T 1ni3_A 87 LTVFDIAGLTKGASTGVGLGNAFLSHVRAVDA---------IYQVVRA--FDDAEIIHVEGDV------------DPIRD 143 (392)
T ss_dssp EEEECTGGGCCCCCSSSSSCHHHHHHHTTCSE---------EEEEEEC--CCTTCSSCCSSSS------------CHHHH
T ss_pred eEEEeccccccCCcHHHHHHHHHHHHHHHHHH---------HHHHHhc--cccceeeeecccc------------Ccchh
Confidence 4778888888887876655 44433332211 1111111 1134455567653 99 9
Q ss_pred EEEeeCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEecCChhHHHhhcCEEE-EEeCC-EEEEecChh
Q psy7366 111 LIFLDEPTSGMDPGARRFLWTCIERA-VSEGRCVILTSHNMEECEALCTKLT-IMVNG-QFTCLGSAT 175 (566)
Q Consensus 111 vLlLDEPt~~LD~~~~~~l~~~l~~l-~~~g~tviiisH~~~~~~~~~d~i~-vl~~G-~i~~~g~~~ 175 (566)
++++|||++++|+..++..++.++.+ .+.|.||+ +|.+.++.++||+|. +|++| +++..|+.+
T Consensus 144 i~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 144 LSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred hhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCceeecCCCC
Confidence 99999999999999999999999987 66677754 999999999999999 99999 887666543
No 290
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.21 E-value=2.8e-08 Score=104.77 Aligned_cols=72 Identities=24% Similarity=0.183 Sum_probs=55.9
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEe-cCChhHHHhhcCEE
Q psy7366 85 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILT-SHNMEECEALCTKL 160 (566)
Q Consensus 85 ~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviii-sH~~~~~~~~~d~i 160 (566)
++++.+||+|++|++++|++|+..|.+|++ |.+|+.....+..+.+.+.+.|.+++++ +|.-+.+.++++.+
T Consensus 247 ~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 247 DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 578889999999999999999999999999 9999987754444444455567776654 46666677666665
No 291
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.18 E-value=9.2e-08 Score=88.26 Aligned_cols=39 Identities=15% Similarity=0.330 Sum_probs=34.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC
Q psy7366 370 GRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 412 (566)
Q Consensus 370 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~ 412 (566)
.+|++++|+|+|||||||+.++|++.+ |.+.+++.++..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~ 44 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP 44 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccc
Confidence 468999999999999999999999865 888999877643
No 292
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.11 E-value=7.6e-07 Score=82.76 Aligned_cols=37 Identities=16% Similarity=0.071 Sum_probs=31.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCCCCC-CccEEEEc
Q psy7366 370 GRGECFGLLGLNGAGKTTTFKMLTGAIKP-TSGNAYVM 406 (566)
Q Consensus 370 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~-~~G~i~~~ 406 (566)
.+|++++|+||||||||||+++|++.+++ ..|.|...
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~t 40 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHT 40 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeecc
Confidence 36899999999999999999999998874 45666544
No 293
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.09 E-value=1.1e-06 Score=85.24 Aligned_cols=41 Identities=15% Similarity=0.114 Sum_probs=36.3
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccC
Q psy7366 366 SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 410 (566)
Q Consensus 366 sl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~ 410 (566)
+.+.++|++++|.|+||||||||+++|+|. .|+|.+.+++.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~ 54 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV 54 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence 345589999999999999999999999998 78899998764
No 294
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.08 E-value=7.9e-06 Score=84.57 Aligned_cols=173 Identities=12% Similarity=0.071 Sum_probs=85.5
Q ss_pred cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHC--CCCCCccEEEEcCccCCC-chHHhcCceEEEecCCC-CCCCC
Q psy7366 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG--AIKPTSGNAYVMNHSIRD-SMDLVRSYIGYCPQFDA-LNDRL 434 (566)
Q Consensus 359 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G--~~~~~~G~i~~~g~~~~~-~~~~~~~~i~~v~q~~~-l~~~~ 434 (566)
..+|++++++++ .++|+|++|||||||++.|+| ++++.+|.++..+..+.. .........+.+++.+. .+.+.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDF 100 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCH
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCH
Confidence 358999999998 899999999999999999999 667777766433322110 00000122344443321 11111
Q ss_pred -CHHHHHHHHH-Hhc----CCCchHHHHHH----HHHHHHcCCCCccc-cCcCcCChhHHHHHHHHHHHcCCCCEEEEeC
Q psy7366 435 -TPREHLEFYS-RVR----NVPSVLLNTIV----NESLNKFALGHYSD-REVRTLSGGNKRKLSTAIALLGNPPLIFLDE 503 (566)
Q Consensus 435 -tv~e~l~~~~-~~~----~~~~~~~~~~~----~~~l~~~~l~~~~~-~~~~~LSgGqkqrv~la~al~~~p~lllLDE 503 (566)
.+.+.+.... ... ++......-.+ ..-+..+++..... ....+.++.++++..+++..+.+|+++||.-
T Consensus 101 ~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv 180 (360)
T 3t34_A 101 AAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAI 180 (360)
T ss_dssp HHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEe
Confidence 1111111000 000 00000000000 00000111111111 1123467788999999999999999888874
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEcc
Q psy7366 504 PTSGMDPGARRFLWTCIERAVSEG-RCVILTSH 535 (566)
Q Consensus 504 Pt~gLD~~~~~~l~~~l~~~~~~g-~tvl~vsH 535 (566)
..+..|... ....++++.+...| .+|+++|.
T Consensus 181 ~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 181 SPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp EETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred ecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 444455443 34456666665555 57777765
No 295
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.08 E-value=7.3e-06 Score=86.54 Aligned_cols=39 Identities=26% Similarity=0.172 Sum_probs=32.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCcc
Q psy7366 371 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 409 (566)
Q Consensus 371 ~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~ 409 (566)
++.+++++|||||||||++..|++.+.+..++|.+-+.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 678999999999999999999999988776666554433
No 296
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.07 E-value=2.7e-06 Score=80.36 Aligned_cols=75 Identities=12% Similarity=-0.043 Sum_probs=61.7
Q ss_pred HHHHHHHHHHcCCCcc-cccccccCChhHHHH-HHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q psy7366 68 NTIVNESLNKFALGHY-SDREVRTLSGGNKRK-LSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC 142 (566)
Q Consensus 68 ~~~~~~~l~~~gl~~~-~~~~~~~LSgG~kqr-l~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~t 142 (566)
..++.+++...++... ...++..+|+||+|+ +..+++++.+|.++++|||||++|+.+++++++.|.++..+|.+
T Consensus 126 ~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 126 DQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp HHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 3456667777888753 467789999999999 89999999999999999999999999999999999998666644
No 297
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.04 E-value=1.8e-05 Score=81.44 Aligned_cols=152 Identities=15% Similarity=0.153 Sum_probs=83.8
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHCC--CCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHH
Q psy7366 368 GVGRGECFGLLGLNGAGKTTTFKMLTGA--IKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSR 445 (566)
Q Consensus 368 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G~--~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~ 445 (566)
-+++|+++.|.||+|+|||||+..++.. .++..| |. ..++.|+.-+..+ +......+...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~g-----g~---------~~~vlyi~~E~~~----~~~~l~~~~~~ 179 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGG-----YP---------GGKIIFIDTENTF----RPDRLRDIADR 179 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTT-----BC---------CCEEEEEESSSCC----CHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccC-----CC---------CCeEEEEECCCCC----CHHHHHHHHHH
Confidence 4789999999999999999999988864 332211 00 0135555544321 22221111111
Q ss_pred hcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHH-HHHHHHHHHc----CCCCEEEEeCCCCCCCHH--------H
Q psy7366 446 VRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNK-RKLSTAIALL----GNPPLIFLDEPTSGMDPG--------A 512 (566)
Q Consensus 446 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqk-qrv~la~al~----~~p~lllLDEPt~gLD~~--------~ 512 (566)
.+... .++++.+.+ ....++.+. +.+..++.++ .+++++++|+.++-.... .
T Consensus 180 -~g~~~-------~~~l~~l~~-------~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~ 244 (343)
T 1v5w_A 180 -FNVDH-------DAVLDNVLY-------ARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAE 244 (343)
T ss_dssp -TTCCH-------HHHHHTEEE-------EECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHH
T ss_pred -cCCCH-------HHHHhceeE-------eecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHH
Confidence 12221 122332211 111233332 3344455554 679999999999876432 1
Q ss_pred ----HHHHHHHHHHHHhC-CcEEEEEccCHHH-------------------HHhhCCEEEEEEC
Q psy7366 513 ----RRFLWTCIERAVSE-GRCVILTSHNMEE-------------------CEALCTKLTIMVN 552 (566)
Q Consensus 513 ----~~~l~~~l~~~~~~-g~tvl~vsHd~~~-------------------~~~~~drv~~l~~ 552 (566)
...+...|..++++ +.+||+++|.... +...+|-++.|+.
T Consensus 245 r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~~~~~~~~~~g~~~~~~gg~~i~~~ad~~l~l~r 308 (343)
T 1v5w_A 245 RQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGGHILAHASTTRISLRK 308 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCEEEEEECC-------------------CCTTTTSSSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCEEEEEeeceecCCCccccCCCCCcCCchHHHHHhCCEEEEEEE
Confidence 23444555555554 8999999996542 3445788888874
No 298
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.03 E-value=9.6e-07 Score=83.64 Aligned_cols=42 Identities=21% Similarity=0.270 Sum_probs=37.6
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccC
Q psy7366 369 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 410 (566)
Q Consensus 369 i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~ 410 (566)
..+|++++|+|+||||||||+++|++.+++..|.|.+.+.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 578999999999999999999999999988889998876654
No 299
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.02 E-value=2.2e-06 Score=80.83 Aligned_cols=39 Identities=26% Similarity=0.216 Sum_probs=24.8
Q ss_pred CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366 358 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI 396 (566)
Q Consensus 358 ~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~ 396 (566)
...+++|+||++.+|++++|+|++||||||+.+.|++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 346899999999999999999999999999999999765
No 300
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.01 E-value=1.1e-06 Score=89.81 Aligned_cols=145 Identities=8% Similarity=-0.046 Sum_probs=90.8
Q ss_pred CCcchHHHHHhccccCCCc---cCCCCCcc----c-----ccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHH
Q psy7366 1 MGLTTTPKRVVTLLLTTQK---VPGSNPTI----D-----KNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLN 68 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~~---~~~~~~~~----~-----~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~ 68 (566)
.|||||++.+.+++.+... +.+.+... . ....+|.+++|...+++.++|++|+.++... +.+.
T Consensus 140 aGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~~~~-~~d~---- 214 (328)
T 3e70_C 140 SGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAKAR-GIDV---- 214 (328)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHHHHH-TCSE----
T ss_pred CCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHHHhc-cchh----
Confidence 5999999999999875441 11111110 0 1223466999999998889999999875431 1111
Q ss_pred HHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEec
Q psy7366 69 TIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV-SEGRCVILTS 147 (566)
Q Consensus 69 ~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~-~~g~tviiis 147 (566)
-+++..|........+.+||+ +++++..++.+++||.+|. ..+.+.++.+. ..|.|+|++|
T Consensus 215 ----vliDtaG~~~~~~~l~~eL~~-------i~ral~~de~llvLDa~t~-------~~~~~~~~~~~~~~~it~iilT 276 (328)
T 3e70_C 215 ----VLIDTAGRSETNRNLMDEMKK-------IARVTKPNLVIFVGDALAG-------NAIVEQARQFNEAVKIDGIILT 276 (328)
T ss_dssp ----EEEEECCSCCTTTCHHHHHHH-------HHHHHCCSEEEEEEEGGGT-------THHHHHHHHHHHHSCCCEEEEE
T ss_pred ----hHHhhccchhHHHHHHHHHHH-------HHHHhcCCCCEEEEecHHH-------HHHHHHHHHHHHhcCCCEEEEe
Confidence 013334554444455555553 8899998888888885554 34555556665 3589999999
Q ss_pred CCh---------hHHHhhcCEEEEEeCCEE
Q psy7366 148 HNM---------EECEALCTKLTIMVNGQF 168 (566)
Q Consensus 148 H~~---------~~~~~~~d~i~vl~~G~i 168 (566)
|.- +.+....-.|.++..|+-
T Consensus 277 KlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~ 306 (328)
T 3e70_C 277 KLDADARGGAALSISYVIDAPILFVGVGQG 306 (328)
T ss_dssp CGGGCSCCHHHHHHHHHHTCCEEEEECSSS
T ss_pred CcCCccchhHHHHHHHHHCCCEEEEeCCCC
Confidence 952 233344456777766663
No 301
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.96 E-value=2.7e-05 Score=79.40 Aligned_cols=152 Identities=15% Similarity=0.136 Sum_probs=80.1
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHCCC-CCC-ccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHH
Q psy7366 368 GVGRGECFGLLGLNGAGKTTTFKMLTGAI-KPT-SGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSR 445 (566)
Q Consensus 368 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~-~~~-~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~ 445 (566)
-+++|+++.|.||+|+|||||...++... .+. .| |. ..++.|+.-+..+ +......+...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~g-----g~---------~~~vlyi~~e~~~----~~~~l~~~~~~ 164 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG-----GL---------SGKAVYIDTEGTF----RWERIENMAKA 164 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT-----CC---------SCEEEEEESSSCC----CHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccC-----CC---------CCeEEEEECCCCC----CHHHHHHHHHH
Confidence 47999999999999999999998887542 331 11 00 0134555443221 12211111111
Q ss_pred hcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhH-HHHHHHHHHHc---CCCCEEEEeCCCCCCCH--------HH-
Q psy7366 446 VRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGN-KRKLSTAIALL---GNPPLIFLDEPTSGMDP--------GA- 512 (566)
Q Consensus 446 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq-kqrv~la~al~---~~p~lllLDEPt~gLD~--------~~- 512 (566)
.+... .++++.+-+ ....+..+ .+.+..++.++ .+|+++++|+.++-... ..
T Consensus 165 -~g~~~-------~~~~~~l~~-------~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r 229 (324)
T 2z43_A 165 -LGLDI-------DNVMNNIYY-------IRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVR 229 (324)
T ss_dssp -TTCCH-------HHHHHTEEE-------EECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHH
T ss_pred -hCCCH-------HHHhccEEE-------EeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHH
Confidence 12221 112221111 11123322 24566666666 67999999999876532 12
Q ss_pred ---HHHHHHHHHHHHhC-CcEEEEEccCHHH----------------HHhhCCEEEEEEC
Q psy7366 513 ---RRFLWTCIERAVSE-GRCVILTSHNMEE----------------CEALCTKLTIMVN 552 (566)
Q Consensus 513 ---~~~l~~~l~~~~~~-g~tvl~vsHd~~~----------------~~~~~drv~~l~~ 552 (566)
...+...|..++++ +.+||+++|-... +...+|.++.|+.
T Consensus 230 ~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~~~~~~~~~~~~~~gg~~l~~~~d~~l~l~r 289 (324)
T 2z43_A 230 QQKLNKHLHQLTRLAEVYDIAVIITNQVMARPDMFYGDPTVAVGGHTLYHVPGIRIQLKK 289 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEEEEC------------------------CEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCEEEEEcceeecCCCcCCCCCCCCchHHHHhhCcEEEEEEE
Confidence 23444455555544 8999999886432 3445787888863
No 302
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.95 E-value=3e-05 Score=81.24 Aligned_cols=61 Identities=15% Similarity=0.140 Sum_probs=46.7
Q ss_pred CCCCEEEeeCCCCCCCHHHH------------HHHHHHHHHHHhC-CCEEEEecCCh-------------------hHHH
Q psy7366 107 GNPPLIFLDEPTSGMDPGAR------------RFLWTCIERAVSE-GRCVILTSHNM-------------------EECE 154 (566)
Q Consensus 107 ~~p~vLlLDEPt~~LD~~~~------------~~l~~~l~~l~~~-g~tviiisH~~-------------------~~~~ 154 (566)
.+|+++|+|||++.+|+... .++.+.|++++++ |.|||+++|.. ..+.
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~ 351 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA 351 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence 68999999999999997432 5677778887654 99999999983 2356
Q ss_pred hhcCEEEEEeCCE
Q psy7366 155 ALCTKLTIMVNGQ 167 (566)
Q Consensus 155 ~~~d~i~vl~~G~ 167 (566)
..||.+++|++++
T Consensus 352 ~~ad~vl~L~~~~ 364 (400)
T 3lda_A 352 YSSTTRLGFKKGK 364 (400)
T ss_dssp HHCSEEEEEEECS
T ss_pred HhcceEEEEEecC
Confidence 7799999998764
No 303
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.95 E-value=9.3e-07 Score=89.41 Aligned_cols=101 Identities=9% Similarity=0.040 Sum_probs=69.4
Q ss_pred CCcchHHHHHhccccCCC-ccC-----CCCCccc--c-cccceeEEcCCCCCC-----CCCCHHHHH--HHH------HH
Q psy7366 1 MGLTTTPKRVVTLLLTTQ-KVP-----GSNPTID--K-NLSYIGYCPQFDALN-----DRLTPREHL--EFY------SR 58 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~-~~~-----~~~~~~~--~-~~~~ig~v~Q~~~l~-----~~~tv~e~l--~~~------~~ 58 (566)
+||||++|+++ ...+.. .+. |...... . ....+||++|.|.+. +.+|+ |++ .|. +.
T Consensus 176 ~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e~l~~~f~~~~~~~c~ 253 (302)
T 2yv5_A 176 VGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-REVRNYFREFLRYQCK 253 (302)
T ss_dssp SSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-GGGGGGCGGGHHHHHH
T ss_pred CCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-HHHHHHHHHHHHccCC
Confidence 59999999999 765443 222 1111111 1 112689999999764 67899 887 443 12
Q ss_pred hcC-CChhhHHHHHHHHHHHcCCCc-ccccccccCChhHHHHHHHHH
Q psy7366 59 VRN-VPSVLLNTIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTAI 103 (566)
Q Consensus 59 ~~~-~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG~kqrl~iA~ 103 (566)
+.+ .+..+..+++.++++.++|.. ..++++..|||.++++++||+
T Consensus 254 ~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 254 YPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp STTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred CCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 232 234455678999999999986 778999999999999999986
No 304
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.93 E-value=6.6e-07 Score=90.97 Aligned_cols=47 Identities=23% Similarity=0.368 Sum_probs=35.7
Q ss_pred cceeeeeeEEEeCCc------EEEEEcCCCCcHHHHHHHHHCCCC--CCccEEEE
Q psy7366 359 KPAVNQISFGVGRGE------CFGLLGLNGAGKTTTFKMLTGAIK--PTSGNAYV 405 (566)
Q Consensus 359 ~~~l~~isl~i~~Ge------~~~l~G~NGsGKSTLl~~i~G~~~--~~~G~i~~ 405 (566)
...|.+++..+.++. ++||+||||||||||+++|.+++. |+.|.|.+
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~ 127 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEV 127 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEE
Confidence 345566666666555 999999999999999999999987 45555433
No 305
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.93 E-value=3.3e-06 Score=79.63 Aligned_cols=32 Identities=16% Similarity=0.225 Sum_probs=27.0
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCC
Q psy7366 366 SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 397 (566)
Q Consensus 366 sl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~ 397 (566)
|+...+|++++|+||||||||||++.|++.++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 44456899999999999999999999999876
No 306
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.92 E-value=1.1e-05 Score=81.06 Aligned_cols=127 Identities=14% Similarity=0.212 Sum_probs=83.3
Q ss_pred CCcchHHHHHhccccCCCccCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCC
Q psy7366 1 MGLTTTPKRVVTLLLTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFAL 80 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl 80 (566)
.||||+++.+.+.+.+.+ ..+|.++.+++. ..+..|++..+++. +|+
T Consensus 116 sGKTTl~~~LA~~l~~~~------------G~~V~lv~~D~~---r~~a~eqL~~~~~~------------------~gl 162 (296)
T 2px0_A 116 AGKTTTLAKLAAISMLEK------------HKKIAFITTDTY---RIAAVEQLKTYAEL------------------LQA 162 (296)
T ss_dssp SSHHHHHHHHHHHHHHTT------------CCCEEEEECCCS---STTHHHHHHHHHTT------------------TTC
T ss_pred CCHHHHHHHHHHHHHHhc------------CCEEEEEecCcc---cchHHHHHHHHHHh------------------cCC
Confidence 599999999998885321 124888888863 44666666554432 233
Q ss_pred CcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHH---hCCCEEEE-ecCChhHHHhh
Q psy7366 81 GHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV---SEGRCVIL-TSHNMEECEAL 156 (566)
Q Consensus 81 ~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~---~~g~tvii-isH~~~~~~~~ 156 (566)
+.... .+ +..-+.+|++ +.+|+++|+| |+|+|+.....+.++.+-+. ..+..+++ ++|...++.++
T Consensus 163 ~~~~~-----~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~ 232 (296)
T 2px0_A 163 PLEVC-----YT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHI 232 (296)
T ss_dssp CCCBC-----SS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHH
T ss_pred CeEec-----CC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHH
Confidence 22111 12 2233555554 4899999999 99999988776666554332 12334444 59999999999
Q ss_pred cCEEEEEeCCEEEE
Q psy7366 157 CTKLTIMVNGQFTC 170 (566)
Q Consensus 157 ~d~i~vl~~G~i~~ 170 (566)
|+++..+..+.++.
T Consensus 233 ~~~~~~l~~~giVl 246 (296)
T 2px0_A 233 VKRFSSVPVNQYIF 246 (296)
T ss_dssp TTTTSSSCCCEEEE
T ss_pred HHHHhcCCCCEEEE
Confidence 99987777777775
No 307
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.91 E-value=4.6e-06 Score=79.34 Aligned_cols=35 Identities=23% Similarity=0.151 Sum_probs=30.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCCCCC-CccEEE
Q psy7366 370 GRGECFGLLGLNGAGKTTTFKMLTGAIKP-TSGNAY 404 (566)
Q Consensus 370 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~-~~G~i~ 404 (566)
++|++++|+||||||||||+++|++.+++ ..+.+.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~ 41 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSIS 41 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEe
Confidence 58999999999999999999999999887 344443
No 308
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.91 E-value=7.2e-07 Score=90.18 Aligned_cols=63 Identities=10% Similarity=0.100 Sum_probs=46.0
Q ss_pred CChhHHHHHHHHHHHc--CCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHhC-Cc--EEEEEccCHHHHHhhCCEE
Q psy7366 478 LSGGNKRKLSTAIALL--GNPPLIFLDEPTSGMDPGA-RRFLWTCIERAVSE-GR--CVILTSHNMEECEALCTKL 547 (566)
Q Consensus 478 LSgGqkqrv~la~al~--~~p~lllLDEPt~gLD~~~-~~~l~~~l~~~~~~-g~--tvl~vsHd~~~~~~~~drv 547 (566)
+|.|++ .+++.+. ..|.++++ |.+|... +..+.+.+.++.+. |. .+.+++|+-+.+..++|.+
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i 169 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIV 169 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHH
Confidence 888886 4566666 78889988 8999876 67788888888764 53 5667777776666666554
No 309
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.91 E-value=5.5e-05 Score=80.76 Aligned_cols=99 Identities=8% Similarity=-0.004 Sum_probs=69.1
Q ss_pred HHHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHh--CCCCEEEeeCCCCCCCH--------HHHHHHHHHHHHHH
Q psy7366 68 NTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL--GNPPLIFLDEPTSGMDP--------GARRFLWTCIERAV 137 (566)
Q Consensus 68 ~~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~--~~p~vLlLDEPt~~LD~--------~~~~~l~~~l~~l~ 137 (566)
+.++.+.++.++.....-.....+|.++.+ +.++.+. .+|+++|+|+++...++ ....++.+.|+.++
T Consensus 273 ~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lA 350 (454)
T 2r6a_A 273 WGKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALA 350 (454)
T ss_dssp HHHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 345556666554433222234578999876 5556665 78999999999998843 34466667777775
Q ss_pred h-CCCEEEEecC---------C--hh--------HHHhhcCEEEEEeCCEE
Q psy7366 138 S-EGRCVILTSH---------N--ME--------ECEALCTKLTIMVNGQF 168 (566)
Q Consensus 138 ~-~g~tviiisH---------~--~~--------~~~~~~d~i~vl~~G~i 168 (566)
+ .|++||+++| + +. .+...||.|++|+.++.
T Consensus 351 ke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 351 RELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp HHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred HHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 4 4999999999 2 22 57788999999987764
No 310
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.91 E-value=1.6e-06 Score=92.35 Aligned_cols=43 Identities=12% Similarity=0.288 Sum_probs=36.9
Q ss_pred CCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCcEEEEEccC
Q psy7366 494 GNPPLIFLDEPTSGMDP-GARRFLWTCIERAVSEGRCVILTSHN 536 (566)
Q Consensus 494 ~~p~lllLDEPt~gLD~-~~~~~l~~~l~~~~~~g~tvl~vsHd 536 (566)
.+|++|++||+..-.+. ..+..++..+..+.+.|+.||++||+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 48999999999876654 67888999998887778999999997
No 311
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.90 E-value=1.5e-05 Score=81.02 Aligned_cols=131 Identities=11% Similarity=0.202 Sum_probs=78.8
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHH
Q psy7366 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREH 439 (566)
Q Consensus 360 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~ 439 (566)
..|+.+.--+.+|+++.|.|++|+|||||...++...-. .| ..+.|+.-+ ++..+.
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g-----------------~~vl~~slE------~s~~~l 111 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND-----------------DVVNLHSLE------MGKKEN 111 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT-----------------CEEEEEESS------SCHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC-----------------CeEEEEECC------CCHHHH
Confidence 356666656899999999999999999998877642110 11 135565432 455443
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy7366 440 LEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTC 519 (566)
Q Consensus 440 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~ 519 (566)
..-.. .....+.+....+.. ..||.++.+|+..|...+.++++++.|+|... ...+...
T Consensus 112 ~~R~~---------------~~~~~i~~~~l~~~~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~~~i~~~ 170 (315)
T 3bh0_A 112 IKRLI---------------VTAGSINAQKIKAAR-RDFASEDWGKLSMAIGEISNSNINIFDKAGQS-----VNYIWSK 170 (315)
T ss_dssp HHHHH---------------HHHTTCCHHHHHSCH-HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----HHHHHHH
T ss_pred HHHHH---------------HHHcCCCHHHHhcCC-CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----HHHHHHH
Confidence 22111 111111111111111 23888999999988888888889999988643 3345555
Q ss_pred HHHHHhC-CcE--EEEEcc
Q psy7366 520 IERAVSE-GRC--VILTSH 535 (566)
Q Consensus 520 l~~~~~~-g~t--vl~vsH 535 (566)
+++++++ |.. +|+|-|
T Consensus 171 i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 171 TRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HHHHHHTSSSCCEEEEEEC
T ss_pred HHHHHHhcCCCCeEEEEeC
Confidence 6666544 666 777644
No 312
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.89 E-value=1.3e-07 Score=102.39 Aligned_cols=60 Identities=13% Similarity=0.173 Sum_probs=49.2
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE--ecCChhHHHhhcC
Q psy7366 87 EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL--TSHNMEECEALCT 158 (566)
Q Consensus 87 ~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii--isH~~~~~~~~~d 158 (566)
....+|+||+||.++|. + | |+||||.+...+++.|.++.+.|.|+++ +||+++++...|+
T Consensus 397 ~~~~~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 397 QTMWVRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp EEEEESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred EEEEEeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 44568999999877651 1 7 9999999988888888877667889985 9999999998885
No 313
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.87 E-value=9.9e-07 Score=84.74 Aligned_cols=57 Identities=21% Similarity=0.202 Sum_probs=44.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHCCC---CCCccEEEE--------cCccCCC--chHHhcCceEEEecCC
Q psy7366 372 GECFGLLGLNGAGKTTTFKMLTGAI---KPTSGNAYV--------MNHSIRD--SMDLVRSYIGYCPQFD 428 (566)
Q Consensus 372 Ge~~~l~G~NGsGKSTLl~~i~G~~---~~~~G~i~~--------~g~~~~~--~~~~~~~~i~~v~q~~ 428 (566)
+.+++|+||+||||||+.++|++.+ .++.|.+.. .|.++.. ....+++.+++++|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 5689999999999999999998766 678898877 6666542 2334566788888863
No 314
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.86 E-value=4.7e-08 Score=100.55 Aligned_cols=46 Identities=22% Similarity=0.257 Sum_probs=39.1
Q ss_pred CcceeeeeeEEEeCCcE--EEEEcCCCCcHHHHHHHHHCCCCCCccEE
Q psy7366 358 TKPAVNQISFGVGRGEC--FGLLGLNGAGKTTTFKMLTGAIKPTSGNA 403 (566)
Q Consensus 358 ~~~~l~~isl~i~~Ge~--~~l~G~NGsGKSTLl~~i~G~~~~~~G~i 403 (566)
...+++.++..+..|++ +.+.||+|+||||+++++++.+.+..+.+
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~ 77 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSN 77 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccc
Confidence 45578888888999998 99999999999999999999876665543
No 315
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.83 E-value=2.1e-07 Score=86.08 Aligned_cols=123 Identities=13% Similarity=0.000 Sum_probs=71.2
Q ss_pred CCcchHHHHHhccccCC---C---ccCCCCCc------ccccc-ccee----EEcCCCCCCCCCCHHHHHHHHHHhcCCC
Q psy7366 1 MGLTTTPKRVVTLLLTT---Q---KVPGSNPT------IDKNL-SYIG----YCPQFDALNDRLTPREHLEFYSRVRNVP 63 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~---~---~~~~~~~~------~~~~~-~~ig----~v~Q~~~l~~~~tv~e~l~~~~~~~~~~ 63 (566)
+||||+++.+++.+-+. . .+.+.... .+..+ ..+| +++|++.++- .+ + +
T Consensus 13 sGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i----~~---------~-~ 78 (171)
T 2f1r_A 13 SGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFI----RR---------V-S 78 (171)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEE----EE---------C-C
T ss_pred CCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEE----ec---------C-C
Confidence 48999999999998764 1 22222201 11212 2467 8899876551 00 0 0
Q ss_pred hhhHHHHHHHHHHH-c-CCCcccccccccCChhHHHHHHHHHHHhCCCCEE-------EeeCCC---CCCCHHHHHHHHH
Q psy7366 64 SVLLNTIVNESLNK-F-ALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLI-------FLDEPT---SGMDPGARRFLWT 131 (566)
Q Consensus 64 ~~~~~~~~~~~l~~-~-gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vL-------lLDEPt---~~LD~~~~~~l~~ 131 (566)
.+....+.++++. + |++... ...|||||+||++||||++.+|++. +=|.|. -.+|....+.+.+
T Consensus 79 -~~~~a~l~~~i~~~l~g~dt~i---~EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~ 154 (171)
T 2f1r_A 79 -EEEGNDLDWIYERYLSDYDLVI---TEGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAE 154 (171)
T ss_dssp -HHHHTCHHHHHHHHTTTCSEEE---EESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHH
T ss_pred -hhhhhCHHHHHHhhCCCCCEEE---ECCcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHH
Confidence 0011134455554 4 333222 2349999999999999999999874 235553 2355667788888
Q ss_pred HHHHHHhCCC
Q psy7366 132 CIERAVSEGR 141 (566)
Q Consensus 132 ~l~~l~~~g~ 141 (566)
+|.+...+|.
T Consensus 155 ~i~~~~~~~~ 164 (171)
T 2f1r_A 155 FILSLLREGG 164 (171)
T ss_dssp HHHHHHTC--
T ss_pred HHHHHHhccC
Confidence 8877666664
No 316
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.81 E-value=6.8e-06 Score=84.88 Aligned_cols=29 Identities=24% Similarity=0.431 Sum_probs=25.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCCCCC
Q psy7366 370 GRGECFGLLGLNGAGKTTTFKMLTGAIKP 398 (566)
Q Consensus 370 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~ 398 (566)
..+..+.|.||+|+|||||++.+++...+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45678999999999999999999987654
No 317
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.81 E-value=1.1e-05 Score=76.37 Aligned_cols=31 Identities=26% Similarity=0.261 Sum_probs=28.2
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHHCCCC
Q psy7366 367 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 397 (566)
Q Consensus 367 l~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~ 397 (566)
-++.+|.+++|+|++||||||+.++|++.++
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3678899999999999999999999999864
No 318
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.77 E-value=7.8e-07 Score=95.77 Aligned_cols=97 Identities=10% Similarity=0.059 Sum_probs=66.3
Q ss_pred hhhHHHHHHHHHHHcCCCcccc---cccccCChhHHHHH----------HHHHHHhCCCC-EEEeeCCCCCCCHHHHHHH
Q psy7366 64 SVLLNTIVNESLNKFALGHYSD---REVRTLSGGNKRKL----------STAIALLGNPP-LIFLDEPTSGMDPGARRFL 129 (566)
Q Consensus 64 ~~~~~~~~~~~l~~~gl~~~~~---~~~~~LSgG~kqrl----------~iA~al~~~p~-vLlLDEPt~~LD~~~~~~l 129 (566)
..++++|. +++...|+....+ +....+|+||+|+. .+|+++...|. ++++||+++.+|.. ...+
T Consensus 240 ~~EmerR~-~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~ 317 (512)
T 2ius_A 240 VNEMERRY-KLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKV 317 (512)
T ss_dssp HHHHHHHH-HHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHH
T ss_pred HHHHHHHH-HHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHH
Confidence 35666675 7788899875432 22346899998753 35666778898 89999999999843 3445
Q ss_pred HHHHHHHH----hCCCEEEEecCChh-------HHHhhcCEEEE
Q psy7366 130 WTCIERAV----SEGRCVILTSHNME-------ECEALCTKLTI 162 (566)
Q Consensus 130 ~~~l~~l~----~~g~tviiisH~~~-------~~~~~~d~i~v 162 (566)
.+.|.++. +.|.++|++||+.+ ....+.+||++
T Consensus 318 ~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 318 EELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp HHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred HHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 55555443 33789999999987 34567777754
No 319
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.74 E-value=2.8e-05 Score=80.10 Aligned_cols=76 Identities=14% Similarity=0.103 Sum_probs=53.2
Q ss_pred HHHHHHHHHhC--CCCEEEeeCCCCCC----------CH---HHHHHHHHHHHHH----HhCCCEEEEecCChhH-----
Q psy7366 97 RKLSTAIALLG--NPPLIFLDEPTSGM----------DP---GARRFLWTCIERA----VSEGRCVILTSHNMEE----- 152 (566)
Q Consensus 97 qrl~iA~al~~--~p~vLlLDEPt~~L----------D~---~~~~~l~~~l~~l----~~~g~tviiisH~~~~----- 152 (566)
+-+.++++++. +|+++|+|||++.+ |+ ...+.+.+.++++ ++.|.+||+++|....
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 45667888875 49999999999998 33 1222444555554 4569999999997542
Q ss_pred -----------HHhhcCEEEEEeCCEEEEec
Q psy7366 153 -----------CEALCTKLTIMVNGQFTCLG 172 (566)
Q Consensus 153 -----------~~~~~d~i~vl~~G~i~~~g 172 (566)
+..+||.++.++.++++-.|
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g 236 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRIETLKDG 236 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEEEEECSS
T ss_pred CCCcccCCchHhhhccceEEEEEEeeeeecC
Confidence 56789999999988766433
No 320
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.68 E-value=0.00021 Score=76.01 Aligned_cols=165 Identities=12% Similarity=0.015 Sum_probs=92.6
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHH
Q psy7366 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHL 440 (566)
Q Consensus 361 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l 440 (566)
.|+.+.--+++|+++.|.|++|+|||||...++.......|. .+.|+.-+ ++..+..
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~-----------------~vl~~slE------~~~~~l~ 245 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGV-----------------GVGIYSLE------MPAAQLT 245 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCC-----------------CEEEEESS------SCHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCC-----------------eEEEEECC------CCHHHHH
Confidence 466666558999999999999999999998877543321220 13333221 2222211
Q ss_pred HH-HHHhcC----------CCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHc--CCCCEEEEeCCCCC
Q psy7366 441 EF-YSRVRN----------VPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL--GNPPLIFLDEPTSG 507 (566)
Q Consensus 441 ~~-~~~~~~----------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~--~~p~lllLDEPt~g 507 (566)
.- .....+ +. .....++...+..+.-.+..-.....+|..+. ...++.+. .+++++++|..+.-
T Consensus 246 ~R~~~~~~~i~~~~l~~g~l~-~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~l--~~~~~~l~~~~~~~lIvID~l~~~ 322 (444)
T 2q6t_A 246 LRMMCSEARIDMNRVRLGQLT-DRDFSRLVDVASRLSEAPIYIDDTPDLTLMEV--RARARRLVSQNQVGLIIIDYLQLM 322 (444)
T ss_dssp HHHHHHHTTCCTTTCCGGGCC-HHHHHHHHHHHHHHHTSCEEEECCTTCBHHHH--HHHHHHHHHHSCCCEEEEECGGGC
T ss_pred HHHHHHHcCCCHHHHhCCCCC-HHHHHHHHHHHHHHhcCCEEEECCCCCCHHHH--HHHHHHHHHHcCCCEEEEcChhhc
Confidence 10 000000 11 11223333344433222222122345666654 33455554 58999999998754
Q ss_pred CCH----------HHHHHHHHHHHHHHhC-CcEEEEEccCH-------------H------HHHhhCCEEEEEE
Q psy7366 508 MDP----------GARRFLWTCIERAVSE-GRCVILTSHNM-------------E------ECEALCTKLTIMV 551 (566)
Q Consensus 508 LD~----------~~~~~l~~~l~~~~~~-g~tvl~vsHd~-------------~------~~~~~~drv~~l~ 551 (566)
... .....+...|+.++++ +++||+++|-- . .+...||.|++|+
T Consensus 323 ~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~ 396 (444)
T 2q6t_A 323 SGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIY 396 (444)
T ss_dssp BCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEE
T ss_pred CCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEe
Confidence 432 1224566667777665 99999999821 1 2467899999985
No 321
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.66 E-value=4.4e-06 Score=85.87 Aligned_cols=52 Identities=19% Similarity=0.174 Sum_probs=45.7
Q ss_pred cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccC
Q psy7366 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 410 (566)
Q Consensus 359 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~ 410 (566)
..+++++++.+.+|.+++|+|+||+|||||++.|+|.+.+..|+|.+-+.+.
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 4578888999999999999999999999999999999888888887766554
No 322
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.64 E-value=0.00057 Score=70.37 Aligned_cols=143 Identities=13% Similarity=0.108 Sum_probs=78.0
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcC
Q psy7366 369 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRN 448 (566)
Q Consensus 369 i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~ 448 (566)
+++|+++.|.|++|+|||||...++.......+ .+.|+.-+..+.+ . ...
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~------------------~vlyid~E~s~~~------~--~a~---- 109 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK------------------TCAFIDAEHALDP------I--YAR---- 109 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTC------------------CEEEEESSCCCCH------H--HHH----
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCC------------------eEEEEeCCCCccH------H--HHH----
Confidence 789999999999999999999777643321111 2445544322110 0 000
Q ss_pred CCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHc--CCCCEEEEeCCCCCCCHH------------HH-
Q psy7366 449 VPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL--GNPPLIFLDEPTSGMDPG------------AR- 513 (566)
Q Consensus 449 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~--~~p~lllLDEPt~gLD~~------------~~- 513 (566)
.+++.. .+-.+..-+.+ .+-..+++.++ .+++++++|+++.-.... .+
T Consensus 110 ---------------~~g~~~-~~l~i~~~~~~-e~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~ 172 (356)
T 1u94_A 110 ---------------KLGVDI-DNLLCSQPDTG-EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAA 172 (356)
T ss_dssp ---------------HTTCCG-GGCEEECCSSH-HHHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHH
T ss_pred ---------------HcCCCh-hheeeeCCCCH-HHHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHH
Confidence 111110 00000011112 23344555553 689999999998866311 11
Q ss_pred HHHHHHHHHH---H-hCCcEEEEEccCHH----------------HHHhhCCEEEEEECCEEEEe
Q psy7366 514 RFLWTCIERA---V-SEGRCVILTSHNME----------------ECEALCTKLTIMVNGQFTCL 558 (566)
Q Consensus 514 ~~l~~~l~~~---~-~~g~tvl~vsHd~~----------------~~~~~~drv~~l~~G~i~~~ 558 (566)
+.+.+.++++ + +.+.+||+++|-.. .+..+||-++.++..+....
T Consensus 173 r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~fg~~~~~~gG~~l~~~advrl~l~r~~~~k~ 237 (356)
T 1u94_A 173 RMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKE 237 (356)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEEC--------------CTTCSHHHHHCSEEEEEEEEEEEES
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCCcceeeeccEEEEEEEeeeecc
Confidence 2334444443 3 34999999998543 24567898888876654433
No 323
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.64 E-value=1.7e-05 Score=82.09 Aligned_cols=113 Identities=18% Similarity=0.104 Sum_probs=74.3
Q ss_pred CCcchHHHHHhccccCCCc---cCCCCC-cccccccceeEEc-CCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy7366 1 MGLTTTPKRVVTLLLTTQK---VPGSNP-TIDKNLSYIGYCP-QFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 75 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~~---~~~~~~-~~~~~~~~ig~v~-Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l 75 (566)
.||||++|++++.+-+++. +.+... ........+++++ |++.+
T Consensus 186 sGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------------------------------- 233 (361)
T 2gza_A 186 SGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------------------------------- 233 (361)
T ss_dssp SCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC-------------------------------------
T ss_pred CCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCcccc--------------------------------
Confidence 5999999999999876541 111110 0111234577887 55321
Q ss_pred HHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHh
Q psy7366 76 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEA 155 (566)
Q Consensus 76 ~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~ 155 (566)
.++++..++-.|+.++..+|+.+++|||.. .+..++|+.+.....|++.++|..+ +..
T Consensus 234 --------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~g~~~~l~t~H~~~-~~~ 291 (361)
T 2gza_A 234 --------------EENAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAASGHGGSITSCHAGS-CEL 291 (361)
T ss_dssp -------------------CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHHTTCCSCEEEEECSS-HHH
T ss_pred --------------ccccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHhcCCCeEEEEECCCC-HHH
Confidence 013444678889999999999999999986 3456677776443457899999965 777
Q ss_pred hcCEEEEEeCCE
Q psy7366 156 LCTKLTIMVNGQ 167 (566)
Q Consensus 156 ~~d~i~vl~~G~ 167 (566)
.+||+..|..|.
T Consensus 292 ~~~Rl~~l~~~~ 303 (361)
T 2gza_A 292 TFERLALMVLQN 303 (361)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHHhcc
Confidence 899999887764
No 324
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.64 E-value=2.4e-06 Score=87.53 Aligned_cols=135 Identities=14% Similarity=0.074 Sum_probs=83.9
Q ss_pred CCcchHHHHHhccc----cC--CCccC-CCCCcc---cccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCC----hhh
Q psy7366 1 MGLTTTPKRVVTLL----LT--TQKVP-GSNPTI---DKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVP----SVL 66 (566)
Q Consensus 1 ~Gktt~~k~~~~~~----~~--~~~~~-~~~~~~---~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~----~~~ 66 (566)
.||||++|++.+.+ .+ |.... +..... ......|+++.|.+.+.+ ++.|++....+..+.+ ...
T Consensus 62 ~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~ 139 (334)
T 1in4_A 62 LGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNK--AVEELLYSAIEDFQIDIMIGKGP 139 (334)
T ss_dssp SSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETGGGCCH--HHHHHHHHHHHTSCCCC------
T ss_pred CcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcchhhcCH--HHHHHHHHHHHhcccceeeccCc
Confidence 59999999999987 21 11110 000000 011346999999887765 7888885544433321 112
Q ss_pred HHHHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEE
Q psy7366 67 LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS-EGRCVIL 145 (566)
Q Consensus 67 ~~~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvii 145 (566)
..+.+...+..+++.. ..+.+..||+|++||+.++ .+||+.+.+++.++|++..+ .|
T Consensus 140 ~~~~i~~~l~~~~li~-at~~~~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~----- 197 (334)
T 1in4_A 140 SAKSIRIDIQPFTLVG-ATTRSGLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASLMD----- 197 (334)
T ss_dssp ---------CCCEEEE-EESCGGGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHTT-----
T ss_pred ccccccccCCCeEEEE-ecCCcccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHcC-----
Confidence 2344555566666644 5677889999999998655 88999999999999998754 34
Q ss_pred ecCChhHHHhhcCE
Q psy7366 146 TSHNMEECEALCTK 159 (566)
Q Consensus 146 isH~~~~~~~~~d~ 159 (566)
++|+.+.+..+|++
T Consensus 198 ~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 198 VEIEDAAAEMIAKR 211 (334)
T ss_dssp CCBCHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHh
Confidence 47888888888775
No 325
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.62 E-value=2.7e-05 Score=70.06 Aligned_cols=30 Identities=20% Similarity=0.377 Sum_probs=24.9
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH
Q psy7366 363 NQISFGVGRGECFGLLGLNGAGKTTTFKMLT 393 (566)
Q Consensus 363 ~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~ 393 (566)
++.++++.+| +.+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 4455666655 99999999999999999987
No 326
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.61 E-value=7e-06 Score=89.73 Aligned_cols=49 Identities=20% Similarity=0.219 Sum_probs=42.6
Q ss_pred cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCc
Q psy7366 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 408 (566)
Q Consensus 359 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~ 408 (566)
..++.++++++ +|++++|+||||+|||||+++|++.+.+..|.|.+.|.
T Consensus 96 ~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~ 144 (543)
T 3m6a_A 96 YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGV 144 (543)
T ss_dssp HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-
T ss_pred HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEeccc
Confidence 34677778777 89999999999999999999999999988899887774
No 327
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.61 E-value=1.8e-05 Score=72.29 Aligned_cols=34 Identities=24% Similarity=0.268 Sum_probs=28.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCc
Q psy7366 371 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 408 (566)
Q Consensus 371 ~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~ 408 (566)
.|.+++|+||||||||||+++|++.+.+ +.+++.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~d 36 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDSD 36 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEecc
Confidence 4678999999999999999999998754 556643
No 328
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.60 E-value=0.00044 Score=66.75 Aligned_cols=29 Identities=34% Similarity=0.378 Sum_probs=24.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCCCccE
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~~~~~~G~ 402 (566)
.++|+|++|+|||||++.|+|...+.++.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~ 59 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT 59 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence 57899999999999999999987766653
No 329
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.58 E-value=0.00036 Score=69.61 Aligned_cols=59 Identities=17% Similarity=0.196 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHHHcCCCCEEEEeCCCCCCCH----------HHHHHHHHHHHHHHh----CCcEEEEEccCHH
Q psy7366 480 GGNKRKLSTAIALLGNPPLIFLDEPTSGMDP----------GARRFLWTCIERAVS----EGRCVILTSHNME 538 (566)
Q Consensus 480 gGqkqrv~la~al~~~p~lllLDEPt~gLD~----------~~~~~l~~~l~~~~~----~g~tvl~vsHd~~ 538 (566)
++++.+..+..+...+|.+|++||+.+-++. .....+...+..... .+..||.+|++.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~ 170 (297)
T 3b9p_A 98 GEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ 170 (297)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred HHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence 4566777777888889999999999776553 223334444444321 2356778888753
No 330
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.56 E-value=3.7e-05 Score=87.87 Aligned_cols=33 Identities=24% Similarity=0.301 Sum_probs=29.3
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC
Q psy7366 366 SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP 398 (566)
Q Consensus 366 sl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~ 398 (566)
+|.+.+|+.+.|+||||+|||||+++|+|.+..
T Consensus 232 ~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred hcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 346789999999999999999999999998753
No 331
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.56 E-value=5.9e-06 Score=88.16 Aligned_cols=132 Identities=11% Similarity=0.087 Sum_probs=79.7
Q ss_pred CCcchHHHHHhccccCCC-c--cCCCCCccc---------ccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHH
Q psy7366 1 MGLTTTPKRVVTLLLTTQ-K--VPGSNPTID---------KNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLN 68 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~-~--~~~~~~~~~---------~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~ 68 (566)
+|||||++.+++++.+.. . +.+.+.... ....+|+|++|++.+++.+++.+++.++.. .+.+.-
T Consensus 304 SGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a~~-~~~DvV--- 379 (503)
T 2yhs_A 304 VGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA-RNIDVL--- 379 (503)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHHHH-TTCSEE---
T ss_pred ccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHHHh-cCCCEE---
Confidence 599999999999987533 1 222222111 123469999999888888899999987643 222210
Q ss_pred HHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHh-CCCC-EEEeeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEE
Q psy7366 69 TIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL-GNPP-LIFLDEPTSGMDPGARRFLWTCIERAV-SEGRCVIL 145 (566)
Q Consensus 69 ~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~-~~p~-vLlLDEPt~~LD~~~~~~l~~~l~~l~-~~g~tvii 145 (566)
+++..|........+.+| +|++.+++++. ..|+ +||...||+|.|.. +.++.+. ..|.|.|+
T Consensus 380 -----LIDTaGrl~~~~~lm~EL----~kiv~iar~l~~~~P~evLLvLDattGq~al------~~ak~f~~~~~itgvI 444 (503)
T 2yhs_A 380 -----IADTAGRLQNKSHLMEEL----KKIVRVMKKLDVEAPHEVMLTIDASTGQNAV------SQAKLFHEAVGLTGIT 444 (503)
T ss_dssp -----EECCCCSCCCHHHHHHHH----HHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH------HHHHHHHHHTCCSEEE
T ss_pred -----EEeCCCccchhhhHHHHH----HHHHHHHHHhccCCCCeeEEEecCcccHHHH------HHHHHHHhhcCCCEEE
Confidence 123334332222233444 47888888774 4574 44444488886544 2344443 35889999
Q ss_pred ecCChhH
Q psy7366 146 TSHNMEE 152 (566)
Q Consensus 146 isH~~~~ 152 (566)
+|| ++.
T Consensus 445 lTK-LD~ 450 (503)
T 2yhs_A 445 LTK-LDG 450 (503)
T ss_dssp EEC-GGG
T ss_pred EEc-CCC
Confidence 999 444
No 332
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.55 E-value=1.6e-05 Score=73.35 Aligned_cols=40 Identities=35% Similarity=0.313 Sum_probs=33.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCCCCCCcc--EEEEcCccC
Q psy7366 370 GRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG--NAYVMNHSI 410 (566)
Q Consensus 370 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G--~i~~~g~~~ 410 (566)
.+|++++|+|++||||||+.++|++.+++ .| .|.+++..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 47899999999999999999999998765 56 666776554
No 333
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.53 E-value=2e-05 Score=81.15 Aligned_cols=42 Identities=21% Similarity=0.199 Sum_probs=36.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCC
Q psy7366 370 GRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 411 (566)
Q Consensus 370 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~ 411 (566)
+++.+++|+|++|||||||++.|+|.+++..|+|.+.+.+..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 457799999999999999999999999888899888776553
No 334
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.51 E-value=3.6e-05 Score=74.41 Aligned_cols=48 Identities=13% Similarity=0.143 Sum_probs=34.5
Q ss_pred eeeeeeEEEe---CCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCcc
Q psy7366 361 AVNQISFGVG---RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 409 (566)
Q Consensus 361 ~l~~isl~i~---~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~ 409 (566)
-|.++||.+. +|.+++|.|++||||||+++.|+..+.+ .+.+.....+
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~~p 62 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTREP 62 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEECTT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeecCC
Confidence 4677777776 9999999999999999999999999887 6777655444
No 335
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.39 E-value=2.1e-06 Score=88.11 Aligned_cols=46 Identities=22% Similarity=0.377 Sum_probs=40.7
Q ss_pred cccCChhHHHHHHHHHHHhC------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHH
Q psy7366 88 VRTLSGGNKRKLSTAIALLG------NPPLIFLDEPTSGMDPGARRFLWTCIERAV 137 (566)
Q Consensus 88 ~~~LSgG~kqrl~iA~al~~------~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~ 137 (566)
..++|+|++|++..|.+++. +|+++. ||++|+.++++|++.|.++.
T Consensus 208 ~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 208 GERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp CHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 35689999999999999987 688886 99999999999999998864
No 336
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.38 E-value=0.00031 Score=70.57 Aligned_cols=29 Identities=24% Similarity=0.307 Sum_probs=25.5
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366 368 GVGRGECFGLLGLNGAGKTTTFKMLTGAI 396 (566)
Q Consensus 368 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~ 396 (566)
.+.++..+.|.||+|+|||||.++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 35677889999999999999999999865
No 337
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.37 E-value=5.8e-06 Score=87.20 Aligned_cols=108 Identities=10% Similarity=-0.013 Sum_probs=67.7
Q ss_pred CCcchHHHHHhccccCCC--ccCCCCCcc--------cccccceeEEc---------CCCCCC--CC----CCHHHHHHH
Q psy7366 1 MGLTTTPKRVVTLLLTTQ--KVPGSNPTI--------DKNLSYIGYCP---------QFDALN--DR----LTPREHLEF 55 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~--~~~~~~~~~--------~~~~~~ig~v~---------Q~~~l~--~~----~tv~e~l~~ 55 (566)
.|||||++++++.+.+.. .+....+.. ......+|+.+ |+|..+ .. .|+.+++.+
T Consensus 178 SGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a 257 (418)
T 1p9r_A 178 SGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQA 257 (418)
T ss_dssp SCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHH
Confidence 599999999999987543 111111110 01123456644 998763 33 588898876
Q ss_pred HHHhc----CCChhhHHHHHHHHHHHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEE
Q psy7366 56 YSRVR----NVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIF 113 (566)
Q Consensus 56 ~~~~~----~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLl 113 (566)
...-. .+....... +.+.|..+|++.. ..+.+|||||+|| ||++|+.+|++..
T Consensus 258 ~~tGhlv~~tlh~~~~~~-~i~rL~~lgl~~~--~~~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 258 SLTGHLVMSTLHTNTAVG-AVTRLRDMGIEPF--LISSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp HHTTCEEEEEECCSSSHH-HHHHHHHHTCCHH--HHHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred HHhCCCcccccchhhHHH-HHHHHHHcCCcHH--HHHHHHHHHHHHH--hhhhhcCCCCccC
Confidence 53110 011111222 2335677888754 3788999999999 9999999999876
No 338
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.34 E-value=0.00058 Score=69.24 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=24.5
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHC
Q psy7366 368 GVGRGECFGLLGLNGAGKTTTFKMLTG 394 (566)
Q Consensus 368 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G 394 (566)
-+++|+++.|.||+|+|||||...++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999987774
No 339
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.33 E-value=9.8e-05 Score=78.47 Aligned_cols=159 Identities=11% Similarity=0.079 Sum_probs=76.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCC------------CCccEEEEcCccCC--CchHHhcCceEEEecCCCCCCCCCHHHH
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGAIK------------PTSGNAYVMNHSIR--DSMDLVRSYIGYCPQFDALNDRLTPREH 439 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~~~------------~~~G~i~~~g~~~~--~~~~~~~~~i~~v~q~~~l~~~~tv~e~ 439 (566)
.++|+|+||+|||||++.|+|... +.+|.+.++|.++. ... -.++..++.+|....+..++..++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~-G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTA-GLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCS-CC-----------CCSCCHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECC-CCccccccchhhHHHHHHHHHHHH
Confidence 689999999999999999999864 66799999997542 111 112223444454444444445555
Q ss_pred HHHHHH------h-cCCCchHHHHHHHHHHHHcCCCCc-cccCcCcCChhH--HHHH--HHHHHHc--CCCCEEEEeCCC
Q psy7366 440 LEFYSR------V-RNVPSVLLNTIVNESLNKFALGHY-SDREVRTLSGGN--KRKL--STAIALL--GNPPLIFLDEPT 505 (566)
Q Consensus 440 l~~~~~------~-~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGq--kqrv--~la~al~--~~p~lllLDEPt 505 (566)
+...-. . .+.. .....+.+.+...+..-. .--+...+..-+ ...+ .+++.+. ...+++ ++
T Consensus 261 i~~ad~vllv~d~~~~~~--~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 334 (439)
T 1mky_A 261 IEKADVVVIVLDATQGIT--RQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI----FT 334 (439)
T ss_dssp HHHCSEEEEEEETTTCCC--HHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE----EC
T ss_pred HhhCCEEEEEEeCCCCCC--HHHHHHHHHHHHcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEE----EE
Confidence 443210 0 1111 122334455555543210 000111111111 1111 3334332 334444 48
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHHH
Q psy7366 506 SGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC 540 (566)
Q Consensus 506 ~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~ 540 (566)
|+++-.....+++.+.+...+ .+.-+.|+.++.+
T Consensus 335 SA~~g~gv~~l~~~i~~~~~~-~~~~i~t~~ln~~ 368 (439)
T 1mky_A 335 SADKGWNIDRMIDAMNLAYAS-YTTKVPSSAINSA 368 (439)
T ss_dssp BTTTTBSHHHHHHHHHHHHHH-HTCCCCHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHh-hcccCCHHHHHHH
Confidence 888888888888777665432 1122355555443
No 340
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.31 E-value=3.5e-05 Score=79.34 Aligned_cols=51 Identities=22% Similarity=0.339 Sum_probs=45.7
Q ss_pred EEEeeeEEEeCCcCCCcceee--------------eeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366 343 LVVKRLFKIYANSKGTKPAVN--------------QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI 396 (566)
Q Consensus 343 l~~~~l~~~y~~~~~~~~~l~--------------~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~ 396 (566)
+.++|++..|+. .+.+|+ |+.+.+.+|+.++|+||+|+|||||++.|++..
T Consensus 134 i~Fe~ltp~yP~---er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 134 ILFENLTPLHAN---SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CCTTTSCEESCC---SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred ceeccccccCCC---CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 667899999974 567888 899999999999999999999999999999865
No 341
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.30 E-value=6.9e-05 Score=78.94 Aligned_cols=48 Identities=23% Similarity=0.230 Sum_probs=43.5
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC
Q psy7366 363 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 412 (566)
Q Consensus 363 ~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~ 412 (566)
++++|+ +|++++++|+|||||||++..|++.+.+..|+|.+.+.++..
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r 138 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence 677887 899999999999999999999999999988999998877654
No 342
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.27 E-value=0.00017 Score=67.63 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHCCCC
Q psy7366 373 ECFGLLGLNGAGKTTTFKMLTGAIK 397 (566)
Q Consensus 373 e~~~l~G~NGsGKSTLl~~i~G~~~ 397 (566)
..+.|.||+|+|||||+++|+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4677999999999999999997654
No 343
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.27 E-value=0.00053 Score=69.44 Aligned_cols=42 Identities=14% Similarity=0.138 Sum_probs=32.4
Q ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEEcc
Q psy7366 494 GNPPLIFLDEPTS-GMDPGARRFLWTCIERAVSEGRCVILTSH 535 (566)
Q Consensus 494 ~~p~lllLDEPt~-gLD~~~~~~l~~~l~~~~~~g~tvl~vsH 535 (566)
.++++|++||+.. .-+...+..+...+..+.+.+..+|++|+
T Consensus 97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~ 139 (324)
T 1l8q_A 97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASD 139 (324)
T ss_dssp HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 4699999999865 33457888899999888777777777765
No 344
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.25 E-value=4.7e-05 Score=72.32 Aligned_cols=43 Identities=23% Similarity=0.193 Sum_probs=36.9
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCcc--EEEEcCccC
Q psy7366 368 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG--NAYVMNHSI 410 (566)
Q Consensus 368 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G--~i~~~g~~~ 410 (566)
.+.+|.+++|+|++||||||+.+.|++.+.|..| .+.+++..+
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 3567899999999999999999999999887788 788876543
No 345
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.24 E-value=0.00014 Score=68.73 Aligned_cols=30 Identities=20% Similarity=0.377 Sum_probs=24.4
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH
Q psy7366 363 NQISFGVGRGECFGLLGLNGAGKTTTFKMLT 393 (566)
Q Consensus 363 ~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~ 393 (566)
.+.++++.+| +.+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 3455666664 99999999999999999885
No 346
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.17 E-value=5.9e-05 Score=75.84 Aligned_cols=49 Identities=20% Similarity=0.116 Sum_probs=42.7
Q ss_pred ee-eeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCC
Q psy7366 363 NQ-ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 412 (566)
Q Consensus 363 ~~-isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~ 412 (566)
++ ++|+.+ |.+++++|+||+||||++..|++.+.+..|+|.+.+.+...
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 45 778766 99999999999999999999999998888899888777644
No 347
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.16 E-value=0.00027 Score=64.56 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366 370 GRGECFGLLGLNGAGKTTTFKMLTGAI 396 (566)
Q Consensus 370 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~ 396 (566)
.+|..++|+|++|+|||||++.++|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367889999999999999999999865
No 348
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.15 E-value=0.00033 Score=66.97 Aligned_cols=43 Identities=16% Similarity=0.211 Sum_probs=29.8
Q ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhCCcE-EEEEccC
Q psy7366 494 GNPPLIFLDEPTSG-MDPGARRFLWTCIERAVSEGRC-VILTSHN 536 (566)
Q Consensus 494 ~~p~lllLDEPt~g-LD~~~~~~l~~~l~~~~~~g~t-vl~vsHd 536 (566)
.++.+|++||...- -+......+.+++......+.. +|++|+.
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~ 147 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASA 147 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESS
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 46899999996542 1233377788888887666654 7777763
No 349
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.11 E-value=9.8e-05 Score=71.36 Aligned_cols=147 Identities=11% Similarity=0.026 Sum_probs=74.1
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcC
Q psy7366 369 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRN 448 (566)
Q Consensus 369 i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~ 448 (566)
+.+|+.+++.||+||||||++.++........|. ...++++.+.|......++.+++.....
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~---------------~~~~~~l~~~p~~~la~q~~~~~~~~~~--- 134 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR---------------AAECNIVVTQPRRISAVSVAERVAFERG--- 134 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC---------------GGGCEEEEEESSHHHHHHHHHHHHHTTT---
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC---------------CCceEEEEeccchHHHHHHHHHHHHHhc---
Confidence 4578999999999999999988764321111110 1134566665543222334444432110
Q ss_pred CCchHHHHHHHHHHHHcCC----CCc---cccCcCcCChhHHHHHHHHHHHcCCCCEEEEeCCCC-CCCHHHHHHHHHHH
Q psy7366 449 VPSVLLNTIVNESLNKFAL----GHY---SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTS-GMDPGARRFLWTCI 520 (566)
Q Consensus 449 ~~~~~~~~~~~~~l~~~~l----~~~---~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~-gLD~~~~~~l~~~l 520 (566)
..- -...|. ... .+..+--.+.|...+.. ...+.+-+++++||.-. ++|........+.+
T Consensus 135 ~~~----------~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i 202 (235)
T 3llm_A 135 EEP----------GKSCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDV 202 (235)
T ss_dssp CCT----------TSSEEEEETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHH
T ss_pred ccc----------CceEEEeechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHH
Confidence 000 000000 000 01112224456655553 33578899999999976 68777664443433
Q ss_pred HHHHhCCcEEEE-EccCHHHHHhhCC
Q psy7366 521 ERAVSEGRCVIL-TSHNMEECEALCT 545 (566)
Q Consensus 521 ~~~~~~g~tvl~-vsHd~~~~~~~~d 545 (566)
......-.++++ +|.+.+.+.++.+
T Consensus 203 ~~~~~~~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 203 VQAYPEVRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp HHHCTTSEEEEEECSSCCHHHHHHTT
T ss_pred HhhCCCCeEEEEecCCCHHHHHHHcC
Confidence 332222233433 4666665555543
No 350
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.10 E-value=0.0003 Score=70.56 Aligned_cols=32 Identities=31% Similarity=0.330 Sum_probs=26.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHCCCCCCccEE
Q psy7366 372 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA 403 (566)
Q Consensus 372 Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i 403 (566)
...+.|.||+|+||||+.++|++...+..|.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 35788999999999999999999887665543
No 351
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.08 E-value=0.00077 Score=67.91 Aligned_cols=58 Identities=12% Similarity=0.161 Sum_probs=42.1
Q ss_pred HHHHHHHcCCCcccccccccCChhHHHHH---HHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHH
Q psy7366 71 VNESLNKFALGHYSDREVRTLSGGNKRKL---STAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERA 136 (566)
Q Consensus 71 ~~~~l~~~gl~~~~~~~~~~LSgG~kqrl---~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l 136 (566)
+..+++.+|++. +..+|+|+.+++ +|++++..+|+++|+|||.. ......+.+.|+.+
T Consensus 151 L~~~~~~~gl~~-----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l 211 (306)
T 1vma_A 151 LKIWGERVGATV-----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKV 211 (306)
T ss_dssp HHHHHHHHTCEE-----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCcE-----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHH
Confidence 344555667653 346789999999 99999999999999999974 34455555555554
No 352
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.07 E-value=0.00033 Score=64.99 Aligned_cols=34 Identities=32% Similarity=0.467 Sum_probs=20.4
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHC
Q psy7366 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 394 (566)
Q Consensus 360 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G 394 (566)
.+++++++..++. .++++|++|+|||||++.+.+
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 3778899988877 678999999999999999997
No 353
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.06 E-value=3.4e-06 Score=80.17 Aligned_cols=136 Identities=12% Similarity=0.070 Sum_probs=74.5
Q ss_pred CCcchHHHHHhccccCCCccCCCCCcccccccceeEEcCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHHcC-
Q psy7366 1 MGLTTTPKRVVTLLLTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFA- 79 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g- 79 (566)
.||||++|++.+++-+. + ..+|+++++...+.. +..+++.... ..+.+.........+.+..+.
T Consensus 33 sGKSTl~~~l~~~~~~~----g---------~~~g~v~~d~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~ 97 (208)
T 3c8u_A 33 SGKSTLSNPLAAALSAQ----G---------LPAEVVPMDGFHLDN-RLLEPRGLLP-RKGAPETFDFEGFQRLCHALKH 97 (208)
T ss_dssp SCTHHHHHHHHHHHHHT----T---------CCEEEEESGGGBCCH-HHHGGGTCGG-GTTSGGGBCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhc----C---------CceEEEecCCCcCCH-HHHHHhcccc-cCCCCchhhHHHHHHHHHHHhc
Confidence 59999999999998532 1 237888888654432 2222221000 112211111122233333332
Q ss_pred ---CCcccccccccCChhHHHHHHHH-HHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhH-HH
Q psy7366 80 ---LGHYSDREVRTLSGGNKRKLSTA-IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEE-CE 154 (566)
Q Consensus 80 ---l~~~~~~~~~~LSgG~kqrl~iA-~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~-~~ 154 (566)
+..........+|+||+|++++| ++++.++.++++|||. +..+.. .=-.++++++..+. +.
T Consensus 98 ~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~-----------~~~l~~---~~d~~i~vd~~~~~~~~ 163 (208)
T 3c8u_A 98 QERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG-----------WRDLTA---IWDVSIRLEVPMADLEA 163 (208)
T ss_dssp CSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT-----------GGGGGG---TCSEEEEECCCHHHHHH
T ss_pred CCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCch-----------hHHHHH---hcCEEEEEeCCHHHHHH
Confidence 21112223345799999999887 7777777777777773 111122 22368888888877 56
Q ss_pred hhcCEEEEEeCCE
Q psy7366 155 ALCTKLTIMVNGQ 167 (566)
Q Consensus 155 ~~~d~i~vl~~G~ 167 (566)
+++.|. ++.|.
T Consensus 164 R~~~R~--~~~g~ 174 (208)
T 3c8u_A 164 RLVQRW--LDHGL 174 (208)
T ss_dssp HHHHHH--HHTTC
T ss_pred HHHHHH--HhcCC
Confidence 677772 34454
No 354
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.04 E-value=0.00013 Score=67.64 Aligned_cols=41 Identities=24% Similarity=0.280 Sum_probs=33.4
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEE-EcCc
Q psy7366 368 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY-VMNH 408 (566)
Q Consensus 368 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~-~~g~ 408 (566)
...+|.+++|+|++||||||+.+.|++.+.+..|.+. +++.
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d 50 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD 50 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence 3457899999999999999999999998877666653 4443
No 355
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.02 E-value=6.5e-05 Score=77.73 Aligned_cols=53 Identities=17% Similarity=0.068 Sum_probs=36.1
Q ss_pred eEEEeeeEEEeCCcCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEE
Q psy7366 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 404 (566)
Q Consensus 342 ~l~~~~l~~~y~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~ 404 (566)
.+.+.++.+.|+ .+.++++++|+| +|+|++|+|||||++.|.|...+..|.+.
T Consensus 17 ~v~~~~l~~~~~----~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~ 69 (361)
T 2qag_A 17 YVGFANLPNQVH----RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIP 69 (361)
T ss_dssp ----CCHHHHHH----THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-------
T ss_pred eEEeccchHHhC----CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCccc
Confidence 367778877775 466788999887 89999999999999999988666555443
No 356
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.01 E-value=8.2e-05 Score=73.63 Aligned_cols=45 Identities=13% Similarity=0.021 Sum_probs=35.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHHHHhhCCEEE
Q psy7366 504 PTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLT 548 (566)
Q Consensus 504 Pt~gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~~~~~~drv~ 548 (566)
|+|+.+......+.+.+.+.... ..+..+.+|..+++...++++.
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~e~~~~~l~ 189 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIEREIKHIS 189 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCHHHHHHHHHHH
Confidence 99999999999999988887654 4555677888888888777653
No 357
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.98 E-value=0.00033 Score=64.91 Aligned_cols=32 Identities=25% Similarity=0.314 Sum_probs=26.4
Q ss_pred eeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCC
Q psy7366 364 QISFGVGRGECFGLLGLNGAGKTTTFKMLTGA 395 (566)
Q Consensus 364 ~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~ 395 (566)
++|+...+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 56888899999999999999999999999865
No 358
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.96 E-value=0.00016 Score=67.69 Aligned_cols=48 Identities=29% Similarity=0.464 Sum_probs=37.1
Q ss_pred cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCC--------CCCCccEEEEcC
Q psy7366 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA--------IKPTSGNAYVMN 407 (566)
Q Consensus 359 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~--------~~~~~G~i~~~g 407 (566)
..+++++|+..+++. ++|+|++|+|||||++.+.+- ..++.+.+.++|
T Consensus 13 ~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~ 68 (198)
T 1f6b_A 13 SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAG 68 (198)
T ss_dssp CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETT
T ss_pred HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECC
Confidence 457889999888874 679999999999999999873 223445666665
No 359
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.95 E-value=6.6e-05 Score=75.67 Aligned_cols=89 Identities=12% Similarity=0.094 Sum_probs=59.9
Q ss_pred CCcchHHHHHhccccCCC-ccC-----CCCCccc---ccccceeEEcCCCC----------------CCCCCCHHHHHHH
Q psy7366 1 MGLTTTPKRVVTLLLTTQ-KVP-----GSNPTID---KNLSYIGYCPQFDA----------------LNDRLTPREHLEF 55 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~-~~~-----~~~~~~~---~~~~~ig~v~Q~~~----------------l~~~~tv~e~l~~ 55 (566)
.||||++|++.++..+.. .+. +...... .....+|||+|.|. +++.+|+ +|+.|
T Consensus 180 ~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~~~l~~~~~~-~n~~~ 258 (301)
T 1u0l_A 180 VGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEELKHYFKEFGD-KQCFF 258 (301)
T ss_dssp SSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHHGGGSTTSSS-CCCSS
T ss_pred CcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHHHHHHHhccc-ccCcC
Confidence 599999999999987654 121 2111111 11236899999986 4678888 88877
Q ss_pred HHHhcCCChhhHHHHHHHHHHHcCCC-cccccccccCCh
Q psy7366 56 YSRVRNVPSVLLNTIVNESLNKFALG-HYSDREVRTLSG 93 (566)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSg 93 (566)
.. . ....+..+++.++|+.+||. ...++++..||+
T Consensus 259 ~~-~--~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 259 SD-C--NHVDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp TT-C--CSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred CC-C--cCCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 52 1 12334557889999999996 677888888885
No 360
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.94 E-value=7.8e-07 Score=88.66 Aligned_cols=119 Identities=15% Similarity=0.062 Sum_probs=71.7
Q ss_pred CCcchHHHHHhccccCCC-ccCCCCCc---ccccccceeEEcCCC-CCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy7366 1 MGLTTTPKRVVTLLLTTQ-KVPGSNPT---IDKNLSYIGYCPQFD-ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 75 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~-~~~~~~~~---~~~~~~~ig~v~Q~~-~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l 75 (566)
.||||++|++.+.+-++. .+.+.... .....+.|++++|.+ ..++.+++.|++.+....++. ...
T Consensus 55 tGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~------~~~---- 124 (274)
T 2x8a_A 55 CGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSD------RET---- 124 (274)
T ss_dssp SCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-----------------
T ss_pred CcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCC------Ccc----
Confidence 599999999998764432 12221111 011123578888875 344555666666432211110 000
Q ss_pred HHcCCCcccccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCC------------CCCHHHHHHHHHHH
Q psy7366 76 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTS------------GMDPGARRFLWTCI 133 (566)
Q Consensus 76 ~~~gl~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~------------~LD~~~~~~l~~~l 133 (566)
. .+....++.+.+|||||+|++.|++|+..+|++| |||+. -.|..++..+++.+
T Consensus 125 ~--~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 125 G--ASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp ----CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred h--HHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 0 1233457788899999999999999999999985 99864 34666666666544
No 361
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.94 E-value=1.2e-05 Score=82.41 Aligned_cols=42 Identities=21% Similarity=0.208 Sum_probs=31.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHH
Q psy7366 495 NPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 538 (566)
Q Consensus 495 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~ 538 (566)
++.++++|| ...|++..+..+.+.+.+... ...+|+++++..
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchh
Confidence 567999999 788999988888888876533 345666776654
No 362
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.94 E-value=0.00039 Score=72.40 Aligned_cols=41 Identities=32% Similarity=0.536 Sum_probs=33.5
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHCC-----------CCCCccEEEEcCc
Q psy7366 368 GVGRGECFGLLGLNGAGKTTTFKMLTGA-----------IKPTSGNAYVMNH 408 (566)
Q Consensus 368 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G~-----------~~~~~G~i~~~g~ 408 (566)
.+..|..++|+|+||+|||||++.|+|. ..|..|.+.+.+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 3467788999999999999999999998 6678888887653
No 363
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.94 E-value=0.00032 Score=65.82 Aligned_cols=21 Identities=38% Similarity=0.545 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHC
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTG 394 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G 394 (566)
+++|+|+|||||||+.++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 364
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.90 E-value=0.00012 Score=68.73 Aligned_cols=35 Identities=17% Similarity=0.433 Sum_probs=28.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccC
Q psy7366 372 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 410 (566)
Q Consensus 372 Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~ 410 (566)
..+++|+|++||||||+.+.|++.+ |.+.+++..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence 4589999999999999999998765 4556665544
No 365
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.87 E-value=0.00084 Score=60.56 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCC
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGAIK 397 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~~~ 397 (566)
.++|+|++|+|||||++.++|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999999654
No 366
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.86 E-value=0.0021 Score=61.70 Aligned_cols=59 Identities=15% Similarity=0.057 Sum_probs=44.3
Q ss_pred CCCCEEEeeCCCCCC--CHHHHHHH-HHHHHHHHhCCCEEEEecCChhH--------HHhhcCEEEEEeC
Q psy7366 107 GNPPLIFLDEPTSGM--DPGARRFL-WTCIERAVSEGRCVILTSHNMEE--------CEALCTKLTIMVN 165 (566)
Q Consensus 107 ~~p~vLlLDEPt~~L--D~~~~~~l-~~~l~~l~~~g~tviiisH~~~~--------~~~~~d~i~vl~~ 165 (566)
.+|+++++|+|++.+ |+.....+ ..+.+.+++.|.|||+++|...+ +...||.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 65444444 44444445679999999999876 5678999999975
No 367
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.84 E-value=0.013 Score=63.12 Aligned_cols=33 Identities=18% Similarity=0.188 Sum_probs=26.1
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHC
Q psy7366 362 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 394 (566)
Q Consensus 362 l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G 394 (566)
|+.+.--+.+|+++.|.|++|+|||||.--++-
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 444433589999999999999999999766653
No 368
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.82 E-value=0.012 Score=60.78 Aligned_cols=140 Identities=16% Similarity=0.210 Sum_probs=76.7
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhc
Q psy7366 368 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVR 447 (566)
Q Consensus 368 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~ 447 (566)
-+++|+++.|.||.|+|||||...++-..... | ..+.|+.-+..+.+ + +
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~-g-----------------~~vlyi~~E~s~~~-------~-~----- 118 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKA-G-----------------GTCAFIDAEHALDP-------V-Y----- 118 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-T-----------------CCEEEEESSCCCCH-------H-H-----
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHC-C-----------------CeEEEEECCCChhH-------H-H-----
Confidence 37899999999999999999987665322111 1 13556654432110 0 0
Q ss_pred CCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHHc--CCCCEEEEeCCCCCCC---H----------HH
Q psy7366 448 NVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL--GNPPLIFLDEPTSGMD---P----------GA 512 (566)
Q Consensus 448 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~--~~p~lllLDEPt~gLD---~----------~~ 512 (566)
...+++... +-.+..-..++ +-+.+++.++ .+++++++|..++=.- . ..
T Consensus 119 --------------a~~~g~d~~-~l~i~~~~~~e-~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~ 182 (366)
T 1xp8_A 119 --------------ARALGVNTD-ELLVSQPDNGE-QALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQ 182 (366)
T ss_dssp --------------HHHTTCCGG-GCEEECCSSHH-HHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHH
T ss_pred --------------HHHcCCCHH-HceeecCCcHH-HHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHH
Confidence 111122100 00000101122 3345556555 5689999999886441 0 11
Q ss_pred HHHHHHHHHHH---HhC-CcEEEEEccCHHH----------------HHhhCCEEEEEECCE
Q psy7366 513 RRFLWTCIERA---VSE-GRCVILTSHNMEE----------------CEALCTKLTIMVNGQ 554 (566)
Q Consensus 513 ~~~l~~~l~~~---~~~-g~tvl~vsHd~~~----------------~~~~~drv~~l~~G~ 554 (566)
.+.+.+.++++ +++ +.+||+++|-... +..+||.++.|+.+.
T Consensus 183 ~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~~~~~~fg~p~~~~gg~al~~~a~~rl~L~r~~ 244 (366)
T 1xp8_A 183 ARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRKIG 244 (366)
T ss_dssp HHHHHHHHHHHHHHHTTTCCEEEEEEEC---------------CHHHHHHHCSEEEEEEEES
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEEecccccCcccCCccccCCcchhhheeeEEEEEEecc
Confidence 13345555555 344 8999999886432 356688888887544
No 369
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.81 E-value=0.0071 Score=60.46 Aligned_cols=45 Identities=22% Similarity=0.075 Sum_probs=38.4
Q ss_pred ChhHHHHHHHHHHHhCCCCEEEeeCC-CCCCCHHHHHHHHHHHHHH
Q psy7366 92 SGGNKRKLSTAIALLGNPPLIFLDEP-TSGMDPGARRFLWTCIERA 136 (566)
Q Consensus 92 SgG~kqrl~iA~al~~~p~vLlLDEP-t~~LD~~~~~~l~~~l~~l 136 (566)
+..+.+|.+|+.+...+++++|+||| +.++|......+..+.+.+
T Consensus 164 ~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 164 SPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp CHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhc
Confidence 34455788999998899999999999 9999999999988887654
No 370
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.79 E-value=0.00061 Score=62.52 Aligned_cols=22 Identities=41% Similarity=0.635 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGA 395 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~ 395 (566)
.++|+|++|+|||||++.++|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999985
No 371
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.79 E-value=0.00055 Score=64.46 Aligned_cols=29 Identities=24% Similarity=0.273 Sum_probs=26.0
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHCCCC
Q psy7366 369 VGRGECFGLLGLNGAGKTTTFKMLTGAIK 397 (566)
Q Consensus 369 i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~ 397 (566)
..+|.+++|+||+|||||||.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46889999999999999999999987664
No 372
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.76 E-value=0.0025 Score=62.90 Aligned_cols=51 Identities=20% Similarity=0.188 Sum_probs=34.1
Q ss_pred HHHcCCCCEEEEeCCCCC----------CCHHHHHHHHHHHHHHH---h-CCcEEEEEccCHHHH
Q psy7366 490 IALLGNPPLIFLDEPTSG----------MDPGARRFLWTCIERAV---S-EGRCVILTSHNMEEC 540 (566)
Q Consensus 490 ~al~~~p~lllLDEPt~g----------LD~~~~~~l~~~l~~~~---~-~g~tvl~vsHd~~~~ 540 (566)
.+....|.+|++||--.- -+...+..+..++..+. . .+..||.+|+..+.+
T Consensus 105 ~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l 169 (285)
T 3h4m_A 105 LAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDIL 169 (285)
T ss_dssp HHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGB
T ss_pred HHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhc
Confidence 344457889999997432 36667777888887763 1 256788888866443
No 373
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.71 E-value=0.0014 Score=67.31 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=23.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCCCC
Q psy7366 370 GRGECFGLLGLNGAGKTTTFKMLTGAIK 397 (566)
Q Consensus 370 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~~ 397 (566)
..+..+.|.||.|+|||||++.++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455788999999999999999987653
No 374
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.66 E-value=7.1e-07 Score=84.43 Aligned_cols=57 Identities=18% Similarity=0.173 Sum_probs=43.8
Q ss_pred HHH-HHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEecCChhHHHhhcCEEEEEeC
Q psy7366 101 TAI-ALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVN 165 (566)
Q Consensus 101 iA~-al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiisH~~~~~~~~~d~i~vl~~ 165 (566)
.|+ +++.+|.+++|||||+++|..+.+.+.+.|.++.+. +.++| +. ..+|+|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~--~~--~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSK--EP--GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGG--ST--TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhh--cc--CCceEEEECCC
Confidence 455 678889999999999999999999999988876442 34556 22 56999988763
No 375
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.63 E-value=0.0093 Score=59.94 Aligned_cols=124 Identities=10% Similarity=0.079 Sum_probs=66.4
Q ss_pred EeCCcEEEEEcCCCCcHHHHH-HHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhc
Q psy7366 369 VGRGECFGLLGLNGAGKTTTF-KMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVR 447 (566)
Q Consensus 369 i~~Ge~~~l~G~NGsGKSTLl-~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~ 447 (566)
+++| ++-|.||.|+|||||. .+++...+...| ..+.|+.-+..+.+ +
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g-----------------~~vlyId~E~s~~~-----~--------- 73 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPD-----------------AVCLFYDSEFGITP-----A--------- 73 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTT-----------------CEEEEEESSCCCCH-----H---------
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCC-----------------ceEEEEeccchhhH-----H---------
Confidence 6788 8999999999999994 554443321001 12455544332211 0
Q ss_pred CCCchHHHHHHHHHHHHcCCCCccccCcCcCChhHHHHHHHHHHH--c--CCCCEEEEeCCCCCCC-------H------
Q psy7366 448 NVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIAL--L--GNPPLIFLDEPTSGMD-------P------ 510 (566)
Q Consensus 448 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al--~--~~p~lllLDEPt~gLD-------~------ 510 (566)
.++++|++.. +-.+..=.-++++.+.++.++ + .+|+++++|--++-.- +
T Consensus 74 -------------ra~~lGvd~d-~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~g 139 (333)
T 3io5_A 74 -------------YLRSMGVDPE-RVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVS 139 (333)
T ss_dssp -------------HHHHTTCCGG-GEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC-------------
T ss_pred -------------HHHHhCCCHH-HeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCcccccccc
Confidence 0223333210 011112224566656666666 3 4699999997766531 1
Q ss_pred --HHHHHHHHHHHH---H-HhCCcEEEEEccCHH
Q psy7366 511 --GARRFLWTCIER---A-VSEGRCVILTSHNME 538 (566)
Q Consensus 511 --~~~~~l~~~l~~---~-~~~g~tvl~vsHd~~ 538 (566)
...+.+-+.|++ + .+.+.++|++-|-..
T Consensus 140 sv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~k 173 (333)
T 3io5_A 140 DMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTYE 173 (333)
T ss_dssp -CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCEEEEECCeee
Confidence 122233344433 3 356999999999865
No 376
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.59 E-value=0.0011 Score=61.07 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCC
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGAIKP 398 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~~~~ 398 (566)
.++|+|++|+|||||++.++|...+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~ 28 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKS 28 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc
Confidence 4789999999999999999997544
No 377
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.58 E-value=0.00069 Score=62.43 Aligned_cols=36 Identities=28% Similarity=0.339 Sum_probs=28.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHCCCCCC---ccEEEEcCc
Q psy7366 373 ECFGLLGLNGAGKTTTFKMLTGAIKPT---SGNAYVMNH 408 (566)
Q Consensus 373 e~~~l~G~NGsGKSTLl~~i~G~~~~~---~G~i~~~g~ 408 (566)
.+++|+|++|||||||++.|.+.+++. -|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 588999999999999999999876543 366666554
No 378
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.58 E-value=0.0041 Score=75.50 Aligned_cols=75 Identities=13% Similarity=0.059 Sum_probs=49.2
Q ss_pred HHHHHHHHh--CCCCEEEeeCCCCCCCHH-------------HHHHHHHHHHHH----HhCCCEEEEecCChh-------
Q psy7366 98 KLSTAIALL--GNPPLIFLDEPTSGMDPG-------------ARRFLWTCIERA----VSEGRCVILTSHNME------- 151 (566)
Q Consensus 98 rl~iA~al~--~~p~vLlLDEPt~~LD~~-------------~~~~l~~~l~~l----~~~g~tviiisH~~~------- 151 (566)
-+.+++.++ .+|+++++|..++-.... ..+.+.+.+++| ++.|.+||+++|-..
T Consensus 449 ~l~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg 528 (1706)
T 3cmw_A 449 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG 528 (1706)
T ss_dssp HHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSS
T ss_pred HHHHHHHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccC
Confidence 344555554 689999999988876421 223444555554 456999999988532
Q ss_pred ---------HHHhhcCEEEEEeCCEEEEec
Q psy7366 152 ---------ECEALCTKLTIMVNGQFTCLG 172 (566)
Q Consensus 152 ---------~~~~~~d~i~vl~~G~i~~~g 172 (566)
.+...||-++.++....+..|
T Consensus 529 ~~~~p~gg~ale~~ADv~L~L~R~~~~~~g 558 (1706)
T 3cmw_A 529 NPETTTGGNALKFYASVRLDIRRIGAVKEG 558 (1706)
T ss_dssp CCEEESSCSHHHHHEEEEEEEEEEEEEEET
T ss_pred CCccCCCCcceeeeCCEEEEEEeccccccC
Confidence 356678988888876654433
No 379
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.57 E-value=0.00026 Score=72.45 Aligned_cols=36 Identities=22% Similarity=0.244 Sum_probs=32.3
Q ss_pred eeeeeeEEEeCCcE--EEEEcCCCCcHHHHHHHHHCCC
Q psy7366 361 AVNQISFGVGRGEC--FGLLGLNGAGKTTTFKMLTGAI 396 (566)
Q Consensus 361 ~l~~isl~i~~Ge~--~~l~G~NGsGKSTLl~~i~G~~ 396 (566)
+++.+++.+.+|++ ++|+|++||||||+.++|++.+
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 67778888889988 9999999999999999999864
No 380
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.53 E-value=0.003 Score=60.47 Aligned_cols=52 Identities=17% Similarity=0.232 Sum_probs=38.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccC----------HHHHHhhCCEEEEEE
Q psy7366 495 NPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN----------MEECEALCTKLTIMV 551 (566)
Q Consensus 495 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd----------~~~~~~~~drv~~l~ 551 (566)
+++++++||--. |+.. +.+.+..+++.|..||++-|+ ...+..+||+|.-|+
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999954 6654 334556666669999999993 456667999998864
No 381
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.50 E-value=0.0012 Score=60.82 Aligned_cols=25 Identities=36% Similarity=0.425 Sum_probs=22.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHC
Q psy7366 370 GRGECFGLLGLNGAGKTTTFKMLTG 394 (566)
Q Consensus 370 ~~Ge~~~l~G~NGsGKSTLl~~i~G 394 (566)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999999984
No 382
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.49 E-value=0.00023 Score=71.68 Aligned_cols=96 Identities=13% Similarity=0.134 Sum_probs=56.2
Q ss_pred CCcchHHHHHhccccCCC-ccC-----CCCCccc-c-cccceeEEcCCCCCCC----CCCHHHHHH-HHHHh--------
Q psy7366 1 MGLTTTPKRVVTLLLTTQ-KVP-----GSNPTID-K-NLSYIGYCPQFDALND----RLTPREHLE-FYSRV-------- 59 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~-~~~-----~~~~~~~-~-~~~~ig~v~Q~~~l~~----~~tv~e~l~-~~~~~-------- 59 (566)
+||||++|++++...+.. .+. |...... . ....+||++|.|.+.. .+|+ |++. ++.+.
T Consensus 184 ~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~l~~~f~~~~~~~~~C~ 262 (307)
T 1t9h_A 184 VGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EELGYTFPDIREKSSSCK 262 (307)
T ss_dssp HHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HHHGGGSHHHHHHGGGCS
T ss_pred CCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HHHHHHHHHHHHHhhhcc
Confidence 489999999999875433 121 1111111 1 1112799999998765 6789 8883 12211
Q ss_pred -cC-CChhhHHHHHHHHHHHcCCCcccccccccCChhHHH
Q psy7366 60 -RN-VPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKR 97 (566)
Q Consensus 60 -~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~kq 97 (566)
.+ ....+...++.++++.++|.....+.+..|+.|++|
T Consensus 263 f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~ 302 (307)
T 1t9h_A 263 FRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKD 302 (307)
T ss_dssp STTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHT
T ss_pred ccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhh
Confidence 11 223344567899999999987666667777778876
No 383
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.49 E-value=0.0019 Score=61.14 Aligned_cols=44 Identities=16% Similarity=0.224 Sum_probs=31.4
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCHHH
Q psy7366 494 GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEE 539 (566)
Q Consensus 494 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~ 539 (566)
.+|.+|++||.-. +|+.....+.+.+.+. ..+..+|++|++...
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~~ 168 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQK 168 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChHh
Confidence 4678999999765 7888777776666432 235678888887653
No 384
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.45 E-value=0.0013 Score=63.48 Aligned_cols=35 Identities=17% Similarity=0.158 Sum_probs=27.4
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHC---CCCCCccEE
Q psy7366 369 VGRGECFGLLGLNGAGKTTTFKMLTG---AIKPTSGNA 403 (566)
Q Consensus 369 i~~Ge~~~l~G~NGsGKSTLl~~i~G---~~~~~~G~i 403 (566)
-.+|.+++|+|++||||||+.++|++ ...++.|.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~ 50 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAM 50 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCe
Confidence 46788999999999999999999986 333445544
No 385
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.42 E-value=0.0011 Score=64.73 Aligned_cols=45 Identities=20% Similarity=0.280 Sum_probs=29.6
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccC
Q psy7366 362 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 410 (566)
Q Consensus 362 l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~ 410 (566)
++++++.+++| +.|.||+|+|||||.++|++..... -+.+++.++
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~~ 81 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDF 81 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSS
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHHH
Confidence 34444445555 7899999999999999999876432 356665544
No 386
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.38 E-value=0.001 Score=64.96 Aligned_cols=41 Identities=22% Similarity=0.223 Sum_probs=33.1
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccC
Q psy7366 368 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 410 (566)
Q Consensus 368 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~ 410 (566)
...++.++.|+|++||||||+.+.|+..+. .+.+.+++..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 346778999999999999999999998764 35677777654
No 387
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.27 E-value=0.017 Score=55.37 Aligned_cols=60 Identities=17% Similarity=0.114 Sum_probs=39.1
Q ss_pred HcCCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHHhC-CcEEEEEccCHHH----------HHhhCCEEEEEE
Q psy7366 492 LLGNPPLIFLDEPTS----GMDPGARRFLWTCIERAVSE-GRCVILTSHNMEE----------CEALCTKLTIMV 551 (566)
Q Consensus 492 l~~~p~lllLDEPt~----gLD~~~~~~l~~~l~~~~~~-g~tvl~vsHd~~~----------~~~~~drv~~l~ 551 (566)
-..+|+++++|--+. .-|......+...|..++++ +.++++++|-... ...+||-|+.|+
T Consensus 132 ~~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 132 KAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred HhcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 456889999995432 11344455566666666655 9999999985322 345789988875
No 388
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.26 E-value=0.0028 Score=65.16 Aligned_cols=67 Identities=15% Similarity=0.221 Sum_probs=51.5
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCEEEee-CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEec--CChhHH
Q psy7366 85 DREVRTLSGGNKRKLSTAIALLGNPPLIFLD-EPTSGMDPGARRFLWTCIERAVSEGRCVILTS--HNMEEC 153 (566)
Q Consensus 85 ~~~~~~LSgG~kqrl~iA~al~~~p~vLlLD-EPt~~LD~~~~~~l~~~l~~l~~~g~tviiis--H~~~~~ 153 (566)
+.+..++|++++|.+. +.+...++-++++| +|++++|......+.+.+..+.. +..+|++. ||+...
T Consensus 226 ~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~ 295 (357)
T 2e87_A 226 DRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADE 295 (357)
T ss_dssp SSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCH
T ss_pred ccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCCh
Confidence 3466789999998776 55556788889999 99999999988877777766533 77788877 887543
No 389
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.21 E-value=0.0062 Score=62.05 Aligned_cols=56 Identities=13% Similarity=0.105 Sum_probs=45.1
Q ss_pred ccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEecCC
Q psy7366 89 RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS-E-GRCVILTSHN 149 (566)
Q Consensus 89 ~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~-~-g~tviiisH~ 149 (566)
+.||.++.+|+..|...+.+++++|.|+|... ..+|...++++++ . |..+|||.|-
T Consensus 108 g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l~~~~gg~~lIVIDyL 165 (338)
T 4a1f_A 108 GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKLKSQHKELGIAFIDYL 165 (338)
T ss_dssp TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHHHHHCTTEEEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHHHHhcCCCCEEEEech
Confidence 47999999999999999999999999998654 4466777777754 4 6788888753
No 390
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.19 E-value=0.0015 Score=68.02 Aligned_cols=60 Identities=22% Similarity=0.225 Sum_probs=47.5
Q ss_pred CCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCcEEEEEccCHHHHH------------hhCCEEEEEECC
Q psy7366 494 GNPPLIFLDEPTSGMD---PGARRFLWTCIERAVSEGRCVILTSHNMEECE------------ALCTKLTIMVNG 553 (566)
Q Consensus 494 ~~p~lllLDEPt~gLD---~~~~~~l~~~l~~~~~~g~tvl~vsHd~~~~~------------~~~drv~~l~~G 553 (566)
..|.++++||--.-++ +.....+.+.+++.++.|..++++||++..+. .-|+..+++...
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~~ 335 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQG 335 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSCC
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCCC
Confidence 3578999999988884 77788888888888888999999999997653 336666666543
No 391
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.17 E-value=0.0016 Score=62.94 Aligned_cols=32 Identities=25% Similarity=0.317 Sum_probs=25.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHH---CCCCCCccEE
Q psy7366 372 GECFGLLGLNGAGKTTTFKMLT---GAIKPTSGNA 403 (566)
Q Consensus 372 Ge~~~l~G~NGsGKSTLl~~i~---G~~~~~~G~i 403 (566)
.-+++|.||+||||||+.+.|+ |+...+.|.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~ 43 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAM 43 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcH
Confidence 4589999999999999999998 5544455544
No 392
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.17 E-value=0.02 Score=50.47 Aligned_cols=43 Identities=12% Similarity=0.086 Sum_probs=28.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcc-CHHH
Q psy7366 495 NPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH-NMEE 539 (566)
Q Consensus 495 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsH-d~~~ 539 (566)
+..+|++||. ..|++..+..+.+.|... .....+|++|. +++.
T Consensus 76 ~~g~l~ldei-~~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~~~~ 119 (145)
T 3n70_A 76 QGGTLVLSHP-EHLTREQQYHLVQLQSQE-HRPFRLIGIGDTSLVE 119 (145)
T ss_dssp TTSCEEEECG-GGSCHHHHHHHHHHHHSS-SCSSCEEEEESSCHHH
T ss_pred CCcEEEEcCh-HHCCHHHHHHHHHHHhhc-CCCEEEEEECCcCHHH
Confidence 4468999998 468888888888887332 22445555554 4443
No 393
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.13 E-value=0.0027 Score=57.36 Aligned_cols=23 Identities=22% Similarity=0.093 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGAI 396 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~~ 396 (566)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
No 394
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.03 E-value=0.0036 Score=56.98 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHCCCC
Q psy7366 372 GECFGLLGLNGAGKTTTFKMLTGAIK 397 (566)
Q Consensus 372 Ge~~~l~G~NGsGKSTLl~~i~G~~~ 397 (566)
|.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999997654
No 395
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.02 E-value=0.013 Score=59.02 Aligned_cols=28 Identities=18% Similarity=0.017 Sum_probs=25.0
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHHC
Q psy7366 367 FGVGRGECFGLLGLNGAGKTTTFKMLTG 394 (566)
Q Consensus 367 l~i~~Ge~~~l~G~NGsGKSTLl~~i~G 394 (566)
--+.+|.++.|.||.|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3578899999999999999999998874
No 396
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.99 E-value=0.013 Score=62.02 Aligned_cols=34 Identities=15% Similarity=0.198 Sum_probs=27.3
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHC
Q psy7366 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 394 (566)
Q Consensus 361 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G 394 (566)
-|+.+.--+.+|+++.|.|+.|+|||||.--++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 3554443589999999999999999999876654
No 397
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.97 E-value=0.0046 Score=63.62 Aligned_cols=36 Identities=36% Similarity=0.590 Sum_probs=29.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHC-----------CCCCCccEEEEcC
Q psy7366 372 GECFGLLGLNGAGKTTTFKMLTG-----------AIKPTSGNAYVMN 407 (566)
Q Consensus 372 Ge~~~l~G~NGsGKSTLl~~i~G-----------~~~~~~G~i~~~g 407 (566)
|-.++|+|.+|+|||||++.|+| ...|..|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999998 3457778877765
No 398
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.93 E-value=0.0041 Score=57.16 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366 372 GECFGLLGLNGAGKTTTFKMLTGAI 396 (566)
Q Consensus 372 Ge~~~l~G~NGsGKSTLl~~i~G~~ 396 (566)
|.++.|.|+.||||||+.+.|+-.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6689999999999999999998643
No 399
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.92 E-value=0.0067 Score=62.36 Aligned_cols=51 Identities=14% Similarity=0.044 Sum_probs=40.6
Q ss_pred CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEecCChhHHHhhcC
Q psy7366 107 GNPPLIFLDEPTSGMDPGARRFLWTCIERAVS---EGRCVILTSHNMEECEALCT 158 (566)
Q Consensus 107 ~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tviiisH~~~~~~~~~d 158 (566)
.+|.||+|||+... |+.....|..++.++.. .+.++|+++|+.+....+.+
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~ 177 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDP 177 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCH
Confidence 56889999999876 99999898888877655 57899999999875555433
No 400
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.91 E-value=0.021 Score=58.51 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366 371 RGECFGLLGLNGAGKTTTFKMLTGAI 396 (566)
Q Consensus 371 ~Ge~~~l~G~NGsGKSTLl~~i~G~~ 396 (566)
+..-+.|.||.|+|||||.++|+...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 34567899999999999999998754
No 401
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.89 E-value=0.026 Score=54.55 Aligned_cols=26 Identities=31% Similarity=0.230 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366 371 RGECFGLLGLNGAGKTTTFKMLTGAI 396 (566)
Q Consensus 371 ~Ge~~~l~G~NGsGKSTLl~~i~G~~ 396 (566)
...-+.|.||.|+|||||.+.++...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34457799999999999999998743
No 402
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.88 E-value=0.043 Score=66.74 Aligned_cols=67 Identities=10% Similarity=0.017 Sum_probs=44.2
Q ss_pred HHHHHHHh--CCCCEEEeeCCCCCCCHH-----------------HHHHHHHHHHHHHhCCCEEEEecCChh--------
Q psy7366 99 LSTAIALL--GNPPLIFLDEPTSGMDPG-----------------ARRFLWTCIERAVSEGRCVILTSHNME-------- 151 (566)
Q Consensus 99 l~iA~al~--~~p~vLlLDEPt~~LD~~-----------------~~~~l~~~l~~l~~~g~tviiisH~~~-------- 151 (566)
..+...+. .+|+++|+|+-+.-.-.. .++.+..+...+++.+.+||++.|..+
T Consensus 101 ~~ll~~L~~~~~~~LVVIDSLt~L~~~~e~e~~~~~~~~~~~~r~~~~ll~~L~~~ake~~~tVIvTNqv~s~~g~~fgd 180 (1706)
T 3cmw_A 101 LEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGN 180 (1706)
T ss_dssp HHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSC
T ss_pred HHHHHHHHhccCCCEEEEcchhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCc
Confidence 34444553 579999999988766543 123444444445566889888877532
Q ss_pred --------HHHhhcCEEEEEeC
Q psy7366 152 --------ECEALCTKLTIMVN 165 (566)
Q Consensus 152 --------~~~~~~d~i~vl~~ 165 (566)
.+..+||-++.|+.
T Consensus 181 ~~~a~~g~~l~h~ad~~I~L~r 202 (1706)
T 3cmw_A 181 PETTTGGNALKFYASVRLDIRR 202 (1706)
T ss_dssp CEEESSCSHHHHHEEEEEEEEE
T ss_pred cccccCcchhhhhCCEEEEEEe
Confidence 45567888999875
No 403
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.84 E-value=0.0046 Score=58.48 Aligned_cols=24 Identities=25% Similarity=0.248 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHC
Q psy7366 371 RGECFGLLGLNGAGKTTTFKMLTG 394 (566)
Q Consensus 371 ~Ge~~~l~G~NGsGKSTLl~~i~G 394 (566)
++-+++|+|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999997
No 404
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.82 E-value=0.0042 Score=57.24 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=23.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366 370 GRGECFGLLGLNGAGKTTTFKMLTGAI 396 (566)
Q Consensus 370 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~ 396 (566)
.++.++.|+|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 457789999999999999999997543
No 405
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.82 E-value=0.0012 Score=62.15 Aligned_cols=30 Identities=30% Similarity=0.554 Sum_probs=24.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCCCccEE
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGAIKPTSGNA 403 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i 403 (566)
+++|.|++||||||+++.|+..+.+....+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v 31 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSV 31 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 689999999999999999998776433344
No 406
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.80 E-value=0.0045 Score=55.68 Aligned_cols=19 Identities=32% Similarity=0.544 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q psy7366 374 CFGLLGLNGAGKTTTFKML 392 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i 392 (566)
+++|.||.||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 407
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.79 E-value=0.056 Score=56.92 Aligned_cols=28 Identities=29% Similarity=0.463 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHCCCCC
Q psy7366 371 RGECFGLLGLNGAGKTTTFKMLTGAIKP 398 (566)
Q Consensus 371 ~Ge~~~l~G~NGsGKSTLl~~i~G~~~~ 398 (566)
++.+++++|++|+||||++..|+..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 5679999999999999999999876654
No 408
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.79 E-value=0.0032 Score=71.53 Aligned_cols=76 Identities=12% Similarity=0.110 Sum_probs=60.7
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCEEEeeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEE-ecCChhHHHhhcCEE
Q psy7366 85 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTS-GMDPGARRFLWTCIERAVSEGRCVIL-TSHNMEECEALCTKL 160 (566)
Q Consensus 85 ~~~~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~-~LD~~~~~~l~~~l~~l~~~g~tvii-isH~~~~~~~~~d~i 160 (566)
+..+.-+|+|+.+|..++.+++.+++++|+|||.. +||......+...+........+|++ +||+.+.+.++++..
T Consensus 185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~~ 262 (773)
T 2xau_A 185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDA 262 (773)
T ss_dssp TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTSC
T ss_pred CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcCC
Confidence 44577789999999999999999999999999997 99987766666655554444567777 599998888877643
No 409
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.76 E-value=0.0046 Score=57.50 Aligned_cols=33 Identities=24% Similarity=0.288 Sum_probs=26.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCcc
Q psy7366 372 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 409 (566)
Q Consensus 372 Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~ 409 (566)
..+++|+|++||||||+.+.|+.. |-..++...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d~ 40 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDLDA 40 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcccH
Confidence 357999999999999999999975 656665543
No 410
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.75 E-value=0.013 Score=62.56 Aligned_cols=76 Identities=20% Similarity=0.241 Sum_probs=61.4
Q ss_pred ccccCcCcCChhHHHHHHHHHHHc--C---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEE
Q psy7366 470 YSDREVRTLSGGNKRKLSTAIALL--G---------------NPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL 532 (566)
Q Consensus 470 ~~~~~~~~LSgGqkqrv~la~al~--~---------------~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~ 532 (566)
..++..+.+||||+|...+|++.+ . .-.+++|||. +-+|....+..+++++++ |.-+|+
T Consensus 372 ~~s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQlii 447 (483)
T 3euj_A 372 WMRAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLI 447 (483)
T ss_dssp EEECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEE
T ss_pred eeecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEE
Confidence 345678899999999766655533 1 2268999999 999999999999999987 888999
Q ss_pred EccCHHHHHhhCCEEEEEE
Q psy7366 533 TSHNMEECEALCTKLTIMV 551 (566)
Q Consensus 533 vsHd~~~~~~~~drv~~l~ 551 (566)
++-+ .+..++|.++.+-
T Consensus 448 atP~--~i~p~v~~~~~~~ 464 (483)
T 3euj_A 448 AAPE--NISPERGTTYKLV 464 (483)
T ss_dssp EESS--SCCCSSSEEEECC
T ss_pred ECcc--hhhhccCceEEEE
Confidence 9988 6667788888764
No 411
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.71 E-value=0.0044 Score=60.51 Aligned_cols=23 Identities=17% Similarity=0.130 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGAI 396 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~~ 396 (566)
+++|+||+|||||||.+.|++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998754
No 412
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.70 E-value=0.0045 Score=56.41 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGAI 396 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~~ 396 (566)
+++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998654
No 413
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.68 E-value=0.0055 Score=56.90 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGAI 396 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~~ 396 (566)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999743
No 414
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.66 E-value=0.0053 Score=57.07 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHCCC
Q psy7366 375 FGLLGLNGAGKTTTFKMLTGAI 396 (566)
Q Consensus 375 ~~l~G~NGsGKSTLl~~i~G~~ 396 (566)
+.|+||+|||||||++.|....
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999987543
No 415
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.65 E-value=0.022 Score=70.09 Aligned_cols=138 Identities=14% Similarity=0.136 Sum_probs=78.4
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcCccCCCchHHhcCceEEEecCCCCCCCCCHHHHHHHHHHhcC
Q psy7366 369 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRN 448 (566)
Q Consensus 369 i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~ 448 (566)
+++|+++.|.||+|+|||||...++.......+ .+.|+.-+..+.+ + + .
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~------------------~vlyis~E~s~~~---~-----~-a---- 428 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK------------------TCAFIDAEHALDP---I-----Y-A---- 428 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTC------------------CEEEECTTSCCCH---H-----H-H----
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCC------------------eEEEEEcCCCHHH---H-----H-H----
Confidence 899999999999999999998777643322111 2444443322110 0 0 0
Q ss_pred CCchHHHHHHHHHHHHcCCC--CccccCcCcCChhHHHHHHHHHHHc--CCCCEEEEeCCCCCCC-H------------H
Q psy7366 449 VPSVLLNTIVNESLNKFALG--HYSDREVRTLSGGNKRKLSTAIALL--GNPPLIFLDEPTSGMD-P------------G 511 (566)
Q Consensus 449 ~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGqkqrv~la~al~--~~p~lllLDEPt~gLD-~------------~ 511 (566)
+.++++ ... .....+. .+-+.+++.++ .+|+++++|.-++-.. . .
T Consensus 429 --------------~~lGvd~~~L~--I~~~~~~--e~il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~ 490 (2050)
T 3cmu_A 429 --------------RKLGVDIDNLL--CSQPDTG--EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGL 490 (2050)
T ss_dssp --------------HHTTCCTTTCE--EECCSSH--HHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTH
T ss_pred --------------HHcCCCHHHeE--EeCCCCH--HHHHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhH
Confidence 111211 100 0011122 22344555553 5799999998876542 1 1
Q ss_pred HHHHHHHHHHHH---Hh-CCcEEEEEccCHH----------------HHHhhCCEEEEEECCEE
Q psy7366 512 ARRFLWTCIERA---VS-EGRCVILTSHNME----------------ECEALCTKLTIMVNGQF 555 (566)
Q Consensus 512 ~~~~l~~~l~~~---~~-~g~tvl~vsHd~~----------------~~~~~~drv~~l~~G~i 555 (566)
..+.+.+.++.+ ++ .+++||+++|-.. -+..+||-++.|+....
T Consensus 491 q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g~p~~psGg~ale~~ADv~l~L~R~~~ 554 (2050)
T 3cmu_A 491 AARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGA 554 (2050)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSSCCEECSSHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccCCCcCCCCcchhhhhCCEEEEEEeccc
Confidence 123344555555 34 4999999988432 35678899999876553
No 416
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.64 E-value=0.021 Score=50.30 Aligned_cols=40 Identities=10% Similarity=0.050 Sum_probs=28.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcc
Q psy7366 495 NPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 535 (566)
Q Consensus 495 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsH 535 (566)
+..+|++||.- .|++..+..+.+.+.+....+..+|++|.
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn 114 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCS 114 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 45789999964 67888888888888765333566666665
No 417
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.63 E-value=0.01 Score=54.44 Aligned_cols=36 Identities=25% Similarity=0.383 Sum_probs=25.7
Q ss_pred EEEEEcCCCCcHHHHHHHHH-CC----CCCCcc----EEEEcCcc
Q psy7366 374 CFGLLGLNGAGKTTTFKMLT-GA----IKPTSG----NAYVMNHS 409 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~-G~----~~~~~G----~i~~~g~~ 409 (566)
.++|+|+.|+|||||++.+. +. +.|+.| .+.++|..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence 57899999999999996554 44 456655 45555543
No 418
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.57 E-value=0.0069 Score=56.34 Aligned_cols=26 Identities=35% Similarity=0.468 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366 371 RGECFGLLGLNGAGKTTTFKMLTGAI 396 (566)
Q Consensus 371 ~Ge~~~l~G~NGsGKSTLl~~i~G~~ 396 (566)
+|-+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999999876
No 419
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.55 E-value=0.006 Score=55.77 Aligned_cols=25 Identities=36% Similarity=0.169 Sum_probs=22.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHC
Q psy7366 370 GRGECFGLLGLNGAGKTTTFKMLTG 394 (566)
Q Consensus 370 ~~Ge~~~l~G~NGsGKSTLl~~i~G 394 (566)
.++.++.|+|++||||||+.+.|+-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 4577899999999999999999983
No 420
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.51 E-value=0.0073 Score=55.35 Aligned_cols=26 Identities=35% Similarity=0.317 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366 371 RGECFGLLGLNGAGKTTTFKMLTGAI 396 (566)
Q Consensus 371 ~Ge~~~l~G~NGsGKSTLl~~i~G~~ 396 (566)
.+.++.|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 35688999999999999999997543
No 421
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.51 E-value=0.007 Score=54.94 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHC
Q psy7366 373 ECFGLLGLNGAGKTTTFKMLTG 394 (566)
Q Consensus 373 e~~~l~G~NGsGKSTLl~~i~G 394 (566)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999999986
No 422
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.48 E-value=0.0038 Score=57.03 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHCCCCC
Q psy7366 373 ECFGLLGLNGAGKTTTFKMLTGAIKP 398 (566)
Q Consensus 373 e~~~l~G~NGsGKSTLl~~i~G~~~~ 398 (566)
.+++|+|++|||||||++.|+..++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 37899999999999999999887653
No 423
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.45 E-value=0.008 Score=56.14 Aligned_cols=28 Identities=25% Similarity=0.510 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHCCCCC
Q psy7366 371 RGECFGLLGLNGAGKTTTFKMLTGAIKP 398 (566)
Q Consensus 371 ~Ge~~~l~G~NGsGKSTLl~~i~G~~~~ 398 (566)
+|-+++|.|+.||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999875543
No 424
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.41 E-value=0.0083 Score=56.16 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=23.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCC
Q psy7366 370 GRGECFGLLGLNGAGKTTTFKMLTGA 395 (566)
Q Consensus 370 ~~Ge~~~l~G~NGsGKSTLl~~i~G~ 395 (566)
.+|-+++|.|+.||||||+.+.|+..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999853
No 425
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.40 E-value=0.0084 Score=55.32 Aligned_cols=27 Identities=19% Similarity=0.244 Sum_probs=23.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366 370 GRGECFGLLGLNGAGKTTTFKMLTGAI 396 (566)
Q Consensus 370 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~ 396 (566)
.++-+++|+|+.||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999998543
No 426
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.36 E-value=0.0075 Score=60.04 Aligned_cols=36 Identities=22% Similarity=0.204 Sum_probs=28.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEEEcC
Q psy7366 370 GRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 407 (566)
Q Consensus 370 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~~~g 407 (566)
.+|.++.|.||+||||||+.+.|+..++ .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 4567899999999999999999986543 35566665
No 427
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.36 E-value=0.0088 Score=54.97 Aligned_cols=24 Identities=29% Similarity=0.231 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHCC
Q psy7366 372 GECFGLLGLNGAGKTTTFKMLTGA 395 (566)
Q Consensus 372 Ge~~~l~G~NGsGKSTLl~~i~G~ 395 (566)
+.+++|+|+.||||||+.+.|+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999998743
No 428
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.30 E-value=0.0092 Score=55.92 Aligned_cols=26 Identities=38% Similarity=0.483 Sum_probs=23.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCC
Q psy7366 370 GRGECFGLLGLNGAGKTTTFKMLTGA 395 (566)
Q Consensus 370 ~~Ge~~~l~G~NGsGKSTLl~~i~G~ 395 (566)
.+|-+++|+|+.||||||+.+.|+-.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 56889999999999999999999853
No 429
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.20 E-value=0.0077 Score=54.95 Aligned_cols=26 Identities=31% Similarity=0.328 Sum_probs=18.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366 371 RGECFGLLGLNGAGKTTTFKMLTGAI 396 (566)
Q Consensus 371 ~Ge~~~l~G~NGsGKSTLl~~i~G~~ 396 (566)
++.++.|.|+.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 56789999999999999999998543
No 430
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.20 E-value=0.00056 Score=75.67 Aligned_cols=47 Identities=13% Similarity=0.244 Sum_probs=40.5
Q ss_pred cccCChhHHHHHHHHHHHhCCCCEEEeeCCCCCCCHHHHHHHHHHHHH
Q psy7366 88 VRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 135 (566)
Q Consensus 88 ~~~LSgG~kqrl~iA~al~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~ 135 (566)
...+|+|++|++..+.....++.+|+|||... |++.....|.++|.+
T Consensus 181 ~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 181 SGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp ---CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred cCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 36799999999999999999999999999988 899999999888874
No 431
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.16 E-value=0.029 Score=52.21 Aligned_cols=52 Identities=21% Similarity=0.268 Sum_probs=38.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCH----------HHHHhhCCEEEEEE
Q psy7366 495 NPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM----------EECEALCTKLTIMV 551 (566)
Q Consensus 495 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd~----------~~~~~~~drv~~l~ 551 (566)
+.+++++||--- +|+.. .+.++++...|+.||++.+|. ..+..+||.|.-|+
T Consensus 81 ~~dvViIDEaqf-l~~~~----v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDEI----VEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTHH----HHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHHH----HHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 579999999543 66543 345666666799999999864 66778899997664
No 432
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.14 E-value=0.01 Score=54.36 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCC
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGAIK 397 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~~~ 397 (566)
++.|.|+.||||||+.+.|+..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999986543
No 433
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.13 E-value=0.011 Score=55.20 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGAI 396 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~~ 396 (566)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998743
No 434
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.10 E-value=0.011 Score=54.56 Aligned_cols=23 Identities=26% Similarity=0.593 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGAI 396 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~~ 396 (566)
+++|.|+.||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998654
No 435
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.07 E-value=0.0045 Score=57.37 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=24.0
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366 369 VGRGECFGLLGLNGAGKTTTFKMLTGAI 396 (566)
Q Consensus 369 i~~Ge~~~l~G~NGsGKSTLl~~i~G~~ 396 (566)
+.++-+++|+|+.||||||+.+.|+..+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567799999999999999999998643
No 436
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.04 E-value=0.012 Score=58.14 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGAI 396 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~~ 396 (566)
.++|+|++|+|||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
No 437
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.03 E-value=0.0058 Score=55.20 Aligned_cols=51 Identities=27% Similarity=0.268 Sum_probs=34.8
Q ss_pred CCcchHHHHHhccccCCC-cc--CCCCCcccccccceeEEcCCCCCCCCCCHHHHHHH
Q psy7366 1 MGLTTTPKRVVTLLLTTQ-KV--PGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEF 55 (566)
Q Consensus 1 ~Gktt~~k~~~~~~~~~~-~~--~~~~~~~~~~~~~ig~v~Q~~~l~~~~tv~e~l~~ 55 (566)
.||||++|++++++ +.+ .+ ++.... .... .-.+++|++.++ .+||.||+.+
T Consensus 44 aGKTTLlr~l~g~l-~~~G~V~~~g~~i~-~~~~-~~~~~~q~~~l~-~ltv~e~l~~ 97 (158)
T 1htw_A 44 AGKTTLTRGMLQGI-GHQGNVKSPTYTLV-EEYN-IAGKMIYHFDLY-RLADPEELEF 97 (158)
T ss_dssp SSHHHHHHHHHHHT-TCCSCCCCCTTTCE-EEEE-ETTEEEEEEECT-TCSCTTHHHH
T ss_pred CCHHHHHHHHHHhC-CCCCeEEECCEeee-eecc-CCCcceeccccc-cCCcHHHHHH
Confidence 59999999999998 654 22 222211 1111 113799999988 8999999965
No 438
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=94.97 E-value=0.0051 Score=63.43 Aligned_cols=64 Identities=16% Similarity=0.102 Sum_probs=48.7
Q ss_pred HHHHHHHHcCCCccc----ccccccCChhHHHHHHHH----HHH-hCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHH
Q psy7366 70 IVNESLNKFALGHYS----DREVRTLSGGNKRKLSTA----IAL-LGNPPLIFLDEPTSGMDPGARRFLWTCIERAV 137 (566)
Q Consensus 70 ~~~~~l~~~gl~~~~----~~~~~~LSgG~kqrl~iA----~al-~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~ 137 (566)
.+.++++.+++.... ..++..+|+++++++.++ +++ ..+|++ +|+|++|..+.+.|++.|.++.
T Consensus 280 ~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 280 SSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp HHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHh
Confidence 456778888765433 556788899988888877 555 444554 8999999999999999998753
No 439
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.91 E-value=0.012 Score=54.05 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGAI 396 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~~ 396 (566)
.++|+|+.|+|||||++.+.+..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999999865
No 440
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.90 E-value=0.012 Score=53.69 Aligned_cols=23 Identities=48% Similarity=0.535 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGAI 396 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~~ 396 (566)
.++|+|++|+|||||++.+.+..
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~~ 40 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASED 40 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999863
No 441
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.82 E-value=0.016 Score=54.83 Aligned_cols=26 Identities=31% Similarity=0.298 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366 371 RGECFGLLGLNGAGKTTTFKMLTGAI 396 (566)
Q Consensus 371 ~Ge~~~l~G~NGsGKSTLl~~i~G~~ 396 (566)
+|-+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46689999999999999999998643
No 442
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.81 E-value=0.015 Score=55.35 Aligned_cols=27 Identities=26% Similarity=0.239 Sum_probs=22.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366 370 GRGECFGLLGLNGAGKTTTFKMLTGAI 396 (566)
Q Consensus 370 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~ 396 (566)
.++.+++|+|+.||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998533
No 443
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.80 E-value=0.14 Score=53.53 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=23.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCC
Q psy7366 370 GRGECFGLLGLNGAGKTTTFKMLTGA 395 (566)
Q Consensus 370 ~~Ge~~~l~G~NGsGKSTLl~~i~G~ 395 (566)
.+..++.|+|++||||||+.+.|+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 56789999999999999999999753
No 444
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.76 E-value=0.014 Score=51.84 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCC
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGAIK 397 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~~~ 397 (566)
.++|+|+.|+|||||++.+.|...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 478999999999999999988653
No 445
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.73 E-value=0.017 Score=51.69 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGAI 396 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~~ 396 (566)
.++|+|+.|+|||||++.+.|..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47899999999999999999864
No 446
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.71 E-value=0.016 Score=53.16 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGAI 396 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~~ 396 (566)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998643
No 447
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.69 E-value=0.016 Score=54.47 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGA 395 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~ 395 (566)
+++|+|+.||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999643
No 448
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.68 E-value=0.018 Score=51.21 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGA 395 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~ 395 (566)
.++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999974
No 449
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.64 E-value=0.019 Score=53.37 Aligned_cols=25 Identities=36% Similarity=0.262 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHCC
Q psy7366 371 RGECFGLLGLNGAGKTTTFKMLTGA 395 (566)
Q Consensus 371 ~Ge~~~l~G~NGsGKSTLl~~i~G~ 395 (566)
.+-+++|+|+.||||||+.+.|+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4558999999999999999999754
No 450
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.63 E-value=0.018 Score=51.68 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGA 395 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~ 395 (566)
+++|.|+.||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999763
No 451
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.63 E-value=0.019 Score=51.20 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGAI 396 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~~ 396 (566)
.++|+|+.|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 47899999999999999998754
No 452
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.60 E-value=0.015 Score=52.41 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGA 395 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~ 395 (566)
+++|+|+.||||||+.+.|+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999854
No 453
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.60 E-value=6.6e-06 Score=79.47 Aligned_cols=63 Identities=11% Similarity=0.112 Sum_probs=31.8
Q ss_pred HhCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHh-----CCCEEEEecCChhHHHhhcCEEEEEeCCE
Q psy7366 105 LLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS-----EGRCVILTSHNMEECEALCTKLTIMVNGQ 167 (566)
Q Consensus 105 l~~~p~vLlLDEPt~~LD~~~~~~l~~~l~~l~~-----~g~tviiisH~~~~~~~~~d~i~vl~~G~ 167 (566)
++..|+..+++|++...|..+.+.+.+.|++... ....+++++|+++++.+-+++++...+++
T Consensus 145 ~v~~~~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i~~~~~~ 212 (231)
T 3lnc_A 145 FIMPPSMEELRRRLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNILRAEQMK 212 (231)
T ss_dssp EEECSCHHHHHHC--------------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHHHHHHTB
T ss_pred EEECCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHHHHHhhc
Confidence 4567788889999999998887777766654321 13467788888888777666665433333
No 454
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.59 E-value=0.016 Score=51.46 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGAI 396 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~~ 396 (566)
.++|+|+.|+|||||++.+.+-.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998643
No 455
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.59 E-value=0.019 Score=51.68 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHCC
Q psy7366 373 ECFGLLGLNGAGKTTTFKMLTGA 395 (566)
Q Consensus 373 e~~~l~G~NGsGKSTLl~~i~G~ 395 (566)
++++|+|+.||||||+.+.|+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999753
No 456
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.58 E-value=0.016 Score=51.03 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGAI 396 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~~ 396 (566)
.++++|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 457
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.55 E-value=0.018 Score=52.71 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHCC
Q psy7366 372 GECFGLLGLNGAGKTTTFKMLTGA 395 (566)
Q Consensus 372 Ge~~~l~G~NGsGKSTLl~~i~G~ 395 (566)
..+++|+|+.||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999753
No 458
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.54 E-value=0.016 Score=51.06 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGAI 396 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~~ 396 (566)
.++++|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998653
No 459
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.53 E-value=0.018 Score=51.80 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGAI 396 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~~ 396 (566)
.++|+|+.|+|||||++.+.+-.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 460
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.53 E-value=0.022 Score=51.13 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHCC
Q psy7366 371 RGECFGLLGLNGAGKTTTFKMLTGA 395 (566)
Q Consensus 371 ~Ge~~~l~G~NGsGKSTLl~~i~G~ 395 (566)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4457899999999999999999874
No 461
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.53 E-value=0.018 Score=52.80 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366 373 ECFGLLGLNGAGKTTTFKMLTGAI 396 (566)
Q Consensus 373 e~~~l~G~NGsGKSTLl~~i~G~~ 396 (566)
-.++|+|+.|+|||||++.+.+-.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999999863
No 462
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.53 E-value=0.019 Score=53.42 Aligned_cols=25 Identities=32% Similarity=0.280 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366 372 GECFGLLGLNGAGKTTTFKMLTGAI 396 (566)
Q Consensus 372 Ge~~~l~G~NGsGKSTLl~~i~G~~ 396 (566)
..+++|.|+.||||||+.+.|+..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999998543
No 463
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.52 E-value=0.019 Score=53.51 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHCC
Q psy7366 373 ECFGLLGLNGAGKTTTFKMLTGA 395 (566)
Q Consensus 373 e~~~l~G~NGsGKSTLl~~i~G~ 395 (566)
-++||+|+.||||||+.+.|+..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999854
No 464
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.51 E-value=0.069 Score=51.04 Aligned_cols=52 Identities=17% Similarity=0.162 Sum_probs=40.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccC----------HHHHHhhCCEEEEEE
Q psy7366 494 GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN----------MEECEALCTKLTIMV 551 (566)
Q Consensus 494 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvl~vsHd----------~~~~~~~~drv~~l~ 551 (566)
.+.+++++||----.| +.++++.+.+.|+.||++.+| ...+..+||.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999877654 555555555679999999999 456667899998764
No 465
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.50 E-value=0.019 Score=54.04 Aligned_cols=22 Identities=36% Similarity=0.448 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGA 395 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~ 395 (566)
.++|+||.||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999753
No 466
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.48 E-value=0.017 Score=54.78 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366 371 RGECFGLLGLNGAGKTTTFKMLTGAI 396 (566)
Q Consensus 371 ~Ge~~~l~G~NGsGKSTLl~~i~G~~ 396 (566)
.+-++.|+|+.||||||+.+.|+-.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999998543
No 467
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.48 E-value=0.02 Score=55.51 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCC
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGAIK 397 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~~~ 397 (566)
.++|+|+.|+|||||++.|.|...
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 578999999999999999998754
No 468
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.47 E-value=0.019 Score=52.42 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGAI 396 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~~ 396 (566)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 68899999999999999999864
No 469
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.46 E-value=0.013 Score=53.10 Aligned_cols=22 Identities=45% Similarity=0.487 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHC
Q psy7366 373 ECFGLLGLNGAGKTTTFKMLTG 394 (566)
Q Consensus 373 e~~~l~G~NGsGKSTLl~~i~G 394 (566)
-.++|+|++|+|||||++.+.+
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3688999999999999999985
No 470
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.45 E-value=0.031 Score=56.11 Aligned_cols=47 Identities=17% Similarity=0.165 Sum_probs=34.5
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHC----CCCCCccEEEEcC
Q psy7366 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG----AIKPTSGNAYVMN 407 (566)
Q Consensus 360 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G----~~~~~~G~i~~~g 407 (566)
..+++..+.+ .|.-++|+|++|+||||+...+.+ ++..|...|...+
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~~~ 183 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREIS 183 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEESS
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEEcC
Confidence 4567777777 788999999999999999988886 3333444444433
No 471
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.45 E-value=0.021 Score=55.72 Aligned_cols=25 Identities=36% Similarity=0.266 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHCC
Q psy7366 371 RGECFGLLGLNGAGKTTTFKMLTGA 395 (566)
Q Consensus 371 ~Ge~~~l~G~NGsGKSTLl~~i~G~ 395 (566)
++.++.|+|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4668999999999999999999864
No 472
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.43 E-value=0.018 Score=50.80 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGA 395 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~ 395 (566)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998754
No 473
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.43 E-value=0.017 Score=51.38 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGAI 396 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~~ 396 (566)
.++|+|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998764
No 474
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.42 E-value=0.017 Score=51.13 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGA 395 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~ 395 (566)
.++++|+.|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 475
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.40 E-value=0.02 Score=52.05 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGAI 396 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~~ 396 (566)
.++|+|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999999864
No 476
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.38 E-value=0.018 Score=52.72 Aligned_cols=23 Identities=39% Similarity=0.424 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHCC
Q psy7366 373 ECFGLLGLNGAGKTTTFKMLTGA 395 (566)
Q Consensus 373 e~~~l~G~NGsGKSTLl~~i~G~ 395 (566)
-+++|+|+.||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999753
No 477
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.37 E-value=0.019 Score=51.05 Aligned_cols=22 Identities=27% Similarity=0.176 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGA 395 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~ 395 (566)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999865
No 478
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.37 E-value=0.017 Score=51.36 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGAI 396 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~~ 396 (566)
.++|+|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47899999999999999998654
No 479
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.36 E-value=0.018 Score=51.17 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGAI 396 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~~ 396 (566)
.++++|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998643
No 480
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.33 E-value=0.02 Score=51.57 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGAI 396 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~~ 396 (566)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48899999999999999888654
No 481
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.32 E-value=0.018 Score=50.98 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGA 395 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~ 395 (566)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 482
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.29 E-value=0.019 Score=51.59 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGAI 396 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~~ 396 (566)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998643
No 483
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.23 E-value=0.023 Score=55.10 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHCC
Q psy7366 373 ECFGLLGLNGAGKTTTFKMLTGA 395 (566)
Q Consensus 373 e~~~l~G~NGsGKSTLl~~i~G~ 395 (566)
-+++|.|+.||||||+.+.|+..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999764
No 484
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.22 E-value=0.021 Score=51.36 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGA 395 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~ 395 (566)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999875
No 485
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.21 E-value=0.015 Score=57.95 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=19.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHCCC
Q psy7366 371 RGECFGLLGLNGAGKTTTFKMLTGAI 396 (566)
Q Consensus 371 ~Ge~~~l~G~NGsGKSTLl~~i~G~~ 396 (566)
++-++||.||+||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998643
No 486
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.17 E-value=0.009 Score=63.27 Aligned_cols=44 Identities=27% Similarity=0.345 Sum_probs=33.7
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCccEEE
Q psy7366 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 404 (566)
Q Consensus 360 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~~~~G~i~ 404 (566)
.+++.+ +.+-+|+.++|+|++|+|||||++.|+.......+.|.
T Consensus 140 r~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~ 183 (473)
T 1sky_E 140 KVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGIS 183 (473)
T ss_dssp HHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCE
T ss_pred hHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEE
Confidence 355555 67889999999999999999999999876543334443
No 487
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.17 E-value=0.0088 Score=57.16 Aligned_cols=44 Identities=23% Similarity=0.319 Sum_probs=29.5
Q ss_pred HcCCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEEcc
Q psy7366 492 LLGNPPLIFLDEPTSG-MDPGARRFLWTCIERAVSEGRCVILTSH 535 (566)
Q Consensus 492 l~~~p~lllLDEPt~g-LD~~~~~~l~~~l~~~~~~g~tvl~vsH 535 (566)
+...|+++|+|||-.- .+.......++.+......|..|+.++|
T Consensus 81 L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 81 LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred HhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 3458999999998642 4433233344555555667889999998
No 488
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.16 E-value=0.025 Score=56.66 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGAI 396 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~~ 396 (566)
.++|+|++|+|||||++.|.|..
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999863
No 489
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=94.15 E-value=0.028 Score=55.10 Aligned_cols=30 Identities=23% Similarity=0.389 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHCCCCCCccE
Q psy7366 373 ECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402 (566)
Q Consensus 373 e~~~l~G~NGsGKSTLl~~i~G~~~~~~G~ 402 (566)
-.++++|.+|+|||||++.|.|......|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 578999999999999999999977654443
No 490
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.15 E-value=0.025 Score=55.22 Aligned_cols=23 Identities=43% Similarity=0.429 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGAI 396 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~~ 396 (566)
.++|+|+.|||||||++.++|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 57899999999999999999974
No 491
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.12 E-value=0.026 Score=53.66 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGA 395 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~ 395 (566)
+++|.|+.||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999753
No 492
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.11 E-value=0.04 Score=63.30 Aligned_cols=26 Identities=35% Similarity=0.451 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHCCCCC
Q psy7366 373 ECFGLLGLNGAGKTTTFKMLTGAIKP 398 (566)
Q Consensus 373 e~~~l~G~NGsGKSTLl~~i~G~~~~ 398 (566)
..+.|.||+|+|||++.+.|+.....
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 47889999999999999999987654
No 493
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.07 E-value=0.028 Score=50.51 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGAI 396 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~~ 396 (566)
.++|+|+.|+|||||++.+.+-.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 47899999999999999998754
No 494
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.06 E-value=0.025 Score=55.92 Aligned_cols=22 Identities=32% Similarity=0.628 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHC
Q psy7366 373 ECFGLLGLNGAGKTTTFKMLTG 394 (566)
Q Consensus 373 e~~~l~G~NGsGKSTLl~~i~G 394 (566)
-+++|+|+.||||||+.+.|+.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999983
No 495
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.05 E-value=0.024 Score=50.46 Aligned_cols=22 Identities=45% Similarity=0.555 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGA 395 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~ 395 (566)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999753
No 496
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.04 E-value=0.026 Score=51.56 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCC
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGAIKP 398 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~~~~ 398 (566)
.++|+|+.|+|||||++.+.|....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 4789999999999999999987643
No 497
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.04 E-value=0.024 Score=50.23 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGA 395 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~ 395 (566)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999863
No 498
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.04 E-value=0.024 Score=51.36 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGAI 396 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~~ 396 (566)
.++|+|+.|+|||||++.+.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998643
No 499
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.04 E-value=0.024 Score=51.97 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGAI 396 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~~ 396 (566)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998743
No 500
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.01 E-value=0.021 Score=58.88 Aligned_cols=22 Identities=45% Similarity=0.750 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q psy7366 374 CFGLLGLNGAGKTTTFKMLTGA 395 (566)
Q Consensus 374 ~~~l~G~NGsGKSTLl~~i~G~ 395 (566)
.++|+|++|+|||||++.|+|.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999985
Done!